RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7070
(130 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 73.9 bits (182), Expect = 5e-17
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 20 KKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCY-IPEGFMTSCSWDYMSRTMSNRAFYL 78
++ + ++ + + W+ L+LPPL + EG +T+C D+ + R++ L
Sbjct: 87 RRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTVEEGNVTTCLIDFPEE-STKRSYTL 145
Query: 79 YLLMFGFILPVAVITYCYVFILHVVLAHGKEM 110
+ GF+LP+ VI CY IL + +
Sbjct: 146 LSTLLGFVLPLLVILVCYTLILRTLRKRARSG 177
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 43.8 bits (104), Expect = 5e-06
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+K+K+K+K K KK+ + K K R
Sbjct: 401 EKKEKEKEKPKVKKRHRDTKNIGKRR 426
Score = 43.0 bits (102), Expect = 1e-05
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
EKK+K+K+K K KK+ + K R
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTKNIGKR 425
Score = 42.6 bits (101), Expect = 2e-05
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
+ +KK+K+K+K K KK+ + KN
Sbjct: 399 RAEKKEKEKEKPKVKKRHRDTKN 421
Score = 41.5 bits (98), Expect = 3e-05
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+ E++K+K K KK+ + K K++K
Sbjct: 401 EKKEKEKEKPKVKKRHRDTKNIGKRRK 427
Score = 40.7 bits (96), Expect = 6e-05
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E +EK+K+K K KK+ + K K++
Sbjct: 400 AEKKEKEKEKPKVKKRHRDTKNIGKRR 426
Score = 40.3 bits (95), Expect = 8e-05
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
K+ +KK+K+K+K K KK+ + +
Sbjct: 398 KRAEKKEKEKEKPKVKKRHRDTKNI 422
Score = 40.3 bits (95), Expect = 1e-04
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
++++EK+K K KK+ + K K++K +
Sbjct: 402 KKEKEKEKPKVKKRHRDTKNIGKRRKPS 429
Score = 39.9 bits (94), Expect = 1e-04
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
K K+ +KK+K+K+K K KK++R
Sbjct: 394 KVLAKRAEKKEKEKEKPKVKKRHR 417
Score = 39.5 bits (93), Expect = 1e-04
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNRVCIG 34
K+ +KK+K+K+K K KK+ ++ IG
Sbjct: 395 VLAKRAEKKEKEKEKPKVKKRHRDTKNIG 423
Score = 39.5 bits (93), Expect = 1e-04
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E E++K K KK+ + K K++K
Sbjct: 404 EKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 39.5 bits (93), Expect = 1e-04
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+++ K KK K+ +KK+K+K+K +V
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKEKEKPKV 412
Score = 39.2 bits (92), Expect = 2e-04
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
KK K+ +KK+K+K+K K K R
Sbjct: 392 SKKVLAKRAEKKEKEKEKPKVKKR 415
Score = 39.2 bits (92), Expect = 2e-04
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
+++K+K+K K KK+ + K K+ +
Sbjct: 402 KKEKEKEKPKVKKRHRDTKNIGKRRK 427
Score = 38.8 bits (91), Expect = 3e-04
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E+++EK K KK+ + K K++K
Sbjct: 404 EKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 37.2 bits (87), Expect = 0.001
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E + K KK K+ +KK+K+K+K
Sbjct: 385 EKKTGKPSKKVLAKRAEKKEKEKEKPK 411
Score = 34.9 bits (81), Expect = 0.006
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+E E+ K KK+ + K K++K +
Sbjct: 404 EKEKEKPKVKKRHRDTKNIGKRRKPSGTS 432
Score = 33.4 bits (77), Expect = 0.024
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
+KK K KK K+ +KK+K
Sbjct: 382 APSEKKTGKPSKKVLAKRAEKKEK 405
Score = 33.0 bits (76), Expect = 0.032
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+++ K KK+ + K K++K
Sbjct: 406 EKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 29.5 bits (67), Expect = 0.42
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 9 KKKKKKKKKKKKKKKKKKKKNR 30
+KK K KK K+ +KK +
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEK 405
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 41.5 bits (98), Expect = 3e-05
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
EEKK +K+KKKKK+KKK KK+KKK R
Sbjct: 388 EEKKPQKRKKKKKRKKKGKKRKKKGR 413
Score = 41.1 bits (97), Expect = 4e-05
Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ +E+K +K+KKKKK+KKK KK+KKK +
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 39.6 bits (93), Expect = 2e-04
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
KKK+++KK +K+KKKKK+KKK +
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKK 407
Score = 39.2 bits (92), Expect = 2e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
KK+++KK +K+KKKKK+KKK K R
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKKR 408
Score = 37.6 bits (88), Expect = 8e-04
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
KKK+++KK +K+KKKKK+KKK +
Sbjct: 383 PKKKREEKKPQKRKKKKKRKKKGK 406
Score = 34.6 bits (80), Expect = 0.008
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
K KKK+++KK +K+KKKKK+K +
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKK 404
Score = 34.6 bits (80), Expect = 0.009
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE +EK K KKK+++KK +K+KKKK R
Sbjct: 373 EEIKEKYPKPPKKKREEKKPQKRKKKKKR 401
Score = 27.2 bits (61), Expect = 2.6
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 3 EDEEKK----KKKKKKKKKKKKKKKKKKKKNR 30
E+ K+ K+K K KKK+++KK +K+ +
Sbjct: 366 EELNKRIEEIKEKYPKPPKKKREEKKPQKRKK 397
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 40.0 bits (94), Expect = 4e-05
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE KK+ K++KKK+KKKKKKK KK N+
Sbjct: 79 DEEKTAKKRAKRQKKKQKKKKKKKAKKGNK 108
Score = 40.0 bits (94), Expect = 4e-05
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+DEEK KK+ K++KKK+KKKKKKK
Sbjct: 76 KRKDEEKTAKKRAKRQKKKQKKKKKKKAK 104
Score = 32.7 bits (75), Expect = 0.022
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE + K ++K KK+ K++KKK+KKKK +
Sbjct: 73 EEKKRKDEEKTAKKRAKRQKKKQKKKKKK 101
Score = 32.3 bits (74), Expect = 0.035
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKN 29
+KKK+KKKKKKK KK KK++K+
Sbjct: 91 QKKKQKKKKKKKAKKGNKKEEKEG 114
Score = 30.8 bits (70), Expect = 0.091
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 13/41 (31%)
Query: 2 EEDEEKKKK-------------KKKKKKKKKKKKKKKKKKN 29
EDEE ++K KK+ K++KKK+KKKKKKK
Sbjct: 63 TEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKA 103
Score = 29.2 bits (66), Expect = 0.38
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
++KK+KKKKKKK KK KK++K+ ++
Sbjct: 91 QKKKQKKKKKKKAKKGNKKEEKEGSK 116
Score = 27.7 bits (62), Expect = 1.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNRV 31
+K+KKKKKKK KK KK++K+
