RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7068
(487 letters)
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 134 bits (339), Expect = 2e-38
Identities = 58/105 (55%), Positives = 77/105 (73%)
Query: 270 PPLEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDS 329
P EWAVP +S+LKY QLFN+ D+T SG L+GPQAR I++ + L Q LA IWNL+D+D
Sbjct: 2 PVAEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQ 61
Query: 330 DGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNS 374
DG+L+ +EF+LAMHL D+A G+ +P LP + IPP+FRR R
Sbjct: 62 DGKLTAEEFILAMHLIDVAMSGQPLPPVLPPEYIPPSFRRVRLEH 106
Score = 109 bits (274), Expect = 5e-29
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 383 MDPWNVSRHERTRFETHFQAM-KPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQD 441
+ W V + R ++ F + K ++G +TG Q + LMQS LP A L IW+L+D DQD
Sbjct: 3 VAEWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQD 62
Query: 442 GKMNINEFVIACKLISNKLRGFDIPPTLPVSLM 474
GK+ EF++A LI + G +PP LP +
Sbjct: 63 GKLTAEEFILAMHLIDVAMSGQPLPPVLPPEYI 95
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 126 bits (318), Expect = 2e-35
Identities = 32/101 (31%), Positives = 43/101 (42%)
Query: 268 GGPPLEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADM 327
P W + + Y F + S F+SG A+N + LS L+ IW L+D
Sbjct: 8 SYPDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDA 67
Query: 328 DSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFR 368
D DG L+ EF A HL K G +P LP + P
Sbjct: 68 DCDGALTLPEFCAAFHLIVARKNGYPLPEGLPPTLQPEFIV 108
Score = 113 bits (285), Expect = 1e-30
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 374 SVTLAANVAMDPWNVSRHERTRFETHFQAMKP-VNGIVTGDQVKGFLMQSGLPVATLGQI 432
S+ ++ +PW ++ +R + F++++P + ++G K F +S L + L I
Sbjct: 2 SLQDNSSYPDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYI 61
Query: 433 WSLADTDQDGKMNINEFVIACKLISNKLRGFDIPPTLPVSLM 474
W L+D D DG + + EF A LI + G+ +P LP +L
Sbjct: 62 WELSDADCDGALTLPEFCAAFHLIVARKNGYPLPEGLPPTLQ 103
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 124 bits (314), Expect = 7e-35
Identities = 40/94 (42%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 274 WAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQL 333
W V A K KY ++F TD+ GF+SG + R I + TGL +LA IW+L D G+L
Sbjct: 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKL 61
Query: 334 SCDEFVLAMHLCDLA-KGGEKIPVPLPIDMIPPA 366
S D+F LA HL G P L +MIPP+
Sbjct: 62 SKDQFALAFHLISQKLIKGIDPPHVLTPEMIPPS 95
Score = 105 bits (264), Expect = 7e-28
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 386 WNVSRHERTRFETHFQAM-KPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKM 444
W VS E+ +++ F K ++G V+G +V+ +++GLP L IWSL DT GK+
Sbjct: 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKL 61
Query: 445 NINEFVIACKLISNKL-RGFDIPPTLPVSLM 474
+ ++F +A LIS KL +G D P L ++
Sbjct: 62 SKDQFALAFHLISQKLIKGIDPPHVLTPEMI 92
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 122 bits (307), Expect = 5e-34
Identities = 30/91 (32%), Positives = 42/91 (46%)
Query: 274 WAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQL 333
W + + Y F T +GF+ G A+ + L L+ IW L+D D DG L
Sbjct: 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGAL 60
Query: 334 SCDEFVLAMHLCDLAKGGEKIPVPLPIDMIP 364
+ DEF A HL K G +P LP ++P
Sbjct: 61 TLDEFCAAFHLVVARKNGYDLPEKLPESLMP 91
Score = 111 bits (280), Expect = 4e-30
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 386 WNVSRHERTRFETHFQAMKP-VNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKM 444
W ++ +R + F+ ++P +NG + G K F +S LP+ L IW L+D D+DG +
Sbjct: 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGAL 60
Query: 445 NINEFVIACKLISNKLRGFDIPPTLPVSLM 474
++EF A L+ + G+D+P LP SLM
Sbjct: 61 TLDEFCAAFHLVVARKNGYDLPEKLPESLM 90
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 130 bits (327), Expect = 8e-33
Identities = 44/171 (25%), Positives = 65/171 (38%), Gaps = 1/171 (0%)
Query: 204 KLTPPGPLTPDKPPAPVESPWGAFINGWLSTKEKDLEVNNSNLVDLKKTLANMMSDSEKL 263
L P D A + + + + D
Sbjct: 380 SLKPKLLEALDDMLAQDIAKLMPLLRQEELESVEAGVAGGAFEGTRMGPFVERGPDEAIE 439
Query: 264 YNVLGGPPLEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWN 323
G V K KY ++F G LSG +A+ MV T L +L +IW
Sbjct: 440 DGEEGSEDDAEWVVTKDKSKYDEIFYNLA-PADGKLSGSKAKTWMVGTKLPNSVLGRIWK 498
Query: 324 LADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNS 374
L+D+D DG L +EF LA HL + G +P LP ++PP+ RRQ+ ++
Sbjct: 499 LSDVDRDGMLDDEEFALASHLIEAKLEGHGLPTNLPRRLVPPSKRRQKGSA 549
Score = 115 bits (288), Expect = 1e-27
Identities = 33/113 (29%), Positives = 58/113 (51%)
Query: 362 MIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQ 421
M P R + D V ++++++ F + P +G ++G + K +++
Sbjct: 426 MGPFVERGPDEAIEDGEEGSEDDAEWVVTKDKSKYDEIFYNLAPADGKLSGSKAKTWMVG 485
Query: 422 SGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISNKLRGFDIPPTLPVSLM 474
+ LP + LG+IW L+D D+DG ++ EF +A LI KL G +P LP L+
Sbjct: 486 TKLPNSVLGRIWKLSDVDRDGMLDDEEFALASHLIEAKLEGHGLPTNLPRRLV 538
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 117 bits (294), Expect = 8e-32
Identities = 42/97 (43%), Positives = 62/97 (63%)
Query: 382 AMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQD 441
++D W ++ ER + + F ++KP++G +TGDQ + F QSGLP L QIW+LAD + D
Sbjct: 21 SLDTWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALADMNND 80
Query: 442 GKMNINEFVIACKLISNKLRGFDIPPTLPVSLMQSLA 478
G+M+ EF IA KLI KL+G+ +P LP + Q
Sbjct: 81 GRMDQVEFSIAMKLIKLKLQGYQLPSALPPVMKQQPV 117
Score = 110 bits (276), Expect = 4e-29
Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 268 GGPPLEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADM 327
GG WA+ + K+ Q F++ SGF++G QARN +GL Q +LAQIW LADM
Sbjct: 19 GGSLDTWAITVEERAKHDQQFHSLK-PISGFITGDQARNFFFQSGLPQPVLAQIWALADM 77
Query: 328 DSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPA 366
++DG++ EF +AM L L G ++P LP M
Sbjct: 78 NNDGRMDQVEFSIAMKLIKLKLQGYQLPSALPPVMKQQP 116
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 115 bits (290), Expect = 2e-31
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Query: 273 EWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQ 332
WAV K KY +F++ +GFLSG + + +++ + L IL ++W L+D+D DG
Sbjct: 6 PWAVKPEDKAKYDAIFDSLS-PVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGM 64
Query: 333 LSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQ 370
L DEF +AM L A E +P+ LP ++PP+ R+
Sbjct: 65 LDRDEFAVAMFLVYCALEKEPVPMSLPPALVPPSKRKT 102
Score = 114 bits (287), Expect = 6e-31
Identities = 34/93 (36%), Positives = 57/93 (61%)
Query: 384 DPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGK 443
PW V ++ +++ F ++ PVNG ++GD+VK L+ S LPV LG++W L+D D DG
Sbjct: 5 SPWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGM 64
Query: 444 MNINEFVIACKLISNKLRGFDIPPTLPVSLMQS 476
++ +EF +A L+ L +P +LP +L+
Sbjct: 65 LDRDEFAVAMFLVYCALEKEPVPMSLPPALVPP 97
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 113 bits (285), Expect = 3e-30
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 268 GGPPLEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADM 327
G +EW V K Y ++F T +G ++G A+ MV + L +L +IW LAD+
Sbjct: 38 GIDDVEWVVG-KDKPTYDEIFYTLS-PVNGKITGANAKKEMVKSKLPNTVLGKIWKLADV 95
Query: 328 DSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQ 370
D DG L +EF LA HL + G ++P LP ++PP+ RR
Sbjct: 96 DKDGLLDDEEFALANHLIKVKLEGHELPADLPPHLVPPSKRRH 138
Score = 106 bits (266), Expect = 1e-27
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 370 QRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATL 429
+ W V + ++ ++ F + PVNG +TG K +++S LP L
Sbjct: 28 GHGYGEGAGEGIDDVEWVVGK-DKPTYDEIFYTLSPVNGKITGANAKKEMVKSKLPNTVL 86
Query: 430 GQIWSLADTDQDGKMNINEFVIACKLISNKLRGFDIPPTLPVSLMQS 476
G+IW LAD D+DG ++ EF +A LI KL G ++P LP L+
Sbjct: 87 GKIWKLADVDKDGLLDDEEFALANHLIKVKLEGHELPADLPPHLVPP 133
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 102 bits (256), Expect = 1e-26
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 279 ASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEF 338
+ Y + + + +G + A + +GL IL +IW+LAD D G LS EF
Sbjct: 8 SGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEF 67
Query: 339 VLAMHLCDLAKGGEKIPVPLPIDMIPP 365
+A+ L A+ G ++ + +PP
Sbjct: 68 FVALRLVACAQNGLEVSLSSLSLAVPP 94
Score = 96.0 bits (239), Expect = 2e-24
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 385 PWNVSRHERTRFETHFQAMKPVN-GIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGK 443
+E +++ ++ N G V FL +SGLP LG+IW LADTD G
Sbjct: 2 SLTQLSSGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGV 61
Query: 444 MNINEFVIACKLISNKLRGFDIPPTLPVSLM 474
++ EF +A +L++ G ++ + +
Sbjct: 62 LSKQEFFVALRLVACAQNGLEVSLSSLSLAV 92
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 56.7 bits (137), Expect = 1e-09
Identities = 28/187 (14%), Positives = 61/187 (32%), Gaps = 50/187 (26%)
Query: 283 KYTQLFNTTDRTRSGFLS----GPQARNIMVATGLS-------------QGILAQIWNLA 325
+ + F+ D +G L +A++I A G G+ + A
Sbjct: 8 RLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEA 67
Query: 326 DMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDP 385
+ SDG L+ ++F+ +G L ++ D
Sbjct: 68 GVGSDGSLTEEQFIRVTENLIFEQGEASFNRVL-GPVVKGIVG-------------MCDK 113
Query: 386 WNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMN 445
+G + D+ +L G+ A + ++ DT+ +G+++
Sbjct: 114 NA-------------------DGQINADEFAAWLTALGMSKAEAAEAFNQVDTNGNGELS 154
Query: 446 INEFVIA 452
++E + A
Sbjct: 155 LDELLTA 161
Score = 48.2 bits (115), Expect = 8e-07
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 287 LFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343
+ D+ G ++ + + A G+S+ A+ +N D + +G+LS DE + A+
Sbjct: 107 IVGMCDKNADGQINADEFAAWLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVR 163
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 56.4 bits (136), Expect = 2e-09
Identities = 24/181 (13%), Positives = 52/181 (28%), Gaps = 45/181 (24%)
Query: 283 KYTQLFNTTDRTRSGFLS----GPQARNIMVATGLS-------QGILAQIWNLADMDSDG 331
+ + F+T D G + + + + + + ++
Sbjct: 37 RLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVN 96
Query: 332 QLSCDEFVLAM-HLCDLAKGGEKIPVPLPI-DMIPPAFRRQRQNSVTLAANVAMDPWNVS 389
L +++V A + + E+ P I + + +D
Sbjct: 97 GLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYD-------------VLDDDG-- 141
Query: 390 RHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEF 449
+G V D++K + +P + ADTD+ GK+ E
Sbjct: 142 -----------------DGTVDVDELKTMMKAFDVPQEAAYTFFEKADTDKSGKLERTEL 184
Query: 450 V 450
V
Sbjct: 185 V 185
Score = 54.4 bits (131), Expect = 1e-08
Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 9/109 (8%)
Query: 237 KDLEVNNSNLVDLKKTLANM--MSDSEKLYNVLGGPPLEWAVPHASKLKYTQLFNTTDRT 294
V N + + + +++E+ G P L + ++ ++ D
Sbjct: 88 LHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNS-------YYDVLDDD 140
Query: 295 RSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343
G + + + +M A + Q + AD D G+L E V
Sbjct: 141 GDGTVDVDELKTMMKAFDVPQEAAYTFFEKADTDKSGKLERTELVHLFR 189
Score = 28.6 bits (64), Expect = 3.4
Identities = 3/38 (7%), Positives = 13/38 (34%)
Query: 427 ATLGQIWSLADTDQDGKMNINEFVIACKLISNKLRGFD 464
+ + + + ++V A ++ + R +
Sbjct: 81 DAVRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERE 118
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 56.4 bits (136), Expect = 2e-09
Identities = 22/163 (13%), Positives = 54/163 (33%), Gaps = 30/163 (18%)
Query: 294 TRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEK 353
F + + + + ++ D + D + E+V A++L K
Sbjct: 41 FMHEFKRFFKVPD----NEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLEHK 96
Query: 354 IPVPLPIDMIPPAFRR--QRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVT 411
+ F+ + +N + R E +++ + +
Sbjct: 97 LKW---------TFKIYDKDRNGC------------IDRQE---LLDIVESIYKLKKACS 132
Query: 412 GDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACK 454
+ + P + +I+ L D + DG++++NEFV +
Sbjct: 133 VEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGAR 175
Score = 36.7 bits (85), Expect = 0.008
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 21/81 (25%)
Query: 281 KLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQG-------------------ILAQI 321
KLK+T F D+ R+G + + +I+ + + ++ +I
Sbjct: 96 KLKWT--FKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRI 153
Query: 322 WNLADMDSDGQLSCDEFVLAM 342
+ L D + DGQLS +EFV
Sbjct: 154 FLLVDENGDGQLSLNEFVEGA 174
Score = 31.7 bits (72), Expect = 0.32
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 407 NGIVTGDQVKGFL--MQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISNKLRG 462
+G + + K F + + ++ DT+ D ++ E+V A ++ LRG
Sbjct: 37 SGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLEYVAA---LNLVLRG 91
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 55.1 bits (133), Expect = 3e-09
Identities = 33/187 (17%), Positives = 55/187 (29%), Gaps = 51/187 (27%)
Query: 283 KYTQLFNTTDRTRSGFLS----GPQARNIMVATGLSQG-------------ILAQIWNLA 325
+ F T D+ +G + A+ ++ G++ + + +A
Sbjct: 5 RIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIA 64
Query: 326 DMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDP 385
D D D +++ +EFV K + P + A D
Sbjct: 65 DRDGDQRITREEFVTGAVKRLRDKPDRFAEMARP--FLHAALG-------------VADT 109
Query: 386 WNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMN 445
+G VT L G+P Q + DTD DGK+
Sbjct: 110 DG-------------------DGAVTVADTARALTAFGVPEDLARQAAAALDTDGDGKVG 150
Query: 446 INEFVIA 452
E V A
Sbjct: 151 ETEIVPA 157
Score = 49.7 bits (119), Expect = 2e-07
Identities = 19/149 (12%), Positives = 37/149 (24%), Gaps = 22/149 (14%)
Query: 200 AAITKLTPPGPLTPDKP-----PAPVESPWGAFINGWLSTKEKDLEVNNSNLVDLKKTLA 254
A + + E+ W + + + ++ +
Sbjct: 28 GAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAG--------IADRDGDQRITREEFVT 79
Query: 255 NMMSDSEKLYNVLGGPPLEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLS 314
+ K E A P D G ++ + A G+
Sbjct: 80 GAV----KRLRDKPDRFAEMARPFLHAA-----LGVADTDGDGAVTVADTARALTAFGVP 130
Query: 315 QGILAQIWNLADMDSDGQLSCDEFVLAMH 343
+ + Q D D DG++ E V A
Sbjct: 131 EDLARQAAAALDTDGDGKVGETEIVPAFA 159
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 53.6 bits (129), Expect = 1e-08
Identities = 29/186 (15%), Positives = 54/186 (29%), Gaps = 51/186 (27%)
Query: 283 KYTQLFNTTDRTRSGFLS----GPQARNIMVATGLS-------QGILAQIWN--LADMDS 329
K FN D + G ++ A + + L +W+ L +
Sbjct: 7 KMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAG 66
Query: 330 DGQLSCDEFVLAM-HLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNV 388
+ F+ +M + + + +P FR A+D
Sbjct: 67 GKGIDETTFINSMKEMVKNPEAKSVV-----EGPLPLFFR-------------AVDTNE- 107
Query: 389 SRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINE 448
+ ++ D+ F GL + DT+ DG +++ E
Sbjct: 108 ------------------DNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGLLSLEE 149
Query: 449 FVIACK 454
FVIA
Sbjct: 150 FVIAGS 155
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 55.2 bits (133), Expect = 2e-08
Identities = 37/234 (15%), Positives = 77/234 (32%), Gaps = 73/234 (31%)
Query: 232 LSTKEKDLEVNNSNLVDLKKTLANMMSDSEKLYNVLGGPPLEWAVPHASKLKYTQLFNTT 291
L++ KDLE + S L+ M+S+ + + L+ QLF ++
Sbjct: 92 LASLLKDLEDDASGYNRLRP-SKPMLSEEDT-----------------NILR--QLFLSS 131
Query: 292 DRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM-HLCDLA 348
+ SG S + ++ + +G L +++ + + D+ G++S V L L
Sbjct: 132 AVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVANDLAALV 191
Query: 349 KGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPVNG 408
FR +D NG
Sbjct: 192 A----------------DFR-------------KID-------------------TNSNG 203
Query: 409 IVTGDQVKGFLMQSGLP-VATLGQIWSLADTDQDGKMNINEFVIACKLISNKLR 461
++ + + ++ G + ++ AD D+ + +E+V + LR
Sbjct: 204 TLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLGLCL-LVLR 256
Score = 53.7 bits (129), Expect = 5e-08
Identities = 25/178 (14%), Positives = 48/178 (26%), Gaps = 53/178 (29%)
Query: 278 HASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGL-SQGILAQIWNLADMDSDGQLSCD 336
F D +G LS + R V G + + ++ AD D +
Sbjct: 184 ANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGFS 243
Query: 337 EFVLAM-HLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTR 395
E+V L L + +
Sbjct: 244 EYVHLGLCLLVLRI----------------LYAFADFDK--------------------- 266
Query: 396 FETHFQAMKPVNGIVTGDQVKGFLMQSGLPVAT---LGQIWSLADTDQDGKMNINEFV 450
+G ++ ++V+ L + +P + +S+ D D ++ EFV
Sbjct: 267 -----------SGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFV 313
Score = 50.6 bits (121), Expect = 5e-07
Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 13/159 (8%)
Query: 313 LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQ 372
++Q Q LA+ D Q D A + A+G + + + +
Sbjct: 46 IAQKEQEQKAKLAEYDQKVQNEFDARERAEREREAARG-DAAAEKQRLASL--LKDLEDD 102
Query: 373 NSVTLAANVAMDPWNVSRHERTRFETHFQAM-KPVNGIVTGDQVKGFLMQSGLPV--ATL 429
S + +S + F + +G + +K L + + L
Sbjct: 103 ASGYNRLRPSKP--MLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPL 160
Query: 430 GQIWSLADTDQDGKMNINEFVIACKLISNKL----RGFD 464
+++ + + D G+M+ V + L R D
Sbjct: 161 KKLFVMVENDTKGRMSYITLVAVANDL-AALVADFRKID 198
Score = 44.0 bits (104), Expect = 7e-05
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 279 ASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGL---SQGILAQIWNLADMDSDGQLSC 335
L L+ D +SG LS + + ++ + ++ +++ D+D LS
Sbjct: 250 LCLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSY 309
Query: 336 DEFVLAM 342
EFV+ +
Sbjct: 310 QEFVMLV 316
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 53.3 bits (128), Expect = 2e-08
Identities = 14/144 (9%), Positives = 38/144 (26%), Gaps = 10/144 (6%)
Query: 200 AAITKLTPPGPLTPDKPPAPVESPWGAFINGWLSTKEKDLEVNNSNLVDLKKTLANMMSD 259
AI K+ D + A + K + N V ++ L
Sbjct: 37 LAIKKICNLHSWPTD---GKKHNEARATLKLIWDGLRKYADENEDEQVTKEEWLKMWA-- 91
Query: 260 SEKLYNVLGGPPLEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILA 319
+ ++P +F+ D + + + + ++ G+ +
Sbjct: 92 -----ECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCD 146
