Query psy7070
Match_columns 130
No_of_seqs 126 out of 1382
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 17:20:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4220|consensus 99.3 5.6E-12 1.2E-16 91.7 6.1 93 14-110 133-227 (503)
2 PF00001 7tm_1: 7 transmembran 99.0 5.7E-09 1.2E-13 71.2 8.8 94 15-110 88-182 (257)
3 PHA03235 DNA packaging protein 98.9 1.6E-08 3.6E-13 75.1 8.3 85 23-107 143-235 (409)
4 PHA02834 chemokine receptor-li 98.8 4.9E-08 1.1E-12 70.4 8.5 83 24-107 137-220 (323)
5 PHA02638 CC chemokine receptor 98.8 3.9E-08 8.4E-13 73.3 7.8 88 19-106 203-303 (417)
6 KOG4219|consensus 98.8 3.4E-09 7.5E-14 77.1 2.1 88 21-108 143-241 (423)
7 PHA03234 DNA packaging protein 98.8 6.1E-08 1.3E-12 70.4 8.4 77 30-106 149-227 (338)
8 PHA03087 G protein-coupled che 98.6 1.8E-07 4E-12 67.5 7.9 89 18-107 145-234 (335)
9 KOG2087|consensus 97.6 0.00021 4.6E-09 51.9 6.0 85 23-111 143-227 (363)
10 PF05296 TAS2R: Mammalian tast 96.2 0.043 9.4E-07 39.5 7.9 40 76-115 180-219 (303)
11 PF10328 7TM_GPCR_Srx: Serpent 94.4 0.084 1.8E-06 37.2 4.4 32 17-48 100-131 (274)
12 PF10323 7TM_GPCR_Srv: Serpent 94.3 0.045 9.8E-07 39.0 2.9 85 18-107 110-194 (283)
13 PF10324 7TM_GPCR_Srw: Serpent 94.0 0.17 3.6E-06 36.4 5.5 93 20-112 116-228 (318)
14 PF13853 7tm_4: Olfactory rece 88.6 0.019 4.1E-07 36.8 -4.0 77 30-106 5-87 (144)
15 PF03402 V1R: Vomeronasal orga 87.0 0.74 1.6E-05 32.7 2.9 92 24-117 91-188 (265)
16 COG3924 Predicted membrane pro 83.8 5.6 0.00012 22.4 4.8 20 82-101 48-67 (80)
17 PF11710 Git3: G protein-coupl 83.7 5.1 0.00011 27.2 5.7 34 76-109 167-200 (201)
18 PF04789 DUF621: Protein of un 70.1 39 0.00085 24.5 7.7 77 25-102 131-212 (305)
19 PF10320 7TM_GPCR_Srsx: Serpen 66.9 41 0.00089 23.5 7.2 48 16-67 93-140 (257)
20 PF15086 UPF0542: Uncharacteri 62.5 26 0.00057 19.8 4.4 26 82-107 26-52 (74)
21 PF10322 7TM_GPCR_Sru: Serpent 61.2 58 0.0013 23.8 6.8 19 89-107 208-226 (307)
22 COG1862 YajC Preprotein transl 61.1 7.3 0.00016 23.4 1.8 25 85-109 12-36 (97)
23 PRK04989 psbM photosystem II r 60.9 17 0.00036 17.4 2.6 19 80-98 10-28 (35)
24 TIGR03038 PS_II_psbM photosyst 57.3 21 0.00045 16.9 2.7 19 80-98 10-28 (33)
25 PF05241 EBP: Emopamil binding 56.8 33 0.00072 23.2 4.7 31 76-106 161-191 (194)
26 CHL00080 psbM photosystem II p 54.8 23 0.0005 16.8 2.5 19 80-98 10-28 (34)
27 PF10327 7TM_GPCR_Sri: Serpent 54.0 38 0.00083 24.5 4.9 31 82-112 199-229 (303)
28 PHA03093 EEV glycoprotein; Pro 53.8 16 0.00036 24.5 2.7 10 84-93 131-140 (185)
29 KOG3045|consensus 53.6 8.1 0.00017 27.8 1.3 8 99-106 171-178 (325)
30 TIGR03052 PS_I_psaI photosyste 51.7 19 0.00041 16.8 2.0 20 80-99 8-27 (31)
31 PRK11877 psaI photosystem I re 51.1 30 0.00065 16.9 3.3 22 78-99 13-34 (38)
32 CHL00186 psaI photosystem I su 48.1 33 0.00072 16.6 3.2 22 78-99 9-30 (36)
33 PF05151 PsbM: Photosystem II 47.5 31 0.00067 16.1 3.7 18 82-99 12-29 (31)
34 PRK06298 type III secretion sy 46.3 54 0.0012 24.5 4.7 22 1-22 1-22 (356)
35 PF15333 TAF1D: TATA box-bindi 44.8 14 0.0003 25.3 1.3 15 7-21 59-73 (217)
36 PF09726 Macoilin: Transmembra 44.4 85 0.0018 25.8 5.8 21 24-44 25-45 (697)
37 PF02699 YajC: Preprotein tran 42.3 43 0.00093 19.2 3.0 19 90-108 10-28 (82)
38 PF10321 7TM_GPCR_Srt: Serpent 41.9 1.2E+02 0.0027 22.1 6.0 23 87-109 206-228 (313)
39 PF15012 DUF4519: Domain of un 41.1 56 0.0012 17.5 3.0 8 30-37 36-43 (56)
40 PF10587 EF-1_beta_acid: Eukar 40.6 25 0.00055 15.9 1.4 9 3-11 9-17 (28)
41 TIGR02976 phageshock_pspB phag 40.2 72 0.0016 18.1 3.7 9 85-93 6-14 (75)
42 PF03904 DUF334: Domain of unk 40.0 1.3E+02 0.0028 21.1 7.5 23 82-104 203-225 (230)
43 KOG1380|consensus 39.8 15 0.00033 27.2 1.0 21 31-51 221-241 (409)
44 KOG4740|consensus 39.1 1.1E+02 0.0024 24.4 5.5 33 6-42 326-358 (564)
45 PF01534 Frizzled: Frizzled/Sm 38.9 1.6E+02 0.0035 21.8 6.7 40 27-67 135-174 (328)
46 PF05568 ASFV_J13L: African sw 38.8 1.1E+02 0.0024 19.9 4.7 15 78-92 31-45 (189)
47 PLN00090 photosystem II reacti 38.4 87 0.0019 18.7 3.8 21 79-99 79-99 (113)
48 KOG0721|consensus 37.9 39 0.00084 23.5 2.6 18 25-42 68-85 (230)
49 PRK14094 psbM photosystem II r 37.5 35 0.00076 17.5 1.8 21 79-99 9-29 (50)
50 PHA01815 hypothetical protein 37.4 61 0.0013 16.5 4.3 17 83-99 13-29 (55)
51 PRK06531 yajC preprotein trans 36.5 23 0.0005 21.9 1.3 20 87-106 7-26 (113)
52 PF03839 Sec62: Translocation 35.9 1.1E+02 0.0025 21.3 4.7 7 62-68 127-133 (224)
53 PF06305 DUF1049: Protein of u 35.6 75 0.0016 17.0 3.9 33 76-108 23-55 (68)
54 PF06692 MNSV_P7B: Melon necro 35.5 62 0.0014 17.2 2.6 9 88-96 16-24 (61)
55 KOG3972|consensus 35.1 1.5E+02 0.0031 20.6 5.0 25 27-51 31-57 (252)
56 PRK09458 pspB phage shock prot 34.9 90 0.002 17.8 3.5 10 85-94 6-15 (75)
57 PF10317 7TM_GPCR_Srd: Serpent 33.4 1.8E+02 0.0039 20.7 6.8 23 90-112 194-216 (292)
58 TIGR00739 yajC preprotein tran 32.5 27 0.00058 20.2 1.1 18 91-108 12-29 (84)
59 PRK13718 conjugal transfer pro 32.3 1E+02 0.0023 17.7 4.9 22 89-110 56-77 (84)
60 TIGR02736 cbb3_Q_epsi cytochro 31.9 88 0.0019 16.7 3.1 21 86-106 6-26 (56)
61 PF11395 DUF2873: Protein of u 31.5 71 0.0015 15.5 3.9 7 91-97 25-31 (43)
62 PF04819 DUF716: Family of unk 30.9 1.4E+02 0.0031 18.9 6.4 11 32-42 72-82 (137)
63 KOG3114|consensus 30.7 2.1E+02 0.0046 20.8 6.2 19 29-47 155-173 (290)
64 PF03300 Tenui_NS4: Tenuivirus 29.3 29 0.00063 24.3 1.0 30 2-31 21-50 (283)
65 KOG3816|consensus 29.0 17 0.00037 27.5 -0.2 12 3-14 179-190 (526)
66 PF14494 DUF4436: Domain of un 28.9 1.6E+02 0.0035 21.0 4.7 12 28-39 170-181 (256)
67 COG4665 FcbT2 TRAP-type mannit 28.4 1.9E+02 0.0041 19.4 5.4 30 74-103 90-119 (182)
68 COG3086 RseC Positive regulato 28.4 1.1E+02 0.0024 19.9 3.4 15 83-97 80-94 (150)
69 PF15050 SCIMP: SCIMP protein 28.2 1.6E+02 0.0034 18.5 4.5 7 99-105 30-36 (133)
70 PF04246 RseC_MucC: Positive r 28.2 1.1E+02 0.0023 19.1 3.4 12 83-94 73-84 (135)
71 PF06716 DUF1201: Protein of u 28.0 95 0.0021 15.9 5.4 15 90-104 22-36 (54)
72 PRK05886 yajC preprotein trans 28.0 65 0.0014 19.8 2.2 22 85-106 6-28 (109)
73 PF02118 Srg: Srg family chemo 27.8 1.4E+02 0.0031 20.7 4.3 18 90-107 182-199 (275)
74 PLN02250 lipid phosphate phosp 27.5 2.3E+02 0.0049 20.9 5.3 15 82-96 73-87 (314)
75 PF04791 LMBR1: LMBR1-like mem 27.2 2E+02 0.0043 22.0 5.3 18 25-42 29-46 (471)
76 PHA00453 hypothetical protein 26.3 21 0.00046 17.4 -0.1 17 4-20 17-33 (41)
77 PF10669 Phage_Gp23: Protein g 26.1 44 0.00095 20.1 1.2 13 89-101 27-39 (121)
78 PRK08455 fliL flagellar basal 25.8 40 0.00086 22.6 1.1 6 1-6 1-6 (182)
79 PF12297 EVC2_like: Ellis van 25.7 1.2E+02 0.0026 23.3 3.7 29 73-101 62-90 (429)
80 COG1377 FlhB Flagellar biosynt 25.5 2.8E+02 0.0062 20.9 5.5 25 77-101 84-108 (363)
81 PF05393 Hum_adeno_E3A: Human 24.9 1.6E+02 0.0034 17.4 3.8 20 89-108 44-63 (94)
82 PF11085 YqhR: Conserved membr 24.6 2.2E+02 0.0048 19.0 7.2 26 79-104 71-96 (173)
83 PF06781 UPF0233: Uncharacteri 24.6 1.4E+02 0.0031 17.5 3.2 20 23-42 28-47 (87)
84 PF06836 DUF1240: Protein of u 24.4 1.1E+02 0.0024 18.2 2.8 33 32-64 46-78 (95)