Sbjct: 93 KKQKKKKKKKAKKGNKKEEKEGSKSS 118
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 40.2 bits (95), Expect = 5e-05
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAWLYV 39
+++ E K +K +KK +K K K +KKK + L+V
Sbjct: 63 LDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRLFV 101
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 39.0 bits (91), Expect = 2e-04
Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Query: 2 EEDEEKKKKKKKK---KKKKKKKKKKKKKKNR 30
+ EKK KKKK K++KKKKK+KKKKK R
Sbjct: 137 LKGHEKKHKKKKHEDDKERKKKKKEKKKKKKR 168
Score = 31.3 bits (71), Expect = 0.071
Identities = 14/20 (70%), Positives = 19/20 (95%)
Query: 2 EEDEEKKKKKKKKKKKKKKK 21
E+D+E+KKKKK+KKKKKK+
Sbjct: 150 EDDKERKKKKKEKKKKKKRH 169
Score = 29.8 bits (67), Expect = 0.24
Identities = 13/20 (65%), Positives = 19/20 (95%)
Query: 3 EDEEKKKKKKKKKKKKKKKK 22
ED++++KKKKK+KKKKKK+
Sbjct: 150 EDDKERKKKKKEKKKKKKRH 169
Score = 29.8 bits (67), Expect = 0.27
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 6 EKKKKKKKKKKKKKKKKKKK 25
E K++KKKKK+KKKKKK+
Sbjct: 150 EDDKERKKKKKEKKKKKKRH 169
Score = 29.8 bits (67), Expect = 0.30
Identities = 12/20 (60%), Positives = 19/20 (95%)
Query: 4 DEEKKKKKKKKKKKKKKKKK 23
+++K++KKKKK+KKKKKK+
Sbjct: 150 EDDKERKKKKKEKKKKKKRH 169
Score = 29.8 bits (67), Expect = 0.30
Identities = 13/20 (65%), Positives = 18/20 (90%)
Query: 5 EEKKKKKKKKKKKKKKKKKK 24
E+ K++KKKKK+KKKKKK+
Sbjct: 150 EDDKERKKKKKEKKKKKKRH 169
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 38.6 bits (90), Expect = 4e-04
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKK 26
+ E K KK KKKKKKKKK++K
Sbjct: 267 YDVSEMVKFKKPKKKKKKKKKRRKDL 292
Score = 38.2 bits (89), Expect = 5e-04
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKN 29
D + K KK KKKKKKKKK++K +
Sbjct: 268 DVSEMVKFKKPKKKKKKKKKRRKDLD 293
Score = 37.8 bits (88), Expect = 6e-04
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ E K KK KKKKKKKKK++K
Sbjct: 268 DVSEMVKFKKPKKKKKKKKKRRKDLDE 294
Score = 34.7 bits (80), Expect = 0.007
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
D + K KK KKKKKKKKK++ +
Sbjct: 265 DYYDVSEMVKFKKPKKKKKKKKKRRKDL 292
Score = 28.2 bits (63), Expect = 1.5
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 28/58 (48%)
Query: 1 MEEDEEKKKKKKKKKK----------------------------KKKKKKKKKKKKNR 30
+++ EKK+++ KKK KK KKKKKKKKK R
Sbjct: 232 TDDEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRR 289
Score = 27.4 bits (61), Expect = 2.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
KK++KKK+ ++KK +K+K R
Sbjct: 99 KKRQKKKEAERKKALLLDEKEKER 122
Score = 27.4 bits (61), Expect = 2.2
Identities = 8/32 (25%), Positives = 22/32 (68%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIG 34
++E + K+K+++ ++K K ++K+++N G
Sbjct: 46 QEEAEAKRKREELREKIAKAREKRERNSKLGG 77
Score = 26.3 bits (58), Expect = 6.0
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EE E K+K+++ ++K K ++K+++
Sbjct: 47 EEAEAKRKREELREKIAKAREKRERNS 73
Score = 25.9 bits (57), Expect = 7.7
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ EE ++K K ++K+++ K K
Sbjct: 53 RKREELREKIAKAREKRERNSKLGGIK 79
Score = 25.9 bits (57), Expect = 8.5
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNR 30
+K KK++KKK+ ++KK +K +
Sbjct: 96 KKSKKRQKKKEAERKKALLLDEKEK 120
Score = 25.9 bits (57), Expect = 8.5
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
K++KKK+ ++KK +K+K+
Sbjct: 100 KRQKKKEAERKKALLLDEKEKERAA 124
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 37.8 bits (88), Expect = 4e-04
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
EE+E+K+KKKKK+ KK+KK+KK KK+K
Sbjct: 150 EEEEKKEKKKKKEVKKEKKEKKDKKEKM 177
Score = 36.2 bits (84), Expect = 0.002
Identities = 18/28 (64%), Positives = 24/28 (85%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E +EE+KK+KKKKK+ KK+KK+KK KK
Sbjct: 148 EVEEEEKKEKKKKKEVKKEKKEKKDKKE 175
Score = 35.1 bits (81), Expect = 0.004
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE +EKKKKK+ KK+KK+KK KK+K
Sbjct: 152 EEKKEKKKKKEVKKEKKEKKDKKEKMVEP 180
Score = 35.1 bits (81), Expect = 0.005
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E +EKK+KK KK+K + K KKKKK +
Sbjct: 161 KEVKKEKKEKKDKKEKMVEPKGSKKKKKKK 190
Score = 34.3 bits (79), Expect = 0.008
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E EE++KK+KKKKK+ KK+KK+KK K
Sbjct: 147 AEVEEEEKKEKKKKKEVKKEKKEKKDK 173
Score = 32.0 bits (73), Expect = 0.045
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E + E+++KK+KKKKK+ KK+KK+KK
Sbjct: 145 KEAEVEEEEKKEKKKKKEVKKEKKEKKD 172
Score = 32.0 bits (73), Expect = 0.048
Identities = 15/29 (51%), Positives = 26/29 (89%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+E E ++++KK+KKKKK+ KK+KK+KK++
Sbjct: 145 KEAEVEEEEKKEKKKKKEVKKEKKEKKDK 173
Score = 31.6 bits (72), Expect = 0.064
Identities = 14/28 (50%), Positives = 25/28 (89%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+E++ E ++++KK+KKKKK+ KK+KK+K
Sbjct: 143 VEKEAEVEEEEKKEKKKKKEVKKEKKEK 170
Score = 28.5 bits (64), Expect = 0.92
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E E + ++++KK+KKKKK+ KK+KK+
Sbjct: 142 KVEKEAEVEEEEKKEKKKKKEVKKEKKE 169
Score = 28.1 bits (63), Expect = 1.1
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E E K +K+ + ++++KK+KKKKK
Sbjct: 135 SEKETTAKVEKEAEVEEEEKKEKKKKK 161
Score = 27.4 bits (61), Expect = 1.9
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++E K +K+ + ++++KK+KKKK
Sbjct: 134 TSEKETTAKVEKEAEVEEEEKKEKKKK 160
Score = 27.4 bits (61), Expect = 1.9
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E E++ K +K+ + ++++KK+KKK
Sbjct: 133 ETSEKETTAKVEKEAEVEEEEKKEKKKK 160
Score = 27.4 bits (61), Expect = 2.0
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
EK+ + ++++KK+KKKKK+ KK+ +
Sbjct: 141 AKVEKEAEVEEEEKKEKKKKKEVKKEKKE 169
Score = 27.0 bits (60), Expect = 2.4
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E++ K +K+ + ++++KK+KKKKK+
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKE 162
Score = 27.0 bits (60), Expect = 3.1
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E + +K+ + ++++KK+KKKKK+ K
Sbjct: 138 ETTAKVEKEAEVEEEEKKEKKKKKEVK 164
Score = 26.6 bits (59), Expect = 4.0
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+E K +K+ + ++++KK+KKKKK+ +
Sbjct: 137 KETTAKVEKEAEVEEEEKKEKKKKKEVKK 165
Score = 26.2 bits (58), Expect = 5.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E EK+ K +K+ + ++++KK+KK
Sbjct: 132 SETSEKETTAKVEKEAEVEEEEKKEKKK 159
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
Provisional.