Query: 320 QIWNLADMDSDGQLSCDEFVLAMH 343
++ ++ + F
Sbjct: 147 AAFDTLSDGGKTMVTREIFARLWT 170
Score = 52.9 bits (127), Expect = 3e-08
Identities = 23/190 (12%), Positives = 43/190 (22%), Gaps = 50/190 (26%)
Query: 283 KYTQLFNT-TDRTRSGFLS----GPQARNIMVATGLSQG---------ILAQIW----NL 324
K ++FNT D G + + I L IW
Sbjct: 13 KILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKY 72
Query: 325 ADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMD 384
AD + D Q++ +E++ C + + + F D
Sbjct: 73 ADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFD-------------VND 119
Query: 385 PWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKM 444
+ I+ + M G+P + + +
Sbjct: 120 TSG-------------------DNIIDKHEYSTVYMSYGIPKSDCDAAFDTLSDGGKTMV 160
Query: 445 NINEFVIACK 454
F
Sbjct: 161 TREIFARLWT 170
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 52.2 bits (125), Expect = 4e-08
Identities = 24/188 (12%), Positives = 47/188 (25%), Gaps = 50/188 (26%)
Query: 281 KLKYTQLFNT-TDRTRSGFLS----GPQARNIMVATGLSQG---------ILAQIWN--- 323
K K F+ D G + S L W
Sbjct: 7 KQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLK 66
Query: 324 -LADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVA 382
AD++ D +S +E++ + IP F+
Sbjct: 67 GRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFK-------------G 113
Query: 383 MDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDG 442
MD +GIV ++ + + L A + ++++
Sbjct: 114 MDVSG-------------------DGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKV 154
Query: 443 KMNINEFV 450
++N +
Sbjct: 155 TFDLNRYK 162
Score = 50.7 bits (121), Expect = 1e-07
Identities = 8/67 (11%), Positives = 21/67 (31%)
Query: 277 PHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCD 336
P + + LF D + G + + +N L + ++N+ +
Sbjct: 100 PAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLN 159
Query: 337 EFVLAMH 343
+ +
Sbjct: 160 RYKELYY 166
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 51.3 bits (123), Expect = 9e-08
Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 49/186 (26%)
Query: 283 KYTQLFNTTDRTRSGFLS----GPQARNIMVATGLSQG-------ILAQIWNLADMDSDG 331
K D T GF+S A I LS ++ + +
Sbjct: 15 KMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGV 74
Query: 332 QLSCDEFVLAM-HLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSR 390
++S +E + KG EK + + + +D
Sbjct: 75 RISVEEAAVNATDSLLKMKGEEKAMAVIQSLI---MYD-------------CIDTDK--- 115
Query: 391 HERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPV--ATLGQIWSLADTDQDGKMNINE 448
+G V+ + K FL G + ++ D +++G+++ +E
Sbjct: 116 ----------------DGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDE 159
Query: 449 FVIACK 454
F++
Sbjct: 160 FLVTVN 165
Score = 45.1 bits (107), Expect = 1e-05
Identities = 19/109 (17%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 237 KDLEVNNSNLVDLKKTLANMMSDSEKLYNVLGGPPLEWAVPHASKLKYTQLFNTTDRTRS 296
L + + +++ N + L + G + ++ +++ D +
Sbjct: 66 DQLGLAPGVRISVEEAAVNAT---DSLLKMKGEEKAM------AVIQSLIMYDCIDTDKD 116
Query: 297 GFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343
G++S P+ + + A G L+ +N D + +GQ+S DEF++ ++
Sbjct: 117 GYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVN 165
Score = 37.8 bits (88), Expect = 0.003
Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 27/145 (18%)
Query: 318 LAQIWNLADMDSDGQLSCDEFV-LAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVT 376
+ D+ DG +S +++ +A+ + +AK + RQ +
Sbjct: 16 MKTRMQRVDVTGDGFISREDYELIAVRIAKIAK------------LSAEKAEETRQEFLR 63
Query: 377 LAANVAMDP-WNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSL 435
+A + + P +S E T +K + + V ++
Sbjct: 64 VADQLGLAPGVRISVEE-------AAVN------ATDSLLKMKGEEKAMAVIQSLIMYDC 110
Query: 436 ADTDQDGKMNINEFVIACKLISNKL 460
DTD+DG +++ EF + + L
Sbjct: 111 IDTDKDGYVSLPEFKAFLQAVGPDL 135
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 51.6 bits (123), Expect = 2e-07
Identities = 30/257 (11%), Positives = 74/257 (28%), Gaps = 54/257 (21%)
Query: 215 KPPAPVESPWGAFINGWLSTKEKDLEVNNSNLVDLKKTLANMMSDSEKLYNVLGGPPLEW 274
K P + + + + + +++ ++ E +
Sbjct: 42 KKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREA--- 98
Query: 275 AVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQG----------ILAQIWNL 324
P + +++ +++ D SG++S + +N + L + +
Sbjct: 99 --PLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKI 156
Query: 325 ADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMD 384
D + DG+L ++ + ++N + A
Sbjct: 157 FDKNKDGRLDLNDLARIL--------------------------ALQENFLLQFKMDASS 190
Query: 385 PWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPV----------ATLGQIWS 434
R F H+ G + G +V GF+ V + +
Sbjct: 191 QVERKRDFEKIFA-HY--DVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLT 247
Query: 435 LADTDQDGKMNINEFVI 451
D ++DGK+ +E +
Sbjct: 248 HCDMNKDGKIQKSELAL 264
Score = 45.8 bits (108), Expect = 1e-05
Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 14/118 (11%)
Query: 237 KDLEVNNSNLVDLKKTLANMMSDSEKLYNVLGGPPLEWAVPHASKLKYTQLFNTTDRTRS 296
K + N +DL LA +++ E N L ++ + K + ++F D +R+
Sbjct: 155 KIFDKNKDGRLDLN-DLARILALQE---NFLLQFKMDASSQVERKRDFEKIFAHYDVSRT 210
Query: 297 GFLSGPQARNIMVATGLSQG----------ILAQIWNLADMDSDGQLSCDEFVLAMHL 344
G L GP+ + + DM+ DG++ E L + L
Sbjct: 211 GALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCLGL 268
Score = 45.4 bits (107), Expect = 2e-05
Identities = 28/195 (14%), Positives = 55/195 (28%), Gaps = 26/195 (13%)
Query: 318 LAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNS--- 374
QIW D D +G + E + + I +F +
Sbjct: 13 FLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDG 72
Query: 375 -------VTLAANVAMDPWNVSRHE-RTRFETHFQAM-----KPVNGIVTGDQVKGFLMQ 421
+ + + R E F + +G ++ ++K FL
Sbjct: 73 RLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKD 132
Query: 422 SGLPVAT----------LGQIWSLADTDQDGKMNINEFVIACKLISNKLRGFDIPPTLPV 471
L + + D ++DG++++N+ L N L F + + V
Sbjct: 133 LFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQV 192
Query: 472 SLMQSLAGKDKTYDK 486
+ YD
Sbjct: 193 ERKRDFEKIFAHYDV 207
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 49.9 bits (120), Expect = 2e-07
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 278 HASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSC 335
+ +F T DR SG + + + + G LS + D GQ++
Sbjct: 70 WKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAF 129
Query: 336 DEFVLAM 342
D+F+
Sbjct: 130 DDFIQGC 136
Score = 43.8 bits (104), Expect = 2e-05
Identities = 26/188 (13%), Positives = 61/188 (32%), Gaps = 57/188 (30%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVA---TGLSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
+F D+ RSG +S + + + T + + I ++ D ++ ++ EF
Sbjct: 11 NVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVW 70
Query: 343 -HLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQ 401
++ D FR ++R
Sbjct: 71 KYITDWQN----------------VFR---------------------TYDRDN------ 87
Query: 402 AMKPVNGIVTGDQVKGFLMQSG--LPVATLGQIWSLADTDQDGKMNINEFVIAC---KLI 456
+G++ +++K L G L + D G++ ++F+ C + +
Sbjct: 88 -----SGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRL 142
Query: 457 SNKLRGFD 464
++ R +D
Sbjct: 143 TDIFRRYD 150
Score = 35.3 bits (82), Expect = 0.018
Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 392 ERTRFETHFQAM-KPVNGIVTGDQVKGFLM---QSGLPVATLGQIWSLADTDQDGKMNIN 447
+++ FQ + K +G+++ +++ L + T+ I S+ D + +N +
Sbjct: 5 DQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFS 64
Query: 448 EFVIACKLISNKLRG----FD 464
EF K I + +D
Sbjct: 65 EFTGVWKYI-TDWQNVFRTYD 84
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 50.0 bits (120), Expect = 2e-07
Identities = 22/174 (12%), Positives = 53/174 (30%), Gaps = 52/174 (29%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAM-HL 344
+LF D +G LS + ++ + G+ + + +I D++ G ++ EF+
Sbjct: 43 ELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDINDRGNITYTEFMAGCYRW 102
Query: 345 CDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMK 404
++ + AF + +D K
Sbjct: 103 KNIES-----------TFLKAAFNK-------------ID-------------------K 119
Query: 405 PVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDG--------KMNINEFV 450
+G ++ + + L + + + + G K++ EF
Sbjct: 120 DEDGYISKSDIVSLVHDKVLDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFK 173
Score = 38.4 bits (90), Expect = 0.002
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 400 FQAM-KPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIAC 453
F + NG ++ ++ L G+ + +I D + G + EF+ C
Sbjct: 45 FYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDINDRGNITYTEFMAGC 99
Score = 36.9 bits (86), Expect = 0.005
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDG--------QLSCDE 337
FN D+ G++S +++ L + + G ++S E
Sbjct: 112 AAFNKIDKDEDGYISKSDIVSLVHDKVLDNNDIDNFFLSVHSIKKGIPREHIINKISFQE 171
Query: 338 FVLAM 342
F M
Sbjct: 172 FKDYM 176
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 46.6 bits (111), Expect = 6e-07
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
+F D RSG L + R + + ++ D D DG ++ EF
Sbjct: 31 SVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGF 87
Score = 33.5 bits (77), Expect = 0.020
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 387 NVSRHERTRFETHFQAM-KPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMN 445
+ E R + F A +G + ++ + + + A ++ D D+DG +
Sbjct: 20 DGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAIT 79
Query: 446 INEFV 450
EF
Sbjct: 80 FQEFA 84
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 48.4 bits (116), Expect = 9e-07
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 278 HASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSC 335
H L + F D + G L + R ++++G +S+ + D G L
Sbjct: 89 HHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGF 148
Query: 336 DEFVLAM 342
D++V
Sbjct: 149 DDYVELS 155
Score = 41.1 bits (97), Expect = 3e-04
Identities = 22/171 (12%), Positives = 53/171 (30%), Gaps = 19/171 (11%)
Query: 302 PQARNIMVATGLSQGILAQIW---NLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPL 358
P + + + ++ D D G +S E A+ + G +
Sbjct: 10 PTSTGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAAL-----SSAGVPFSLAT 64
Query: 359 PIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGF 418
++ + + +T + + R F +G + ++V+
Sbjct: 65 TEKLLH-MYDKNHSGEITFDEFKDL--HHFILSMREGFR-KRD--SSGDGRLDSNEVRAA 118
Query: 419 LMQSG--LPVATLGQIWSLADTDQDGKMNINEFVIAC---KLISNKLRGFD 464
L+ SG + T + D + G + +++V + N +D
Sbjct: 119 LLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIFVCRVRNVFAFYD 169
Score = 36.9 bits (86), Expect = 0.006
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
+ F D SG +S P+ + + G S ++ ++ D + G+++ DEF
Sbjct: 31 EWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLH 89
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 47.4 bits (113), Expect = 2e-06
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 278 HASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSC 335
+ K+ ++ D RSG + + A G L++ + + I D G +
Sbjct: 73 WNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMII-RRYSDEGGNMDF 131
Query: 336 DEFVLAM 342
D F+ +
Sbjct: 132 DNFISCL 138
Score = 33.2 bits (76), Expect = 0.084
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 392 ERTRFETHFQAMKPVNGIVTGDQVKGFLMQSG----------LPVATLGQIWSLADTDQD 441
E +F F + + V+ ++ L + + T + ++ D+D
Sbjct: 2 EVRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTT 61
Query: 442 GKMNINEFVIACKLISN 458
GK+ EF I
Sbjct: 62 GKLGFEEFKYLWNNIKK 78
Score = 30.5 bits (69), Expect = 0.71
Identities = 22/194 (11%), Positives = 52/194 (26%), Gaps = 64/194 (32%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATGLSQGILA----------QIWNLADMDSDGQLSC 335
+LF +S + NI+ L + + D D+ G+L
Sbjct: 8 RLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGF 66
Query: 336 DEFVLAM-HLCDLAKGGEKIPVPLPIDMIPPAFRR-QRQNSVTLAANVAMDPWNVSRHER 393
+EF ++ +++ S T+ ++
Sbjct: 67 EEFKYLWNNIKKWQA----------------IYKQFDVDRSGTIGSS------------- 97
Query: 394 TRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIAC 453
E A + G + + +++ +D+ G M+ + F+
Sbjct: 98 ---ELP-GAFEAA-GFHLNEHLYSMIIR--------------RYSDEGGNMDFDNFISCL 138
Query: 454 ---KLISNKLRGFD 464
+ + D
Sbjct: 139 VRLDAMFRAFKSLD 152
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 47.2 bits (112), Expect = 3e-06
Identities = 29/190 (15%), Positives = 63/190 (33%), Gaps = 38/190 (20%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATGLSQG---ILAQIWNLADMDSDGQLSCDEFVLAM 342
+ F SG ++ + I ++N D D +G +S ++F+ +
Sbjct: 71 RGFKNECP--SGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGL 128
Query: 343 HLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWN---VSRHERTRFETH 399
+ EK+ AF D +++ E
Sbjct: 129 SILLRGTVQEKLNW---------AFN-------------LYDINKDGYITKEE---MLDI 163
Query: 400 FQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISNK 459
+A+ + G T +K + + + D ++DG + I+EF+ +C+ N
Sbjct: 164 MKAIYDMMGKCTYPVLKEDAPRQ-----HVETFFQKMDKNKDGVVTIDEFIESCQKDENI 218
Query: 460 LRGFDIPPTL 469
+R + +
Sbjct: 219 MRSMQLFENV 228
Score = 36.4 bits (84), Expect = 0.011
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 16/76 (21%)
Query: 281 KLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQG--------------ILAQIWNLAD 326
KL + FN D + G+++ + +IM A G + + D
Sbjct: 139 KLNW--AFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMD 196
Query: 327 MDSDGQLSCDEFVLAM 342
+ DG ++ DEF+ +
Sbjct: 197 KNKDGVVTIDEFIESC 212
Score = 33.7 bits (77), Expect = 0.091
Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 16/103 (15%)
Query: 387 NVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVAT---LGQIWSLADTDQDGK 443
++ E F+ P +G+V + K Q + +++ DTD +G
Sbjct: 60 KFTKKELQILYRGFKNECP-SGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGA 118
Query: 444 MNINEFVIACKLISNKLRGFDIPPTLPVSLMQSLAGKDKTYDK 486
++ +F+ +S LRG ++ + L YD
Sbjct: 119 VSFEDFIKG---LSILLRG---------TVQEKLNWAFNLYDI 149
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 47.1 bits (112), Expect = 3e-06
Identities = 30/192 (15%), Positives = 65/192 (33%), Gaps = 47/192 (24%)
Query: 291 TDRTRSGFLSGPQARNIMVATGLSQGILAQ-IWNLADMDSDGQLSCDEFVLAM-HLCDLA 348
+ G + + + + + + A I+++ D+ +G + EFV ++ A
Sbjct: 48 SSIIDDGLIHKEEFQLALFRNRNRRNLFADRIFDVFDVKRNGVIEFGEFVRSLGVFHPSA 107
Query: 349 KGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAM-DPWN---VSRHERTRFETHFQAMK 404
EK+ AF+ + D + R E + A+
Sbjct: 108 PVHEKVKF---------AFK--------------LYDLRQTGFIEREE---LKEMVVALL 141
Query: 405 PVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISNKLRGF- 463
+ +V + + + + + AD DGK++I+E+ L + ++
Sbjct: 142 HESELVLSEDM---------IEVMVDKAFVQADRKNDGKIDIDEWKDFVSLNPSLIKNMT 192
Query: 464 -----DIPPTLP 470
DI T P
Sbjct: 193 LPYLKDINRTFP 204
Score = 37.1 bits (86), Expect = 0.007
Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 281 KLKYT-QLFNTTDRTRSGFLSGPQARNIMVATGLSQG----------ILAQIWNLADMDS 329
K+K+ +L+ D ++GF+ + + ++VA ++ + + AD +
Sbjct: 112 KVKFAFKLY---DLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKN 168
Query: 330 DGQLSCDEFVLAM 342
DG++ DE+ +
Sbjct: 169 DGKIDIDEWKDFV 181
Score = 33.2 bits (76), Expect = 0.10
Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 389 SRHERTRFETHFQAMKP---VNGIVTGDQVKGFLMQSGLPVATLGQ-IWSLADTDQDGKM 444
+ E F+ + +G++ ++ + L ++ I+ + D ++G +
Sbjct: 32 TVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFADRIFDVFDVKRNGVI 91
Query: 445 NINEFVIA 452
EFV +
Sbjct: 92 EFGEFVRS 99
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 46.4 bits (110), Expect = 7e-06
Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 45/197 (22%)
Query: 291 TDRTRSGFLSGPQARNIMVATGLSQGILAQ-IWNLADMDSDGQLSCDEFVLAM-HLCDLA 348
+ G ++ + + + T + + A +++L D +G L +EF A+ A
Sbjct: 59 SAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFEEFARALSVFHPNA 118
Query: 349 KGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWN---VSRHERTRFETHFQAMKP 405
+KI +F+ D + R E + A
Sbjct: 119 PIDDKIHF---------SFQ-------------LYDLKQQGFIERQEVKQMVVATLAESG 156
Query: 406 VNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISNKLRGF-- 463
+N + ++ + + + ADT DGK++ E+ + L+
Sbjct: 157 MN--LKDTVIEDIIDK----------TFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTL 204
Query: 464 ----DIPPTLPVSLMQS 476
DI T P + S
Sbjct: 205 QYLKDITTTFPSFVFHS 221
Score = 39.4 bits (92), Expect = 0.001
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 281 KLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQG----------ILAQIWNLADMDSD 330
K+ + F D + GF+ + + ++VAT G I+ + + AD D
Sbjct: 123 KIHF--SFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHD 180
Query: 331 GQLSCDEFVLAM 342
G++ +E+ +
Sbjct: 181 GKIDKEEWRSLV 192
Score = 30.9 bits (70), Expect = 0.78
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 389 SRHERTRFETHFQAMKPV---NGIVTGDQVKGFLMQSGLPVATLGQ-IWSLADTDQDGKM 444
S E F+ + +G++ ++ + L ++ + ++ L DT +G +
Sbjct: 43 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGIL 102
Query: 445 NINEFVIACKLISNK 459
EF A +
Sbjct: 103 GFEEFARALSVFHPN 117
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 44.0 bits (104), Expect = 7e-06
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343
Q F D ++ +S + R I L+ ++WN +++ G+L +F+
Sbjct: 28 QEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFS 87
Score = 35.9 bits (83), Expect = 0.004
Identities = 3/46 (6%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 407 NGIVTGDQVKGFLMQSGLPV--ATLGQIWSLADTDQDGKMNINEFV 450
++ ++ + + + ++W+ + G++ +F+
Sbjct: 38 TNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFL 83
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 45.2 bits (107), Expect = 1e-05
Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 48/181 (26%)
Query: 294 TRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEK 353
T F + + + + Q++N D + DG + EF+ A++L K +K
Sbjct: 38 TLHEFKTLLG---LQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQK 94