85 PF05055 DUF677: Protein of un 23.6 2.3E+02 0.0051 21.1 4.8 6 41-46 203-208 (336)
86 PRK02251 putative septation in 23.5 1.7E+02 0.0037 17.2 3.7 20 24-43 30-49 (87)
87 PF15069 FAM163: FAM163 family 23.4 1.4E+02 0.003 19.4 3.1 19 85-103 16-34 (143)
88 PLN00085 photosystem II reacti 21.7 1.1E+02 0.0025 19.1 2.5 20 80-99 87-106 (149)
89 PF15468 DUF4636: Domain of un 21.6 2.8E+02 0.0062 19.4 4.5 25 78-102 38-62 (243)
90 PHA02650 hypothetical protein; 21.4 1.8E+02 0.0039 16.8 3.6 17 85-101 58-74 (81)
91 PLN02715 lipid phosphate phosp 21.2 3.5E+02 0.0077 20.1 5.5 15 82-96 98-112 (327)
92 PF01534 Frizzled: Frizzled/Sm 21.1 1.5E+02 0.0032 22.0 3.4 29 74-102 225-253 (328)
93 PF12428 DUF3675: Protein of u 20.7 2.3E+02 0.0049 17.7 4.5 13 81-93 102-114 (118)
94 PF13721 SecD-TM1: SecD export 20.6 1.2E+02 0.0026 18.1 2.5 22 29-50 9-30 (101)
95 PF02009 Rifin_STEVOR: Rifin/s 20.2 3.2E+02 0.007 20.0 4.9 13 85-97 265-277 (299)
No 1
>KOG4220|consensus
Probab=99.30 E-value=5.6e-12 Score=91.71 Aligned_cols=93 Identities=22% Similarity=0.351 Sum_probs=72.5
Q ss_pred HhHHhhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceee--cCCcccccccccccccchHHHHHHHHHHHHHHHHHH
Q psy7070 14 KKKKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIP--EGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAV 91 (130)
Q Consensus 14 ~~~~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~--~~~~~~C~~~~~~~~~~~~~~~~~~~~~~f~lPl~i 91 (130)
.|+..|+..+|.+++.++|++.|++|++++.|.++.|...+. ....+.|+.++-+.. .+.....++.|-+|.++
T Consensus 133 TrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFlsnp----~iTfGTAiAAFYlPVti 208 (503)
T KOG4220|consen 133 TRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFLSNP----AITFGTAIAAFYLPVTI 208 (503)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEeecCc----eeehhHHHHHHHhhHHH
Confidence 467789999999999999999999999999999888865432 233458987765422 23444555679999999
Q ss_pred HHHHHHHHHHHHHhccccc
Q psy7070 92 ITYCYVFILHVVLAHGKEM 110 (130)
Q Consensus 92 i~~~y~~I~~~l~~~~~~~ 110 (130)
|.+.|++|++..+++.+..
T Consensus 209 M~~LY~rIyret~kR~k~~ 227 (503)
T KOG4220|consen 209 MTILYWRIYRETRKRQKEL 227 (503)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999988765543
No 2
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=98.97 E-value=5.7e-09 Score=71.20 Aligned_cols=94 Identities=24% Similarity=0.557 Sum_probs=72.0
Q ss_pred hHHhhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCC-cccccccccccccchHHHHHHHHHHHHHHHHHHHH
Q psy7070 15 KKKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGF-MTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVIT 93 (130)
Q Consensus 15 ~~~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~-~~~C~~~~~~~~~~~~~~~~~~~~~~f~lPl~ii~ 93 (130)
++.+|+...+++++..+++++|++++++++|+.++........+ ...|....+... ...+.....++.+++|+++++
T Consensus 88 ~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~ 165 (257)
T PF00001_consen 88 HPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSS--SQIYFIYFFIVFFILPLIIIL 165 (257)
T ss_dssp SHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSH--HHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccceeeee
Confidence 45677888888999999999999999999999776443332222 457876655422 345667777788999999999
Q ss_pred HHHHHHHHHHHhccccc
Q psy7070 94 YCYVFILHVVLAHGKEM 110 (130)
Q Consensus 94 ~~y~~I~~~l~~~~~~~ 110 (130)
++|..|++.++++.++.
T Consensus 166 ~~~~~i~~~~~~~~~~~ 182 (257)
T PF00001_consen 166 ICYIRILRKLRRQRKRI 182 (257)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred eeccccccccccccccc
Confidence 99999999998876653
No 3
>PHA03235 DNA packaging protein UL33; Provisional
Probab=98.85 E-value=1.6e-08 Score=75.13 Aligned_cols=85 Identities=14% Similarity=0.197 Sum_probs=57.8
Q ss_pred cccchhHHHHHHHHHHHHHhhhhhhhhhcc---e--ee-cCCccccccccccccc--chHHHHHHHHHHHHHHHHHHHHH
Q psy7070 23 KKKKKKNRVCIGAWLYVFCLTLPPLFGWSC---Y--IP-EGFMTSCSWDYMSRTM--SNRAFYLYLLMFGFILPVAVITY 94 (130)
Q Consensus 23 ~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~---~--~~-~~~~~~C~~~~~~~~~--~~~~~~~~~~~~~f~lPl~ii~~ 94 (130)
.+++++.++++++|++++++++|+++.... . .. ..+...|...++.+.. ....|.+..+++.|++|+++|++
T Consensus 143 ~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~ 222 (409)
T PHA03235 143 SAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTW 222 (409)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788889999999999999997543211 0 10 1223468654433211 12245566666789999999999
Q ss_pred HHHHHHHHHHhcc
Q psy7070 95 CYVFILHVVLAHG 107 (130)
Q Consensus 95 ~y~~I~~~l~~~~ 107 (130)
||.+|++.++++.
T Consensus 223 ~Y~~I~~~l~~~~ 235 (409)
T PHA03235 223 FYTFFYRTLKRAS 235 (409)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998753
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=98.78 E-value=4.9e-08 Score=70.42 Aligned_cols=83 Identities=17% Similarity=0.407 Sum_probs=54.6
Q ss_pred ccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCccccccccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070 24 KKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTM-SNRAFYLYLLMFGFILPVAVITYCYVFILHV 102 (130)
Q Consensus 24 t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~~~f~lPl~ii~~~y~~I~~~ 102 (130)
+.+++.++++++|+++++.++|+++++.... ..+...|......... +...+.....+..|++|+++|++||.+|++.
T Consensus 137 ~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~-~~~~~~C~~~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~ 215 (323)
T PHA02834 137 SISLSVLLSVAAWVCSVILSMPAMVLYYVDN-TDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYT 215 (323)
T ss_pred ccchHHHHHHHHHHHHHHHHhhHHHHHHhcc-CCCceEEeccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888999999999999876543321 2233468533222111 1112333345678999999999999999999
Q ss_pred HHhcc
Q psy7070 103 VLAHG 107 (130)
Q Consensus 103 l~~~~ 107 (130)
++++.
T Consensus 216 l~~~~ 220 (323)
T PHA02834 216 LKNCK 220 (323)
T ss_pred HHhcc
Confidence 98753
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=98.76 E-value=3.9e-08 Score=73.33 Aligned_cols=88 Identities=16% Similarity=0.334 Sum_probs=58.7
Q ss_pred hhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcce-------eecC--Cccccccccccccc----chHHHHHHHHHHHH
Q psy7070 19 KKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCY-------IPEG--FMTSCSWDYMSRTM----SNRAFYLYLLMFGF 85 (130)
Q Consensus 19 ~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~-------~~~~--~~~~C~~~~~~~~~----~~~~~~~~~~~~~f 85 (130)
++..++.+.+.++++++|++++++++|+++..... ..+. ....|...++.... +...+.+...+++|
T Consensus 203 ~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f 282 (417)
T PHA02638 203 FQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINILGM 282 (417)
T ss_pred ccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCeeeeeccccchhHHHHHHHHHHHHHHHHH
Confidence 44555667777888999999999999997754322 1111 13478655433211 11223444456679
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy7070 86 ILPVAVITYCYVFILHVVLAH 106 (130)
Q Consensus 86 ~lPl~ii~~~y~~I~~~l~~~ 106 (130)
++|+++|++||.+|++.+++.