Length = 330
Score = 37.5 bits (88), Expect = 8e-04
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAWLYV 39
+E K K +KKK+K++ K K K++ L+V
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKPR----LFV 94
Score = 37.1 bits (87), Expect = 0.001
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKK-KKKKKKNRV 31
+++ E K K +KKK+K++ K K K K R+
Sbjct: 61 LDKKELKAWHKAQKKKEKQEAKAAKAKSKPRL 92
Score = 31.7 bits (73), Expect = 0.075
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+KK+ K K +KKK+K++ K
Sbjct: 57 KAALLDKKELKAWHKAQKKKEKQEAKAAK 85
Score = 26.3 bits (59), Expect = 5.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
M+E+ + KK+ K K +KKK+K+
Sbjct: 52 MKEELKAALLDKKELKAWHKAQKKKEKQEA 81
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 35.8 bits (83), Expect = 8e-04
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E D KKKKKKKKKK + K KK
Sbjct: 18 TEADLVKKKKKKKKKKAEDTAATAKAKK 45
Score = 32.3 bits (74), Expect = 0.016
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKN 29
E KKKKKKKKKK + K
Sbjct: 18 TEADLVKKKKKKKKKKAEDTAATAKA 43
Score = 25.8 bits (57), Expect = 3.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
K + KKKKKKKKKK +
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAA 39
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 36.0 bits (83), Expect = 0.001
Identities = 17/27 (62%), Positives = 17/27 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E EK KKKKKK KK KK KK KK
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 32.5 bits (74), Expect = 0.018
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKN 29
K KKKKKK KK KK KK KK+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 32.2 bits (73), Expect = 0.032
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
E +K KKKKKK KK KK KK +
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKK 119
Score = 28.7 bits (64), Expect = 0.55
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+D + +K KKKKKK KK KK KK+
Sbjct: 90 DDHPPEPTEKPKKKKKKSKKTKKPKKS 116
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 37.0 bits (85), Expect = 0.002
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAWLYVFCLTLPP 46
E+K KK KKK+KK+K+K++ K KK V L + P
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPA 237
Score = 35.4 bits (81), Expect = 0.004
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E + KK KKK+KK+K+K++ K KKK+
Sbjct: 194 AVEKKSKKPKKKEKKEKEKERDKDKKKE 221
Score = 35.0 bits (80), Expect = 0.007
Identities = 10/27 (37%), Positives = 23/27 (85%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+EE++ +++ +K K++KKK++K+K+ R
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGR 111
Score = 34.7 bits (79), Expect = 0.007
Identities = 10/30 (33%), Positives = 23/30 (76%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+EE+ +++ +K K++KKK++K+K+ + R
Sbjct: 84 LEEERRHRQRLEKDKREKKKREKEKRGRRR 113
Score = 33.5 bits (76), Expect = 0.020
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+ +K KKK+KK+K+K++ K KKK+
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEG 224
Score = 33.1 bits (75), Expect = 0.032
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAWL 37
++ ++ KKK+KK+K+K++ K KKK+ + + L
Sbjct: 197 KKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLAL 232
Score = 31.2 bits (70), Expect = 0.13
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
Query: 1 MEEDEEKKK----KKKKKKKKKKKKKKKKKKKNRVC 32
E EE KK KKKK++K+K++KKKKKK + C
Sbjct: 268 DAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRC 303
Score = 30.8 bits (69), Expect = 0.16
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+ + +KK KK KKK+KK+K+K++++
Sbjct: 188 EKGDVPAVEKKSKKPKKKEKKEKEKERDK 216
Score = 30.8 bits (69), Expect = 0.19
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 6 EKKKKKKKKKKKKKKKKKKKK 26
EK K++KKK++K+K+ +++
Sbjct: 95 EKDKREKKKREKEKRGRRRHH 115
Score = 28.9 bits (64), Expect = 0.76
Identities = 7/24 (29%), Positives = 18/24 (75%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKK 25
+ E+ K++KKK++K+K+ +++
Sbjct: 92 QRLEKDKREKKKREKEKRGRRRHH 115
Score = 28.9 bits (64), Expect = 0.90
Identities = 7/21 (33%), Positives = 17/21 (80%)
Query: 7 KKKKKKKKKKKKKKKKKKKKK 27
+K K++KKK++K+K+ +++
Sbjct: 95 EKDKREKKKREKEKRGRRRHH 115
Score = 27.0 bits (59), Expect = 4.1
Identities = 7/22 (31%), Positives = 18/22 (81%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKK 22
+E+D+ +KKK++K+K+ +++
Sbjct: 94 LEKDKREKKKREKEKRGRRRHH 115
Score = 26.6 bits (58), Expect = 4.4
Identities = 7/30 (23%), Positives = 21/30 (70%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
M + K +++++ +++ +K K++KKK+ +
Sbjct: 77 MSDQYVKLEEERRHRQRLEKDKREKKKREK 106
Score = 26.2 bits (57), Expect = 5.7
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
++KK++K+K++KKKKKK + +
Sbjct: 281 KKKKQRKEKEEKKKKKKHHHHRCHHS 306
Score = 25.8 bits (56), Expect = 7.7
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+D E ++ KK K KKKK++K+K++K +
Sbjct: 267 KDAEAEETKKSPKHKKKKQRKEKEEKKK 294
Score = 25.8 bits (56), Expect = 9.5
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+E ++ + ++ KK K KKKK++K+K+ +
Sbjct: 264 DEPKDAEAEETKKSPKHKKKKQRKEKEEK 292
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 36.7 bits (85), Expect = 0.002
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+ +K K K KK KK R
Sbjct: 184 AAKLSSTASSGDEKSPKSKAAPKKAGKKMRK 214
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation
factor 3 (eIF3). In yeast it is called Hcr1. The
Saccharomyces cerevisiae protein eIF3j (HCR1) has been
shown to be required for processing of 20S pre-rRNA and
binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 36.2 bits (84), Expect = 0.002
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
EEDEEK+++K K K K KK K K
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIE 67
Score = 35.4 bits (82), Expect = 0.004
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EE++E+K+++K K K K KK K K
Sbjct: 39 EEEDEEKEEEKAKVAAKAKAKKALKAK 65
Score = 33.9 bits (78), Expect = 0.011
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+E+E+++K+++K K K K KK K
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKA 64
Score = 33.5 bits (77), Expect = 0.018
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E++E++++K K K K KK K K + +
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEK 69
Score = 32.7 bits (75), Expect = 0.033
Identities = 11/26 (42%), Positives = 11/26 (42%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
EK K KKKK K K K N
Sbjct: 197 AEKAAKGGKKKKGKAKAKLNVGGAND 222
Score = 32.3 bits (74), Expect = 0.037
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKN 29
EK K +K K KKKK K K K N
Sbjct: 193 EKLKAEKAAKGGKKKKGKAKAKLN 216
Score = 31.2 bits (71), Expect = 0.12
Identities = 9/27 (33%), Positives = 9/27 (33%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E K KKKK K K K
Sbjct: 197 AEKAAKGGKKKKGKAKAKLNVGGANDD 223
Score = 30.4 bits (69), Expect = 0.20
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKK 25
++ K +K K KKKK K K K
Sbjct: 193 EKLKAEKAAKGGKKKKGKAKAK 214
Score = 30.4 bits (69), Expect = 0.21
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKNRV 31
K K +K K KKKK K K K V
Sbjct: 194 KLKAEKAAKGGKKKKGKAKAKLNV 217
Score = 30.0 bits (68), Expect = 0.29
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNR 30
KK K K ++K+K K++K++K R
Sbjct: 58 AKKALKAKIEEKEKAKREKEEKGLR 82
Score = 29.2 bits (66), Expect = 0.50
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
++ ++ K KKKK K K K +
Sbjct: 195 LKAEKAAKGGKKKKGKAKAKLNVGGANDD 223
Score = 28.9 bits (65), Expect = 0.63
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
+K K +K K KKKK K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAK 214
Score = 28.1 bits (63), Expect = 1.2
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ E + +K K KKKK K K K
Sbjct: 191 INEKLKAEKAAKGGKKKKGKAKAKLNVGG 219
Score = 28.1 bits (63), Expect = 1.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKNRV 31
+K K +K K KKKK K K ++
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKL 215
Score = 28.1 bits (63), Expect = 1.3
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E+ + KKKK K K K +
Sbjct: 198 EKAAKGGKKKKGKAKAKLNVGGANDDDD 225
Score = 27.7 bits (62), Expect = 1.9
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ +E++ ++K+++K K K K KK
Sbjct: 34 KDSWDEEEDEEKEEEKAKVAAKAKAKKA 61
Score = 27.3 bits (61), Expect = 2.6
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ K K ++K+K K++K++K ++
Sbjct: 58 AKKALKAKIEEKEKAKREKEEKGLRE 83
Score = 26.2 bits (58), Expect = 5.7
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
K K ++K+K K++K++K ++
Sbjct: 63 KAKIEEKEKAKREKEEKGLRELE 85