Query: 354 IPVPLPIDMIPPAFRRQRQNSVTLAANVAM-DPWN---VSRHERTRFETHFQAMKPVNGI 409
+ F+ + D + ++E QA+ +
Sbjct: 95 LKW---------YFK--------------LYDADGNGSIDKNELLDMFMAVQALNGQQTL 131
Query: 410 VTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACK----LISNKLRGFDI 465
+ + ++ D + DG++ + EF+ L+ + FD
Sbjct: 132 SPEEFIN--------------LVFHKIDINNDGELTLEEFINGMAKDQDLLEIVYKSFDF 177
Query: 466 P 466
Sbjct: 178 S 178
Score = 42.1 bits (99), Expect = 1e-04
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 281 KLKYT-QLFNTTDRTRSGFLSGPQARNIMVATGLSQG--------ILAQIWNLADMDSDG 331
KLK+ +L+ D +G + + ++ +A G + +++ D+++DG
Sbjct: 94 KLKWYFKLY---DADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDG 150
Query: 332 QLSCDEFVLAM 342
+L+ +EF+ M
Sbjct: 151 ELTLEEFINGM 161
Score = 34.4 bits (79), Expect = 0.050
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 387 NVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQ---SGLPVATLGQIWSLADTDQDGK 443
V E + F P +G+ T + K L + + Q+++ DT++DG
Sbjct: 15 AVPTQETHVWYRTFMMEYP-SGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGF 73
Query: 444 MNINEFVIACKLISNKLRG 462
++ EF+ A ++ ++
Sbjct: 74 VDFLEFIAA---VNLIMQE 89
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 1e-05
Identities = 87/506 (17%), Positives = 143/506 (28%), Gaps = 181/506 (35%)
Query: 11 EAVPDPMAGI-----GQ----TSFEDKRKENYEKGQAELERRRKALELPHQSSFNRALCA 61
AV + A + GQ FE+ R + Y+ + +L S+ L
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELR-DLYQTYHVLVG------DLIKFSA--ETLSE 197
Query: 62 TTPHHETSSSAHNPG-----W----DSTPGSS--CSASHTSATNGPCHP-SLTSPTHWYL 109
+ G W +TP S P S P +
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI-----------PISC--PLIGVI 244
Query: 110 QGKKYHTHVFTAGQFCMTIQAKGGYLIVSGGGSGPSPLSTSIVSPPNTVAPPSSTTPLIP 169
Q + +T + G +P + T
Sbjct: 245 Q----------LAHYVVTAKLLG-------------------FTPGELRSYLKGATGHSQ 275
Query: 170 GITSPPGTLQGGITSPVSIIPGATSPP----NVPAAITKL----------TPPGPLTPD- 214
G+ +T+ I S +V AIT L P L P
Sbjct: 276 GL----------VTA--VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 215 ---------KPPAPVESPWGAFINGWLSTK--EKDLEVNNSNLVDLKKTLANMMSDSEKL 263
P+P+ S I+ L+ + + + NS+L K + +S L
Sbjct: 324 LEDSLENNEGVPSPMLS-----ISN-LTQEQVQDYVNKTNSHL-PAGKQVE--IS----L 370
Query: 264 YN-----VLGGPP--LEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATG-L-- 313
N V+ GPP L K K + D++R F R + + L
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAP---SGLDQSRIPF----SERKLKFSNRFLPV 423
Query: 314 -----SQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPI---DMIPP 365
S +L +L + D L + + D+ +IPV D+
Sbjct: 424 ASPFHSH-LLVPASDLINKD----LVKNNVSF--NAKDI-----QIPVYDTFDGSDL--- 468
Query: 366 AFRRQRQNSVT--LAANVAMDP--WNVSRHERTRFETHFQAMKP--VNGI--VTGDQVKG 417
R S++ + + P W + + TH P +G+ +T G
Sbjct: 469 ---RVLSGSISERIVDCIIRLPVKWETTTQFKA---THILDFGPGGASGLGVLTHRNKDG 522
Query: 418 FLMQSGLPVATLGQIWSLADTDQDGK 443
+G+ V G + D D K
Sbjct: 523 ----TGVRVIVAGTLDINPDDDYGFK 544
Score = 41.2 bits (96), Expect = 0.001
Identities = 62/356 (17%), Positives = 95/356 (26%), Gaps = 120/356 (33%)
Query: 108 YLQGKKYHTHVFTAGQFCMTIQAKGGYLIVSGGGSGPSPLSTSIVSPPNTVAPPSSTTPL 167
YL+G H Q T K LI + ++ I++ +S L
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNY-------ITARIMAKRPFDKKSNS--AL 145
Query: 168 IPGITSPPGTL------QGGITSPV----SIIPGATSPPNVPAAITKLTPP-GPLTPDKP 216
+ L QG + T V I L
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDL--YQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 217 PAPVESPWGAFINGWLSTKEK--DLEVNNSNLVDLKKTLANMMSDSEKLYNVLGGPPLEW 274
A G I WL D + S + PL
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC---------------------PL-- 240
Query: 275 AVPHASKLKYTQL--FNTTDRTRSGFLSGPQARNIMVATGLSQGIL-AQIWNLADMDSDG 331
+ QL + T + GF G + ATG SQG++ A +A+ DS
Sbjct: 241 -------IGVIQLAHYVVTAKL-LGFTPGELRSYLKGATGHSQGLVTAVA--IAETDSW- 289
Query: 332 QLSCDEF----VLAMHL-------C---------------DLAKGGEKIPVPLPIDMIPP 365
+ F A+ + C D + E +P P M+
Sbjct: 290 ----ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP----ML-- 339
Query: 366 AFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPV-----NG----IVTG 412
S++ + V + + +H A K V NG +V+G
Sbjct: 340 --------SIS-----NLTQEQVQDYVN-KTNSHLPAGKQVEISLVNGAKNLVVSG 381
Score = 37.0 bits (85), Expect = 0.017
Identities = 39/231 (16%), Positives = 62/231 (26%), Gaps = 66/231 (28%)
Query: 5 EGVPGTEAVPDPMAGIGQTSFEDKRKENYEKGQAELERRRKALELPHQSS-----FN--- 56
+ + E VP PM I E+ Q + + LP N
Sbjct: 326 DSLENNEGVPSPMLSI--------SNLTQEQVQDYVNKTNS--HLPAGKQVEISLVNGAK 375
Query: 57 --------RALCATTPHHETSSSAHNPGWDST--PGSS--CSASH----TSATNGPCH-P 99
++L + + G D + P S S+ ++ P H
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAP--SGLDQSRIPFSERKLKFSNRFLPVAS---PFHSH 430
Query: 100 SLTSPTHWYLQGKKYHTHVFTAGQFCMTIQAKGGYLIVSG------GGSGPSPLSTSIVS 153
L + + + F A + + Y G GS + I+
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPV-----YDTFDGSDLRVLSGSISERIVDCIIR 485
Query: 154 PPN--TVAPPSSTTPLI---PGITSPPGTL-----QG-GITSPVSIIPGAT 193
P T ++ PG S G L G G V +I T
Sbjct: 486 LPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTG----VRVIVAGT 532
Score = 28.1 bits (62), Expect = 8.0
Identities = 38/223 (17%), Positives = 65/223 (29%), Gaps = 89/223 (39%)
Query: 301 GPQARNIMVATGL----SQGILAQIWNLAD---MDSDGQLSCDEFVLAMHLCDLAKGGEK 353
G Q + M G+ + +WN AD D+ G F + D+
Sbjct: 1625 GSQEQG-M---GMDLYKTSKAAQDVWNRADNHFKDTYG------FSIL----DIVINN-- 1668
Query: 354 IPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSR------HERTR---FE------- 397
PV L I +R R+N + +D + +E + F
Sbjct: 1669 -PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727
Query: 398 -THF-Q-AMKPV----------NGIVTGDQVKGFLMQSGLPV------ATLGQIWSLADT 438
T F Q A+ + G++ D F +G + A+L + S+
Sbjct: 1728 ATQFTQPALTLMEKAAFEDLKSKGLIPADAT--F---AGHSLGEYAALASLADVMSIES- 1781
Query: 439 DQDGKMNINEFVIACKLISNKLRGFDIPPTLPVSLMQSLAGKD 481
+++ RG MQ +D
Sbjct: 1782 -------------LVEVV--FYRG---------MTMQVAVPRD 1800
Score = 28.1 bits (62), Expect = 9.3
Identities = 36/255 (14%), Positives = 68/255 (26%), Gaps = 85/255 (33%)
Query: 272 LE--WAVPHASKLKYTQLFNTTDRTRSGFLSG-PQARNIMVATGLSQG--------ILAQ 320
LE VP AS +QL + F P+ G + ++ +
Sbjct: 16 LEHVLLVPTASFFIASQL-------QEQFNKILPEP-----TEGFAADDEPTTPAELVGK 63
Query: 321 IWN-LADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQ--RQNSV-T 376
++ + ++ + VL + L + F N +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTE--------------------FENCYLEGNDIHA 103
Query: 377 LAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATL-----GQ 431
LAA + + + + + A G A L GQ
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 432 -----IWS-LADTDQDGKMNINEFVIAC-----KLISNKL-------RGFDI-------- 465
+ L D Q + + + + +LI L +G +I
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 466 --PP-----TLPVSL 473
P ++P+S
Sbjct: 224 NTPDKDYLLSIPISC 238
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 44.8 bits (106), Expect = 1e-05
Identities = 27/177 (15%), Positives = 58/177 (32%), Gaps = 47/177 (26%)
Query: 286 QLFNTTDR----TRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLA 341
+ F T T F +N+ + + + Q++ D + DG + E+V A
Sbjct: 21 KKFMTECPSGQLTLYEFKQFFGLKNL---SPSANKYVEQMFETFDFNKDGYIDFMEYVAA 77
Query: 342 MHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAM-DPWN---VSRHERTRFE 397
+ L K +K+ F+ + D + R E
Sbjct: 78 LSLVLKGKVDQKLRW---------YFK--------------LYDVDGNGCIDRGE---LL 111
Query: 398 THFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACK 454
+A++ +N + F ++ D + DG++++ EF+ +
Sbjct: 112 NIIKAIRAINRCNEAMTAEEFTNM----------VFDKIDINGDGELSLEEFMEGVQ 158
Score = 38.2 bits (89), Expect = 0.003
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 281 KLKYT-QLFNTTDRTRSGFLSGPQARNIMVATGLSQG---------ILAQIWNLADMDSD 330
KL++ +L+ D +G + + NI+ A +++ D++ D
Sbjct: 89 KLRWYFKLY---DVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGD 145
Query: 331 GQLSCDEFVLAM 342
G+LS +EF+ +
Sbjct: 146 GELSLEEFMEGV 157
Score = 31.7 bits (72), Expect = 0.33
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 387 NVSRHERTRFETHFQAMKPVNGIVTGDQVKGFL---MQSGLPVATLGQIWSLADTDQDGK 443
+S E ++ F P +G +T + K F S + Q++ D ++DG
Sbjct: 10 ELSATECHQWYKKFMTECP-SGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGY 68
Query: 444 MNINEFVIACKLISNKLRG 462
++ E+V A +S L+G
Sbjct: 69 IDFMEYVAA---LSLVLKG 84
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 44.5 bits (106), Expect = 2e-05
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 43/169 (25%)
Query: 284 YTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLA 341
+LF D SG ++ + ++ + G L + + + + AD+D G + EF+ A
Sbjct: 12 LKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAA 71
Query: 342 MHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQ 401
+ + + AF +F
Sbjct: 72 T---------VHLNKLEREENLVSAFS------------------------------YFD 92
Query: 402 AMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFV 450
K +G +T D+++ GL + + D D DG+++ EF
Sbjct: 93 --KDGSGYITLDEIQQACKDFGLDDIHIDDMIKEIDQDNDGQIDYGEFA 139
Score = 42.2 bits (100), Expect = 1e-04
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F D+ SG+++ + + GL + + D D+DGQ+ EF M
Sbjct: 89 SYF---DKDGSGYITLDEIQQACKDFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMM 142
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 44.0 bits (104), Expect = 3e-05
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F+ D+ ++G ++ + + A G S + + + D+D GQL DE
Sbjct: 115 FDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQH 171
Score = 43.3 bits (102), Expect = 5e-05
Identities = 24/188 (12%), Positives = 56/188 (29%), Gaps = 48/188 (25%)
Query: 283 KYTQLFNTTDRTRSGFLS-----GPQARNIMVATG-------LSQGILAQIWNLADMDSD 330
++ +FN D +G +S + ++ G + + + A M
Sbjct: 17 RHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYG 76
Query: 331 GQLSCDEFVLAMH--LCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNV 388
+ ++ D + K L F +D
Sbjct: 77 VETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFD-------------IVD---- 119
Query: 389 SRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVAT--LGQIWSLADTDQDGKMNI 446
K NG +T D+ K + +G+ ++ + + + D D+ G++++
Sbjct: 120 ---------------KDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDV 164
Query: 447 NEFVIACK 454
+E
Sbjct: 165 DEMTRQHL 172
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 45.5 bits (108), Expect = 3e-05
Identities = 13/64 (20%), Positives = 27/64 (42%)
Query: 280 SKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFV 339
SK K F D+ +G +S + ++ L ++ + D ++DG + +EF
Sbjct: 424 SKDKLESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFC 483
Query: 340 LAMH 343
+
Sbjct: 484 KMIQ 487
Score = 43.9 bits (104), Expect = 1e-04
Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 11/140 (7%)
Query: 318 LAQIWNLADMDSDGQLSCDEF--VLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSV 375
L I+ D + DGQL E + + + + +D I A R +
Sbjct: 348 LTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYI 407
Query: 376 T----LAANVAMDPWNVSRHERTRFETHFQAM-KPVNGIVTGDQVKGFLMQSGLPVATLG 430
+ AMD ++ + + E+ FQ + NG ++ D++ L T
Sbjct: 408 DYSEFVTV--AMDRKSLLS--KDKLESAFQKFDQDGNGKISVDELASVFGLDHLESKTWK 463
Query: 431 QIWSLADTDQDGKMNINEFV 450
++ S D++ DG ++ EF
Sbjct: 464 EMISGIDSNNDGDVDFEEFC 483
Score = 34.7 bits (80), Expect = 0.063
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 11/66 (16%)
Query: 399 HFQAM-KPVNGIVTGDQVKGFLMQSGLPVATLG----------QIWSLADTDQDGKMNIN 447
F+ + K +G + ++ + + I AD D++G ++ +
Sbjct: 351 IFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYS 410
Query: 448 EFVIAC 453
EFV
Sbjct: 411 EFVTVA 416
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 43.1 bits (102), Expect = 4e-05
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 278 HASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSC 335
A+ + + F T D+ SG + + R + G LS L I +G++
Sbjct: 66 WAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYS--KNGRIFF 123
Query: 336 DEFVLAM 342
D++V
Sbjct: 124 DDYVACC 130
Score = 32.0 bits (73), Expect = 0.23
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 396 FETHFQAMKPVNGIVTGDQVKGFLMQSG-------LPVATLGQIWSLADTDQDGKMNINE 448
T+F A+ +G V ++++ L QSG + T + ++ D D GKM N
Sbjct: 2 VYTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNA 61
Query: 449 FVIACKLISNKLRG----FD 464
F + N + D
Sbjct: 62 FKELWAAL-NAWKENFMTVD 80
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 45.1 bits (107), Expect = 4e-05
Identities = 29/253 (11%), Positives = 66/253 (26%), Gaps = 88/253 (34%)
Query: 223 PWGAFINGWLSTKEKDLEVNNSNLVDLKK-------------TLANMMSDSEKLYNVLGG 269
W + + D + L +++K + + ++ E+
Sbjct: 303 RW--IKKYANNINKSDQKTLCGALSNMRKFEGSQKLAQAAILFIGSKLTTLEER------ 354
Query: 270 PPLEWAVPHASKLKYTQLFNTTDRTRSGFLS----------GPQARNIMVATGLSQGILA 319
+L +F D+ G L +N + + +
Sbjct: 355 ----------KELT--DIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVD 402
Query: 320 QIWNLADMDSDGQLSCDEFVLA-MHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLA 378
I D D +G + EF+ M ++ +
Sbjct: 403 NILKEVDFDKNGYIEYSEFISVCMD------------------------KQILFS----- 433
Query: 379 ANVAMDPWNVSRHERTRFETHFQAM-KPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLAD 437
R F +G +T +++ + + T + AD
Sbjct: 434 --------------EERLRRAFNLFDTDKSGKITKEELANLFGLTSISEKTWNDVLGEAD 479
Query: 438 TDQDGKMNINEFV 450
++D ++ +EFV
Sbjct: 480 QNKDNMIDFDEFV 492
Score = 44.3 bits (105), Expect = 7e-05
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 280 SKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFV 339
S+ + + FN D +SG ++ + N+ T +S+ + AD + D + DEFV
Sbjct: 433 SEERLRRAFNLFDTDKSGKITKEELANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEFV 492
Query: 340 LAMH 343
MH
Sbjct: 493 SMMH 496
Score = 35.8 bits (83), Expect = 0.033
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 389 SRHERTRFETHFQAM-KPVNGIVTGDQVKGFLMQSGLPVATLG----------QIWSLAD 437
+ ER F+ + K +G + ++ LG I D
Sbjct: 350 TLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVD 409
Query: 438 TDQDGKMNINEFVIAC 453
D++G + +EF+ C
Sbjct: 410 FDKNGYIEYSEFISVC 425
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 43.1 bits (102), Expect = 4e-05
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 283 KYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVL 340
+ Q F + D RSG + + + + G L+ + I + G+++ D+++
Sbjct: 73 GWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSI--AKRYSTSGKITFDDYIA 130
Query: 341 AM 342
Sbjct: 131 CC 132
Score = 33.5 bits (77), Expect = 0.065
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 396 FETHFQAMKPVNGIVTGDQVKGFLMQSG-------LPVATLGQIWSLADTDQDGKMNINE 448
+F ++ +G + D+++ L QSG + T + S+ D D G M NE
Sbjct: 4 LYGYFASVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNE 63
Query: 449 FVIACKLISNKLRGF 463
F +++ + F
Sbjct: 64 FKELWAVLNGWRQHF 78
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 44.7 bits (106), Expect = 5e-05
Identities = 13/64 (20%), Positives = 27/64 (42%)
Query: 280 SKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFV 339
S+ + + F D SG +S + I + + + + D ++DG++ DEF
Sbjct: 416 SRERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQ 475
Query: 340 LAMH 343
+
Sbjct: 476 QMLL 479
Score = 44.7 bits (106), Expect = 5e-05
Identities = 27/180 (15%), Positives = 52/180 (28%), Gaps = 56/180 (31%)
Query: 285 TQLFNTTDRTRSGFLS-------------GPQARNIMVATGLSQGILAQIWNLADMDSDG 331
T +F+ D+ G L M+ + + Q+ + D D +G
Sbjct: 338 TAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNG 397
Query: 332 QLSCDEFVLA-MHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSR 390
+ EFV M L + + A
Sbjct: 398 YIEYSEFVTVAMDRKTL----------------------LSRERLERA------------ 423
Query: 391 HERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFV 450
F F + +G ++ ++ S + T + S D + DG+++ +EF
Sbjct: 424 -----FR-MFDSDN--SGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQ 475
Score = 33.1 bits (76), Expect = 0.23
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 14/80 (17%)
Query: 388 VSRHERTRFETHFQAM-KPVNGIVTGDQVKGFLMQSGLPVATLG-------------QIW 433
S+ E F M K +G + ++ + Q+
Sbjct: 329 TSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVL 388
Query: 434 SLADTDQDGKMNINEFVIAC 453
D D++G + +EFV
Sbjct: 389 DAVDFDKNGYIEYSEFVTVA 408
Score = 32.4 bits (74), Expect = 0.40
Identities = 20/120 (16%), Positives = 46/120 (38%), Gaps = 21/120 (17%)
Query: 237 KDLEVNNSNLV---DLKKTLANMMSDSEKLYNVLGGPPLEWAVPHASKLKYTQLFNTTDR 293
++ N + +L + +M + ++L +E V Q+ + D
Sbjct: 342 HKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVD--------QVLDAVDF 393
Query: 294 TRSG------FLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDL 347
++G F++ R + LS+ L + + + D D+ G++S E + D+
Sbjct: 394 DKNGYIEYSEFVTVAMDRKTL----LSRERLERAFRMFDSDNSGKISSTELATIFGVSDV 449
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 43.2 bits (102), Expect = 5e-05
Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 241 VNNSNLVDLK---KTLANMMSDSEKLYNVLGGPPLEWAVPHASKLKYTQLFNTTDRTRSG 297
+ S VD + LA+ ++ E +KL Y F D R G
Sbjct: 72 PDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHY--AFQLYDLDRDG 129
Query: 298 FLSGPQARNIMVATG---LSQGILAQIWNL----ADMDSDGQLSCDEFVLAMHLCDLAK 349
+S + ++ +++ L I + AD D DG +S EF ++ D+ +
Sbjct: 130 KISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEKMDVEQ 188
Score = 37.4 bits (87), Expect = 0.005
Identities = 32/178 (17%), Positives = 52/178 (29%), Gaps = 45/178 (25%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQ-IWNLADMDSDGQLSCDEFVLAMHL 344
F DR + G+LS ++ L+ L I D ++ FV +
Sbjct: 33 HRFRALDRNKKGYLS---RMDLQQIGALAVNPLGDRIIESFFPDGSQRVDFPGFVRVLA- 88
Query: 345 CDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMK 404
FR +P N SR + + FQ
Sbjct: 89 ---------------------HFRPVEDEDTETQDPKKPEPLN-SRRNKLHYA--FQ--- 121
Query: 405 PV-----NGIVTGD---QVKGFLMQSGLPVATLGQIWSL----ADTDQDGKMNINEFV 450
+ +G ++ QV ++ + L I AD D DG ++ EF
Sbjct: 122 -LYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFT 178