T Consensus 283 ~lPl~vmi~cY~~I~~~L~~~ 303 (417)
T PHA02638 283 FIPIIIFAFCYIKIILKLKQL 303 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999764
No 6
>KOG4219|consensus
Probab=98.76 E-value=3.4e-09 Score=77.10 Aligned_cols=88 Identities=17% Similarity=0.282 Sum_probs=64.8
Q ss_pred hhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeec----CCccccccccccc---cc-c---hHHHHHHHHHHHHHHHH
Q psy7070 21 KKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPE----GFMTSCSWDYMSR---TM-S---NRAFYLYLLMFGFILPV 89 (130)
Q Consensus 21 ~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~----~~~~~C~~~~~~~---~~-~---~~~~~~~~~~~~f~lPl 89 (130)
.+.+++.+.++++++|++++++++|.++..+..... .....|...++.. .. . ..+|.....++.|++|+
T Consensus 143 ~r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPl 222 (423)
T KOG4219|consen 143 PRPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPL 222 (423)
T ss_pred cCCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHH
Confidence 347888899999999999999999987755443221 1234666555442 11 1 12377788888999999
Q ss_pred HHHHHHHHHHHHHHHhccc
Q psy7070 90 AVITYCYVFILHVVLAHGK 108 (130)
Q Consensus 90 ~ii~~~y~~I~~~l~~~~~ 108 (130)
+++.++|..|.+.||..+.
T Consensus 223 iVl~~~Yt~iav~LW~~~~ 241 (423)
T KOG4219|consen 223 IVLGLAYTVIAVTLWGRRI 241 (423)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 9999999999999998653
No 7
>PHA03234 DNA packaging protein UL33; Provisional
Probab=98.75 E-value=6.1e-08 Score=70.45 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcceeecCCcccccccccccccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7070 30 RVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNR--AFYLYLLMFGFILPVAVITYCYVFILHVVLAH 106 (130)
Q Consensus 30 ~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~~~~~~--~~~~~~~~~~f~lPl~ii~~~y~~I~~~l~~~ 106 (130)
..++++|+.+++.++|.++........++...|...++.+..+.. .+....++++|++|+++|++||..|.+.++++
T Consensus 149 ~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~ 227 (338)
T PHA03234 149 RNIGILFLASAMCAIPAALFVKTEGKKGNYGKCNIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHAL 227 (338)
T ss_pred HHHHHHHHHHHHHHhhHhHeeeeeecCCCCCcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455667999999999987644322222233579876653221111 11122334468999999999999999998763
No 8
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=98.63 E-value=1.8e-07 Score=67.51 Aligned_cols=89 Identities=22% Similarity=0.368 Sum_probs=62.5
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCccccccccccccc-chHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070 18 KKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTM-SNRAFYLYLLMFGFILPVAVITYCY 96 (130)
Q Consensus 18 ~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~~~~~f~lPl~ii~~~y 96 (130)
+|+...+.+++..+++++|+++++..+|++..+... .+.+...|...+..... +...+.+....+.+++|+++++++|
T Consensus 145 ~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y 223 (335)
T PHA03087 145 KSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTK-KDHETLICCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCY 223 (335)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHhccHhheeeee-ccCCCceEEecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888899999999999999999987654432 22334578766653221 1222333345567999999999999
Q ss_pred HHHHHHHHhcc
Q psy7070 97 VFILHVVLAHG 107 (130)
Q Consensus 97 ~~I~~~l~~~~ 107 (130)
.+|.+.++++.
T Consensus 224 ~~i~~~l~~~~ 234 (335)
T PHA03087 224 SKILITLKGIN 234 (335)
T ss_pred HHHHHHHHhcc
Confidence 99999987754
No 9
>KOG2087|consensus
Probab=97.60 E-value=0.00021 Score=51.93 Aligned_cols=85 Identities=24% Similarity=0.396 Sum_probs=61.8
Q ss_pred cccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070 23 KKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYVFILHV 102 (130)
Q Consensus 23 ~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~f~lPl~ii~~~y~~I~~~ 102 (130)
-..+.+..+++..|+.+++.++.|+++.+.+ .....|.+....+.. ..+|.+..++..-.+-+++|.+||.+|+..
T Consensus 143 ~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y---~~~~vClPL~~~~~~-s~g~y~~~~l~~N~lafiiia~~Y~~iy~~ 218 (363)
T KOG2087|consen 143 AKLRPLVLILLLGWLFAFLMALLPLFGISSY---GASSVCLPLHIEEPL-STGYYLVALLGLNLLAFIIIAFSYGKIYCS 218 (363)
T ss_pred ccccHHHHHHHHHHHHHHHHHhccccCCCCC---cccceeeecccCCcc-chhHHHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 3455577888899999999999888874433 233589887654332 343666666677888899999999999999
Q ss_pred HHhcccccc
Q psy7070 103 VLAHGKEMS 111 (130)
Q Consensus 103 l~~~~~~~~ 111 (130)
+++......
T Consensus 219 l~~~~~~~~ 227 (363)
T KOG2087|consen 219 LRKGDLSAT 227 (363)
T ss_pred eecCCCccc
Confidence 987654433
No 10
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=96.20 E-value=0.043 Score=39.53 Aligned_cols=40 Identities=18% Similarity=0.439 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Q psy7070 76 FYLYLLMFGFILPVAVITYCYVFILHVVLAHGKEMSNLKT 115 (130)
Q Consensus 76 ~~~~~~~~~f~lPl~ii~~~y~~I~~~l~~~~~~~~~~~~ 115 (130)
+.......+.++|+++++.+...+...|++|.++++....
T Consensus 180 ~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~ 219 (303)
T PF05296_consen 180 YFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNAT 219 (303)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 3344444789999999999999999999999888876543
No 11
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=94.38 E-value=0.084 Score=37.24 Aligned_cols=32 Identities=22% Similarity=0.112 Sum_probs=25.4
Q ss_pred HhhhhhcccchhHHHHHHHHHHHHHhhhhhhh
Q psy7070 17 KKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLF 48 (130)
Q Consensus 17 ~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~ 48 (130)
.+|+...+.+.+..+++++|++++....+..+
T Consensus 100 ~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~ 131 (274)
T PF10328_consen 100 FKYKKIFSFKNTIILIAFIWLLSIIISTILYF 131 (274)
T ss_pred HHHHhHcCccceehhhhHHHHHHHHHHHHhhh
Confidence 46777888899999999999999876655543
No 12
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=94.27 E-value=0.045 Score=38.99 Aligned_cols=85 Identities=11% Similarity=0.116 Sum_probs=47.6
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070 18 KKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYV 97 (130)
Q Consensus 18 ~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~f~lPl~ii~~~y~ 97 (130)
++....++.....++++-|+..++.++|.....+. ..+.... .....+ .. ..............+-.+..++||.
T Consensus 110 ~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~-~f~~~~~--~~~~~d-~~-~~~~~~~~~~~~~~~~cv~~iv~Y~ 184 (283)
T PF10323_consen 110 RHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDF-YFDNEEN--MSLFVD-PE-FIQRNFLIAFIFVSVTCVICIVCYG 184 (283)
T ss_pred HHhhhccccchhheeeeeehhhhhheeeeeccCce-eeecccc--eeeecC-HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777788888999999999986543222 1111111 111111 11 1111112222334454667789999
Q ss_pred HHHHHHHhcc
Q psy7070 98 FILHVVLAHG 107 (130)
Q Consensus 98 ~I~~~l~~~~ 107 (130)
.++..++++.
T Consensus 185 ~i~~~iRk~~ 194 (283)
T PF10323_consen 185 IIFIFIRKRN 194 (283)
T ss_pred HHHHHHHHhh
Confidence 9999998654
No 13
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=94.05 E-value=0.17 Score=36.37 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=55.1
Q ss_pred hhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeec---CCcccccccccc--cccc-----------h----HHHHHH
Q psy7070 20 KKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPE---GFMTSCSWDYMS--RTMS-----------N----RAFYLY 79 (130)
Q Consensus 20 ~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~---~~~~~C~~~~~~--~~~~-----------~----~~~~~~ 79 (130)
....+++.+..++.++++++.++++|..+.....+.. .....|....+. ...+ . ..+...
T Consensus 116 ~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~ 195 (318)
T PF10324_consen 116 QKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSGFPENYTFPRYMLNISELFTENDCLFFRIYFFI 195 (318)
T ss_pred cccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceeeccccccccccchhhhhhhhhhHHHHHHHHHHh
Confidence 3456788888888888999988888877654433211 112368521100 0000 0 012222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy7070 80 LLMFGFILPVAVITYCYVFILHVVLAHGKEMSN 112 (130)
Q Consensus 80 ~~~~~f~lPl~ii~~~y~~I~~~l~~~~~~~~~ 112 (130)
..++.-++|.+++.++...+...+++..+...+
T Consensus 196 ~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~ 228 (318)
T PF10324_consen 196 DGIFFKIIPCILLPILTILLIIELRKAKKRRKK 228 (318)
T ss_pred hhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhc
Confidence 223336799999999999999999876554433
No 14
>PF13853 7tm_4: Olfactory receptor
Probab=88.57 E-value=0.019 Score=36.83 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcceee-c-CCccccccc---ccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070 30 RVCIGAWLYVFCLTLPPLFGWSCYIP-E-GFMTSCSWD---YMSRT-MSNRAFYLYLLMFGFILPVAVITYCYVFILHVV 103 (130)
Q Consensus 30 ~~i~~iWi~s~~~~~P~~~~~~~~~~-~-~~~~~C~~~---~~~~~-~~~~~~~~~~~~~~f~lPl~ii~~~y~~I~~~l 103 (130)
.+.++.|+.+++..+|.......... + .+..-|... ..+.+ .....+.........+.|++++++.|..|...+
T Consensus 5 ~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~av 84 (144)
T PF13853_consen 5 LLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRAV 84 (144)
T ss_pred hhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEehh
Confidence 45566788887776665432111110 1 111122210 11111 112223333444457899999999999999977
Q ss_pred Hhc
Q psy7070 104 LAH 106 (130)
Q Consensus 104 ~~~ 106 (130)
.+.