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 35.8 bits (83), Expect = 0.002
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++E ++KK+KKKKKKKKKKK KK K
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTSKKAAK 132
Score = 35.4 bits (82), Expect = 0.002
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E+ ++KK+KKKKKKKKKKK KK KK
Sbjct: 107 EKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 34.3 bits (79), Expect = 0.005
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ +++KKKKKKKKKKK KK KKKK
Sbjct: 109 AKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 33.1 bits (76), Expect = 0.015
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
K+K K+KK+KKKKKKKKKKK ++
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTSK 128
Score = 32.7 bits (75), Expect = 0.022
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKN 29
+ K+K K+KK+KKKKKKKKKKK
Sbjct: 103 QVLKEKAKQKKQKKKKKKKKKKKT 126
Score = 31.6 bits (72), Expect = 0.051
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKK 25
++ ++KKKKKKKKK KK KKKK
Sbjct: 111 QKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 31.2 bits (71), Expect = 0.065
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+EE + K+ K+K K+KK+KKKKKKKK +
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKK 125
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 35.3 bits (82), Expect = 0.002
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E +K+K+ +K ++KK K+++K+K +
Sbjct: 102 RTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 31.1 bits (71), Expect = 0.073
Identities = 8/29 (27%), Positives = 21/29 (72%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
++ +K+K+ +K ++KK K+++K+K+
Sbjct: 102 RTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 29.9 bits (68), Expect = 0.19
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
E K++ +K+K+ +K ++KK K++
Sbjct: 101 ERTKERAEKEKRTRKNREKKFKRR 124
Score = 29.9 bits (68), Expect = 0.21
Identities = 8/29 (27%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E +++ +K+K+ +K ++KK K+++K +
Sbjct: 100 RERTKERAEKEKRTRKNREKKFKRRQKEK 128
Score = 28.8 bits (65), Expect = 0.56
Identities = 6/23 (26%), Positives = 17/23 (73%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKNR 30
+ ++++ K++ +K+K+ +KNR
Sbjct: 95 ALRLRRERTKERAEKEKRTRKNR 117
Score = 27.2 bits (61), Expect = 1.5
Identities = 6/23 (26%), Positives = 18/23 (78%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKK 28
++++ K++ +K+K+ +K ++KK
Sbjct: 98 LRRERTKERAEKEKRTRKNREKK 120
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 35.8 bits (83), Expect = 0.002
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
EE +KKK+ K K K+ KKKKKK
Sbjct: 81 EERLKKKKRVKTKAYKEPTKKKKKKDPTAA 110
Score = 35.4 bits (82), Expect = 0.003
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ EE+ KKKK+ K K K+ KKKKK
Sbjct: 79 QREERLKKKKRVKTKAYKEPTKKKKK 104
Score = 35.0 bits (81), Expect = 0.004
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E+ KKKK+ K K K+ KKKKKK
Sbjct: 80 REERLKKKKRVKTKAYKEPTKKKKKKDP 107
Score = 35.0 bits (81), Expect = 0.005
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ +E KKKK+ K K K+ KKKKKK
Sbjct: 79 QREERLKKKKRVKTKAYKEPTKKKKKK 105
Score = 33.5 bits (77), Expect = 0.016
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
EE+ EK+ +++++ KKKK+ K K K+
Sbjct: 71 EEEGEKELQREERLKKKKRVKTKAYKEPTK 100
Score = 33.1 bits (76), Expect = 0.019
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKK 25
++E E ++KK + K +K+K+KKK+K
Sbjct: 157 LKEREIRRKKIQAKARKRKEKKKEK 181
Score = 32.7 bits (75), Expect = 0.032
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E E++ KKKK+ K K K+ KKKK
Sbjct: 77 ELQREERLKKKKRVKTKAYKEPTKKKK 103
Score = 32.0 bits (73), Expect = 0.056
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
+++EE +K+ +++++ KKKK+ K K
Sbjct: 69 DDEEEGEKELQREERLKKKKRVKTKA 94
Score = 31.2 bits (71), Expect = 0.11
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+DEE+ +K+ +++++ KKKK+ K K
Sbjct: 68 SDDEEEGEKELQREERLKKKKRVKTKA 94
Score = 30.8 bits (70), Expect = 0.12
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+E+E +K+ +++++ KKKK+ K K K
Sbjct: 70 DEEEGEKELQREERLKKKKRVKTKAYK 96
Score = 30.0 bits (68), Expect = 0.25
Identities = 10/24 (41%), Positives = 20/24 (83%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
+E++ ++KK + K +K+K+KKK+K
Sbjct: 158 KEREIRRKKIQAKARKRKEKKKEK 181
Score = 29.7 bits (67), Expect = 0.37
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKK 26
++ E ++KK + K +K+K+KKK+K
Sbjct: 158 KEREIRRKKIQAKARKRKEKKKEK 181
Score = 27.7 bits (62), Expect = 1.4
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E D+E++ +K+ +++++ KKKK+ K K
Sbjct: 66 PESDDEEEGEKELQREERLKKKKRVKTK 93
Score = 27.3 bits (61), Expect = 2.3
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E ++++ ++KK + K +K+K+KKK+
Sbjct: 153 THERLKEREIRRKKIQAKARKRKEKKKE 180
Score = 27.0 bits (60), Expect = 3.1
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
KKKKK K K + KK
Sbjct: 101 KKKKKDPTAAKSPKAAAPRPKKKS 124
Score = 26.6 bits (59), Expect = 3.5
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E E+ K+++ ++KK + K +K+K+K +
Sbjct: 151 EATHERLKEREIRRKKIQAKARKRKEKKK 179
Score = 26.2 bits (58), Expect = 5.3
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
K+++ ++KK + K +K+K+KKK +
Sbjct: 158 KEREIRRKKIQAKARKRKEKKKEKE 182
Score = 25.4 bits (56), Expect = 8.8
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 6 EKKKKKKKKK-----KKKKKKKKKKKKKNR 30
E KKKKKK K + KKK R
Sbjct: 97 EPTKKKKKKDPTAAKSPKAAAPRPKKKSER 126
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 35.7 bits (82), Expect = 0.003
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ DEEK KKKKKK K KKK KK R
Sbjct: 235 DGDEEKSKKKKKKLAKNKKKLDDDKKGKR 263
Score = 33.8 bits (77), Expect = 0.015
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E+ +E+K KKKKKK K KKK KK +
Sbjct: 234 EDGDEEKSKKKKKKLAKNKKKLDDDKKGKR 263
Score = 33.0 bits (75), Expect = 0.032
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
ED +++K KKKKKK K KKK K
Sbjct: 233 GEDGDEEKSKKKKKKLAKNKKKLDDDKKG 261
Score = 32.2 bits (73), Expect = 0.051
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E +EEK +++ KK KK KK K KKN
Sbjct: 322 ESEEEKNEEEGGLSKKGKKLKKLKGKKNG 350
Score = 30.7 bits (69), Expect = 0.17
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKK 26
EE KK KK KK K KK K
Sbjct: 330 EEGGLSKKGKKLKKLKGKKNGLDKD 354
Score = 29.2 bits (65), Expect = 0.56
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EE E++ KK KK KK K KK
Sbjct: 325 EEKNEEEGGLSKKGKKLKKLKGKKNGL 351
Score = 29.2 bits (65), Expect = 0.57
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE EE+K +++ KK KK KK K K
Sbjct: 321 EESEEEKNEEEGGLSKKGKKLKKLKGKKN 349
Score = 29.2 bits (65), Expect = 0.58
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKK 26
++ E ++K KKKKKK K KKK
Sbjct: 229 SDKGGEDGDEEKSKKKKKKLAKNKKK 254
Score = 29.2 bits (65), Expect = 0.67
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E++EE+ KK KK KK K KK
Sbjct: 326 EKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Score = 28.4 bits (63), Expect = 1.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
EE++ +++ KK KK KK K KK
Sbjct: 324 EEEKNEEEGGLSKKGKKLKKLKGKKNGL 351
Score = 28.0 bits (62), Expect = 1.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E+ E++K +++ KK KK KK K
Sbjct: 320 SEESEEEKNEEEGGLSKKGKKLKKLKGK 347
Score = 27.6 bits (61), Expect = 2.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E D+ + ++K KKKKKK K KKK
Sbjct: 228 ESDKGGEDGDEEKSKKKKKKLAKNKKKL 255
Score = 26.1 bits (57), Expect = 6.4
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ +E +++K +++ KK KK KK K +
Sbjct: 319 DSEESEEEKNEEEGGLSKKGKKLKKLKGK 347
Score = 26.1 bits (57), Expect = 7.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
ED E+ +++K +++ KK KK KK
Sbjct: 318 EDSEESEEEKNEEEGGLSKKGKKLKKL 344
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 34.9 bits (81), Expect = 0.005
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 9 KKKKKKKKKKKKKKKKKKKKNRV 31
KKK KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGAD 36
Score = 33.7 bits (78), Expect = 0.011
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
KKK KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
Score = 33.0 bits (76), Expect = 0.020
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKK 27
+KK KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
Score = 33.0 bits (76), Expect = 0.025
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKK 26
D++K KK KK+K+K++K+ +K
Sbjct: 13 DKKKAKKAKKEKRKQRKQARKGA 35
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region.
This domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 33.3 bits (77), Expect = 0.007
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKK-----KKNRV 31
D +KKK+KK+ K + K+ KK +K RV
Sbjct: 57 ADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARV 90
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 34.3 bits (79), Expect = 0.007
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E EEK+K K KKKK KKKK K K KK+
Sbjct: 77 EYEEKQKWKWKKKKSKKKKDKDKDKKD 103
Score = 34.3 bits (79), Expect = 0.007
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
EE ++ K KKKK KKKK K K KK K
Sbjct: 78 YEEKQKWKWKKKKSKKKKDKDKDKKDDKK 106
Score = 32.7 bits (75), Expect = 0.027
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E+ + K KKKK KKKK K K KK KK+
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKDDKKD 107
Score = 32.0 bits (73), Expect = 0.045
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E +E++K K KKKK KKKK K K KK
Sbjct: 77 EYEEKQKWKWKKKKSKKKKDKDKDKKD 103
Score = 32.0 bits (73), Expect = 0.052
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++ ++ K KK KK K +KK +K+ +++
Sbjct: 92 KKKKDKDKDKKDDKKDDKSEKKDEKEAEDK 121
Score = 30.8 bits (70), Expect = 0.14
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++ +KKK K K KK KK K +KK
Sbjct: 88 KKKSKKKKDKDKDKKDDKKDDKSEKKD 114
Score = 30.4 bits (69), Expect = 0.19
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++ + KKKK K K KK KK K +KK
Sbjct: 87 KKKKSKKKKDKDKDKKDDKKDDKSEKK 113
Score = 30.4 bits (69), Expect = 0.19
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++K K K KK KK K +KK +K
Sbjct: 91 SKKKKDKDKDKKDDKKDDKSEKKDEKEA 118
Score = 30.0 bits (68), Expect = 0.23
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
+KKK KKKK K K KK KK K
Sbjct: 86 WKKKKSKKKKDKDKDKKDDKKDDK 109
Score = 29.7 bits (67), Expect = 0.30
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ ++ K K KK KK K +KK +K+
Sbjct: 90 KSKKKKDKDKDKKDDKKDDKSEKKDEKE 117
Score = 29.7 bits (67), Expect = 0.31
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+ ++ KKKK K K KK KK K +K
Sbjct: 86 WKKKKSKKKKDKDKDKKDDKKDDKSEKKDE 115
Score = 29.3 bits (66), Expect = 0.46
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++D++KK KK K +KK +K+ + K
Sbjct: 96 DKDKDKKDDKKDDKSEKKDEKEAEDKL 122
Score = 28.9 bits (65), Expect = 0.65
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ E+ EK KK+ ++K+K K KKKK KKK
Sbjct: 67 LAEEIEKVKKEYEEKQKWKWKKKKSKKKK 95
Score = 28.5 bits (64), Expect = 0.68
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++ ++K KK K +KK +K+ + K +
Sbjct: 97 KDKDKKDDKKDDKSEKKDEKEAEDKLE 123
Score = 28.5 bits (64), Expect = 0.86
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++ ++ KK KK K +KK +K+ + K
Sbjct: 95 KDKDKDKKDDKKDDKSEKKDEKEAEDKLE 123
Score = 28.1 bits (63), Expect = 0.97
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++ ++KK K K KK KK K +KK +
Sbjct: 88 KKKSKKKKDKDKDKKDDKKDDKSEKKDE 115
Score = 27.3 bits (61), Expect = 1.7
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++D++ KK K +KK +K+ + K +
Sbjct: 98 DKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 26.6 bits (59), Expect = 3.9
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
++D++K K +KK +K+ + K + K+
Sbjct: 101 KKDDKKDDKSEKKDEKEAEDKLEDLTKS 128
Score = 26.2 bits (58), Expect = 4.2
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++ ++KK K +KK +K+ + K +
Sbjct: 100 DKKDDKKDDKSEKKDEKEAEDKLEDLT 126
Score = 26.2 bits (58), Expect = 4.4
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
EE E+ KK+ ++K+K K KKKK KKKK+
Sbjct: 69 EEIEKVKKEYEEKQKWKWKKKKSKKKKD 96
Score = 25.4 bits (56), Expect = 8.1
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++ ++ KK K +KK +K+ + K + +
Sbjct: 99 KDKKDDKKDDKSEKKDEKEAEDKLEDLTK 127
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 34.5 bits (80), Expect = 0.007
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ E EKK++++KK+KKKK KKK++
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEE 442
Score = 32.2 bits (74), Expect = 0.058
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ +EEKK+KKKK KKK+++++++K
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKE 449
Score = 31.8 bits (73), Expect = 0.069
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++ +K KK +K +KK++++KK+KKK
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKK 432
Score = 31.8 bits (73), Expect = 0.074
Identities = 11/28 (39%), Positives = 22/28 (78%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+E+K+KKKK KKK+++++++K+
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKE 449
Score = 31.8 bits (73), Expect = 0.077
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++ +KK++++KK+KKKK KKK+
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEE 443
Score = 31.4 bits (72), Expect = 0.11
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++ EE+KK+KKKK KKK+++++++
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKE 449
Score = 31.4 bits (72), Expect = 0.11
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E+ E+K++++KK+KKKK KKK+++
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEE 444
Score = 31.4 bits (72), Expect = 0.11
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
EE +EKKKK KKK+++++++K+KK
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Score = 30.7 bits (70), Expect = 0.19
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+ E++KK+KKKK KKK++++++
Sbjct: 419 AEKKREEEKKEKKKKAFAGKKKEEEEEE 446
Score = 30.7 bits (70), Expect = 0.21
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
++ KK KK +K +KK++++KK+
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKE 429
Score = 30.3 bits (69), Expect = 0.23
Identities = 11/28 (39%), Positives = 23/28 (82%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
EE++++KKKK KKK+++++++K+K
Sbjct: 424 EEEKKEKKKKAFAGKKKEEEEEEEKEKK 451
Score = 30.3 bits (69), Expect = 0.23
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNRV 31
KK KK +K +KK++++KK+KK +
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKKKKA 434
Score = 30.3 bits (69), Expect = 0.24
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 1 MEEDEEK----KKKKKKKKKKKKKKKKKKKKKNRV 31
+ E+E + KK KK KK +K +KK+++ +
Sbjct: 394 LTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKK 428
Score = 30.3 bits (69), Expect = 0.26
Identities = 11/28 (39%), Positives = 22/28 (78%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+ E+KKK KKK+++++++K+KK+
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEEEKEKKE 452
Score = 29.9 bits (68), Expect = 0.29
Identities = 9/28 (32%), Positives = 22/28 (78%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ +++++++KK+KKKK KKK++++
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEE 444
Score = 29.5 bits (67), Expect = 0.51
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ +K +K +KK++++KK+KKKK
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKKKKAF 435
Score = 29.1 bits (66), Expect = 0.57
Identities = 8/29 (27%), Positives = 24/29 (82%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+++++KK KKK+++++++K+KK++ +
Sbjct: 427 KKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Score = 28.7 bits (65), Expect = 0.94
Identities = 9/27 (33%), Positives = 25/27 (92%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+ EE+K++++++ +++K+++++KKKK
Sbjct: 449 EKKEEEKEEEEEEAEEEKEEEEEKKKK 475
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 34.5 bits (79), Expect = 0.010
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E E K+++K+K++ K++KKKKK+K
Sbjct: 97 EPKNESGKEEEKEKEQVKEEKKKKKEK 123
Score = 32.9 bits (75), Expect = 0.032
Identities = 14/26 (53%), Positives = 23/26 (88%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
EEK+K++ K++KKKKK+K K++ K+R
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDR 131
Score = 32.9 bits (75), Expect = 0.033
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++E K+++K+K++ K++KKKKK+K
Sbjct: 98 PKNESGKEEEKEKEQVKEEKKKKKEKP 124
Score = 32.9 bits (75), Expect = 0.035
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EE E+++ K++KKKKK+K K++ K +K
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRK 132
Score = 32.9 bits (75), Expect = 0.037
Identities = 12/26 (46%), Positives = 22/26 (84%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
E +E++K+K++ K++KKKKK+K K+
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKE 126
Score = 32.6 bits (74), Expect = 0.049
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++ + + K+++K+K++ K++KKKKK