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 42.9 bits (102), Expect = 5e-05
Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 43/169 (25%)
Query: 284 YTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLA 341
++FN D +SG ++ + + + G L + + + AD+D+ G + EF+ A
Sbjct: 29 LKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAA 88
Query: 342 MHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQ 401
+ D + AF +F
Sbjct: 89 T---------LHLNKIEREDHLFAAFT------------------------------YFD 109
Query: 402 AMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFV 450
K +G +T D+++ + G+ + ++ D D DG+++ NEFV
Sbjct: 110 --KDGSGYITPDELQQACEEFGVEDVRIEELMRDVDQDNDGRIDYNEFV 156
Score = 42.5 bits (101), Expect = 6e-05
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F D+ SG+++ + + G+ + ++ D D+DG++ +EFV M
Sbjct: 105 FTYFDKDGSGYITPDELQQACEEFGVEDVRIEELMRDVDQDNDGRIDYNEFVAMM 159
Score = 29.0 bits (66), Expect = 2.3
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 407 NGIVTGDQVKGFLMQSGLPV--ATLGQIWSLADTDQDGKMNINEFVIACK 454
+G +T +++K L + G + + + + AD D G ++ EF+ A
Sbjct: 41 SGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKEFIAATL 90
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 43.4 bits (102), Expect = 6e-05
Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 33/153 (21%)
Query: 320 QIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAA 379
++N D G + ++FV A+ + EK+ F
Sbjct: 93 YLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRW---------TFNL---------- 133
Query: 380 NVAMDPWN---VSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLA 436
D +++ E +A+ + G T +K + + +
Sbjct: 134 ---YDINKDGYINKEE---MMDIVKAIYDMMGKYTYPVLKEDTPRQ-----HVDVFFQKM 182
Query: 437 DTDQDGKMNINEFVIACKLISNKLRGFDIPPTL 469
D ++DG + ++EF+ +C+ N +R + +
Sbjct: 183 DKNKDGIVTLDEFLESCQEDDNIMRSLQLFQNV 215
Score = 36.1 bits (83), Expect = 0.013
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 16/76 (21%)
Query: 281 KLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQG--------------ILAQIWNLAD 326
KL++ FN D + G+++ + +I+ A G + + D
Sbjct: 126 KLRW--TFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMD 183
Query: 327 MDSDGQLSCDEFVLAM 342
+ DG ++ DEF+ +
Sbjct: 184 KNKDGIVTLDEFLESC 199
Score = 30.3 bits (68), Expect = 0.94
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 389 SRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSG--LPVATLGQ-IWSLADTDQDGKMN 445
++ E F+ P +G+V + K Q +T +++ DT Q G +
Sbjct: 49 TKRELQVLYRGFKNECP-SGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVK 107
Query: 446 INEFVIACKLISN-----KL----RGFDI 465
+FV A ++ KL +DI
Sbjct: 108 FEDFVTALSILLRGTVHEKLRWTFNLYDI 136
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 43.3 bits (102), Expect = 7e-05
Identities = 27/209 (12%), Positives = 52/209 (24%), Gaps = 30/209 (14%)
Query: 301 GPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAM-HLCDLAKGGEKIPVPLP 359
G A + + ++ ++ +IW D D G L E + L K P
Sbjct: 1 GSMAESHLQSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEM 60
Query: 360 IDMIPPA------------FRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPVN 407
+ + + +
Sbjct: 61 KTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWR-KYDTDH--S 117
Query: 408 GIVTGDQVKGFLMQSGLPVATLGQIWSL----------ADTDQDGKMNINEFVIACKLIS 457
G + +++K FL L D++ DGK+ + E +
Sbjct: 118 GFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQE 177
Query: 458 NKLRGFDIPPTLPVSLMQSLAGKDKTYDK 486
N L F ++ + YD+
Sbjct: 178 NFLLKFQGIKMCGKEFNKAF----ELYDQ 202
Score = 39.9 bits (93), Expect = 0.001
Identities = 24/232 (10%), Positives = 60/232 (25%), Gaps = 57/232 (24%)
Query: 237 KDLEVNNSNLVDLKKTLANMMSDSEKLYNVLGGPPLEWAVPHASKLKYTQLFNTTDRTRS 296
+ + + LA+++ E + L+ S ++ + + D S
Sbjct: 65 DQYGQRDDGKIGIV-ELAHVLPTEENFLLLFRCQQLK------SCEEFMKTWRKYDTDHS 117
Query: 297 GFLSGPQARNIMVATGLSQGILAQIWNL----------ADMDSDGQLSCDEFVLAMHLCD 346
GF+ + +N + L D ++DG+L E + + +
Sbjct: 118 GFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQE 177
Query: 347 LAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPV 406
+ + AF + +
Sbjct: 178 NFLLKFQGIKMCGKEFN-KAFE------------------------------LYD--QDG 204
Query: 407 NGIVTGDQVKGFLMQSGLPV---ATLGQIW----SLADTDQDGKMNINEFVI 451
NG + +++ L + I ++ GK+ + +
Sbjct: 205 NGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLAL 256
Score = 36.8 bits (85), Expect = 0.011
Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 15/113 (13%)
Query: 237 KDLEVNNSNLVDLKKTLANMMSDSEKLYNVLGGPPLEWAVPHASKLKYTQLFNTTDRTRS 296
K + NN ++L + +A ++ E G ++ + F D+ +
Sbjct: 154 KLFDSNNDGKLELTE-MARLLPVQENFLLKFQGIK-------MCGKEFNKAFELYDQDGN 205
Query: 297 GFLSGPQARNIMVATG-------LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
G++ + ++ I N+ + G+L + L +
Sbjct: 206 GYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLALIL 258
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 44.4 bits (104), Expect = 7e-05
Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 30/193 (15%)
Query: 283 KYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVL 340
Y +F D +SG +S + R + A G L + I D + + D FV
Sbjct: 608 NYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVARFA-DDELIIDFDNFVR 666
Query: 341 AM----------HLCDLAKGGEKIPVPLPID-MIPPAFRRQRQNSVTLAANVAMDPWNVS 389
+ D G + L + + + + ++ + M N+
Sbjct: 667 CLVRLEILFKIFKQLDPENTGT---IQLDLISWLSFSVLGKLAAAIEHHHHHHMHYSNIE 723
Query: 390 RHER---TRFETHFQAMKPVNGIVTGDQVKGFLMQ----------SGLPVATLGQIWSLA 436
+E +F F + + V+ ++ L + G + T + ++
Sbjct: 724 ANESEEERQFRKLFVQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVM 783
Query: 437 DTDQDGKMNINEF 449
D+D GK+ EF
Sbjct: 784 DSDTTGKLGFEEF 796
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 42.8 bits (101), Expect = 7e-05
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 278 HASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSC 335
A + Q F + D RSG + + + + G LS + I ++G+++
Sbjct: 99 WAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY--STNGKITF 156
Query: 336 DEFVLAM 342
D+++
Sbjct: 157 DDYIACC 163
Score = 29.7 bits (67), Expect = 1.7
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 395 RFETHFQAMKPVNGIVTGDQVKGFLMQSG-------LPVATLGQIWSLADTDQDGKMNIN 447
+F A+ +G + D+++ L QSG + T + S+ D D G M N
Sbjct: 34 PLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFN 93
Query: 448 EFV 450
EF
Sbjct: 94 EFK 96
Score = 27.4 bits (61), Expect = 9.0
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 8/83 (9%)
Query: 268 GGPPLEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVA-------TGLSQGILAQ 320
GG P A P ++ F + G + + + + +
Sbjct: 19 GGAPGGPAFPGQTQDPLYGYFAA-VAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRL 77
Query: 321 IWNLADMDSDGQLSCDEFVLAMH 343
+ ++ D D G + +EF
Sbjct: 78 MVSMLDRDMSGTMGFNEFKELWA 100
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 41.8 bits (99), Expect = 1e-04
Identities = 31/169 (18%), Positives = 55/169 (32%), Gaps = 42/169 (24%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343
+ F T + SG +S Q I+ G ++ + Q+ + D +G + D F +
Sbjct: 20 RDFETPEG--SGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIG- 76
Query: 344 LCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAM 403
GE++ + AFR D
Sbjct: 77 ---ARFLGEEVNPEQMQQELREAFR-------------LYD------------------- 101
Query: 404 KPVNGIVTGDQVKGFLMQSG--LPVATLGQIWSLADTDQDGKMNINEFV 450
K NG ++ D ++ L + L L + D D G ++ EF+
Sbjct: 102 KEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFM 150
Score = 36.4 bits (85), Expect = 0.007
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
+L+ D+ +G++S R I+ LS L + + D D G + +EF+ M
Sbjct: 98 RLY---DKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGVM 153
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 42.7 bits (100), Expect = 1e-04
Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 36/151 (23%)
Query: 320 QIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAA 379
++N D D +G + ++FV+ + + EK+ AF
Sbjct: 133 FLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKW---------AFNL---------- 173
Query: 380 NVAMDPWN---VSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLA 436
D +++ E M + + P+ + + +
Sbjct: 174 ---YDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDA--------PLEHVERFFQKM 222
Query: 437 DTDQDGKMNINEFVIACK---LISNKLRGFD 464
D +QDG + I+EF+ C+ I N ++ F+
Sbjct: 223 DRNQDGVVTIDEFLETCQKDENIMNSMQLFE 253
Score = 37.3 bits (86), Expect = 0.007
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 16/76 (21%)
Query: 281 KLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQG--------------ILAQIWNLAD 326
KLK+ FN D + G ++ + IM + G + + + D
Sbjct: 166 KLKWA--FNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMD 223
Query: 327 MDSDGQLSCDEFVLAM 342
+ DG ++ DEF+
Sbjct: 224 RNQDGVVTIDEFLETC 239
Score = 32.7 bits (74), Expect = 0.20
Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 20/157 (12%)
Query: 333 LSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHE 392
+ + + + + + R + + ++ E
Sbjct: 37 FTRQALMRCCLIKWILSSAAPQGSDSSDSELELSTVRHQPEGLDQL----QAQTKFTKKE 92
Query: 393 RTRFETHFQAMKPVNGIVTGDQVKGFLMQ---SGLPVATLGQIWSLADTDQDGKMNINEF 449
F+ P G+V D K Q G +++ D D +G ++ +F
Sbjct: 93 LQSLYRGFKNECP-TGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDF 151
Query: 450 VIACKLISNKLRGFDIPPTLPVSLMQSLAGKDKTYDK 486
V+ +S LRG ++ + L YD
Sbjct: 152 VVG---LSILLRG---------TVHEKLKWAFNLYDI 176
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 39.1 bits (92), Expect = 1e-04
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
LF D G +S + + + ++ +L I+ D D +G++ +EF
Sbjct: 4 ALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Score = 34.5 bits (80), Expect = 0.006
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 317 ILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKI 354
+ ++ D++ DG +S +E + K + +
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLL 38
Score = 30.6 bits (70), Expect = 0.13
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 407 NGIVTGDQVKGFLMQSGLPV--ATLGQIWSLADTDQDGKMNINEFVIACKLI 456
+G V+ ++VK F+ + L I+ D D +G+++ NEF I
Sbjct: 14 DGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSI 65
Score = 29.8 bits (68), Expect = 0.24
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 429 LGQIWSLADTDQDGKMNINEFVIACKLISNKL 460
++ D + DG ++ E
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIK 33
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 42.1 bits (99), Expect = 1e-04
Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 28/173 (16%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQ-IWNLADMDSDGQLSCDEFVLAMHL 344
F + D+ +G LS + I L+ L I N + + Q++ F+ +
Sbjct: 33 SRFTSLDKGENGTLSREDFQRIP---ELAINPLGDRIINAFFSEGEDQVNFRGFMRTL-- 87
Query: 345 CDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWN---VSRHERTRFETHFQ 401
A D+ P R N + A + D +SR E
Sbjct: 88 ---AHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRL-YDLDKDDKISRDE--------- 134
Query: 402 AMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACK 454
+ V ++ G + + S + AD D D ++ EFV +
Sbjct: 135 -LLQVLRMMVGVNISDEQLGS-----IADRTIQEADQDGDSAISFTEFVKVLE 181
Score = 39.0 bits (91), Expect = 0.001
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 10/106 (9%)
Query: 251 KTLANMMSDSEKLYNVLGGPPLEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVA 310
+TLA+ + + P ++KL + F D + +S + ++
Sbjct: 85 RTLAHFRPIEDNEKSKDVNGPEPLN-SRSNKLHF--AFRLYDLDKDDKISRDELLQVLRM 141
Query: 311 T---GLS----QGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAK 349
+S I + AD D D +S EFV + D+ +
Sbjct: 142 MVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQ 187
Score = 31.3 bits (71), Expect = 0.52
Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 13/106 (12%)
Query: 389 SRHERTRFETHFQAM-KPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNIN 447
S + TR + F ++ K NG ++ + + + +I + ++ + ++N
Sbjct: 24 SHSQITRLYSRFTSLDKGENGTLSREDFQ--RIPELAINPLGDRIINAFFSEGEDQVNFR 81
Query: 448 EFVIACKLISNKLRGFDIPPTLPVSLMQSLAGKD-------KTYDK 486
F+ ++ D + V+ + L + + YD
Sbjct: 82 GFMRTL---AHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDL 124
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 41.9 bits (99), Expect = 1e-04
Identities = 27/181 (14%), Positives = 51/181 (28%), Gaps = 54/181 (29%)
Query: 283 KYTQLFNTTDRTRSGFLS-----------GPQARNIMVATG--LSQGILAQIWNLADMDS 329
+ TQ+F D G L + + + + I D D
Sbjct: 41 ELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDR 100
Query: 330 DGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVS 389
+G + EFV D + + + AF+
Sbjct: 101 NGYIEYSEFVTVC--MDKQLLLSR-------ERLLAAFQ--------------------- 130
Query: 390 RHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEF 449
F +G +T +++ + + T Q+ D + DG+++ EF
Sbjct: 131 ---------QFD--SDGSGKITNEELGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEF 179
Query: 450 V 450
V
Sbjct: 180 V 180
Score = 40.3 bits (95), Expect = 4e-04
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMH-LCD 346
F D SG ++ + + T + Q+ D ++DG++ +EFV M +CD
Sbjct: 129 FQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQKICD 188
Score = 28.0 bits (63), Expect = 4.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 429 LGQIWSLADTDQDGKMNINEFVIAC 453
+ I D D++G + +EFV C
Sbjct: 89 VDHILQSVDFDRNGYIEYSEFVTVC 113
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 38.7 bits (91), Expect = 3e-04
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
+LF D SG ++ + ++ + G L + + + + AD+D G + EF+ A
Sbjct: 27 ELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAAT 85
Score = 27.9 bits (63), Expect = 2.3
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 407 NGIVTGDQVKGFLMQSGLPV--ATLGQIWSLADTDQDGKMNINEFVIA 452
+G +T D++K L + G + + + + AD D+ G ++ EF+ A
Sbjct: 37 SGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAA 84
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 41.2 bits (97), Expect = 3e-04
Identities = 31/177 (17%), Positives = 57/177 (32%), Gaps = 53/177 (29%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343
+ F DR S L + R + G L Q + D + G L +EF+ A+
Sbjct: 41 RFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRAL- 99
Query: 344 LCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAM 403
+ +I AF + +D R+
Sbjct: 100 ---RPPMSQA-----REAVIAAAFAK-------------LD--------RSG-------- 122
Query: 404 KPVNGIVTGDQVKGFLMQSGLPVATLGQ----------IWSLADTDQDGKMNINEFV 450
+G+VT D ++G P G+ + + +++DG++ + EF
Sbjct: 123 ---DGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQ 176
Score = 33.5 bits (77), Expect = 0.10
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 407 NGIVTGDQVKGFLMQSGLPV--ATLGQIWSLADTDQDGKMNINEFVIA 452
+ + D+ + L + GL + A + D + G +++ EF+ A
Sbjct: 51 SRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRA 98
Score = 28.5 bits (64), Expect = 3.5
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 426 VATLGQIWSLADTDQDGKMNINEFVIACK 454
+ L + + D D ++ +EF
Sbjct: 36 IQGLARFFRQLDRDGSRSLDADEFRQGLA 64
Score = 28.5 bits (64), Expect = 3.6
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 318 LAQIWNLADMDSDGQLSCDEFVLAMH 343
LA+ + D D L DEF +
Sbjct: 39 LARFFRQLDRDGSRSLDADEFRQGLA 64
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 41.3 bits (97), Expect = 3e-04
Identities = 9/62 (14%), Positives = 17/62 (27%), Gaps = 3/62 (4%)
Query: 283 KYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVL 340
LF R RSG L + + G ++Q + + ++
Sbjct: 118 LAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHR-LFARGMAFCDLNCWIA 176
Query: 341 AM 342
Sbjct: 177 IC 178
Score = 40.9 bits (96), Expect = 3e-04
Identities = 24/172 (13%), Positives = 44/172 (25%), Gaps = 52/172 (30%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFV-LAM 342
Q F DR RSG L + G LS ++ + D D +G +S EF+ +
Sbjct: 55 QWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYK 114
Query: 343 HLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQA 402
+ F +
Sbjct: 115 FMELAYN----------------LFVMNARAR---------------------------- 130
Query: 403 MKPVNGIVTGDQVKGFLMQSGLPV-ATLGQIWSLADTDQDGKMNINEFVIAC 453
+G + ++ L Q G + + ++N ++ C
Sbjct: 131 ----SGTLEPHEILPALQQLGFYINQRTSLLLHRLFARGMAFCDLNCWIAIC 178
Score = 40.5 bits (95), Expect = 5e-04
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 392 ERTRFETHFQAM-KPVNGIVTGDQVKGFLMQSGLPV--ATLGQIWSLADTDQDGKMNINE 448
+ TR F + + +G + +++ G+ + T ++ + DTD +G ++ E
Sbjct: 49 QYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYE 108
Query: 449 FVIACKLISNKLRGFD 464
F+ K + F
Sbjct: 109 FMAMYKFMELAYNLFV 124
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 40.6 bits (95), Expect = 3e-04
Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 33/155 (21%)
Query: 317 ILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVT 376
++ D + DG + EF++A+ + K +K+ AF
Sbjct: 64 FAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKW---------AFS-------- 106
Query: 377 LAANVAMDPWN---VSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIW 433
D +S+ E M + D+ P +I+
Sbjct: 107 -----MYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDEST--------PEKRTEKIF 153
Query: 434 SLADTDQDGKMNINEFVIACKLISNKLRGFDIPPT 468
DT++DGK+++ EF+ K + +R P+
Sbjct: 154 RQMDTNRDGKLSLEEFIRGAKSDPSIVRLLQCDPS 188
Score = 36.7 bits (85), Expect = 0.008
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 16/76 (21%)
Query: 281 KLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQG--------------ILAQIWNLAD 326
KLK+ F+ D +G++S + I+ A +I+ D
Sbjct: 100 KLKWA--FSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMD 157
Query: 327 MDSDGQLSCDEFVLAM 342
+ DG+LS +EF+
Sbjct: 158 TNRDGKLSLEEFIRGA 173
Score = 31.0 bits (70), Expect = 0.64
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 387 NVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVAT---LGQIWSLADTDQDGK 443
+ + HE + F P +G ++ ++ K ++ D + DG
Sbjct: 21 DFTEHEIQEWYKGFLRDCP-SGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGT 79
Query: 444 MNINEFVIACKLISNKLRG 462