T Consensus 85 lki 87 (144)
T PF13853_consen 85 LKI 87 (144)
T ss_pred hcc
Confidence 664
No 15
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=87.01 E-value=0.74 Score=32.71 Aligned_cols=92 Identities=14% Similarity=0.228 Sum_probs=45.0
Q ss_pred ccchhHHHHHHHHHHHHHhhhhhhhh---hcceee---cCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070 24 KKKKKNRVCIGAWLYVFCLTLPPLFG---WSCYIP---EGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYV 97 (130)
Q Consensus 24 t~~~~~~~i~~iWi~s~~~~~P~~~~---~~~~~~---~~~~~~C~~~~~~~~~~~~~~~~~~~~~~f~lPl~ii~~~y~ 97 (130)
.+++....+...|++-+++.....+. ..+... ..+...|........ ....|.... .+.=++.+.+|+..-.
T Consensus 91 ~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~-~~~~~~~~~-~~~D~~fvgLM~~aSg 168 (265)
T PF03402_consen 91 APKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYI-VSSLFATLL-SFRDVLFVGLMIWASG 168 (265)
T ss_pred cCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchh-hhhhhhhHH-HhhHHHHHHHHHhhhh
Confidence 44555556777898877765533221 111111 112246754332211 111222222 1122344566777777
Q ss_pred HHHHHHHhcccccccccccC
Q psy7070 98 FILHVVLAHGKEMSNLKTTG 117 (130)
Q Consensus 98 ~I~~~l~~~~~~~~~~~~~~ 117 (130)
.|...|.+|.++.++..+..
T Consensus 169 yMV~~L~RH~q~VqhIhs~~ 188 (265)
T PF03402_consen 169 YMVFLLYRHHQQVQHIHSSS 188 (265)
T ss_pred hheeeeeecccccccCcCCC
Confidence 77777888877776655443
No 16
>COG3924 Predicted membrane protein [Function unknown]
Probab=83.80 E-value=5.6 Score=22.43 Aligned_cols=20 Identities=25% Similarity=0.639 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7070 82 MFGFILPVAVITYCYVFILH 101 (130)
Q Consensus 82 ~~~f~lPl~ii~~~y~~I~~ 101 (130)
..++.+|++.+++||+.|-.
T Consensus 48 ~aCi~lPllFi~l~~~mvkf 67 (80)
T COG3924 48 MACILLPLLFIVLCWAMVKF 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999986633
No 17
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=83.74 E-value=5.1 Score=27.18 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy7070 76 FYLYLLMFGFILPVAVITYCYVFILHVVLAHGKE 109 (130)
Q Consensus 76 ~~~~~~~~~f~lPl~ii~~~y~~I~~~l~~~~~~ 109 (130)
+.+...-+--++-.+.+++.|..|+..++++.++
T Consensus 167 ~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~~ 200 (201)
T PF11710_consen 167 YRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIRR 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3344433333444677788999999999886543
No 18
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=70.08 E-value=39 Score=24.50 Aligned_cols=77 Identities=10% Similarity=0.176 Sum_probs=39.5
Q ss_pred cchhHHHHHHHHHHHHHhhhhhhhhhcceeec----CCcccccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070 25 KKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPE----GFMTSCSWDYMS-RTMSNRAFYLYLLMFGFILPVAVITYCYVFI 99 (130)
Q Consensus 25 ~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~----~~~~~C~~~~~~-~~~~~~~~~~~~~~~~f~lPl~ii~~~y~~I 99 (130)
+....+.+..+|++++..-.-.+...-.+..+ .....|...... +........+....+++.+|.++.+. |..+
T Consensus 131 s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~~v~~~~P~~IqiiE~ilQ~~IPi~Il~i-YiAI 209 (305)
T PF04789_consen 131 SPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNSVVDISPPRGIQIIEIILQFGIPIFILVI-YIAI 209 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCeeEeeCCCCchhHHHHHHHHhHHHHHHHH-HHHH
Confidence 34555667778888877654433321122221 122367544111 11113445667777889999776643 4444
Q ss_pred HHH
Q psy7070 100 LHV 102 (130)
Q Consensus 100 ~~~ 102 (130)
.-+
T Consensus 210 IiK 212 (305)
T PF04789_consen 210 IIK 212 (305)
T ss_pred HHH
Confidence 433
No 19
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=66.92 E-value=41 Score=23.54 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=24.8
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHHHhhhhhhhhhcceeecCCccccccccc
Q psy7070 16 KKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYM 67 (130)
Q Consensus 16 ~~~~~~~~t~~~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~ 67 (130)
+.+|+...+.+....+.....+.+....+ ++... .+++....|.+...
T Consensus 93 P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~---~~~~~-~~~~~~~~C~pp~a 140 (257)
T PF10320_consen 93 PLRYRTISTRKYLIILLIFPVIYSIFFTV---IGFLY-RDDETIVICNPPLA 140 (257)
T ss_pred hhhhhhcccccchhhHhHHHHHHHHHHHh---heeEe-cCCcccccCCCccc
Confidence 56788888888655554444444444322 21111 12233458976543
No 20
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=62.46 E-value=26 Score=19.77 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=16.9
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhcc
Q psy7070 82 MFGFILPVAVI-TYCYVFILHVVLAHG 107 (130)
Q Consensus 82 ~~~f~lPl~ii-~~~y~~I~~~l~~~~ 107 (130)
++..+.|++++ .+|.++..+.+.++.
T Consensus 26 vll~LtPlfiisa~lSwkLaK~ie~~e 52 (74)
T PF15086_consen 26 VLLILTPLFIISAVLSWKLAKAIEKEE 52 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777666 557777777776543
No 21
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=61.18 E-value=58 Score=23.76 Aligned_cols=19 Identities=5% Similarity=0.065 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q psy7070 89 VAVITYCYVFILHVVLAHG 107 (130)
Q Consensus 89 l~ii~~~y~~I~~~l~~~~ 107 (130)
++++++.++.++.++++..
T Consensus 208 ~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 208 MISIIILNILMFFKLRKLK 226 (307)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4556677788888887754
No 22
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=61.13 E-value=7.3 Score=23.37 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Q psy7070 85 FILPVAVITYCYVFILHVVLAHGKE 109 (130)
Q Consensus 85 f~lPl~ii~~~y~~I~~~l~~~~~~ 109 (130)
++.+++++.+.|+.++|-.+++.+.
T Consensus 12 ll~~vl~~~ifyFli~RPQrKr~K~ 36 (97)
T COG1862 12 LLPLVLIFAIFYFLIIRPQRKRMKE 36 (97)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 4444556677888888877665443
No 23
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=60.91 E-value=17 Score=17.43 Aligned_cols=19 Identities=11% Similarity=0.301 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7070 80 LLMFGFILPVAVITYCYVF 98 (130)
Q Consensus 80 ~~~~~f~lPl~ii~~~y~~ 98 (130)
....+.++|...+++.|.+
T Consensus 10 At~Lfi~iPt~FLlilYvq 28 (35)
T PRK04989 10 ASLLFVLVPTVFLIILYIQ 28 (35)
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 3345677898888888874
No 24
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=57.33 E-value=21 Score=16.89 Aligned_cols=19 Identities=11% Similarity=0.319 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7070 80 LLMFGFILPVAVITYCYVF 98 (130)
Q Consensus 80 ~~~~~f~lPl~ii~~~y~~ 98 (130)
....+.++|.+.+++.|.+
T Consensus 10 At~Lfi~iPt~FLiilYvq 28 (33)
T TIGR03038 10 ATLLFILVPTVFLLILYIQ 28 (33)
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 3345577888888888864
No 25
>PF05241 EBP: Emopamil binding protein ; InterPro: IPR007905 Emopamil binding protein (EBP) is a nonglycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues. The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities [].; GO: 0047750 cholestenol delta-isomerase activity, 0016125 sterol metabolic process, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=56.76 E-value=33 Score=23.17 Aligned_cols=31 Identities=10% Similarity=0.238 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7070 76 FYLYLLMFGFILPVAVITYCYVFILHVVLAH 106 (130)
Q Consensus 76 ~~~~~~~~~f~lPl~ii~~~y~~I~~~l~~~ 106 (130)
|.+....+-.++|+.++.-+|..|...++..
T Consensus 161 y~v~~N~iWivvP~~~l~~s~~~i~~a~~~~ 191 (194)
T PF05241_consen 161 YFVFPNGIWIVVPLLLLYQSWKEIARAFRAA 191 (194)
T ss_pred ehhhcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555556678999999999999998877654
No 26
>CHL00080 psbM photosystem II protein M
Probab=54.82 E-value=23 Score=16.80 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7070 80 LLMFGFILPVAVITYCYVF 98 (130)
Q Consensus 80 ~~~~~f~lPl~ii~~~y~~ 98 (130)
....+..+|...+++.|.+
T Consensus 10 At~LFi~iPt~FLlilyvk 28 (34)
T CHL00080 10 ATALFILVPTAFLLIIYVK 28 (34)
T ss_pred HHHHHHHHHHHHHHHhhee
Confidence 3445567888888888864
No 27
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=54.02 E-value=38 Score=24.45 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q psy7070 82 MFGFILPVAVITYCYVFILHVVLAHGKEMSN 112 (130)
Q Consensus 82 ~~~f~lPl~ii~~~y~~I~~~l~~~~~~~~~ 112 (130)
..+.++-.++..+++..+++.|++...+.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS~ 229 (303)
T PF10327_consen 199 FFGGFLCFVIFIFLTIDMFRMLKKLKKKISK 229 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 3345555677788889999888765554443
No 28
>PHA03093 EEV glycoprotein; Provisional
Probab=53.81 E-value=16 Score=24.47 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=5.5
Q ss_pred HHHHHHHHHH
Q psy7070 84 GFILPVAVIT 93 (130)
Q Consensus 84 ~f~lPl~ii~ 93 (130)
++.+|..-+.