Sbjct: 95 AKEPKNESGKEEEKEKEQVKEEKKKKK 121
Score = 32.2 bits (73), Expect = 0.058
Identities = 9/27 (33%), Positives = 20/27 (74%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+E K + K+++K+K++ K++KKK +
Sbjct: 96 KEPKNESGKEEEKEKEQVKEEKKKKKE 122
Score = 31.8 bits (72), Expect = 0.079
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ + K+++K+K++ K++KKKKK+K K
Sbjct: 99 KNESGKEEEKEKEQVKEEKKKKKEKPK 125
Score = 31.4 bits (71), Expect = 0.11
Identities = 13/29 (44%), Positives = 23/29 (79%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE++EK++ K++KKKKK+K K++ K +
Sbjct: 105 EEEKEKEQVKEEKKKKKEKPKEEPKDRKP 133
Score = 31.4 bits (71), Expect = 0.11
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+++ K++KKKKK+K K++ K +K K+
Sbjct: 109 EKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Score = 31.0 bits (70), Expect = 0.13
Identities = 10/27 (37%), Positives = 22/27 (81%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+E + + K+++K+K++ K++KKKKK+
Sbjct: 96 KEPKNESGKEEEKEKEQVKEEKKKKKE 122
Score = 31.0 bits (70), Expect = 0.14
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE K+K+ K+K+K+K+KK ++ ++R
Sbjct: 135 EEAKEKRPPKEKEKEKEKKVEEPRDR 160
Score = 30.6 bits (69), Expect = 0.18
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E+E++K++ K++KKKKK+K K++ K +
Sbjct: 105 EEEKEKEQVKEEKKKKKEKPKEEPKDRKP 133
Score = 30.2 bits (68), Expect = 0.27
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ EEKKKKK+K K++ K +K K++ K
Sbjct: 112 QVKEEKKKKKEKPKEEPKDRKPKEEAK 138
Score = 29.9 bits (67), Expect = 0.31
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
EE +EK+ K+K+K+K+KK ++ + +
Sbjct: 135 EEAKEKRPPKEKEKEKEKKVEEPRDR 160
Score = 29.9 bits (67), Expect = 0.34
Identities = 10/30 (33%), Positives = 23/30 (76%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+E+ + +K K++ K+K+ K+K+K+K+ +V
Sbjct: 125 KEEPKDRKPKEEAKEKRPPKEKEKEKEKKV 154
Score = 29.9 bits (67), Expect = 0.36
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E ++++K+K++ K++KKKKK+K K+
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKE 126
Score = 29.5 bits (66), Expect = 0.46
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+E K+K+K+K+KK ++ + ++++K R
Sbjct: 138 KEKRPPKEKEKEKEKKVEEPRDREEEKKR 166
Score = 29.5 bits (66), Expect = 0.48
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ +++ K+K+ K+K+K+K+KK ++ R
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKVEEPR 158
Score = 29.1 bits (65), Expect = 0.61
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ + + K + KK KKK KKK+
Sbjct: 165 KRERVRAKSRPKKPPKKKPPNKKKEPPEE 193
Score = 29.1 bits (65), Expect = 0.73
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++E K +K K++ K+K+ K+K+K+K +
Sbjct: 124 PKEEPKDRKPKEEAKEKRPPKEKEKEKEK 152
Score = 28.7 bits (64), Expect = 0.84
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++ + K++ K+K+ K+K+K+K+KK +
Sbjct: 129 KDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157
Score = 28.3 bits (63), Expect = 1.2
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 11/41 (26%)
Query: 2 EEDEEKKKKK-----------KKKKKKKKKKKKKKKKKNRV 31
E+++EKK ++ + + K + KK KKK N+
Sbjct: 147 EKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKK 187
Score = 28.3 bits (63), Expect = 1.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
EE + ++ + K + KK KKK KKK
Sbjct: 162 EEKKRERVRAKSRPKKPPKKKPPNKKKEPP 191
Score = 27.9 bits (62), Expect = 1.7
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++E+KKKK+K K++ K +K K++ K+ R
Sbjct: 113 VKEEKKKKKEKPKEEPKDRKPKEEAKEKR 141
Score = 27.9 bits (62), Expect = 1.7
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+ KKK KKK+ +++K+++ + V
Sbjct: 175 PKKPPKKKPPNKKKEPPEEEKQRQAAREAV 204
Score = 27.9 bits (62), Expect = 1.8
Identities = 8/28 (28%), Positives = 20/28 (71%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+++ K++ K +K K++ K+K+ K+K +
Sbjct: 121 KEKPKEEPKDRKPKEEAKEKRPPKEKEK 148
Score = 27.5 bits (61), Expect = 1.9
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+E+++KKK+K K++ K +K K++ K+K
Sbjct: 114 KEEKKKKKEKPKEEPKDRKPKEEAKEKRP 142
Score = 27.5 bits (61), Expect = 2.2
Identities = 8/29 (27%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+E+ ++K+ K+K+K+K+KK ++ + +
Sbjct: 134 KEEAKEKRPPKEKEKEKEKKVEEPRDREE 162
Score = 27.2 bits (60), Expect = 2.9
Identities = 9/27 (33%), Positives = 22/27 (81%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRV 31
++K+K+K+KK ++ + ++++KK+ RV
Sbjct: 143 PKEKEKEKEKKVEEPRDREEEKKRERV 169
Score = 27.2 bits (60), Expect = 3.1
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ KKK KKK+ +++K+++
Sbjct: 174 RPKKPPKKKPPNKKKEPPEEEKQRQAA 200
Score = 27.2 bits (60), Expect = 3.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E K + KK KKK KKK+ +
Sbjct: 165 KRERVRAKSRPKKPPKKKPPNKKKEPPE 192
Score = 27.2 bits (60), Expect = 3.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRV 31
KK KKK KKK+ +++K++
Sbjct: 174 RPKKPPKKKPPNKKKEPPEEEKQRQAA 200
Score = 26.8 bits (59), Expect = 4.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ KK KKK KKK+ +++K+
Sbjct: 169 VRAKSRPKKPPKKKPPNKKKEPPEEEKQ 196
Score = 26.4 bits (58), Expect = 4.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ + KK KKK KKK+ +++K R
Sbjct: 169 VRAKSRPKKPPKKKPPNKKKEPPEEEKQR 197
Score = 26.4 bits (58), Expect = 5.9
Identities = 7/28 (25%), Positives = 22/28 (78%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E+++EK+KK ++ + ++++KK+++ +
Sbjct: 145 EKEKEKEKKVEEPRDREEEKKRERVRAK 172
Score = 26.4 bits (58), Expect = 6.1
Identities = 6/24 (25%), Positives = 17/24 (70%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
K+ K + K+++K+K++ K++ +
Sbjct: 95 AKEPKNESGKEEEKEKEQVKEEKK 118
Score = 26.0 bits (57), Expect = 6.6
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
+K KKK KKK+ +++K+++
Sbjct: 173 SRPKKPPKKKPPNKKKEPPEEEKQRQ 198
Score = 26.0 bits (57), Expect = 7.3
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
++ KKK KKK+ +++K+++ R
Sbjct: 173 SRPKKPPKKKPPNKKKEPPEEEKQRQAARE 202
Score = 26.0 bits (57), Expect = 7.8
Identities = 7/29 (24%), Positives = 23/29 (79%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+E E++K+KK ++ + ++++KK+++ + +
Sbjct: 144 KEKEKEKEKKVEEPRDREEEKKRERVRAK 172
Score = 26.0 bits (57), Expect = 8.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E+E+K+++ + K + KK KKK K +
Sbjct: 160 REEEKKRERVRAKSRPKKPPKKKPPNKKKE 189
Score = 25.6 bits (56), Expect = 9.5
Identities = 8/27 (29%), Positives = 21/27 (77%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+EK+K+K+KK ++ + ++++KK++
Sbjct: 142 PPKEKEKEKEKKVEEPRDREEEKKRER 168
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 33.9 bits (78), Expect = 0.013
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAWLY 38
E E +KKK + KKK K KK + + V G WL
Sbjct: 146 CERTEILAEKKKPRSKKKSSKNSKKLRIDLV--GEWLS 181
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 33.8 bits (78), Expect = 0.014
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E+ + K++ KKKK K+ K K KK
Sbjct: 248 AEKKRKSKEEIKKKKPKESKGVKALKKVV 276
Score = 32.3 bits (74), Expect = 0.041
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ +E+ KKKK K+ K K KK K
Sbjct: 252 RKSKEEIKKKKPKESKGVKALKKVVAKGM 280
Score = 31.1 bits (71), Expect = 0.12
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E+K+K K++ KKKK K+ K K +V
Sbjct: 245 ESRAEKKRKSKEEIKKKKPKESKGVKALKKV 275
Score = 30.8 bits (70), Expect = 0.14
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+E+ +KKK K+ K K KK K K
Sbjct: 254 SKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 30.4 bits (69), Expect = 0.19
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E +KK+K K++ KKKK K+ K K
Sbjct: 243 AAESRAEKKRKSKEEIKKKKPKESKGVKA 271
Score = 28.5 bits (64), Expect = 0.84
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+ E + + +KK+K K++ KKKK K+++
Sbjct: 239 EDVEAAESRAEKKRKSKEEIKKKKPKESK 267
Score = 28.5 bits (64), Expect = 0.94
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+E E + +KK+K K++ KKKK K+ K
Sbjct: 241 VEAAESRAEKKRKSKEEIKKKKPKESKG 268
Score = 27.7 bits (62), Expect = 1.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EED E + + +KK+K K++ KKKK K
Sbjct: 237 TEEDVEAAESRAEKKRKSKEEIKKKKPK 264
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 33.8 bits (78), Expect = 0.016
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKK 27
+ E KK +KK++K +KK +K++ +K
Sbjct: 406 LSPAERKKLRKKQRKAEKKAEKEEAEK 432
Score = 33.8 bits (78), Expect = 0.018