++ EF+IA +S RG
Sbjct: 80 IDFREFIIA---LSVTSRG 95
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 42.0 bits (99), Expect = 4e-04
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 280 SKLKYTQLFNTTDRTRSGFLSGPQARNIM--VATGLSQGILAQIWNLADMDSDGQLSCDE 337
S+ + + F D+ SG +S + + + + L I D + DG++ +E
Sbjct: 415 SRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNE 474
Query: 338 FVLAMH 343
FV +
Sbjct: 475 FVEMLQ 480
Score = 40.4 bits (95), Expect = 0.001
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 19/148 (12%)
Query: 318 LAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLP--------IDMIPPAFRR 369
L +I+ D ++DG L DE V H KG + + ID + P
Sbjct: 333 LTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDM 392
Query: 370 QRQNSVT----LAANVAMDPWNVSRHERTRFETHFQAM-KPVNGIVTGDQVKGFL--MQS 422
S+ +A+ A+D + R R E F+ K +G ++ ++ S
Sbjct: 393 DGSGSIEYSEFIAS--AIDRTILLS--RERMERAFKMFDKDGSGKISTKELFKLFSQADS 448
Query: 423 GLPVATLGQIWSLADTDQDGKMNINEFV 450
+ + L I D ++DG+++ NEFV
Sbjct: 449 SIQMEELESIIEQVDNNKDGEVDFNEFV 476
Score = 34.3 bits (79), Expect = 0.094
Identities = 7/53 (13%), Positives = 16/53 (30%)
Query: 401 QAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIAC 453
+ + D + + + L D D G + +EF+ +
Sbjct: 355 RGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSEFIASA 407
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 40.2 bits (94), Expect = 4e-04
Identities = 24/180 (13%), Positives = 54/180 (30%), Gaps = 36/180 (20%)
Query: 296 SGFLSGPQARNIMVATGLSQG---ILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGE 352
SG ++ + I ++N D G + ++FV A+ + E
Sbjct: 33 SGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHE 92
Query: 353 KIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWN---VSRHERTRFETHFQAMKPVNGI 409
K+ F D +++ E +
Sbjct: 93 KLRW---------TFNL-------------YDINKDGYINKEE-------MMDIVKAIYD 123
Query: 410 VTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISNKLRGFDIPPTL 469
+ G L + P + + D ++DG + ++EF+ + + N +R + +
Sbjct: 124 MMGKYTYPVLKEDT-PRQHVDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRSLQLFQNV 182
Score = 35.2 bits (81), Expect = 0.020
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 16/73 (21%)
Query: 281 KLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQG--------------ILAQIWNLAD 326
KL++T FN D + G+++ + +I+ A G + + D
Sbjct: 93 KLRWT--FNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMD 150
Query: 327 MDSDGQLSCDEFV 339
+ DG ++ DEF+
Sbjct: 151 KNKDGIVTLDEFL 163
Score = 31.3 bits (71), Expect = 0.40
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 16/101 (15%)
Query: 389 SRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVAT---LGQIWSLADTDQDGKMN 445
++ E F+ P +G+V + K Q +++ DT Q G +
Sbjct: 16 TKRELQVLYRGFKNEXP-SGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVK 74
Query: 446 INEFVIACKLISNKLRGFDIPPTLPVSLMQSLAGKDKTYDK 486
+FV A +S LRG ++ + L YD
Sbjct: 75 FEDFVTA---LSILLRG---------TVHEKLRWTFNLYDI 103
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 40.7 bits (95), Expect = 4e-04
Identities = 30/205 (14%), Positives = 58/205 (28%), Gaps = 31/205 (15%)
Query: 294 TRSGFLSGPQARNIMVATGLSQGILAQIWNL-ADMDSDGQLSCDEFVLAMHLCDLAKGGE 352
++SG LS + + T S+ L + G+++ +F +
Sbjct: 11 SKSGALSKEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAK----FFPD 66
Query: 353 KIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHER-TRFETHFQAMK----PVN 407
P + +F ++ V + + A N
Sbjct: 67 TDPKAY-AQHVFRSFDSNLDGTLDFKEYVIA----LHMTTAGKTNQKLEWAFSLYDVDGN 121
Query: 408 GIVTGDQVK-----GFLMQSGLPVATLG-----------QIWSLADTDQDGKMNINEFVI 451
G ++ ++V F M + V L +IW + D K+ EF+
Sbjct: 122 GTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIE 181
Query: 452 ACKLISNKLRGFDIPPTLPVSLMQS 476
LR P M++
Sbjct: 182 GTLANKEILRLIQFEPQKVKEKMKN 206
Score = 36.5 bits (84), Expect = 0.009
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 16/76 (21%)
Query: 283 KYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQG----------------ILAQIWNLAD 326
K F+ D +G +S + I++A +IW
Sbjct: 108 KLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFG 167
Query: 327 MDSDGQLSCDEFVLAM 342
+ D +L+ EF+
Sbjct: 168 KNDDDKLTEKEFIEGT 183
Score = 31.5 bits (71), Expect = 0.47
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVAT--GLSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343
+F + D G L + + T G + L ++L D+D +G +S +E + +
Sbjct: 75 HVFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVM 134
Query: 344 LCDLAKGGEKIPVPLPIDMIP 364
E + + + P
Sbjct: 135 AIFKMITPEDVKLLPDDENTP 155
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 39.4 bits (93), Expect = 4e-04
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLC 345
F D SGF+ R ++ G + + +++ A +D G + EF +
Sbjct: 82 FACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRIL--- 138
Query: 346 DLAKGGEK 353
K G K
Sbjct: 139 ---KHGAK 143
Score = 32.5 bits (75), Expect = 0.13
Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 48/167 (28%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLC 345
FN D+ R GF+ +++ + G + L + ++ G ++ F+
Sbjct: 13 FNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGM----MSEAPGPINFTMFLTMF--- 65
Query: 346 DLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKP 405
GEK+ P D+I AF D
Sbjct: 66 -----GEKLNGTDPEDVIRNAFA-------------CFDEEA------------------ 89
Query: 406 VNGIVTGDQVKGFLMQSG--LPVATLGQIWSLADTDQDGKMNINEFV 450
+G + D ++ L G + +++ A D+ G N EF
Sbjct: 90 -SGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFT 135
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 37.5 bits (88), Expect = 5e-04
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
++F D+ + G LS + R + +A +Q + + + D+D +G+L+ DEF +
Sbjct: 5 RVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCI 63
Score = 30.5 bits (70), Expect = 0.16
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 436 ADTDQDGKMNINEFVIACKLISNKL 460
D D +G++N +EF I L
Sbjct: 46 IDVDGNGELNADEFT---SCIEKML 67
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 5e-04
Identities = 34/227 (14%), Positives = 66/227 (29%), Gaps = 56/227 (24%)
Query: 289 NTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLA 348
+ D +S LS + +I+++ G L W L + +FV + L
Sbjct: 37 DVQDMPKS-ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM---VQKFVEEV----LR 88
Query: 349 KGGEKIPVPLPIDMIPPAFRRQR---QNSVTLAANVAMDPWNVSRHER-TRFETHFQAMK 404
+ + P+ + P+ + Q N +NVSR + + ++
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 405 PVNGIV------TGDQV-----------------KGFLMQSGL---PVATLGQIWSL--- 435
P ++ +G K F + P L + L
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 436 --------ADTDQDGKMNINEFVIACKLISNKLRGFDIPPTLPVSLM 474
+D + K+ I+ I +LR L+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHS-------IQAELRRLLKSKPYENCLL 248
Score = 39.1 bits (90), Expect = 0.003
Identities = 52/429 (12%), Positives = 119/429 (27%), Gaps = 118/429 (27%)
Query: 131 KGGYLIVSG-GGSGPSPLSTSIVSPPNTVAPPSSTTPLIPG----ITSPPGTLQGGITSP 185
+++ G GSG + ++ V + + SP
Sbjct: 149 PAKNVLIDGVLGSGKTWVALD-------VCLSYKVQCKMDFKIFWLNL------KNCNSP 195
Query: 186 VSIIPGATSPPNVPAAITKLTPPGPLTPDKPPAPVESPWGAFINGWLSTK--EKDL---- 239
+++ + I + S A + L +K E L
Sbjct: 196 ETVLEMLQ---KLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSKPYENCLLVLL 251
Query: 240 EVNNSNLV---DLK-KTLANMMSDSEKLYNVLGGPPLEWAVPHASKLKYTQLFNTTDRTR 295
V N+ +L K L + + +++ + L H S ++ T D +
Sbjct: 252 NVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAA----TTTHISLDHHSMTL-TPDEVK 304
Query: 296 SGFLSG---------PQARNI------MVATGLSQGI-LAQIWNLADMDSDGQLSCDEFV 339
S L + ++A + G+ W ++CD+
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK--------HVNCDKLT 356
Query: 340 LAMHLC--------------DLA--KGGEKIPVP-LPI---DMIPP-------------- 365
+ L+ IP L + D+I
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 366 AFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQV-KGFLMQSGL 424
++ +++++++ ++ ++ + + H IV + K F +
Sbjct: 417 VEKQPKESTISIP-SIYLE---LKVKLENEYALH-------RSIVDHYNIPKTFDSDDLI 465
Query: 425 PVATLGQIWS-----LADTDQDGKMNI-NEFVIACKLISNKLRGFDIPPTLPVSLMQSLA 478
P +S L + + +M + + + + K+R S++ +L
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 479 GKD-KTYDK 486
K Y
Sbjct: 526 --QLKFYKP 532
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 40.2 bits (94), Expect = 5e-04
Identities = 25/187 (13%), Positives = 60/187 (32%), Gaps = 29/187 (15%)
Query: 299 LSGPQARNIMVATGLSQGILAQIWNL-ADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVP 357
LS + +T + + Q GQL+ ++FV P
Sbjct: 8 LSKDDLTCLKQSTYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYK----QFFPFGSPED 63
Query: 358 LPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPV-----NGIVTG 412
+ + F + + + + +S R E + +G +T
Sbjct: 64 F-ANHLFTVFDKDNNGFIHFEEFITV----LSTTSRGTLEEKLSWAFELYDLNHDGYITF 118
Query: 413 DQVKGFLMQSGLPVATLG--------------QIWSLADTDQDGKMNINEFVIACKLISN 458
D++ + + ++ +I+ L D ++DG + ++EF K+ +
Sbjct: 119 DEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDPS 178
Query: 459 KLRGFDI 465
+ ++
Sbjct: 179 IIGALNL 185
Score = 35.6 bits (82), Expect = 0.018
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 16/76 (21%)
Query: 281 KLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQG--------------ILAQIWNLAD 326
KL + F D G+++ + I+ + G + +I+ L D
Sbjct: 100 KLSW--AFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMD 157
Query: 327 MDSDGQLSCDEFVLAM 342
+ DG ++ DEF
Sbjct: 158 KNEDGYITLDEFREGS 173
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 40.2 bits (94), Expect = 5e-04
Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 39/177 (22%)
Query: 294 TRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEK 353
+S F + G ++N+ D D +G + EF+ A+ + + +K
Sbjct: 44 NKSEFQKIYKQFFPF---GDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELNDK 100
Query: 354 IPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWN---VSRHERTRFETHFQAMKPVNGIV 410
+ AF+ D N +S E A+ + G +
Sbjct: 101 LIW---------AFQ-------------LYDLDNNGLISYDE---MLRIVDAIYKMVGSM 135
Query: 411 TGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACK---LISNKLRGFD 464
+ + +I+++ D ++DG++ + EF K I + L +D
Sbjct: 136 VKLPEDEDTPE-----KRVNKIFNMMDKNKDGQLTLEEFCEGSKRDPTIVSALSLYD 187
Score = 36.7 bits (85), Expect = 0.008
Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 30/116 (25%)
Query: 241 VNNSNLVDLKKTLANMMSDSEKLYNVLGGPPLEWAVPHASKLKYTQLFNTTDRTRSGFLS 300
+ + +D K+ + + G + KL + F D +G +S
Sbjct: 74 ADKNGYIDFKEFICALS-------VTSRGELND-------KLIW--AFQLYDLDNNGLIS 117
Query: 301 GPQARNIMVATGLSQG--------------ILAQIWNLADMDSDGQLSCDEFVLAM 342
+ I+ A G + +I+N+ D + DGQL+ +EF
Sbjct: 118 YDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGS 173
Score = 32.5 bits (74), Expect = 0.18
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVAT-----GLSQGILAQIWNLADMDSDGQLSCDEFVL 340
+FN D ++G++ + + A G L + L D+D++G +S DE +L
Sbjct: 67 YVFNVFDADKNGYID---FKEFICALSVTSRGELNDKLIWAFQLYDLDNNGLISYDE-ML 122
Query: 341 AMHLCDLAKGGEKIPVPLPIDMI 363
+ G + +P D
Sbjct: 123 RIVDAIYKMVGSMVKLPEDEDTP 145
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 39.1 bits (92), Expect = 7e-04
Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F D+ +G +S R ++ G L+ + ++ ++DS+G++ +F+ +
Sbjct: 89 FQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDV 145
Score = 34.9 bits (81), Expect = 0.020
Identities = 24/180 (13%), Positives = 55/180 (30%), Gaps = 48/180 (26%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATGL--SQGILAQIWNL-ADMDSDGQLSCDEFVLAM 342
LF D+ G ++ + + A G + ++ I N + + L+ D+ +
Sbjct: 11 TLF---DKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLI 67
Query: 343 HLCDLAKGGEKIPVPLPI-DMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQ 401
E + AF+ D
Sbjct: 68 E----VNEKELDATTKAKTEDFVKAFQ-------------VFD----------------- 93
Query: 402 AMKPVNGIVTGDQVKGFLMQSG--LPVATLGQIWSLADTDQDGKMNINEFVIACKLISNK 459
K G V+ ++ L G L A + ++ + D +G+++ +F+ + + +
Sbjct: 94 --KESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFI---EDVLRQ 148
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 39.7 bits (93), Expect = 8e-04
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 292 DRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAK 349
D+ SG ++ + + +G SQ + D+D+ G L DE L
Sbjct: 123 DKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQH----LGF 178
Query: 350 GGEKIP 355
P
Sbjct: 179 WYTLDP 184
Score = 35.9 bits (83), Expect = 0.016
Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 21/157 (13%)
Query: 326 DMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRR----QRQNSVT----L 377
D++ +G+++ DE V AK + AF R + + L
Sbjct: 30 DINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFPQFL 89
Query: 378 AANVAMDPWNVSRHERTRFETHFQAMKPV--------NGIVTGDQVKGFLMQSGLPV--A 427
+ + + R + V +G +T D+ K + SG+
Sbjct: 90 DGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQE 149
Query: 428 TLGQIWSLADTDQDGKMNINEFVIACKLISNKLRGFD 464
+ D D G ++++E + D
Sbjct: 150 DCEATFRHCDLDNAGDLDVDEMT---RQHLGFWYTLD 183
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 39.5 bits (92), Expect = 0.001
Identities = 21/150 (14%), Positives = 42/150 (28%), Gaps = 26/150 (17%)
Query: 318 LAQIWNLADMDSDGQLSCDEFVLA-MHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVT 376
+++ D + G+L DE + + L + ++ D+ AF + R
Sbjct: 50 RIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRV-----RDITKRAFDKSRTLGSK 104
Query: 377 LAAN--------VAMDPWNVSRHERTRFETHFQAM-----KPVNGIVTGD---QVKGFLM 420
L + M N +V + + L
Sbjct: 105 LENKGSEDFVEFLEF----RLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLE 160
Query: 421 QSGLPVATLGQIWSLADTDQDGKMNINEFV 450
G V ++ D + G + +EF
Sbjct: 161 AWGAKVEDPAALFKELDKNGTGSVTFDEFA 190
Score = 37.6 bits (87), Expect = 0.005
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNL---ADMDSDGQLSCDEFVLAM 342
+F+ D + + + + + + + L D + G ++ DEF
Sbjct: 134 VMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWA 193
Query: 343 HLCDLAKGGE 352
L G+
Sbjct: 194 SAVKLDADGD 203
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 38.7 bits (91), Expect = 0.001
Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 8/68 (11%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLC 345
F D G + ++ G + + +W D G + +
Sbjct: 101 FKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICYVI--- 157
Query: 346 DLAKGGEK 353
GE
Sbjct: 158 ---THGED 162
Score = 32.6 bits (75), Expect = 0.14
Identities = 25/168 (14%), Positives = 46/168 (27%), Gaps = 49/168 (29%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG---LSQGILAQIWNLADMDSDGQLSCDEFVLAMHL 344
F D+ G + R A G + L + ++ G ++ F+
Sbjct: 31 FTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAM----IKEASGPINFTVFLTMF-- 84
Query: 345 CDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMK 404
GEK+ P D+I AF+ +DP
Sbjct: 85 ------GEKLKGADPEDVIMGAFK-------------VLDPDG----------------- 108
Query: 405 PVNGIVTGDQVKGFLMQSG--LPVATLGQIWSLADTDQDGKMNINEFV 450
G + ++ L G + +W+ D G ++
Sbjct: 109 --KGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNIC 154
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 38.7 bits (91), Expect = 0.001
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 38/135 (28%)
Query: 223 PWGAFINGWLSTKEKDLEVNNSNLVDLK-------------KTLANMMSDSEKLYNVLGG 269
N + + +E++++ L +LK +A + D E
Sbjct: 8 SS-GRENLY---FQGHVELSSTLLKNLKNFKKENELKKIALTIIAKHLCDVEI------- 56
Query: 270 PPLEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADM 327
+ L+ +F D SG LS + + + G + Q+ D
Sbjct: 57 ----------NNLR--NIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDS 104
Query: 328 DSDGQLSCDEFVLAM 342
++ GQ+ +F+ A
Sbjct: 105 NASGQIHYTDFLAAT 119
Score = 37.2 bits (87), Expect = 0.005
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNL----ADMDSDGQLSCDEFVLA 341
+ F D +G +S + + I + ++ + + D++ DG++ EF+L
Sbjct: 136 KFF---DIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLM 192
Query: 342 M 342
M
Sbjct: 193 M 193
Score = 29.9 bits (68), Expect = 1.3
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 436 ADTDQDGKMNINEFV 450
D + DG+++ +EF+
Sbjct: 176 VDLNGDGEIDFHEFM 190
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 36.8 bits (86), Expect = 0.001
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG----LSQGILAQIW----NLADMDSDGQLSCDEFV 339
F D G+++ + + MV LS+ + + +AD +SDG++S +EF+
Sbjct: 13 FKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFL 72
Query: 340 LAM 342
A
Sbjct: 73 NAN 75
Score = 31.1 bits (71), Expect = 0.13
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 436 ADTDQDGKMNINEFVIACKLISNKL 460
AD + DGK++ EF+ + L
Sbjct: 58 ADKNSDGKISKEEFL---NANAELL 79
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 37.3 bits (87), Expect = 0.002
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATG-----LSQGILAQIWNLADMDSDGQLSCDEFVL 340
+F D +SG+L G + + + L++ + + AD D DG++ DEF
Sbjct: 45 DIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQE 104
Query: 341 AMH 343
+H
Sbjct: 105 MVH 107
Score = 30.7 bits (70), Expect = 0.26
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 407 NGIVTGDQVKGFLMQSG-----LPVATLGQIWSLADTDQDGKMNINEFV 450
+G + GD++K FL + L + + AD D DGK+ +EF
Sbjct: 55 SGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQ 103
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 36.5 bits (85), Expect = 0.002
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F D+ +G++S + R++M G L+ + ++ AD+D DGQ++ +EFV M
Sbjct: 35 FRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 91
Score = 29.9 bits (68), Expect = 0.40
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 436 ADTDQDGKMNINEFVIACKLISNK 459
AD D DG++N EFV ++++ K
Sbjct: 74 ADIDGDGQVNYEEFV---QMMTAK 94
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 39.7 bits (92), Expect = 0.002
Identities = 32/145 (22%), Positives = 41/145 (28%), Gaps = 11/145 (7%)
Query: 79 STPGSSCSASHTSATNGPCHPSLTSPTHWYLQGKKYHTHVFTAGQFCMTIQAKGGYLIVS 138