T Consensus 131 g~~LPs~~l~ 140 (185)
T PHA03093 131 SSTLPNSNLM 140 (185)
T ss_pred CCcCCCcchH
Confidence 5677764433
No 29
>KOG3045|consensus
Probab=53.64 E-value=8.1 Score=27.76 Aligned_cols=8 Identities=13% Similarity=0.281 Sum_probs=3.6
Q ss_pred HHHHHHhc
Q psy7070 99 ILHVVLAH 106 (130)
Q Consensus 99 I~~~l~~~ 106 (130)
|++.++++
T Consensus 171 ii~~ik~r 178 (325)
T KOG3045|consen 171 IIRKIKRR 178 (325)
T ss_pred HHHHHHhC
Confidence 34455443
No 30
>TIGR03052 PS_I_psaI photosystem I reaction center subunit VIII. Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.
Probab=51.71 E-value=19 Score=16.82 Aligned_cols=20 Identities=15% Similarity=0.630 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7070 80 LLMFGFILPVAVITYCYVFI 99 (130)
Q Consensus 80 ~~~~~f~lPl~ii~~~y~~I 99 (130)
..+++.+.|.+.|...+..|
T Consensus 8 VPlVglvfPai~Ma~lf~yI 27 (31)
T TIGR03052 8 VPLVGLVFPAVFMALLFRYI 27 (31)
T ss_pred hhHHHHHHHHHHHHHHHHhe
Confidence 34567788888887665543
No 31
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=51.13 E-value=30 Score=16.94 Aligned_cols=22 Identities=14% Similarity=0.570 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7070 78 LYLLMFGFILPVAVITYCYVFI 99 (130)
Q Consensus 78 ~~~~~~~f~lPl~ii~~~y~~I 99 (130)
+...+++.+.|.+.|...+..|
T Consensus 13 I~VPlVGlvfPai~Mallf~yI 34 (38)
T PRK11877 13 IFVPLVGWVFPAVFMVLLGRYI 34 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455667788888887666544
No 32
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=48.13 E-value=33 Score=16.57 Aligned_cols=22 Identities=14% Similarity=0.630 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7070 78 LYLLMFGFILPVAVITYCYVFI 99 (130)
Q Consensus 78 ~~~~~~~f~lPl~ii~~~y~~I 99 (130)
+...+++.+.|.+.|...+..|
T Consensus 9 I~VPlVGlvfPai~Ma~lf~yI 30 (36)
T CHL00186 9 ILVPLVGLVFPAIAMASLFLYI 30 (36)
T ss_pred hHHhHHHHHHHHHHHHHHHHHh
Confidence 4455667888888887766544
No 33
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=47.50 E-value=31 Score=16.06 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy7070 82 MFGFILPVAVITYCYVFI 99 (130)
Q Consensus 82 ~~~f~lPl~ii~~~y~~I 99 (130)
..+.++|...+++.|.+.
T Consensus 12 aLfi~iPt~FLiilyvqT 29 (31)
T PF05151_consen 12 ALFILIPTAFLIILYVQT 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhheEeee
Confidence 345678888888888753
No 34
>PRK06298 type III secretion system protein; Validated
Probab=46.29 E-value=54 Score=24.52 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=12.2
Q ss_pred CchHHHHHHHHhHHhHHhhhhh
Q psy7070 1 MEEDEEKKKKKKKKKKKKKKKK 22 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (130)
|+|..|+--.||.++.|+....
T Consensus 1 M~eKTE~pT~kkl~~ARekGqV 22 (356)
T PRK06298 1 MGEKTEKATPKRLRDARKKGQV 22 (356)
T ss_pred CCCCCCCCChhHHHHHHHcCCC
Confidence 5655555555555555555443
No 35
>PF15333 TAF1D: TATA box-binding protein-associated factor 1D
Probab=44.80 E-value=14 Score=25.26 Aligned_cols=15 Identities=60% Similarity=0.820 Sum_probs=8.2
Q ss_pred HHHHHhHHhHHhhhh
Q psy7070 7 KKKKKKKKKKKKKKK 21 (130)
Q Consensus 7 ~~~~~~~~~~~~~~~ 21 (130)
+++||||++.++|+.
T Consensus 59 kkrkrKkrkkrKYk~ 73 (217)
T PF15333_consen 59 KKRKRKKRKKRKYKP 73 (217)
T ss_pred HHHHHHHhhhhccCc
Confidence 444445555677754
No 36
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=44.41 E-value=85 Score=25.81 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=13.9
Q ss_pred ccchhHHHHHHHHHHHHHhhh
Q psy7070 24 KKKKKNRVCIGAWLYVFCLTL 44 (130)
Q Consensus 24 t~~~~~~~i~~iWi~s~~~~~ 44 (130)
......+-.+++|++.+++-.
T Consensus 25 ~~~~~~~~~~~~w~~~~~~d~ 45 (697)
T PF09726_consen 25 GSTFLYVKFLLVWALVLLADF 45 (697)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 444556667788987766544
No 37
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=42.28 E-value=43 Score=19.21 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhccc
Q psy7070 90 AVITYCYVFILHVVLAHGK 108 (130)
Q Consensus 90 ~ii~~~y~~I~~~l~~~~~ 108 (130)
+++++.|+.+.+.-+++.+
T Consensus 10 ~~~~i~yf~~~rpqkk~~k 28 (82)
T PF02699_consen 10 IIFVIFYFLMIRPQKKQQK 28 (82)
T ss_dssp HHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHhhheecHHHHHHH
Confidence 4455666666665554433
No 38
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=41.90 E-value=1.2e+02 Score=22.11 Aligned_cols=23 Identities=17% Similarity=0.418 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc
Q psy7070 87 LPVAVITYCYVFILHVVLAHGKE 109 (130)
Q Consensus 87 lPl~ii~~~y~~I~~~l~~~~~~ 109 (130)
+-.+++.++|..++..+.+..+.
T Consensus 206 ~~~~~t~~lY~~l~~~l~~k~~~ 228 (313)
T PF10321_consen 206 IVVICTTFLYIYLCYYLIKKSKY 228 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 33566677888888877665333
No 39
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=41.06 E-value=56 Score=17.47 Aligned_cols=8 Identities=13% Similarity=0.210 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q psy7070 30 RVCIGAWL 37 (130)
Q Consensus 30 ~~i~~iWi 37 (130)
-.++++|+
T Consensus 36 P~l~~~~~ 43 (56)
T PF15012_consen 36 PTLAAVFL 43 (56)
T ss_pred hHHHHHHH
Confidence 33444443
No 40
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=40.59 E-value=25 Score=15.95 Aligned_cols=9 Identities=44% Similarity=0.726 Sum_probs=4.7
Q ss_pred hHHHHHHHH
Q psy7070 3 EDEEKKKKK 11 (130)
Q Consensus 3 ~~~~~~~~~ 11 (130)
||+|.++-+
T Consensus 9 ed~ea~r~r 17 (28)
T PF10587_consen 9 EDEEAERIR 17 (28)
T ss_pred ccHHHHHHH
Confidence 556555443
No 41
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=40.21 E-value=72 Score=18.15 Aligned_cols=9 Identities=11% Similarity=0.619 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q psy7070 85 FILPVAVIT 93 (130)
Q Consensus 85 f~lPl~ii~ 93 (130)
+++|+++.+
T Consensus 6 l~~Pliif~ 14 (75)
T TIGR02976 6 LAIPLIIFV 14 (75)
T ss_pred HHHHHHHHH
Confidence 455555443
No 42
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=40.02 E-value=1.3e+02 Score=21.07 Aligned_cols=23 Identities=4% Similarity=0.359 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7070 82 MFGFILPVAVITYCYVFILHVVL 104 (130)
Q Consensus 82 ~~~f~lPl~ii~~~y~~I~~~l~ 104 (130)
.++|.+|.++.+..++-.+-.+|
T Consensus 203 yi~Y~vPY~~~ig~~i~l~~~~~ 225 (230)
T PF03904_consen 203 YIAYLVPYIFAIGLFIYLYEWIR 225 (230)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Confidence 45677777664444433333333
No 43
>KOG1380|consensus
Probab=39.84 E-value=15 Score=27.20 Aligned_cols=21 Identities=33% Similarity=0.885 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhc
Q psy7070 31 VCIGAWLYVFCLTLPPLFGWS 51 (130)
Q Consensus 31 ~i~~iWi~s~~~~~P~~~~~~ 51 (130)
-|+-.|+-+++.++||+++|.