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+KK +KK++K +KK +K++ +K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAA 434
Score = 32.2 bits (74), Expect = 0.059
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++KK +KK++K +KK +K++ +
Sbjct: 405 NLSPAERKKLRKKQRKAEKKAEKEEAEKA 433
Score = 30.7 bits (70), Expect = 0.19
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E EE +K KKK + KK K
Sbjct: 425 AEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
Score = 29.5 bits (67), Expect = 0.41
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
KK++K +KK +K++ +K KK
Sbjct: 416 KKQRKAEKKAEKEEAEKAAAKK 437
Score = 29.1 bits (66), Expect = 0.57
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++KK +KK++K +KK +K++
Sbjct: 403 NGNLSPAERKKLRKKQRKAEKKAEKEEA 430
Score = 29.1 bits (66), Expect = 0.68
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
EKK +K++ +K KKK + K
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKA 446
Score = 27.6 bits (62), Expect = 2.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E + +K++ +K KKK + KK K
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKAK 447
Score = 27.6 bits (62), Expect = 2.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E+ EK++ +K KKK + KK K
Sbjct: 422 EKKAEKEEAEKAAAKKKAEAAAKKAKGP 449
Score = 27.2 bits (61), Expect = 2.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
+K +KK +K++ +K KKK +
Sbjct: 419 RKAEKKAEKEEAEKAAAKKKAE 440
Score = 26.8 bits (60), Expect = 3.7
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E KKK + KK K + KK +
Sbjct: 430 AEKAAAKKKAEAAAKKAKGPDGETKKVD 457
Score = 26.8 bits (60), Expect = 4.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+K +K++ +K KKK + KK +
Sbjct: 422 EKKAEKEEAEKAAAKKKAEAAAKKAK 447
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association
with pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 32.3 bits (74), Expect = 0.016
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++KKKKKKK KKK K+ +KK +
Sbjct: 34 RISQRNRRKKKKKKKLKKKSKEWILRKKEQ 63
Score = 30.3 bits (69), Expect = 0.083
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ D K ++ ++ ++KKKKKKK KKK++
Sbjct: 26 QIDASKVRRISQRNRRKKKKKKKLKKKSK 54
Score = 28.8 bits (65), Expect = 0.26
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+ + ++ ++ ++KKKKKKK KKK K +
Sbjct: 28 DASKVRRISQRNRRKKKKKKKLKKKSKEWI 57
Score = 27.3 bits (61), Expect = 0.98
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+ + K ++ ++ ++KKKKKKK KK
Sbjct: 24 DEQIDASKVRRISQRNRRKKKKKKKLKK 51
Score = 25.7 bits (57), Expect = 4.2
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
++++ K ++ ++ ++KKKKKKK
Sbjct: 22 EDDEQIDASKVRRISQRNRRKKKKKKKLK 50
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 32.0 bits (73), Expect = 0.019
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
K KK KKKKKKKKKK K K+
Sbjct: 13 KGKKIDVKKKKKKKKKKNKSKEE 35
Score = 30.1 bits (68), Expect = 0.10
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKN 29
+ KKKKKKKKKK K K++ +K
Sbjct: 18 DVKKKKKKKKKKNKSKEEVVTEKE 41
Score = 30.1 bits (68), Expect = 0.10
Identities = 15/22 (68%), Positives = 15/22 (68%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
K K KK KKKKKKKKKK K
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKS 32
Score = 29.7 bits (67), Expect = 0.16
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
KK KKKKKKKKKK K K++
Sbjct: 15 KKIDVKKKKKKKKKKNKSKEEV 36
Score = 29.3 bits (66), Expect = 0.18
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
KKKKKKKKKK K K++ +K+
Sbjct: 20 KKKKKKKKKKNKSKEEVVTEKEEE 43
Score = 29.3 bits (66), Expect = 0.22
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 10 KKKKKKKKKKKKKKKKKKKNRV 31
K K KK KKKKKKKKKKN+
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKS 32
Score = 28.9 bits (65), Expect = 0.30
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 9 KKKKKKKKKKKKKKKKKKKKN 29
K K KK KKKKKKKKKK
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNK 31
Score = 28.2 bits (63), Expect = 0.52
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKK 28
+KKKKKKKKK K K++ +K++
Sbjct: 20 KKKKKKKKKKNKSKEEVVTEKEE 42
Score = 27.8 bits (62), Expect = 0.66
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
K K K KK KKKKKKKKK
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKK 29
Score = 26.2 bits (58), Expect = 2.7
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKNR 30
K K K KK KKKKKKKK +
Sbjct: 7 GGKLKLKGKKIDVKKKKKKKKKK 29
Score = 26.2 bits (58), Expect = 2.9
Identities = 13/27 (48%), Positives = 13/27 (48%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E K K K KK KKKKKKK
Sbjct: 1 EYSNVVGGKLKLKGKKIDVKKKKKKKK 27
Score = 25.8 bits (57), Expect = 3.8
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKK 27
++KKKKKKKK K K++ +K++
Sbjct: 20 KKKKKKKKKKNKSKEEVVTEKEE 42
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 33.5 bits (77), Expect = 0.019
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+EE+ KKKKKKKKKK KK + V
Sbjct: 176 LEEERAKKKKKKKKKKTKKNNATGSSAEATV 206
Score = 33.5 bits (77), Expect = 0.019
Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 2 EEDEEKKKK-KKKKKKKKKKKKKKKKKKN 29
EE E K + ++++ KKKKKKKKKK KKN
Sbjct: 167 EEVELLKARLEEERAKKKKKKKKKKTKKN 195
Score = 31.9 bits (73), Expect = 0.056
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EE+ E K + ++++ KKKKKKKKKK
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKT 192
Score = 28.9 bits (65), Expect = 0.69
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+E + K + ++++ KKKKKKKKKK
Sbjct: 164 PTEEEVELLKARLEEERAKKKKKKKKKK 191
Score = 28.5 bits (64), Expect = 0.79
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+EE + K + ++++ KKKKKKKKK
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKT 192
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 33.3 bits (76), Expect = 0.020
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNR 30
EKKKK K KK K K KK + KKK R
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 32.1 bits (73), Expect = 0.041
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKN 29
E+KKK K KK K K KK + KKK
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 31.0 bits (70), Expect = 0.12
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNRVC 32
E ++K K KK K K KK + KKK ++
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAREGWNN 119
Score = 29.0 bits (65), Expect = 0.60
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKK 26
E+ ++ K KK K K KK + KKK +
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 26.3 bits (58), Expect = 4.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNRVC 32
+ + K KK K K KK + KKK ++ N
Sbjct: 92 KKKGKSKKNKLKGKKDEDKKKAREGWNNFS 121
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 32.6 bits (75), Expect = 0.021
Identities = 8/28 (28%), Positives = 20/28 (71%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ DE +K+ K K++K+++ ++K+K+
Sbjct: 118 EQIDELLEKELAKLKREKRRENERKQKE 145
Score = 31.9 bits (73), Expect = 0.044
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E E++ K K++K+++ ++K+K+ K +
Sbjct: 122 ELLEKELAKLKREKRRENERKQKEILKEQ 150
Score = 31.1 bits (71), Expect = 0.082
Identities = 6/29 (20%), Positives = 20/29 (68%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++ +K+ K K++K+++ ++K+K+ +
Sbjct: 120 IDELLEKELAKLKREKRRENERKQKEILK 148
Score = 30.7 bits (70), Expect = 0.11
Identities = 8/30 (26%), Positives = 21/30 (70%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E+ +E +K+ K K++K+++ ++K+K +
Sbjct: 118 EQIDELLEKELAKLKREKRRENERKQKEIL 147
Score = 29.9 bits (68), Expect = 0.25
Identities = 7/31 (22%), Positives = 22/31 (70%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+E++ K K++K+++ ++K+K+ K++ +
Sbjct: 124 LEKELAKLKREKRRENERKQKEILKEQMKML 154
Score = 27.3 bits (61), Expect = 1.9
Identities = 6/30 (20%), Positives = 21/30 (70%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++E+E+ + +K+ K K++K+++ ++ +
Sbjct: 114 LDEEEQIDELLEKELAKLKREKRRENERKQ 143
Score = 26.1 bits (58), Expect = 4.7
Identities = 8/29 (27%), Positives = 21/29 (72%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+EE +E+++ + +K+ K K++K+++N
Sbjct: 111 VEELDEEEQIDELLEKELAKLKREKRREN 139
Score = 25.3 bits (56), Expect = 9.5
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E DEE++ + +K+ K K++K+++ R
Sbjct: 113 ELDEEEQIDELLEKELAKLKREKRRENER 141
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region
covers both the Brf homology II and III regions. This
region is involved in binding TATA binding protein.