TP S+ S + + SP AG F A G
Sbjct: 1470 VTPYSNESGLVNADLDVKDELMF-SPLVDSGSND------AMAGGFTAYGGADYGEATSP 1522
Query: 139 GGGSGPSPLSTSIVSPPNTVAPPSSTTPLIPGITSPPGTLQGGITSPVSIIPGATSPPNV 198
G G +P S +P S T TSP + SP S TSP
Sbjct: 1523 FGAYGEAPTSPGFGVSSPGFSPTSPTY----SPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1578
Query: 199 PAAITKLTPPGPLTPDKPPAPVESP 223
P + + +P P SP
Sbjct: 1579 PTSPSYSPTSPSYSPTSPSYSPTSP 1603
Score = 38.9 bits (90), Expect = 0.004
Identities = 36/158 (22%), Positives = 53/158 (33%), Gaps = 9/158 (5%)
Query: 68 TSSSAHNPGWDSTPGSSCSASHTSATNGPCHP--SLTSPTHWYLQGKKYHTHVFTAGQFC 125
T+ + G ++P + + TS G P S TSPT+ + T+ +
Sbjct: 1509 TAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSP----AYSPTSPSYS 1564
Query: 126 MTIQAKGGYLIVSGGGSGPSPLSTSIVSPPNTVAPPSSTTPLIPGITSPPGTLQGGITSP 185
T Y S S SP + + +P S T TSP + SP
Sbjct: 1565 PT---SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1621
Query: 186 VSIIPGATSPPNVPAAITKLTPPGPLTPDKPPAPVESP 223
S TSP P + + +P P SP
Sbjct: 1622 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1659
Score = 33.1 bits (75), Expect = 0.26
Identities = 19/96 (19%), Positives = 27/96 (28%), Gaps = 3/96 (3%)
Query: 136 IVSGGGSGPSPLSTSIVSPPNTVAPPSSTTPLIPGITSPPGTLQGGITSPVSIIPGATSP 195
+V G + + + S TSP + SP S TSP
Sbjct: 1495 LVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSP 1554
Query: 196 PNVPAAITKLTPPGPLTPDKPPAPVESPWGAFINGW 231
P +P P P +P SP +
Sbjct: 1555 AYSP-TSPSYSPTSPSYS--PTSPSYSPTSPSYSPT 1587
Score = 32.4 bits (73), Expect = 0.45
Identities = 42/176 (23%), Positives = 59/176 (33%), Gaps = 33/176 (18%)
Query: 50 PHQSSFNRALCATTPHHETSSSAHNPGWDSTPGSSCSASHTSATNGPCHP--SLTSPTHW 107
P S + + T+P + +S +++P S +S S S TS + P P S TSP
Sbjct: 1561 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--- 1617
Query: 108 YLQGKKYHTHVFTAGQFCMTIQAKGGYLIVSGGGSGPSPLSTSIVSPPNTVAPPSSTTPL 167
Y S S SP + + +P S T
Sbjct: 1618 -------------------------SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1652
Query: 168 IPGITSPPGTLQGGITSPVSIIPGATSPPNVPAAITKLTPPGPLTPDKPPAPVESP 223
TSP + SP S TSP P + +P P P +P SP
Sbjct: 1653 SYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSP--NYSPTSPSYSP 1705
Score = 32.0 bits (72), Expect = 0.58
Identities = 44/181 (24%), Positives = 63/181 (34%), Gaps = 30/181 (16%)
Query: 50 PHQSSFNRALCATTPHHETSSSAHNPGWDSTPGSSCSASHTSATNGPCHP--SLTSPTHW 107
P S + + T+P + +S +++P S +S S S TS + P P S TSP++
Sbjct: 1575 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY- 1633
Query: 108 YLQGKKYHTHVFTAGQFCMTIQAKGGYLIVSGGGSGPSPLSTSIVSPPNTVAPPSSTTPL 167
Y S S SP S S SP + PS +P
Sbjct: 1634 --------------------SPTSPSYSPTSPSYSPTSP-SYSPTSPAYSPTSPS-YSPT 1671
Query: 168 IPG--ITSPPGTLQGGITSPVSIIPGATSPPNVPAAIT-KLTPPG--PLTPDKPPAPVES 222
P TSP + SP S TSP P + P P ++ E+
Sbjct: 1672 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENEN 1731
Query: 223 P 223
Sbjct: 1732 S 1732
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 38.3 bits (90), Expect = 0.002
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLC 345
F D+ +G++S + R++M G L+ + ++ AD+D DGQ++ +EFV M
Sbjct: 90 FRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM--- 146
Query: 346 DLAKGGEKIPVPLPIDMIPPAFR 368
AKGG ++I R
Sbjct: 147 -TAKGGGGGAAARK-EVIRNKIR 167
Score = 38.3 bits (90), Expect = 0.002
Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 47/181 (25%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLC 345
F+ D+ G ++ + +M + G ++ L + N D D +G + EF+ M
Sbjct: 17 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA-- 74
Query: 346 DLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKP 405
K+ + I AFR F K
Sbjct: 75 ------RKMKDTDSEEEIREAFR------------------------------VFD--KD 96
Query: 406 VNGIVTGDQVKGFLMQSG--LPVATLGQIWSLADTDQDGKMNINEFVIACKLISNKLRGF 463
NG ++ +++ + G L + ++ AD D DG++N EFV ++++ K G
Sbjct: 97 GNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV---QMMTAKGGGG 153
Query: 464 D 464
Sbjct: 154 G 154
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 38.3 bits (89), Expect = 0.002
Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 39/188 (20%)
Query: 283 KYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
+ + + +GF + G ++N+ D + DG++ EF+ A+
Sbjct: 33 GFIKDCPSGQLDAAGFQKIYKQFFPF---GDPTKFATFVFNVFDENKDGRIEFSEFIQAL 89
Query: 343 HLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWN---VSRHERTRFETH 399
+ EK+ AF+ D N ++R+E
Sbjct: 90 SVTSRGTLDEKLRW---------AFK-------------LYDLDNDGYITRNEMLDIVDA 127
Query: 400 FQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACK---LI 456
M + ++ P + +I+++ D + DGK+ + EF K I
Sbjct: 128 IYQMVGNTVELPEEENT--------PEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSI 179
Query: 457 SNKLRGFD 464
L +D
Sbjct: 180 VQALSLYD 187
Score = 29.8 bits (67), Expect = 1.5
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 389 SRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQ---SGLPVATLGQIWSLADTDQDGKMN 445
+ E ++ F P +G + + Q G P ++++ D ++DG++
Sbjct: 23 TEKEVQQWYKGFIKDCP-SGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIE 81
Query: 446 INEFVIACKLISN 458
+EF+ A + S
Sbjct: 82 FSEFIQALSVTSR 94
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 36.9 bits (86), Expect = 0.002
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 22/99 (22%)
Query: 250 KKTLANMMSDSEKLYNVLGGPPLEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQARNIM- 308
K M+ +K A +K ++F+ D+ +SGF+ + +I+
Sbjct: 26 HKKFFQMVGLKKK---------------SADDVK--KVFHILDKDKSGFIEEDELGSILK 68
Query: 309 ----VATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343
A LS + D D DG++ +EF +
Sbjct: 69 GFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVA 107
Score = 30.7 bits (70), Expect = 0.29
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 407 NGIVTGDQVKGFL-----MQSGLPVATLGQIWSLADTDQDGKMNINEFV 450
+G + D++ L L + + D D DGK+ + EF
Sbjct: 55 SGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFS 103
Score = 28.4 bits (64), Expect = 2.1
Identities = 6/50 (12%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 305 RNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKI 354
++ S + +++++ D D G + DE + + +
Sbjct: 30 FQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILK--GFSSDARDL 77
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 36.1 bits (84), Expect = 0.003
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343
QLF D+ L+ + +M A G ++ +++I D D+ G+ + F+ M
Sbjct: 21 QLF---DKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIML 77
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 37.6 bits (88), Expect = 0.003
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F D+ GF+ + I+ ATG +++ + + +D ++DG++ DEF+ M
Sbjct: 102 FRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 158
Score = 33.3 bits (77), Expect = 0.077
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F+ D G +S + +M G ++ L I D D G + +EF++ M
Sbjct: 26 FDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMM 82
Score = 30.6 bits (70), Expect = 0.56
Identities = 5/15 (33%), Positives = 12/15 (80%)
Query: 436 ADTDQDGKMNINEFV 450
+D + DG+++ +EF+
Sbjct: 141 SDKNNDGRIDFDEFL 155
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 36.5 bits (85), Expect = 0.003
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIM-----VATGLSQGILAQIWNLADMDSDGQLSCDEFVL 340
++F D +SGF+ + + + A L+ AD D DG++ +EF
Sbjct: 45 EIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQE 104
Query: 341 AM 342
+
Sbjct: 105 MV 106
Score = 31.1 bits (71), Expect = 0.23
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 407 NGIVTGDQVKGFLMQSGLPVATLG-----QIWSLADTDQDGKMNINEFV 450
+G + D++K FL + L + AD D DGK+ EF
Sbjct: 55 SGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQ 103
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 36.7 bits (86), Expect = 0.003
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 282 LKYTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFV 339
+ LF D G +S + + + ++ +L I+ D D +G++ +EF
Sbjct: 2 AE--ALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFA 59
Query: 340 LAM 342
Sbjct: 60 KFY 62
Score = 36.0 bits (84), Expect = 0.007
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
+ D G L+ + + G+ + +A+ AD + DG ++ +EF+
Sbjct: 81 YKLMDVDGDGKLTKEEVTSFFKKHGIEK--VAEQVMKADANGDGYITLEEFLEFS 133
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 38.7 bits (88), Expect = 0.003
Identities = 14/98 (14%), Positives = 24/98 (24%), Gaps = 4/98 (4%)
Query: 128 IQAKGGYLIVSGGGSGPSPLSTSIVSPPNTVAPPSSTTPLIPGITSPPGTLQGGITSPVS 187
I+ G V+ G + + + P + + +
Sbjct: 389 IKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTK 448
Query: 188 IIPGATSPPNVPAAITKLT----PPGPLTPDKPPAPVE 221
P P P T T P P+ P+ P
Sbjct: 449 EKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTP 486
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 37.2 bits (87), Expect = 0.004
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 281 KLKYT-QLFNTTDRTRSGFLSGP---QARNIMVATGLSQGILAQIWNL----ADMDSDGQ 332
KL++ +++ D + G++S Q +MV L L QI + AD D DG+
Sbjct: 76 KLRFAFRIY---DMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGR 132
Query: 333 LSCDEFVLAMHLCDLAK 349
+S +EF + D+ K
Sbjct: 133 ISFEEFCAVVGGLDIHK 149
Score = 34.1 bits (79), Expect = 0.035
Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 49/172 (28%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATGLSQGI---LAQIWNLADMDSDGQLSCDEFV-LA 341
+ F D SG LS + + ++ ++ D D +G++ EF+
Sbjct: 10 KRFKKLDLDNSGSLSVE-----EFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGV 64
Query: 342 MHLCDLAKGGEKIPVPLPIDMIPPAFRR--QRQNSVTLAANVAMDPWNVSRHERTRFETH 399
+K+ AFR ++ +S E
Sbjct: 65 SQFSVKGDKEQKLRF---------AFRIYDMDKDGY------------ISNGEL------ 97
Query: 400 FQAMKPVNGI-VTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFV 450
FQ +K + G + Q++ + + AD D DG+++ EF
Sbjct: 98 FQVLKMMVGNNLKDTQLQ----------QIVDKTIINADKDGDGRISFEEFC 139
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 36.8 bits (86), Expect = 0.004
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F D +G+L+ Q +NI+ G L+ L S+ + F +
Sbjct: 90 FAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDA--LNAFSSEDNIDYKLFCEDI 144
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 36.7 bits (86), Expect = 0.004
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F DR +G +S + R++M G L+ + ++ AD+D DG ++ +EFV M
Sbjct: 89 FKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMM 145
Score = 36.3 bits (85), Expect = 0.006
Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 47/176 (26%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLC 345
F D+ G ++ + +M + G ++ L + N D D +G + EF+ M
Sbjct: 16 FALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARK 75
Query: 346 DLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKP 405
+ E + + AF+ F +
Sbjct: 76 MKEQDSE--------EELIEAFK------------------------------VFD--RD 95
Query: 406 VNGIVTGDQVKGFLMQSG--LPVATLGQIWSLADTDQDGKMNINEFVIACKLISNK 459
NG+++ +++ + G L + ++ AD D DG +N EFV +++ +K
Sbjct: 96 GNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFV---RMMVSK 148
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 35.3 bits (82), Expect = 0.005
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATG-LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
++F D G +S + + + G ++ + ++ D D DG +S DEF
Sbjct: 15 RIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFA 72
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 36.7 bits (86), Expect = 0.005
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLC 345
F D+ + G+++ N M G ++ L ++ +M+ G + D+FV M
Sbjct: 17 FREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELM--- 73
Query: 346 DLAKGGEKIPVPLPIDMIPPAFR 368
K + + + + AFR
Sbjct: 74 -GPKLLAETADMIGVKELRDAFR 95
Score = 34.8 bits (81), Expect = 0.023
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG---LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F D G +S + R M A + + +I D++ DG++ +EFV M
Sbjct: 94 FREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMM 151
Score = 31.0 bits (71), Expect = 0.42
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 436 ADTDQDGKMNINEFV 450
D + DG+++ EFV
Sbjct: 134 VDLNGDGRVDFEEFV 148
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 34.8 bits (81), Expect = 0.005
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F D+ G ++ + R M G L Q L + AD+D DG+++ +EF +
Sbjct: 12 FRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARML 68
Score = 30.9 bits (71), Expect = 0.11
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 436 ADTDQDGKMNINEFV 450
AD DQDG++N EF
Sbjct: 51 ADVDQDGRVNYEEFA 65
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 38.2 bits (88), Expect = 0.005
Identities = 33/152 (21%), Positives = 48/152 (31%), Gaps = 15/152 (9%)
Query: 82 GSSCSASHTSATNGPCHPSLTSPTHWYLQGKKYHTHVFTAGQFCMTIQAKGGYLIVSGGG 141
GSS H S+ P + P+ + A F +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMVIPSA---------SVTSAASDFLAALHPPVTV----PDP 48
Query: 142 SGPSPLSTSIVSPPNTVAPPSSTTPLIPGITSPPGTLQGGITSPVSIIPGATSPPNVPAA 201
+ P P + + +PP+TV S ++ G T P GT PG +P + P A
Sbjct: 49 APPPPPAPAAGNPPDTVTGDSVLQRILRGPTGP-GTTSLAPAVRYGRQPGPEAPASAPPA 107
Query: 202 ITKLTPPGPLTPDKPPAPVESPW-GAFINGWL 232
+ P P P PV I W
Sbjct: 108 AGRAVPGLYHHPVPEPDPVRVEEVSRRIKRWA 139
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 36.4 bits (85), Expect = 0.006
Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F D+ +G + + R +++ G L+ + ++ + DG ++ + FV +
Sbjct: 82 FRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDML 138
Score = 30.2 bits (69), Expect = 0.77
Identities = 24/167 (14%), Positives = 47/167 (28%), Gaps = 46/167 (27%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATGL--SQGILAQIWNLADMDSDGQLSCDEFVLAMHLC 345
F D+ G +S + + + + G + L I +++ F
Sbjct: 11 FQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTI--KGQLNAKE-FDLATFKTVYRKP 67
Query: 346 DLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKP 405
+ + AFR A+D K
Sbjct: 68 IKTPTEQS-------KEMLDAFR-------------ALD-------------------KE 88
Query: 406 VNGIVTGDQVKGFLMQSG--LPVATLGQIWSLADTDQDGKMNINEFV 450
NG + +++ L+ G L + + ++ DG +N FV
Sbjct: 89 GNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFV 135
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 37.1 bits (86), Expect = 0.006
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 13/77 (16%)
Query: 277 PHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVA-TGLSQG----------ILAQIWNLA 325
K Y F D G L+ ++ TG + ++ I +
Sbjct: 126 TPDIKSHY--AFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEES 183
Query: 326 DMDSDGQLSCDEFVLAM 342
D+D DG ++ EF +
Sbjct: 184 DIDRDGTINLSEFQHVI 200
Score = 36.4 bits (84), Expect = 0.010
Identities = 28/183 (15%), Positives = 56/183 (30%), Gaps = 42/183 (22%)
Query: 290 TTDRTRSGFLSGPQARNIMVATGLSQGILAQ-IWNLADMD-SDGQLSCDEFVLAM-HLCD 346
+ + + + Q ++ L + I + + LS ++F+ + D
Sbjct: 67 SVESSLRAQVPFEQILSL---PELKANPFKERICRVFSTSPAKDSLSFEDFLDLLSVFSD 123
Query: 347 LAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWN---VSRHERTRFETHFQAM 403
A K AFR D + ++R + +
Sbjct: 124 TATPDIKSH---------YAFR-------------IFDFDDDGTLNRED----------L 151
Query: 404 KPVNGIVTGDQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVIACKLISNKLRGF 463
+ +TG+ L S + I +D D+DG +N++EF + F
Sbjct: 152 SRLVNCLTGEGEDTRLSASE-MKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFASSF 210
Query: 464 DIP 466
I
Sbjct: 211 KIV 213
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 36.4 bits (85), Expect = 0.007
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
++F D+ G++ + + ++ ATG +++ + ++ D ++DG++ DEF+ M
Sbjct: 102 RMF---DKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157
Score = 32.9 bits (76), Expect = 0.11
Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 41/160 (25%)
Query: 295 RSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGE 352
G +S + +M G + L ++ + D D G + DEF++ M + +
Sbjct: 32 EDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMM----VRSMKD 87
Query: 353 KIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTG 412
+ + FR F K +G +
Sbjct: 88 D-SKGKSEEELSDLFR------------------------------MFD--KNADGYIDL 114
Query: 413 DQVKGFLMQSG--LPVATLGQIWSLADTDQDGKMNINEFV 450
+++K L +G + + ++ D + DG+++ +EF+
Sbjct: 115 EELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFL 154
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 34.8 bits (81), Expect = 0.007
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATG---LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
++F D G + + + IM G L+ + + AD D +G + EF+ +
Sbjct: 15 KVF---DANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMDLI 71
Score = 30.2 bits (69), Expect = 0.27
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 436 ADTDQDGKMNINEFV 450
AD D +G ++I EF+
Sbjct: 54 ADEDGNGVIDIPEFM 68
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 36.5 bits (84), Expect = 0.007
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 278 HASKLKYTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGI-----LAQIWNLADMDSDGQ 332
+ Y +F G L + T +GI L + L DS G+
Sbjct: 72 WKRLVHYQHVFQKVQT-SPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYSDSVGR 130
Query: 333 LSCDEFVLAM 342
+S V +
Sbjct: 131 VSFPSLVCFL 140
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 36.0 bits (83), Expect = 0.007
Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 13/91 (14%)
Query: 284 YTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGI--LAQIWNLADMDSDGQLSCDEFVLA 341
+ + D +G + + ++ G+ + L ++ S+ S +F+
Sbjct: 50 FKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRM 109
Query: 342 MH-----------LCDLAKGGEKIPVPLPID 361
M + + K P P
Sbjct: 110 MLGKRSAILRMILMYEEKNKEHKRPTGPPAK 140
Score = 28.7 bits (64), Expect = 2.2
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 407 NGIVTGDQVKGFLMQSGLPV--ATLGQIWSLADTDQDGKMNINEF 449
NG + +K L + G+P L ++ + + + ++F