T Consensus 221 hiinTWvGavVGAIPPLMGwA 241 (409)
T KOG1380|consen 221 HIINTWVGAVVGAIPPLMGWA 241 (409)
T ss_pred hhhhhHHHHHhccCCccchhh
Confidence 456689999999999988874
No 44
>KOG4740|consensus
Probab=39.12 E-value=1.1e+02 Score=24.44 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=16.1
Q ss_pred HHHHHHhHHhHHhhhhhcccchhHHHHHHHHHHHHHh
Q psy7070 6 EKKKKKKKKKKKKKKKKKKKKKKNRVCIGAWLYVFCL 42 (130)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~t~~~~~~~i~~iWi~s~~~ 42 (130)
|..++|||++. +.-..+....+-+++|+++..+
T Consensus 326 ~~~~~kkK~~~----R~DCs~t~~GlF~Gi~~li~s~ 358 (564)
T KOG4740|consen 326 ESSKDKKKHHI----RFDCSGTSVGLFLGIALLIGSF 358 (564)
T ss_pred cccchhhcCcc----ceecCCcchHHHHHHHHHHHHH
Confidence 44445555444 3334444455555566554443
No 45
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=38.91 E-value=1.6e+02 Score=21.78 Aligned_cols=40 Identities=18% Similarity=0.057 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhcceeecCCccccccccc
Q psy7070 27 KKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYM 67 (130)
Q Consensus 27 ~~~~~i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~~~~ 67 (130)
++...-+++|.+.+++.+-.+... ..+.++-.+.|+....
T Consensus 135 ~s~yfH~~aW~iP~~~ti~vL~~~-~VdgD~ltGiC~Vg~~ 174 (328)
T PF01534_consen 135 KSSYFHLVAWGIPAVLTIAVLALR-KVDGDELTGICFVGNQ 174 (328)
T ss_pred hcchhhhHHhhhhHHHHHHHHHhc-ccccccccceeEEeCC
Confidence 344455677888777766554432 3344455568976543
No 46
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=38.82 E-value=1.1e+02 Score=19.90 Aligned_cols=15 Identities=13% Similarity=0.653 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy7070 78 LYLLMFGFILPVAVI 92 (130)
Q Consensus 78 ~~~~~~~f~lPl~ii 92 (130)
++.+++.+++|.+++
T Consensus 31 m~tILiaIvVliiii 45 (189)
T PF05568_consen 31 MYTILIAIVVLIIII 45 (189)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344455554443
No 47
>PLN00090 photosystem II reaction center M protein; Provisional
Probab=38.41 E-value=87 Score=18.74 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7070 79 YLLMFGFILPVAVITYCYVFI 99 (130)
Q Consensus 79 ~~~~~~f~lPl~ii~~~y~~I 99 (130)
....++.++|...+++.|+..
T Consensus 79 IATaLFIlIPTaFLLILYVQT 99 (113)
T PLN00090 79 LAVALGTFLPCLFLINLFIQT 99 (113)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 334456788999999888854
No 48
>KOG0721|consensus
Probab=37.90 E-value=39 Score=23.51 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=11.0
Q ss_pred cchhHHHHHHHHHHHHHh
Q psy7070 25 KKKKNRVCIGAWLYVFCL 42 (130)
Q Consensus 25 ~~~~~~~i~~iWi~s~~~ 42 (130)
.....+.+++.|++...+
T Consensus 68 ~~~~~i~lv~~W~v~~fL 85 (230)
T KOG0721|consen 68 STKRKVFLVVGWAVIAFL 85 (230)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 344456677789765544
No 49
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=37.48 E-value=35 Score=17.51 Aligned_cols=21 Identities=5% Similarity=0.018 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7070 79 YLLMFGFILPVAVITYCYVFI 99 (130)
Q Consensus 79 ~~~~~~f~lPl~ii~~~y~~I 99 (130)
.....+.++|...+++.|...
T Consensus 9 iAtaLFi~iPT~FLlilYVkT 29 (50)
T PRK14094 9 VASLLFVGVPTIFLIGLFIST 29 (50)
T ss_pred HHHHHHHHHHHHHhhheeEEe
Confidence 334455678888888888744
No 50
>PHA01815 hypothetical protein
Probab=37.39 E-value=61 Score=16.50 Aligned_cols=17 Identities=6% Similarity=0.372 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7070 83 FGFILPVAVITYCYVFI 99 (130)
Q Consensus 83 ~~f~lPl~ii~~~y~~I 99 (130)
..|++.++++...|+++
T Consensus 13 laflitliilmt~~irv 29 (55)
T PHA01815 13 LAFLITLIILMTLHIRV 29 (55)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 51
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=36.52 E-value=23 Score=21.88 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy7070 87 LPVAVITYCYVFILHVVLAH 106 (130)
Q Consensus 87 lPl~ii~~~y~~I~~~l~~~ 106 (130)
+|+++++..|+.+++--+++
T Consensus 7 l~~vv~~~i~yf~iRPQkKr 26 (113)
T PRK06531 7 IMFVVMLGLIFFMQRQQKKQ 26 (113)
T ss_pred HHHHHHHHHHHheechHHHH
Confidence 34444433333355544443
No 52
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=35.91 E-value=1.1e+02 Score=21.29 Aligned_cols=7 Identities=0% Similarity=-0.558 Sum_probs=3.2
Q ss_pred ccccccc
Q psy7070 62 CSWDYMS 68 (130)
Q Consensus 62 C~~~~~~ 68 (130)
|++.||.
T Consensus 127 lFPlWP~ 133 (224)
T PF03839_consen 127 LFPLWPR 133 (224)
T ss_pred hhhcChH
Confidence 4445543
No 53
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.63 E-value=75 Score=17.03 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy7070 76 FYLYLLMFGFILPVAVITYCYVFILHVVLAHGK 108 (130)
Q Consensus 76 ~~~~~~~~~f~lPl~ii~~~y~~I~~~l~~~~~ 108 (130)
+.+..+++++++-.++....+++.-+.+++..+
T Consensus 23 ~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k 55 (68)
T PF06305_consen 23 LILIAFLLGALLGWLLSLPSRLRLRRRIRRLRK 55 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666655555554433
No 54
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=35.48 E-value=62 Score=17.23 Aligned_cols=9 Identities=11% Similarity=0.667 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy7070 88 PVAVITYCY 96 (130)
Q Consensus 88 Pl~ii~~~y 96 (130)
|++++++|.
T Consensus 16 ~lLiliis~ 24 (61)
T PF06692_consen 16 PLLILIISF 24 (61)
T ss_pred HHHHHHHHH
Confidence 333333333
No 55
>KOG3972|consensus
Probab=35.09 E-value=1.5e+02 Score=20.64 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=16.8
Q ss_pred hhHHHHHH--HHHHHHHhhhhhhhhhc
Q psy7070 27 KKNRVCIG--AWLYVFCLTLPPLFGWS 51 (130)
Q Consensus 27 ~~~~~i~~--iWi~s~~~~~P~~~~~~ 51 (130)
+.++.++. -|++|+++++..+++..
T Consensus 31 RIIiliagaFFWLvSLLisSl~W~~l~ 57 (252)
T KOG3972|consen 31 RIIILIAGAFFWLVSLLISSLVWFGLS 57 (252)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHheE
Confidence 34444443 59999999888777543
No 56
>PRK09458 pspB phage shock protein B; Provisional
Probab=34.95 E-value=90 Score=17.79 Aligned_cols=10 Identities=10% Similarity=0.604 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q psy7070 85 FILPVAVITY 94 (130)
Q Consensus 85 f~lPl~ii~~ 94 (130)
+++|+++.++
T Consensus 6 l~~PliiF~i 15 (75)
T PRK09458 6 LAIPLTIFVL 15 (75)
T ss_pred HHHhHHHHHH
Confidence 4455444333
No 57
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=33.37 E-value=1.8e+02 Score=20.70 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhccccccc
Q psy7070 90 AVITYCYVFILHVVLAHGKEMSN 112 (130)
Q Consensus 90 ~ii~~~y~~I~~~l~~~~~~~~~ 112 (130)
+++.++-.+|.+.+++.....++
T Consensus 194 i~~~~~R~ki~~~L~~~~~~~S~ 216 (292)
T PF10317_consen 194 IVIFFLRRKILKFLNKKSSSMSE 216 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCH
Confidence 44566677788888775444443
No 58
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=32.48 E-value=27 Score=20.24 Aligned_cols=18 Identities=17% Similarity=0.288 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhccc
Q psy7070 91 VITYCYVFILHVVLAHGK 108 (130)
Q Consensus 91 ii~~~y~~I~~~l~~~~~ 108 (130)
++++.|..+.+-.+++.+
T Consensus 12 ~~~i~yf~~~rpqkK~~k 29 (84)
T TIGR00739 12 IFLIFYFLIIRPQRKRRK 29 (84)
T ss_pred HHHHHHHheechHHHHHH
Confidence 345667767665555433
No 59
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=32.34 E-value=1e+02 Score=17.72 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhccccc
Q psy7070 89 VAVITYCYVFILHVVLAHGKEM 110 (130)
Q Consensus 89 l~ii~~~y~~I~~~l~~~~~~~ 110 (130)
+..+.+|+..+.-.++++..+.
T Consensus 56 ~~~~ly~ffs~Ltkl~~~d~~k 77 (84)
T PRK13718 56 LLFILYFFFSALTKLQKHDERK 77 (84)
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 3344555566666666655443
No 60
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=31.88 E-value=88 Score=16.71 Aligned_cols=21 Identities=14% Similarity=0.534 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy7070 86 ILPVAVITYCYVFILHVVLAH 106 (130)
Q Consensus 86 ~lPl~ii~~~y~~I~~~l~~~ 106 (130)
++.+++.++.|.-|++.-+.+
T Consensus 6 ~~ti~lvv~LYgY~yhLYrse 26 (56)
T TIGR02736 6 AFTLLLVIFLYAYIYHLYRSQ 26 (56)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 333445566677666654443
No 61
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=31.45 E-value=71 Score=15.50 Aligned_cols=7 Identities=14% Similarity=0.638 Sum_probs=2.9
Q ss_pred HHHHHHH
Q psy7070 91 VITYCYV 97 (130)
Q Consensus 91 ii~~~y~ 97 (130)
.+++|+.
