BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7070
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 33 IGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVI 92
I WL+ + P+FGW Y EG + +CS+DY+SR + R+ L + + GF P+ +I
Sbjct: 156 IFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILII 215
Query: 93 TYCYVFILHVVLAHGKEMSNL 113
+CY I+ V H KEM+ +
Sbjct: 216 FFCYFNIVMSVSNHEKEMAAM 236
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 33 IGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVI 92
I WL+ + P+FGW Y EG + +CS+DY+SR + R+ L + + GF P+ +I
Sbjct: 157 IFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILII 216
Query: 93 TYCYVFILHVVLAHGKEMSNL 113
+CY I+ V H KEM+ +
Sbjct: 217 FFCYFNIVMSVSNHEKEMAAM 237
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 36 WLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMS--RTMSNRAFYLYLLMFGFILPVAVIT 93
W+ PPL GWS YIPEG SC DY + +N +F +Y+ + FI+P+ VI
Sbjct: 162 WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIF 221
Query: 94 YCY---VFILHVVLAHGKEMSNLK 114
+CY VF + A +E + +
Sbjct: 222 FCYGQLVFTVKEAAAQQQESATTQ 245
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 36 WLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMS--RTMSNRAFYLYLLMFGFILPVAVIT 93
W+ PPL GWS YIPEG SC DY + +N +F +Y+ + FI+P+ VI
Sbjct: 161 WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIF 220
Query: 94 YCY---VFILHVVLAHGKEMSNLK 114
+CY VF + A +E + +
Sbjct: 221 FCYGQLVFTVKEAAAQQQESATTQ 244
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 36 WLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMS--RTMSNRAFYLYLLMFGFILPVAVIT 93
W+ PPL GWS YIPEG SC DY + +N +F +Y+ + FI+P+ VI
Sbjct: 162 WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIF 221
Query: 94 YCY---VFILHVVLAHGKEMSNLK 114
+CY VF + A +E + +
Sbjct: 222 FCYGQLVFTVKEAAAQQQESATTQ 245
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 36 WLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMS--RTMSNRAFYLYLLMFGFILPVAVIT 93
W+ PPL GWS YIPEG SC DY + +N +F +Y+ + FI+P+ VI
Sbjct: 161 WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIF 220
Query: 94 YCY---VFILHVVLAHGKEMSNLK 114
+CY VF + A +E + +
Sbjct: 221 FCYGQLVFTVKEAAAQQQESATTQ 244
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 36 WLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMS--RTMSNRAFYLYLLMFGFILPVAVIT 93
W+ PPL GWS YIPEG SC DY + +N +F +Y+ + FI+P+ VI
Sbjct: 162 WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIF 221
Query: 94 YCY---VFILHVVLAHGKEMSNLK 114
+CY VF + A +E + +
Sbjct: 222 FCYGQLVFTVKEAAAQQQESATTQ 245
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 36 WLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMS--RTMSNRAFYLYLLMFGFILPVAVIT 93
W+ PPL GWS YIPEG SC DY + +N +F +Y+ + FI+P+ VI
Sbjct: 162 WVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIF 221
Query: 94 YCY---VFILHVVLAHGKEMSNLK 114
+CY VF + A +E + +
Sbjct: 222 FCYGQLVFTVKEAAAQQQESATTQ 245
>pdb|1EDV|A Chain A, Solution Structure Of 2nd Intradiskal Loop Of Bovine
Rhodopsin (Residues 172-205)
Length = 34
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 47 LFGWSCYIPEGFMTSCSWDYMS--RTMSNRAFYL 78
L GWS YIPEG SC DY + +N +F +
Sbjct: 1 LVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVI 34
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 31 VCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLL--MFGFILP 88
VC+G W L+LP Y P C ++ + + L +L FGFI+P
Sbjct: 128 VCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVC-YEVLGNDTAKWRMVLRILPHTFGFIVP 186
Query: 89 VAVITYCYVFILHVVL-AH-GKEMSNLKTTGSYTLL 122
+ V+ +CY F L + AH G++ ++ + L+
Sbjct: 187 LFVMLFCYGFTLRTLFKAHMGQKHRAMRVIFAVVLI 222
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 28.9 bits (63), Expect = 0.92, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 76 FYLYLLMFGFILPVAVITYCYVFIL 100
F + + +F FI+PV VI+ CY ++
Sbjct: 289 FAICIFLFSFIVPVLVISVCYSLMI 313
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 34 GAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVIT 93
W+ F ++ P LFG++ G T CS +SN F +Y + F LP V
Sbjct: 165 AVWVLAFAVSCPLLFGFNT---TGDPTVCS-------ISNPDFVIYSSVVSFYLPFGVTV 214
Query: 94 YCYVFILHVVLAHGKEMS 111
Y I +VVL + +
Sbjct: 215 LVYARI-YVVLKQRRRKN 231
>pdb|2NSM|A Chain A, Crystal Structure Of The Human Carboxypeptidase N
(kininase I) Catalytic Domain
Length = 439
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 49 GWSC--YIPEGFMTSCSWDYMSRTMSN 73
GW+C Y P+G SW +S+ M +
Sbjct: 249 GWNCGDYFPDGITNGASWYSLSKGMQD 275
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 14/76 (18%)
Query: 31 VCIGAWLYVFCLTLPPLFGWSC------YIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFG 84
V +G W+ LT+P + YI + F + W + F +M G
Sbjct: 166 VYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVV--------FQFQHIMVG 217
Query: 85 FILPVAVITYCYVFIL 100
ILP VI CY I+
Sbjct: 218 LILPGIVILSCYCIII 233
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 14/76 (18%)
Query: 31 VCIGAWLYVFCLTLPPLFGWSC------YIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFG 84
V +G W+ LT+P + YI + F + W + F +M G
Sbjct: 166 VYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVV--------FQFQHIMVG 217
Query: 85 FILPVAVITYCYVFIL 100
ILP VI CY I+
Sbjct: 218 LILPGIVILSCYCIII 233
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 80 LLMFGFILPVAVITYCYVFIL 100
+ +F F++P+ +IT CY +L
Sbjct: 182 VFLFAFVVPILIITVCYGLML 202
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 14/76 (18%)
Query: 31 VCIGAWLYVFCLTLPPLFGWSC------YIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFG 84
V +G W+ LT+P + YI + F + W + F +M G
Sbjct: 166 VYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVV--------FQFQHIMVG 217
Query: 85 FILPVAVITYCYVFIL 100
ILP VI CY I+
Sbjct: 218 LILPGIVILSCYCIII 233
>pdb|1AD3|A Chain A, Class 3 Aldehyde Dehydrogenase Complex With Nicotinamide-
Adenine-Dinucleotide
pdb|1AD3|B Chain B, Class 3 Aldehyde Dehydrogenase Complex With Nicotinamide-
Adenine-Dinucleotide
Length = 452
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 33 IGAWLYVFCLTLPPLFG 49
IGAW Y F LT+ P+ G
Sbjct: 110 IGAWNYPFNLTIQPMVG 126
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 80 LLMFGFILPVAVITYCY 96
+ +F FI+PV +IT CY
Sbjct: 185 VFIFAFIMPVLIITVCY 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.142 0.480
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,215,623
Number of Sequences: 62578
Number of extensions: 101879
Number of successful extensions: 180
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 19
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)