Sbjct: 62 NGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSDF 106
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 36.7 bits (85), Expect = 0.008
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 13/77 (16%)
Query: 277 PHASKLKYTQLFNTTDRTRSGFLSGPQARNIMVA-------TGLS----QGILAQIWNLA 325
K Y F D G L+ ++ T LS + ++ I +
Sbjct: 95 TPDIKSHY--AFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEES 152
Query: 326 DMDSDGQLSCDEFVLAM 342
D+D DG ++ EF +
Sbjct: 153 DIDRDGTINLSEFQHVI 169
Score = 34.7 bits (80), Expect = 0.029
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 431 QIWSLADTDQDGKMNINEFVIACKLISNKLRGFDIP 466
I +D D+DG +N++EF + F I
Sbjct: 147 NILEESDIDRDGTINLSEFQHVISRSPDFASSFKIV 182
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 34.5 bits (80), Expect = 0.011
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
++F D+ ++G++S + R++M+ G L+ + Q+ AD+D DGQ++ +EFV M
Sbjct: 16 KVF---DKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMM 71
Score = 30.3 bits (69), Expect = 0.28
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 436 ADTDQDGKMNINEFV 450
AD D DG++N EFV
Sbjct: 54 ADLDGDGQVNYEEFV 68
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 36.1 bits (84), Expect = 0.011
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 24/99 (24%)
Query: 249 LKKT----LANMMSDSEKLYNVLGGPPLEWAVPHASKLKYTQLFNTTDRTRSGFLSGPQA 304
+K +A +D + KLK F D G+++ Q
Sbjct: 34 FQKLAMTIIAQQSNDYDV-----------------EKLK--STFLVLDEDGKGYITKEQL 74
Query: 305 RNIMVATGL-SQGILAQIWNLADMDSDGQLSCDEFVLAM 342
+ + GL + + D D G++ EF+ A
Sbjct: 75 KKGLEKDGLKLPYNFDLLLDQIDSDGSGKIDYTEFIAAA 113
Score = 34.1 bits (79), Expect = 0.056
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 407 NGIVTGDQVKGFLMQSGLPVAT-LGQIWSLADTDQDGKMNINEFVIACK 454
G +T +Q+K L + GL + + D+D GK++ EF+ A
Sbjct: 66 KGYITKEQLKKGLEKDGLKLPYNFDLLLDQIDSDGSGKIDYTEFIAAAL 114
Score = 33.8 bits (78), Expect = 0.066
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATGLSQGI-------LAQIWNLADMDSDGQLSCDEF 338
F D G ++ + +I+ I + ++ D ++DG++ EF
Sbjct: 126 CAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEF 185
Query: 339 VLAMHL 344
M L
Sbjct: 186 SEMMKL 191
Score = 29.5 bits (67), Expect = 1.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 436 ADTDQDGKMNINEFV 450
D + DGK++ +EF
Sbjct: 172 VDKNNDGKIDFHEFS 186
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 35.6 bits (82), Expect = 0.013
Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 284 YTQLFNTTDRTRSGFLSGPQARNIMVATGLSQGI--LAQIWNLADMDSDGQLSCDEFVLA 341
+ + + D G + + +M G+ + + ++ + +S +FV
Sbjct: 52 FKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNM 111
Query: 342 M 342
M
Sbjct: 112 M 112
Score = 28.3 bits (63), Expect = 3.5
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 407 NGIVTGDQVKGFLMQSGLPV--ATLGQIWSLADTDQDGKMNINEFV 450
G + +K + + G+P + ++ S ++ +FV
Sbjct: 64 EGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFV 109
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 35.6 bits (83), Expect = 0.014
Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMHLC 345
F D + L+ ++++ G ++ + + A ++ G+ +F +
Sbjct: 93 FAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVE-GGKFDYVKFTAMI--- 148
Query: 346 DLAKGGEK 353
KG +
Sbjct: 149 ---KGSGE 153
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 34.5 bits (80), Expect = 0.015
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIM-----VATGLSQGILAQIWNLADMDSDGQLSCDEFVL 340
++F D+ +SGF+ + + + A L+ D D DG++ +EF
Sbjct: 46 KVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQS 105
Query: 341 AM 342
+
Sbjct: 106 LV 107
Score = 31.8 bits (73), Expect = 0.12
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 407 NGIVTGDQVKGFLMQSG-----LPVATLGQIWSLADTDQDGKMNINEFV 450
+G + ++++ FL L A + DTD DGK+ + EF
Sbjct: 56 SGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQ 104
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 35.2 bits (82), Expect = 0.016
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
+LF D SG ++ R + G L++ L ++ AD + D ++ DEF+ M
Sbjct: 108 RLF---DDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIM 163
Score = 30.6 bits (70), Expect = 0.64
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 436 ADTDQDGKMNINEFV 450
AD + D +++ +EF+
Sbjct: 146 ADRNDDNEIDEDEFI 160
Score = 29.9 bits (68), Expect = 1.0
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F+ D SG + + + M A G + + ++ + D D G + +EF+ M
Sbjct: 34 FDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMM 90
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 34.1 bits (79), Expect = 0.018
Identities = 22/132 (16%), Positives = 39/132 (29%), Gaps = 48/132 (36%)
Query: 324 LADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAM 383
L + ++G + +F + L K + + F+ A+
Sbjct: 16 LDAVKAEGSFNHKKFFALVGL----KAMSA-------NDVKKVFK-------------AI 51
Query: 384 DPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSG-----LPVATLGQIWSLADT 438
D +G + +++K L L A AD
Sbjct: 52 D-------------------ADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADK 92
Query: 439 DQDGKMNINEFV 450
D DGK+ I+EF
Sbjct: 93 DGDGKIGIDEFE 104
Score = 33.7 bits (78), Expect = 0.029
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 292 DRTRSGFLSGPQARNIM-----VATGLSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
D SGF+ + + ++ L+ AD D DG++ DEF +
Sbjct: 52 DADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLV 107
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 34.8 bits (81), Expect = 0.018
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F D +G +S + + G L+ L ++ + AD D DG++S EF+ M
Sbjct: 85 FKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 141
Score = 31.3 bits (72), Expect = 0.28
Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F+ D +G + + + M A G + + ++ + D + G+++ +F+ M
Sbjct: 12 FDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVM 68
Score = 30.9 bits (71), Expect = 0.42
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 436 ADTDQDGKMNINEFV 450
AD D DG+++ EF+
Sbjct: 124 ADRDGDGEVSEQEFL 138
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 33.7 bits (78), Expect = 0.020
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F+ D G +S + +M G ++ L I D D G + +EF++ M
Sbjct: 26 FDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMM 82
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 33.2 bits (77), Expect = 0.022
Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F+ D ++G + + + M A G + + + ++ N D + +G + D+F+ M
Sbjct: 13 FDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIM 69
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 34.5 bits (80), Expect = 0.024
Identities = 10/57 (17%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F D+ +G + G + R+++ G +++ + + DS+G ++ + F+ +
Sbjct: 93 FRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLA-GHEDSNGCINYEAFLKHI 148
Score = 32.6 bits (75), Expect = 0.13
Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 48/171 (28%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATGL--SQGILAQIWNLADMDS--DGQLSCDEFVLA 341
+LF DR G + Q ++M A G + + ++ D ++ + F+
Sbjct: 17 ELF---DRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPM 73
Query: 342 MHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTLAANVAMDPWNVSRHERTRFETHFQ 401
+ +G + FR D
Sbjct: 74 LQAVAKNRGQG------TYEDYLEGFR-------------VFD----------------- 97
Query: 402 AMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSL--ADTDQDGKMNINEFV 450
K NG V G +++ L G + T ++ ++ D +G +N F+
Sbjct: 98 --KEGNGKVMGAELRHVLTTLGEKM-TEEEVETVLAGHEDSNGCINYEAFL 145
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 34.2 bits (79), Expect = 0.027
Identities = 15/136 (11%), Positives = 33/136 (24%), Gaps = 43/136 (31%)
Query: 318 LAQIWNLADMDSDGQLSCDEFVLAMHLCDLAKGGEKIPVPLPIDMIPPAFRRQRQNSVTL 377
+ + + ++ + M EK+ V + + F
Sbjct: 5 EKSMLLETTSTTKMETKYEDMLPVM--------AEKMDVEEFVSELCKGFS--------- 47
Query: 378 AANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGFLMQSGLPVATLGQIWSL-- 435
P ++T + ++ G+ + +
Sbjct: 48 ---------------------LL--ADPERHLITAESLRRNSGILGIEGMSKEDAQGMVR 84
Query: 436 -ADTDQDGKMNINEFV 450
D D DG +N EF
Sbjct: 85 EGDLDGDGALNQTEFC 100
Score = 33.5 bits (77), Expect = 0.046
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG---LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F+ ++ R G +S+ + D+D DG L+ EF + M
Sbjct: 46 FSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLM 103
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 33.0 bits (76), Expect = 0.029
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATGL----SQGILAQIWNLADMDSDGQLSCDEFVLA 341
++F + +S + + +M G L ++ D + DG++S +EF++
Sbjct: 12 EVFAAKEG-DPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVM 70
Query: 342 M 342
M
Sbjct: 71 M 71
Score = 29.1 bits (66), Expect = 0.53
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 436 ADTDQDGKMNINEFV 450
D + DG+++ EF+
Sbjct: 54 VDKNGDGEVSFEEFL 68
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 34.4 bits (80), Expect = 0.031
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F+ D GF+ ++++ G S+ + +W A + + Q + ++ V
Sbjct: 91 FSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYNKMVDIK 146
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 35.6 bits (82), Expect = 0.032
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F D+ +G++S + R++M G L+ + ++ AD+D DGQ++ +EFV M
Sbjct: 391 FRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 447
Score = 35.6 bits (82), Expect = 0.034
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 284 YTQLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLA 341
+ + F+ D+ G ++ + +M + G ++ L + N D D +G + EF+
Sbjct: 314 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTM 373
Query: 342 M 342
M
Sbjct: 374 M 374
Score = 29.1 bits (65), Expect = 3.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 436 ADTDQDGKMNINEFV 450
AD D DG++N EFV
Sbjct: 430 ADIDGDGQVNYEEFV 444
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 33.4 bits (77), Expect = 0.033
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 288 FNTTDRTRSGFLSGPQARNIM-----VATGLSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F D+ +SGF+ + + + A L+ D D DG + DE+ +
Sbjct: 48 FFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAALV 107
Query: 343 H 343
Sbjct: 108 K 108
Score = 32.2 bits (74), Expect = 0.098
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 436 ADTDQDGKMNINEFV 450
D+D DG + ++E+
Sbjct: 90 GDSDGDGAIGVDEWA 104
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 34.0 bits (79), Expect = 0.039
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F T D +G++ ++ ++ G L A+ + + + GQ+ D F+ M
Sbjct: 85 FRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGITETE-KGQIRYDNFINTM 140
Score = 33.2 bits (77), Expect = 0.056
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343
F D R+GF++ + ++ G + +++N AD +G++ EF+ M
Sbjct: 12 FELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMG 69
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 34.6 bits (80), Expect = 0.040
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 296 SGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
G + + G SQ + Q + A +D +G + +F +
Sbjct: 139 DGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQIL 187
Score = 30.4 bits (69), Expect = 1.0
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 407 NGIVTGDQVKGFLMQSG--LPVATLGQIWSLADTDQDGKMNINEFVIACKLISNKLR 461
+G + +K L G + Q S A D +G ++I +F ++++ +
Sbjct: 139 DGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFA---QILTKGAK 192
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 34.1 bits (79), Expect = 0.040
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
QLF D +G +S R + G L+ L + D+D DG+++ +EF+
Sbjct: 103 QLF---DDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINENEFIAIC 158
Score = 32.1 bits (74), Expect = 0.16
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F+ D GFL + + M A G L + + + + D + + D+F + M
Sbjct: 29 FSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVM 85
Score = 30.2 bits (69), Expect = 0.90
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 436 ADTDQDGKMNINEFV 450
D D DG++N NEF+
Sbjct: 141 FDLDGDGEINENEFI 155
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 33.3 bits (77), Expect = 0.041
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 292 DRTRSGFLSGPQARNIM-----VATGLSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
D+ +SGF+ + + ++ L+ + D D DG++ DEF +
Sbjct: 51 DKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMV 106
Score = 31.8 bits (73), Expect = 0.12
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 436 ADTDQDGKMNINEFV 450
D+D DGK+ +EF
Sbjct: 89 GDSDHDGKIGADEFA 103
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 33.3 bits (77), Expect = 0.041
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 288 FNTTDRTRSGFLSGPQARNIM-----VATGLSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F D+ +SGF+ + + + A L+ D D DG + DEF +
Sbjct: 47 FYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMI 106
Query: 343 H 343
Sbjct: 107 K 107
Score = 32.2 bits (74), Expect = 0.10
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 436 ADTDQDGKMNINEFV 450
D D DG + ++EF
Sbjct: 89 GDKDGDGMIGVDEFA 103
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 35.3 bits (81), Expect = 0.042
Identities = 14/86 (16%), Positives = 22/86 (25%), Gaps = 2/86 (2%)
Query: 142 SGPSPLSTSIVSPPNTVAPPSSTTPLIPGITSPPGTLQGGITSPVSIIPGATSPPNVPAA 201
+ P+ T V+ A TP P + + P + P P A
Sbjct: 3 AAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT 62
Query: 202 ITKLTPPGPLTPDKPPAPVESPWGAF 227
+ L E+ F
Sbjct: 63 VA--AGHATLREHLRDIKAENTDANF 86
Score = 31.1 bits (70), Expect = 1.1
Identities = 16/87 (18%), Positives = 20/87 (22%)
Query: 140 GGSGPSPLSTSIVSPPNTVAPPSSTTPLIPGITSPPGTLQGGITSPVSIIPGATSPPNVP 199
G G + + + P T APP+ T P AT
Sbjct: 9 GTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHA 68
Query: 200 AAITKLTPPGPLTPDKPPAPVESPWGA 226
L D P GA
Sbjct: 69 TLREHLRDIKAENTDANFYVCPPPTGA 95
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 32.7 bits (75), Expect = 0.059
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
+ D +G + + ++ G + L ++ S S +F+ M
Sbjct: 38 YMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLRMM 94
Score = 30.0 bits (68), Expect = 0.50
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 407 NGIVTGDQVKGFLMQSGLPV--ATLGQIWSLADTDQDGKMNINEFV 450
NG + +K L + G+P L ++ + + +F+
Sbjct: 46 NGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFL 91
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 35.1 bits (80), Expect = 0.068
Identities = 34/169 (20%), Positives = 51/169 (30%), Gaps = 27/169 (15%)
Query: 61 ATTPHHETSSSAHNPGWDSTPGSSC-SASHTSATNGPCHPSLTSPTHWYLQGKKYHTHVF 119
A TP+ S + G+ +P ++ S + G
Sbjct: 1482 AGTPYE--RSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLG-----------AA 1528
Query: 120 TAGQFCMTIQAKGGYLIVSGGGSGPSPLSTSIVSPPNTVAPPSSTTPLIPGI--TSPPGT 177
+ + + + G G + S S SP + +P P P TSP +
Sbjct: 1529 SPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYM--PSSPSYSPTSPSYS 1586
Query: 178 LQGGITSPVSIIPGATSPPNVPAAITKLTPPG--PLTPD-KPPAPVESP 223
SP S TSP T P P +P P +P SP
Sbjct: 1587 PTSPSYSPTSPSYSPTSPSYSA------TSPSYSPTSPSYSPTSPSYSP 1629
Score = 33.1 bits (75), Expect = 0.25
Identities = 41/170 (24%), Positives = 59/170 (34%), Gaps = 41/170 (24%)
Query: 61 ATTPHHETSSSAHNPGWDSTPGSSCSASH--TSATNGPCHPSL--TSPTHWYLQGKKYHT 116
A +P + +S +++P S+PG S S ++ +S + P PS TSP++
Sbjct: 1546 AMSPGYGLTSPSYSP---SSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSY---------- 1592
Query: 117 HVFTAGQFCMTIQAKGGYLIVSGGGSGPSPLS--TSIVSPPNTVAPPS-STTPLIPGITS 173
S SP S S SP + PS S T TS
Sbjct: 1593 ---------------------SPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTS 1631
Query: 174 PPGTLQGGITSPVSIIPGATSPPNVPAAITKLTPPGPLTPDKPPAPVESP 223
P + SP S TSP P + + +P P SP
Sbjct: 1632 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1681
Score = 32.0 bits (72), Expect = 0.64
Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 19/156 (12%)
Query: 50 PHQSSFNRALCATTPHHETSSSAHNPGWDSTPGSSCSASHTSATNGPCHPSLTSPTHWYL 109
P S + + T+P + +S +++P S +S S S TS + P PS + + Y
Sbjct: 1611 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1670
Query: 110 QGKKYHTHVFTAGQFCMTIQAKGGYLIVSGGGSGPSPLSTSIVSPPNTVAPP--SSTTPL 167
T+ + T + Y S S SP S S SP + P S T+P
Sbjct: 1671 P---------TSPSYSPTSPS---YSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPS 1717
Query: 168 IPGITSPPGTLQGGITSPVSIIPGATSP---PNVPA 200
TSP + SP S TSP P P+
Sbjct: 1718 YSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1752
Score = 31.6 bits (71), Expect = 0.73
Identities = 41/167 (24%), Positives = 61/167 (36%), Gaps = 24/167 (14%)
Query: 58 ALCATTPHHETSSSAHNPGWDSTPGSSCSASHTSATNGPCHPSLTSPTHWYLQGKKYHTH 117
+ T+P + +S +++P S +S S S TS + P PS SPT
Sbjct: 1584 SYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPS-YSPT------------ 1630
Query: 118 VFTAGQFCMTIQAKGGYLIVSGGGSGPSPLSTSIVSPPNTVAPPSSTTPLIPGITSPPGT 177
+ + T + Y S S SP + + +P S T TSP +
Sbjct: 1631 ---SPSYSPTSPS---YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1684
Query: 178 LQGGITSPVSIIPGATSPPNVPAAITKLTPPGPLTPD-KPPAPVESP 223
SP S TSP P + + P +P P +P SP
Sbjct: 1685 PTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSP 1727
Score = 28.9 bits (64), Expect = 5.0
Identities = 41/169 (24%), Positives = 59/169 (34%), Gaps = 16/169 (9%)
Query: 50 PHQSSFNRALCATTPHHETSSSAHNPGWDSTPGSSCSASHTSATNGPCHPSLTSPTHWYL 109
P S + + AT+P + +S +++P S +S S S TS + P PS SPT
Sbjct: 1597 PSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPT---- 1651
Query: 110 QGKKYHTHVFTAGQFCMTIQAKGGYLIVSGGGSGPSPLSTSIVSPPNTVAPPSSTTPLIP 169
Y + Y S S SP + + +P S T
Sbjct: 1652 -SPSYSPTSPSYSP------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1704
Query: 170 GITSPPGTLQGGITSPVSIIPGATSPPNVPAAITKLTPPGPLTPDKPPA 218