T Consensus 25 liif~f~ 31 (43)
T PF11395_consen 25 LIIFWFS 31 (43)
T ss_pred HHHHHHH
Confidence 3344443
No 62
>PF04819 DUF716: Family of unknown function (DUF716) ; InterPro: IPR006904 These sequences are a family of uncharacterised hypothetical proteins restricted to eukaryotes. Q9SLW7 from SWISSPROT represents a sequence from Nicotiana tabacum (Common tobacco)which is up regulated in response to TMV infection.
Probab=30.86 E-value=1.4e+02 Score=18.88 Aligned_cols=11 Identities=18% Similarity=0.715 Sum_probs=5.8
Q ss_pred HHHHHHHHHHh
Q psy7070 32 CIGAWLYVFCL 42 (130)
Q Consensus 32 i~~iWi~s~~~ 42 (130)
.=+.|.+...+
T Consensus 72 lqGtWf~Q~g~ 82 (137)
T PF04819_consen 72 LQGTWFWQIGF 82 (137)
T ss_pred HHHHHHHHHHH
Confidence 34567665443
No 63
>KOG3114|consensus
Probab=30.74 E-value=2.1e+02 Score=20.83 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q psy7070 29 NRVCIGAWLYVFCLTLPPL 47 (130)
Q Consensus 29 ~~~i~~iWi~s~~~~~P~~ 47 (130)
.+.+++.|+..-++.+|..
T Consensus 155 ~v~saa~~iy~Y~~ivp~~ 173 (290)
T KOG3114|consen 155 LVTSAATLIYGYLTIVPLA 173 (290)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4556666777777767653
No 64
>PF03300 Tenui_NS4: Tenuivirus non-structural protein NS4; InterPro: IPR004980 This is a non-structural protein found in members of the Tenuivirus family.
Probab=29.35 E-value=29 Score=24.30 Aligned_cols=30 Identities=27% Similarity=0.234 Sum_probs=13.9
Q ss_pred chHHHHHHHHhHHhHHhhhhhcccchhHHH
Q psy7070 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31 (130)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 31 (130)
|+++++++.++||+-.=..+..+..++.+-
T Consensus 21 Ek~~k~~~~~nkK~l~ls~rPLtkGr~tid 50 (283)
T PF03300_consen 21 EKAAKKKEEKNKKKLALSMRPLTKGRMTID 50 (283)
T ss_pred HHHHHhHhhccchhhhcccCCcccceEEhh
Confidence 445544444444433333444455555444
No 65
>KOG3816|consensus
Probab=29.03 E-value=17 Score=27.50 Aligned_cols=12 Identities=50% Similarity=0.675 Sum_probs=5.2
Q ss_pred hHHHHHHHHhHH
Q psy7070 3 EDEEKKKKKKKK 14 (130)
Q Consensus 3 ~~~~~~~~~~~~ 14 (130)
|||.|||-++++
T Consensus 179 qDe~KKKs~~~k 190 (526)
T KOG3816|consen 179 QDEKKKKSGSEK 190 (526)
T ss_pred cchhhhhhcccc
Confidence 444444444433
No 66
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=28.88 E-value=1.6e+02 Score=20.97 Aligned_cols=12 Identities=17% Similarity=0.553 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHH
Q psy7070 28 KNRVCIGAWLYV 39 (130)
Q Consensus 28 ~~~~i~~iWi~s 39 (130)
+.+++++.|+++
T Consensus 170 ~~~i~~vm~~L~ 181 (256)
T PF14494_consen 170 ALFICLVMWALA 181 (256)
T ss_pred HHHHHHHHHHHH
Confidence 344444555544
No 67
>COG4665 FcbT2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.38 E-value=1.9e+02 Score=19.42 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070 74 RAFYLYLLMFGFILPVAVITYCYVFILHVV 103 (130)
Q Consensus 74 ~~~~~~~~~~~f~lPl~ii~~~y~~I~~~l 103 (130)
....-....+.|++|+.++++.|.-=+..+
T Consensus 90 qa~vDllGtifFLlPfc~l~iy~~~~~~~~ 119 (182)
T COG4665 90 QAWVDLLGTIFFLLPFCLLVIYLSWPYVAL 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 344455556679999888766655443333
No 68
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=28.36 E-value=1.1e+02 Score=19.88 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy7070 83 FGFILPVAVITYCYV 97 (130)
Q Consensus 83 ~~f~lPl~ii~~~y~ 97 (130)
+.|++|++.++..++
T Consensus 80 LvYi~PL~~l~v~~~ 94 (150)
T COG3086 80 LVYIFPLVGLFLGAI 94 (150)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555544443
No 69
>PF15050 SCIMP: SCIMP protein
Probab=28.25 E-value=1.6e+02 Score=18.52 Aligned_cols=7 Identities=14% Similarity=0.074 Sum_probs=2.8
Q ss_pred HHHHHHh
Q psy7070 99 ILHVVLA 105 (130)
Q Consensus 99 I~~~l~~ 105 (130)
+++.+.+
T Consensus 30 vcR~~lR 36 (133)
T PF15050_consen 30 VCRWQLR 36 (133)
T ss_pred HHHHHHH
Confidence 3444433
No 70
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=28.17 E-value=1.1e+02 Score=19.15 Aligned_cols=12 Identities=17% Similarity=0.526 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q psy7070 83 FGFILPVAVITY 94 (130)
Q Consensus 83 ~~f~lPl~ii~~ 94 (130)
+.|++|++.+++
T Consensus 73 l~Y~lPll~li~ 84 (135)
T PF04246_consen 73 LVYLLPLLALIA 84 (135)
T ss_pred HHHHHHHHHHHH
Confidence 346666555433
No 71
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=28.02 E-value=95 Score=15.89 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy7070 90 AVITYCYVFILHVVL 104 (130)
Q Consensus 90 ~ii~~~y~~I~~~l~ 104 (130)
.++++..+.+++.+.
T Consensus 22 ~~~~~F~~F~~Kqil 36 (54)
T PF06716_consen 22 FCLVVFIWFVYKQIL 36 (54)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444455555544
No 72
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=27.97 E-value=65 Score=19.77 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=11.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhc
Q psy7070 85 FILPVAV-ITYCYVFILHVVLAH 106 (130)
Q Consensus 85 f~lPl~i-i~~~y~~I~~~l~~~ 106 (130)
.++|+++ +++.|+.+.+--+++
T Consensus 6 ~ll~lv~i~~i~yF~~iRPQkKr 28 (109)
T PRK05886 6 LFLPFLLIMGGFMYFASRRQRKA 28 (109)
T ss_pred HHHHHHHHHHHHHHHHccHHHHH
Confidence 3445443 455666666655444
No 73
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=27.81 E-value=1.4e+02 Score=20.68 Aligned_cols=18 Identities=0% Similarity=-0.029 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHhcc
Q psy7070 90 AVITYCYVFILHVVLAHG 107 (130)
Q Consensus 90 ~ii~~~y~~I~~~l~~~~ 107 (130)
++.++++..+.+++++..
T Consensus 182 ii~i~~~~~~~~~l~~~~ 199 (275)
T PF02118_consen 182 IITIITNIITYRRLRKLS 199 (275)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 334455666666665543
No 74
>PLN02250 lipid phosphate phosphatase
Probab=27.48 E-value=2.3e+02 Score=20.89 Aligned_cols=15 Identities=40% Similarity=0.766 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy7070 82 MFGFILPVAVITYCY 96 (130)
Q Consensus 82 ~~~f~lPl~ii~~~y 96 (130)
+..+++|++++++.|
T Consensus 73 ii~~~iP~~vilv~~ 87 (314)
T PLN02250 73 LIAILLPFAVILVYY 87 (314)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667777766554
No 75
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=27.18 E-value=2e+02 Score=22.05 Aligned_cols=18 Identities=6% Similarity=-0.051 Sum_probs=11.3
Q ss_pred cchhHHHHHHHHHHHHHh
Q psy7070 25 KKKKNRVCIGAWLYVFCL 42 (130)
Q Consensus 25 ~~~~~~~i~~iWi~s~~~ 42 (130)
.....+++...|.+++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~ 46 (471)
T PF04791_consen 29 SWFVKIIVFLGLTLSFSI 46 (471)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 345556666778777663
No 76
>PHA00453 hypothetical protein
Probab=26.29 E-value=21 Score=17.38 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=9.9
Q ss_pred HHHHHHHHhHHhHHhhh
Q psy7070 4 DEEKKKKKKKKKKKKKK 20 (130)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (130)
|||.++-+|.+|+.+-+
T Consensus 17 ~~e~~~G~K~NKp~RDR 33 (41)
T PHA00453 17 DFEATKGRKFNKPLRDR 33 (41)
T ss_pred hhhhccchhccCcchhh
Confidence 55666666666655443
No 77
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=26.13 E-value=44 Score=20.05 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy7070 89 VAVITYCYVFILH 101 (130)
Q Consensus 89 l~ii~~~y~~I~~ 101 (130)
++++.+.--+|+.
T Consensus 27 FiILLIi~~~IW~ 39 (121)
T PF10669_consen 27 FIILLIITKSIWH 39 (121)
T ss_pred HHHHHHHHHHHhh
Confidence 3333433344443
No 78
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=25.79 E-value=40 Score=22.61 Aligned_cols=6 Identities=50% Similarity=0.883 Sum_probs=2.5
Q ss_pred CchHHH
Q psy7070 1 MEEDEE 6 (130)
Q Consensus 1 ~~~~~~ 6 (130)
|.|+++
T Consensus 1 MAee~~ 6 (182)
T PRK08455 1 MAEEQE 6 (182)
T ss_pred CCcchh
Confidence 444443
No 79
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=25.66 E-value=1.2e+02 Score=23.32 Aligned_cols=29 Identities=10% Similarity=0.387 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070 73 NRAFYLYLLMFGFILPVAVITYCYVFILH 101 (130)
Q Consensus 73 ~~~~~~~~~~~~f~lPl~ii~~~y~~I~~ 101 (130)
+.++....++++|++.+++...|.+.+.+
T Consensus 62 NHGlhaagFfvaflvslVL~~l~~f~l~r 90 (429)
T PF12297_consen 62 NHGLHAAGFFVAFLVSLVLTWLCFFLLAR 90 (429)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777777776666665554
No 80
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.46 E-value=2.8e+02 Score=20.94 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070 77 YLYLLMFGFILPVAVITYCYVFILH 101 (130)
Q Consensus 77 ~~~~~~~~f~lPl~ii~~~y~~I~~ 101 (130)
.....++..++|+++++..-..+..
T Consensus 84 ~~~~~~~~~llp~~~~~~v~gi~~~ 108 (363)
T COG1377 84 ALLLEILKALLPFLLVLLVVGLLAN 108 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445577777776655444433
No 81
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=24.89 E-value=1.6e+02 Score=17.40 Aligned_cols=20 Identities=0% Similarity=-0.013 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q psy7070 89 VAVITYCYVFILHVVLAHGK 108 (130)
Q Consensus 89 l~ii~~~y~~I~~~l~~~~~ 108 (130)
+++++++|...+..-+++++
T Consensus 44 Fil~VilwfvCC~kRkrsRr 63 (94)
T PF05393_consen 44 FILLVILWFVCCKKRKRSRR 63 (94)
T ss_pred HHHHHHHHHHHHHHhhhccC
Confidence 34556677655554444433
No 82
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=24.63 E-value=2.2e+02 Score=19.03 Aligned_cols=26 Identities=12% Similarity=-0.019 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070 79 YLLMFGFILPVAVITYCYVFILHVVL 104 (130)
Q Consensus 79 ~~~~~~f~lPl~ii~~~y~~I~~~l~ 104 (130)
+..++.+.+-.++..+.|..++++++
T Consensus 71 ~igi~~~gv~Si~aAllY~~~l~k~~ 96 (173)
T PF11085_consen 71 LIGIVFIGVFSIVAALLYYALLKKFK 96 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333344444555566666666554
No 83
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=24.59 E-value=1.4e+02 Score=17.48 Aligned_cols=20 Identities=10% Similarity=0.059 Sum_probs=9.2
Q ss_pred cccchhHHHHHHHHHHHHHh
Q psy7070 23 KKKKKKNRVCIGAWLYVFCL 42 (130)
Q Consensus 23 ~t~~~~~~~i~~iWi~s~~~ 42 (130)
.+++.-..+.+...++.++.
T Consensus 28 ~sp~W~~p~m~~lmllGL~W 47 (87)
T PF06781_consen 28 PSPRWYAPLMLGLMLLGLLW 47 (87)
T ss_pred CCCccHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 84
>PF06836 DUF1240: Protein of unknown function (DUF1240); InterPro: IPR010665 This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.
Probab=24.44 E-value=1.1e+02 Score=18.23 Aligned_cols=33 Identities=12% Similarity=-0.056 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhhhhhhhcceeecCCcccccc
Q psy7070 32 CIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSW 64 (130)
Q Consensus 32 i~~iWi~s~~~~~P~~~~~~~~~~~~~~~~C~~ 64 (130)
++.+.++++++++|.-+..+......+...|..
T Consensus 46 l~~i~I~~~IlS~~~SfYv~~kL~~~gY~~C~k 78 (95)
T PF06836_consen 46 LAIIAIISFILSFFFSFYVDYKLKSEGYLVCPK 78 (95)
T ss_pred HHHHHHHHHHHHhHhheeEeeEeccCCcEECCc
Confidence 445567778888887654444344566778843
No 85
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=23.63 E-value=2.3e+02 Score=21.06 Aligned_cols=6 Identities=17% Similarity=0.495 Sum_probs=2.4
Q ss_pred Hhhhhh
Q psy7070 41 CLTLPP 46 (130)
Q Consensus 41 ~~~~P~ 46 (130)
..++|+
T Consensus 203 a~a~~~ 208 (336)
T PF05055_consen 203 AHAVPA 208 (336)
T ss_pred HHhhhH
Confidence 333444
No 86
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=23.47 E-value=1.7e+02 Score=17.21 Aligned_cols=20 Identities=0% Similarity=-0.112 Sum_probs=8.9
Q ss_pred ccchhHHHHHHHHHHHHHhh
Q psy7070 24 KKKKKNRVCIGAWLYVFCLT 43 (130)
Q Consensus 24 t~~~~~~~i~~iWi~s~~~~ 43 (130)
+++.-..+.+..+++.++..
T Consensus 30 sP~W~~~~m~~lm~~Gl~Wl 49 (87)
T PRK02251 30 NPRWFVPLFVALMIIGLIWL 49 (87)
T ss_pred CCchHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 87
>PF15069 FAM163: FAM163 family
Probab=23.42 E-value=1.4e+02 Score=19.35 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7070 85 FILPVAVITYCYVFILHVV 103 (130)
Q Consensus 85 f~lPl~ii~~~y~~I~~~l 103 (130)
+++=.+|.+.||.++...-
T Consensus 16 VILLcIIaVLCYCRLQYYC 34 (143)
T PF15069_consen 16 VILLCIIAVLCYCRLQYYC 34 (143)
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 4444566788999977643
No 88
>PLN00085 photosystem II reaction center protein M (PsbM); Provisional
Probab=21.69 E-value=1.1e+02 Score=19.07 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7070 80 LLMFGFILPVAVITYCYVFI 99 (130)
Q Consensus 80 ~~~~~f~lPl~ii~~~y~~I 99 (130)
...++.++|...+++.|...
T Consensus 87 AtaLFIlIPTaFLLILYVkT 106 (149)
T PLN00085 87 ATALFIIIPTSFLIILYVKS 106 (149)
T ss_pred HHHHHHHHHHHHHHHheeee
Confidence 33445678888888888754
No 89
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=21.56 E-value=2.8e+02 Score=19.36 Aligned_cols=25 Identities=4% Similarity=0.151 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070 78 LYLLMFGFILPVAVITYCYVFILHV 102 (130)
Q Consensus 78 ~~~~~~~f~lPl~ii~~~y~~I~~~ 102 (130)
+..+++.||+-++++.++|....+.
T Consensus 38 iG~fLlWyfviilvLm~~~ras~Wm 62 (243)
T PF15468_consen 38 IGSFLLWYFVIILVLMFFSRASVWM 62 (243)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555566665555443
No 90
>PHA02650 hypothetical protein; Provisional
Probab=21.41 E-value=1.8e+02 Score=16.76 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7070 85 FILPVAVITYCYVFILH 101 (130)
Q Consensus 85 f~lPl~ii~~~y~~I~~ 101 (130)
+++-+++..+.|.+..+
T Consensus 58 ~v~i~~l~~flYLK~~~ 74 (81)
T PHA02650 58 SLIIVALFSFFVFKGYT 74 (81)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33334555666766654
No 91
>PLN02715 lipid phosphate phosphatase
Probab=21.20 E-value=3.5e+02 Score=20.07 Aligned_cols=15 Identities=20% Similarity=0.740 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy7070 82 MFGFILPVAVITYCY 96 (130)
Q Consensus 82 ~~~f~lPl~ii~~~y 96 (130)
++.+++|+++++..|
T Consensus 98 vi~~liPii~i~~~~ 112 (327)
T PLN02715 98 VYAVLLPIILFVCFY 112 (327)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667765554433
No 92
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=21.07 E-value=1.5e+02 Score=21.96 Aligned_cols=29 Identities=7% Similarity=0.268 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7070 74 RAFYLYLLMFGFILPVAVITYCYVFILHV 102 (130)
Q Consensus 74 ~~~~~~~~~~~f~lPl~ii~~~y~~I~~~ 102 (130)
....+..+.+.|++|.++.+.||.--+..
T Consensus 225 lm~RiGiFsvly~vp~~~~i~c~~YE~~~ 253 (328)
T PF01534_consen 225 LMIRIGIFSVLYLVPALIVIACHFYEYSN 253 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567778888999999999998855543
No 93
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=20.67 E-value=2.3e+02 Score=17.65 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHH
Q psy7070 81 LMFGFILPVAVIT 93 (130)
Q Consensus 81 ~~~~f~lPl~ii~ 93 (130)
-..++++|+.+|+
T Consensus 102 RaaGilLP~Yim~ 114 (118)
T PF12428_consen 102 RAAGILLPCYIMA 114 (118)
T ss_pred HHHHHHHHHHHHH
Confidence 3467889888775
No 94
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=20.65 E-value=1.2e+02 Score=18.12 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh
Q psy7070 29 NRVCIGAWLYVFCLTLPPLFGW 50 (130)
Q Consensus 29 ~~~i~~iWi~s~~~~~P~~~~~ 50 (130)
.++++++=+++++.++|.+++-
T Consensus 9 yllil~vl~~~~lyALPnlyge 30 (101)
T PF13721_consen 9 YLLILVVLLLGALYALPNLYGE 30 (101)
T ss_pred HHHHHHHHHHHHHHHhhhccCC
Confidence 3445555667788888988764
No 95
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=20.18 E-value=3.2e+02 Score=20.00 Aligned_cols=13 Identities=15% Similarity=0.503 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q psy7070 85 FILPVAVITYCYV 97 (130)
Q Consensus 85 f~lPl~ii~~~y~ 97 (130)
.++-+++|++.|.
T Consensus 265 IliIVLIMvIIYL 277 (299)
T PF02009_consen 265 ILIIVLIMVIIYL 277 (299)
T ss_pred HHHHHHHHHHHHH
Confidence 3343455555554
Done!