TSP + SP S TSP P + + P +P P
Sbjct: 1705 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS----YSPTSPSYSPT 1749
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 33.3 bits (77), Expect = 0.075
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADM--DSDGQLSCDEFVLAM 342
F T DR GF+SG + R+++ A G LS + +I L D+ D +G + ++FV +
Sbjct: 90 FKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKV 148
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 32.5 bits (75), Expect = 0.11
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F D+ +G + + R ++ + G LS + ++ + DG ++ +FV +
Sbjct: 82 FQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQMI 137
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 31.0 bits (71), Expect = 0.12
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG-LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F D G +S + + + G S + ++ D D DG + +EF+
Sbjct: 9 FKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFISFC 64
Score = 28.3 bits (64), Expect = 1.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 436 ADTDQDGKMNINEFV 450
DTD DG ++ NEF+
Sbjct: 47 IDTDGDGFIDFNEFI 61
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 32.1 bits (74), Expect = 0.16
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAMH 343
F D+ SG +S + +M + G S+ +A + N D+D + + EF+ M
Sbjct: 17 FALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMS 74
Score = 31.3 bits (72), Expect = 0.36
Identities = 9/57 (15%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
F D+ G +S + ++++ + G L+ + ++ D G+++ +F +
Sbjct: 90 FKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIKQFAALL 145
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 32.2 bits (74), Expect = 0.17
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LSQGILAQIWNLADM--DSDGQLSCDEFVLAM 342
F T DR G +S + RN++ G +++ I+ D+ D DG + ++ + +
Sbjct: 91 FKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKKV 149
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 30.0 bits (68), Expect = 0.30
Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 314 SQGILAQIWNLADMDSDGQLSCDEFVLAMHLCDLAK 349
L ++ D + DG++S +EF + + +++
Sbjct: 45 GPRTLDDLFQELDKNGDGEVSFEEFQVLV--KKISQ 78
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 31.3 bits (72), Expect = 0.32
Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 11/61 (18%)
Query: 288 FNTTDRTRSGFLSGPQARNIMVATG--LS----QGILAQIWNLADMDSDGQLSCDEFVLA 341
D+ +G + G + R+++ G ++ + ++ DS+G ++ + FV
Sbjct: 91 LRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMK-----GQEDSNGCINYEAFVKH 145
Query: 342 M 342
+
Sbjct: 146 I 146
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 30.2 bits (68), Expect = 0.42
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 315 QGILAQIWNLADMDSDGQLSCDEFVLAM 342
G+L ++ D+DSDGQL EF+ +
Sbjct: 55 PGVLDRMMKKLDLDSDGQLDFQEFLNLI 82
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 29.8 bits (67), Expect = 0.50
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 315 QGILAQIWNLADMDSDGQLSCDEFVLAM 342
+ +I D + DG++ EFV+ +
Sbjct: 51 ADAVDKIMKELDENGDGEVDFQEFVVLV 78
Score = 29.4 bits (66), Expect = 0.64
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 419 LMQSGLP--------VATLGQIWSLADTDQDGKMNINEFVI 451
L+Q+ L + +I D + DG+++ EFV+
Sbjct: 36 LLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFVV 76
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 29.8 bits (67), Expect = 0.52
Identities = 3/28 (10%), Positives = 13/28 (46%)
Query: 315 QGILAQIWNLADMDSDGQLSCDEFVLAM 342
+ ++ + D + D ++ E+ + +
Sbjct: 52 EAAFQKLMSNLDSNRDNEVDFQEYCVFL 79
Score = 28.6 bits (64), Expect = 1.1
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 419 LMQSGLPVATLGQIWSLADTDQDGKMNINEFVI 451
+ A ++ S D+++D +++ E+ +
Sbjct: 45 FLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCV 77
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 30.3 bits (68), Expect = 0.54
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 306 NIMVATGLSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
N + ++ ++ I D ++D QLS +EF++ M
Sbjct: 46 NFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLM 82
Score = 28.7 bits (64), Expect = 1.8
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 413 DQVKGFLMQSGLPVATLGQIWSLADTDQDGKMNINEFVI 451
++ FL + + I DT+ D +++ EF++
Sbjct: 42 KDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIM 80
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 29.4 bits (66), Expect = 0.61
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 315 QGILAQIWNLADMDSDGQLSCDEFVLAM 342
+ + ++ D + D Q+ EF++ +
Sbjct: 51 KDAVDKLLKDLDANGDAQVDFSEFIVFV 78
Score = 28.6 bits (64), Expect = 1.2
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 419 LMQSGLPVATLGQIWSLADTDQDGKMNINEFVI 451
+QSG + ++ D + D +++ +EF++
Sbjct: 44 FLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIV 76
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 29.8 bits (67), Expect = 0.62
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 315 QGILAQIWNLADMDSDGQLSCDEFVLAM 342
+ ++ D + DG++S DE+ +
Sbjct: 54 RKAADKLIQNLDANHDGRISFDEYWTLI 81
Score = 29.0 bits (65), Expect = 1.0
Identities = 4/33 (12%), Positives = 14/33 (42%)
Query: 419 LMQSGLPVATLGQIWSLADTDQDGKMNINEFVI 451
++ ++ D + DG+++ +E+
Sbjct: 47 MLSDTGNRKAADKLIQNLDANHDGRISFDEYWT 79
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 29.4 bits (66), Expect = 0.64
Identities = 5/30 (16%), Positives = 16/30 (53%)
Query: 313 LSQGILAQIWNLADMDSDGQLSCDEFVLAM 342
+ + + D+++DG ++ EF++ +
Sbjct: 46 IRKKGADVWFKELDINTDGAVNFQEFLILV 75
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 29.0 bits (65), Expect = 0.78
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 315 QGILAQIWNLADMDSDGQLSCDEFVLAM 342
Q ++ ++ D + DG+ EF+ +
Sbjct: 51 QEVVDKVMETLDSNGDGECDFQEFMAFV 78
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 29.3 bits (66), Expect = 0.80
Identities = 4/28 (14%), Positives = 13/28 (46%)
Query: 315 QGILAQIWNLADMDSDGQLSCDEFVLAM 342
+ + + D +SD ++ E+ + +
Sbjct: 49 ESSIDDLMKSLDKNSDQEIDFKEYSVFL 76
Score = 28.6 bits (64), Expect = 1.2
Identities = 5/38 (13%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 419 LMQSGLPV-----ATLGQIWSLADTDQDGKMNINEFVI 451
L++ L + +++ + D + D +++ E+ +
Sbjct: 37 LIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYSV 74
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 30.8 bits (69), Expect = 0.81
Identities = 17/88 (19%), Positives = 22/88 (25%), Gaps = 4/88 (4%)
Query: 140 GGSGPSPLSTSIVSPPNTVAPPSSTTPLIPGITSPPGTLQGGITSPVSIIP----GATSP 195
GG ++ A ++ + PPG P G
Sbjct: 135 GGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPG 194
Query: 196 PNVPAAITKLTPPGPLTPDKPPAPVESP 223
P PPG TP P P P
Sbjct: 195 MRPPMGPPMGIPPGRGTPMGMPPPGMRP 222
Score = 29.2 bits (65), Expect = 2.6
Identities = 14/88 (15%), Positives = 20/88 (22%), Gaps = 1/88 (1%)
Query: 139 GGGSGPSPLSTSIVSPPNTVAPPSSTTPLIPGITSPPGTLQGGITSPVSIIPGATSPPNV 198
G + P V PS + P T+ ++ P P
Sbjct: 115 PAGVPMPQAPAGLAGPVRGVGGPSQQ-VMTPQGRGTVAAAAAAATASIAGAPTQYPPGRG 173
Query: 199 PAAITKLTPPGPLTPDKPPAPVESPWGA 226
P PP + P G
Sbjct: 174 GPPPPMGRGAPPPGMMGPPPGMRPPMGP 201
Score = 28.5 bits (63), Expect = 4.1
Identities = 8/72 (11%), Positives = 12/72 (16%)
Query: 154 PPNTVAPPSSTTPLIPGITSPPGTLQGGITSPVSIIPGATSPPNVPAAITKLTPPGPLTP 213
+ P T + P + PP + P
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197
Query: 214 DKPPAPVESPWG 225
P P
Sbjct: 198 PMGPPMGIPPGR 209
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 29.9 bits (67), Expect = 1.0
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 14/71 (19%)
Query: 286 QLFNTTDRTRSGFLSGPQARNIMVATGLSQG--------------ILAQIWNLADMDSDG 331
F D + L G + + +G I+ + D ++DG
Sbjct: 72 HYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDG 131
Query: 332 QLSCDEFVLAM 342
+ EF ++
Sbjct: 132 YIDYAEFAKSL 142
Score = 29.6 bits (66), Expect = 1.1
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 436 ADTDQDGKMNINEFVIA 452
D + DG ++ EF +
Sbjct: 125 DDKNNDGYIDYAEFAKS 141
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 1.0
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 26 EDKRKENYEKGQAELE----RRRKALELPHQSSFNRA 58
+ +E EK + +LE R+ + +E + NR
Sbjct: 106 KVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN--NRI 140
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 29.1 bits (65), Expect = 1.1
Identities = 3/28 (10%), Positives = 13/28 (46%)
Query: 315 QGILAQIWNLADMDSDGQLSCDEFVLAM 342
+ ++ + D + D ++ E+ + +
Sbjct: 55 EAAFQKLMSNLDSNRDNEVDFQEYCVFL 82
Score = 28.3 bits (63), Expect = 1.7
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 419 LMQSGLP--------VATLGQIWSLADTDQDGKMNINEFVI 451
L+ LP A ++ S D+++D +++ E+ +
Sbjct: 40 LLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCV 80
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 29.0 bits (65), Expect = 1.1
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 315 QGILAQIWNLADMDSDGQLSCDEFVLAM 342
+ +I D DG++ F +
Sbjct: 48 PLAVDKIMKDLDQCRDGKVGFQSFFSLI 75
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 30.8 bits (69), Expect = 1.2
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 221 ESPWGAFINGWLSTKEKDLEVNNSNLVDLKKTLANMMS 258
+S G F+ W E ++ N N++D+ L+ +
Sbjct: 139 DSYQGKFMTEWNPVWEAAVKENEFNVIDISLGLSKVWE 176
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 30.2 bits (67), Expect = 1.4
Identities = 18/91 (19%), Positives = 26/91 (28%)
Query: 129 QAKGGYLIVSGGGSGPSPLSTSIVSPPNTVAPPSSTTPLIPGITSPPGTLQGGITSPVSI 188
+A + + L T S T L PG PGT G +P S
Sbjct: 227 EAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSY 286
Query: 189 IPGATSPPNVPAAITKLTPPGPLTPDKPPAP 219
PG++ N +P +
Sbjct: 287 GPGSSGTWNPGRPEPGSAGTWNPGRPEPGSA 317
Score = 29.1 bits (64), Expect = 3.5
Identities = 16/87 (18%), Positives = 17/87 (19%), Gaps = 1/87 (1%)
Query: 140 GGSGPSPLSTSIVSPPNTVAP-PSSTTPLIPGITSPPGTLQGGITSPVSIIPGATSPPNV 198
G P N P P S PG P P G +P
Sbjct: 279 GNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRP 338
Query: 199 PAAITKLTPPGPLTPDKPPAPVESPWG 225
PG P G
Sbjct: 339 EPGSAGTWNPGRPEPGSAGTWNTGSSG 365
Score = 28.7 bits (63), Expect = 4.3
Identities = 14/88 (15%), Positives = 18/88 (20%), Gaps = 12/88 (13%)
Query: 140 GGSGPSPLSTSIVSPPNTVAP----PSSTTPLIPGITSPPGTLQGGITSPVSIIPGATSP 195
G +G T P P S PG P P G +
Sbjct: 302 GSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNT 361
Query: 196 PNVPAAITKLTPPGPLTPDKPPAPVESP 223
+ + PD P
Sbjct: 362 GS--------SGSSSFRPDSSGHGNIRP 381
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 30.3 bits (68), Expect = 1.4
Identities = 22/146 (15%), Positives = 34/146 (23%), Gaps = 9/146 (6%)
Query: 78 DSTPGSSCSASHTSATNGPCHPSLTSPTHWYLQGKKYHTHVFTAGQFCMTIQAKGGYLIV 137
D T S+ H+++ P + + PT Y F MT+ G
Sbjct: 17 DLTISSAIQNIHSASKGLPLNHAALPPTD-------YDRSPFVTSPISMTMPPHGSLQGY 69
Query: 138 SGGGSGPSPLSTSIVSPPNTVAPPSSTTPLIPGITSPPGTLQGGITSPVSIIPGATSPPN 197
G PS S P T +P S I + +
Sbjct: 70 QTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPAS--IPHLILELLKCEPDEP 127
Query: 198 VPAAITKLTPPGPLTPDKPPAPVESP 223
A + +
Sbjct: 128 QVQAKIMAYLQQEQANRSKHEKLSTF 153
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 28.6 bits (64), Expect = 1.4
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 315 QGILAQIWNLADMDSDGQLSCDEFVLAM 342
+ L ++ D +SD Q+ E+ + +
Sbjct: 53 EEGLKKLMGSLDENSDQQVDFQEYAVFL 80
Score = 27.5 bits (61), Expect = 3.0
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 8/41 (19%)
Query: 419 LMQSGLPV--------ATLGQIWSLADTDQDGKMNINEFVI 451
L+ LP L ++ D + D +++ E+ +
Sbjct: 38 LLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAV 78
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 28.3 bits (63), Expect = 1.8
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 315 QGILAQIWNLADMDSDGQLSCDEFVLAM 342
++ +I N D + D ++ +EFV+ +
Sbjct: 52 PMLVEKIMNDLDSNKDNEVDFNEFVVLV 79
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 28.7 bits (64), Expect = 1.8
Identities = 3/28 (10%), Positives = 13/28 (46%)
Query: 315 QGILAQIWNLADMDSDGQLSCDEFVLAM 342
+ ++ + D + D ++ E+ + +
Sbjct: 64 EAAFQKLMSNLDSNRDNEVDFQEYCVFL 91
Score = 28.0 bits (62), Expect = 2.7
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 419 LMQSGLPVATLGQIWSLADTDQDGKMNINEFVI 451
+ A ++ S D+++D +++ E+ +
Sbjct: 57 FLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCV 89
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 29.5 bits (66), Expect = 2.1
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 346 DLAKGGEKIPVPL--PID--MIPPAFRRQRQN 373
D+A+G E+IP+P +D P ++ QN
Sbjct: 34 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQN 65
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 29.7 bits (66), Expect = 2.3
Identities = 25/153 (16%), Positives = 45/153 (29%), Gaps = 15/153 (9%)
Query: 50 PHQSSFNRALCATTPHHETSSSAHNPGWDSTPGSSCSASHTSATNGPCHPSLTSPTHWYL 109
H + +T + + +S G + P S + G H +++ +
Sbjct: 5 HHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLS---- 60
Query: 110 QGKKYHTHVFTAGQFCMTIQAKGGYLIVSGGGSGPSPLSTSIVSPPNTVAPPSSTTPLIP 169
+ + G I + G +S + ST + + P SS+
Sbjct: 61 ------SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSED--- 111
Query: 170 GITSPPGTLQGGITSPVSIIPGATSPPNVPAAI 202
PP L G + P S AI
Sbjct: 112 --IKPPLGLNGVLKVPAHPSGNMASFTKHICAI 142
Score = 29.7 bits (66), Expect = 2.7
Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 10/93 (10%)
Query: 140 GGSGPSPLSTSIVSPPNTVAPPSSTTPLIPGITSPPGTLQG----GITSPVSIIPGATSP 195
S SP ++ P ++ P PG P + G+ P S+I P
Sbjct: 21 NSSLTSPTGRGSMAAP-SLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGP 79
Query: 196 -----PNVPAAITKLTPPGPLTPDKPPAPVESP 223
P P P +P P + E
Sbjct: 80 HSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDI 112
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 28.1 bits (61), Expect = 5.1
Identities = 14/85 (16%), Positives = 20/85 (23%)
Query: 142 SGPSPLSTSIVSPPNTVAPPSSTTPLIPGITSPPGTLQGGITSPVSIIPGATSPPNVPAA 201
P S S + V PP TP +L P + + P
Sbjct: 25 GATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEV 84
Query: 202 ITKLTPPGPLTPDKPPAPVESPWGA 226
P A E+ +
Sbjct: 85 AGGTQPAAGAQEPGETAASEAASSS 109
Score = 28.1 bits (61), Expect = 6.3
Identities = 12/80 (15%), Positives = 18/80 (22%)
Query: 144 PSPLSTSIVSPPNTVAPPSSTTPLIPGITSPPGTLQGGITSPVSIIPGATSPPNVPAAIT 203
SP +T + + P TP SP +G P +
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSL 61
Query: 204 KLTPPGPLTPDKPPAPVESP 223
P P+
Sbjct: 62 FEDTFVPEISVTTPSQPAEA 81
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 28.7 bits (63), Expect = 5.2
Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 387 NVSRHERTR--FETHFQ-AMKPVNGIVTGDQVKGFL--MQSGLPVATLGQIWSLADTDQD 441
++ + ++ + + + A K + + ++K FL + + +I+ D Q
Sbjct: 2 SMDQRQKLQHWIHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQT 61
Query: 442 GKMNINEFVIACKLIS 457
+ E K+++
Sbjct: 62 DSLEDEEIETFYKMLT 77
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis,
electron transfer, membrane proteins, large complexes;
HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum}
PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Length = 251
Score = 28.1 bits (61), Expect = 5.8
Identities = 13/97 (13%), Positives = 22/97 (22%)
Query: 148 STSIVSPPNTVAPPSSTTPLIPGITSPPGTLQGGITSPVSIIPGATSPPNVPAAITKLTP 207
+ + + P + + G + S + L
Sbjct: 3 TVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLAS 62
Query: 208 PGPLTPDKPPAPVESPWGAFINGWLSTKEKDLEVNNS 244
PG LT P P G + E+ N
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNG 99
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 7.5
Identities = 7/21 (33%), Positives = 8/21 (38%), Gaps = 5/21 (23%)
Query: 201 AITKLTPPGPL---TPDKPPA 218
A+ KL L D PA
Sbjct: 21 ALKKLQ--ASLKLYADDSAPA 39
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati
regulator, DNA damage, DNA repair, DNA-binding, nucleus,
ST genomics; HET: SAH; 1.59A {Homo sapiens}
Length = 290
Score = 27.5 bits (61), Expect = 9.0
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 346 DLAKGGEKIPVPL-PIDMIPPAFRRQRQN 373
D+A G E +PV P P F+ +
Sbjct: 16 DVACGQENLPVGAWPPGAAPAPFQYTPDH 44
>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_U
Length = 1289
Score = 27.9 bits (61), Expect = 9.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 376 TLAANVAMDPWNVSRHERTRFETHFQAMKPVNGIVTGDQVKGF 418
L AN +PW R++RT Q +P+ G+V Q+ GF
Sbjct: 33 DLDANPGREPWKPLRNQRTNNIVAVQLFRPLQGLVLDTQLYGF 75
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting,
protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP:
a.4.5.54 a.4.5.54
Length = 566
Score = 27.7 bits (60), Expect = 10.0
Identities = 29/217 (13%), Positives = 60/217 (27%), Gaps = 13/217 (5%)
Query: 59 LCATTPHHETSSSAHNPGWDSTPGSSCSASHTSATNGPC-------HPSLT---SPTHWY 108
C +E + S+ N P ++ + C HP + H
Sbjct: 145 NCGVPADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGNCEICGHRL 204
Query: 109 LQGKKYHTHVFTAGQFCMTIQAKGGYLIVSGGGSGPSPLSTSIVSPPNTVAPPSST--TP 166
K + + + + ++ S S LS+S + +T S +
Sbjct: 205 PNASKVRSKLNRLNFHDSRVHIELEKNSLARNKSSHSALSSSSSTGSSTEFVQLSFRKSD 264
Query: 167 LIPGITSPPGTLQGGITSPVSIIPGATSPPNVPAAITKLTPPGPLTPDKPPAPVESPWGA 226
+ + L+ +T I + K + P
Sbjct: 265 GVLFSQATERALENILTEKNKHIFNQNVVSVNGVDMRKGASSHEYNNEVPFIE-TKLSRI 323
Query: 227 FINGWLSTKEKDLEVNNSNLVDLKKTLANMMSDSEKL 263
I+ ++E L N+ + L +MS + +
Sbjct: 324 GISSLEKSRENQLLNNDILFNNALTDLNKLMSLATSI 360
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.403
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,449,268
Number of extensions: 444068
Number of successful extensions: 1755
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1571
Number of HSP's successfully gapped: 418
Length of query: 487
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 390
Effective length of database: 3,993,456
Effective search space: 1557447840
Effective search space used: 1557447840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.4 bits)