Length = 95
Score = 31.8 bits (73), Expect = 0.023
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 1 MEEDEEKKKKKKKKK--KKKKKKKKKKKKKNRV 31
+EE EEK+ K+K + KKKKK+K KK R
Sbjct: 29 LEEQEEKELKQKADEGNNSGKKKKKRKAKKKRD 61
Score = 28.4 bits (64), Expect = 0.48
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKK 26
+ DE KKKKK+K KKK+ +
Sbjct: 40 KADEGNNSGKKKKKRKAKKKRDEAG 64
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 32.8 bits (75), Expect = 0.030
Identities = 10/25 (40%), Positives = 21/25 (84%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKK 26
EE+E+K+K++ + K+K++K ++KK
Sbjct: 410 EENEKKQKEQADEDKEKRQKDERKK 434
Score = 31.3 bits (71), Expect = 0.12
Identities = 9/24 (37%), Positives = 19/24 (79%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
EE +KK+K++ + K+K++K ++K
Sbjct: 410 EENEKKQKEQADEDKEKRQKDERK 433
Score = 29.8 bits (67), Expect = 0.36
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKK 27
E+ EKK+K++ + K+K++K ++KK
Sbjct: 410 EENEKKQKEQADEDKEKRQKDERKK 434
Score = 29.8 bits (67), Expect = 0.37
Identities = 8/29 (27%), Positives = 23/29 (79%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+E++ K+++ +KK+K++ + K+K++K+
Sbjct: 403 KEEKLKQEENEKKQKEQADEDKEKRQKDE 431
Score = 29.8 bits (67), Expect = 0.38
Identities = 9/27 (33%), Positives = 22/27 (81%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+++E +KK+K++ + K+K++K ++KK
Sbjct: 408 KQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 29.0 bits (65), Expect = 0.67
Identities = 7/27 (25%), Positives = 20/27 (74%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ +E+ +KK+K++ + K+K++K ++
Sbjct: 406 KLKQEENEKKQKEQADEDKEKRQKDER 432
Score = 27.1 bits (60), Expect = 3.2
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE ++++ +KK+K++ + K+K++K R
Sbjct: 404 EEKLKQEENEKKQKEQADEDKEKRQKDER 432
Score = 26.7 bits (59), Expect = 3.7
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ EEK K+++ +KK+K++ + K+K+ +
Sbjct: 401 KAKEEKLKQEENEKKQKEQADEDKEKRQK 429
Score = 26.7 bits (59), Expect = 3.9
Identities = 7/29 (24%), Positives = 22/29 (75%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+ ++++ +KK+K++ + K+K++K + +
Sbjct: 405 EKLKQEENEKKQKEQADEDKEKRQKDERK 433
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 32.8 bits (76), Expect = 0.032
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
+D KK K +K K++ +K
Sbjct: 830 KDPAGKKAAVKFSRKTKQQYVASEKD 855
Score = 32.1 bits (74), Expect = 0.066
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
K KK K +K K+ V
Sbjct: 826 DAPAKDPAGKKAAVKFSRKTKQQYV 850
Score = 31.7 bits (73), Expect = 0.090
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E EK + K KK K +R
Sbjct: 815 AEKPEKLRYLADAPAKDPAGKKAAVKFSR 843
Score = 30.9 bits (71), Expect = 0.14
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKK 28
+ K KK K +K K++
Sbjct: 826 DAPAKDPAGKKAAVKFSRKTKQQ 848
Score = 30.9 bits (71), Expect = 0.14
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
K KK K +K K
Sbjct: 825 ADAPAKDPAGKKAAVKFSRKTK 846
Score = 30.9 bits (71), Expect = 0.17
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
K K +K K++ +K K
Sbjct: 836 KAAVKFSRKTKQQYVASEKDGK 857
Score = 30.5 bits (70), Expect = 0.20
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++ KK K +K K++ +K
Sbjct: 830 KDPAGKKAAVKFSRKTKQQYVASEKDG 856
Score = 30.5 bits (70), Expect = 0.24
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
+ K KK K +K K++
Sbjct: 826 DAPAKDPAGKKAAVKFSRKTKQQY 849
Score = 30.1 bits (69), Expect = 0.25
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
KK K +K K++ +K+
Sbjct: 833 AGKKAAVKFSRKTKQQYVASEKD 855
Score = 29.8 bits (68), Expect = 0.45
Identities = 5/22 (22%), Positives = 6/22 (27%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
K KK K +K
Sbjct: 824 LADAPAKDPAGKKAAVKFSRKT 845
Score = 29.4 bits (67), Expect = 0.57
Identities = 5/23 (21%), Positives = 6/23 (26%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
K KK K +K
Sbjct: 823 YLADAPAKDPAGKKAAVKFSRKT 845
Score = 29.0 bits (66), Expect = 0.65
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 7 KKKKKKKKKKKKKKKKKKKKK 27
K +K K++ +K K
Sbjct: 838 AVKFSRKTKQQYVASEKDGKA 858
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 32.6 bits (75), Expect = 0.032
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E +K+K ++++K K K +KK+K R
Sbjct: 123 EAAGEKEKAPRRERKPKPKAPRKKRKPR 150
Score = 31.8 bits (73), Expect = 0.056
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E EK+K ++++K K K +KK+K
Sbjct: 123 EAAGEKEKAPRRERKPKPKAPRKKRKP 149
Score = 31.8 bits (73), Expect = 0.057
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E++K ++++K K K +KK+K + +
Sbjct: 124 AAGEKEKAPRRERKPKPKAPRKKRKPRAQK 153
Score = 31.4 bits (72), Expect = 0.070
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++ E +K+K ++++K K K +KK +
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKAPRKKRK 148
Score = 30.7 bits (70), Expect = 0.16
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+ +K++ +K+K ++++K K K R
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPKAPR 144
Score = 29.1 bits (66), Expect = 0.51
Identities = 5/25 (20%), Positives = 16/25 (64%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNR 30
++ +++ KK++ +K+K ++ R
Sbjct: 112 AQRAEQQAKKREAAGEKEKAPRRER 136
Score = 28.4 bits (64), Expect = 0.88
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E E+ ++++K K K +KK+K + +
Sbjct: 126 GEKEKAPRRERKPKPKAPRKKRKPRAQKPE 155
Score = 27.6 bits (62), Expect = 1.6
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+E ++++K K K +KK+K + +K
Sbjct: 128 KEKAPRRERKPKPKAPRKKRKPRAQKPEPQ 157
Score = 27.2 bits (61), Expect = 2.3
Identities = 7/27 (25%), Positives = 18/27 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EE + K + ++ +++ KK++ +K+K
Sbjct: 104 EEAKAKVQAQRAEQQAKKREAAGEKEK 130
Score = 26.8 bits (60), Expect = 3.0
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+++K K K +KK+K + +K + +
Sbjct: 132 PRRERKPKPKAPRKKRKPRAQKPEPQH 158
Score = 26.4 bits (59), Expect = 4.1
Identities = 5/24 (20%), Positives = 15/24 (62%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
+ ++ +++ KK++ +K+K R
Sbjct: 111 QAQRAEQQAKKREAAGEKEKAPRR 134
Score = 26.4 bits (59), Expect = 4.3
Identities = 4/26 (15%), Positives = 17/26 (65%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
++ +++ KK++ +K+K +++ +
Sbjct: 112 AQRAEQQAKKREAAGEKEKAPRRERK 137
Score = 26.0 bits (58), Expect = 5.4
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+ ++K K K +KK+K + +K +
Sbjct: 130 KAPRRERKPKPKAPRKKRKPRAQKPEPQHT 159
Score = 26.0 bits (58), Expect = 6.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
K K K +KK+K + +K + + V
Sbjct: 137 KPKPKAPRKKRKPRAQKPEPQHTPV 161
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 32.9 bits (75), Expect = 0.033
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE+ E+KKKK++K K+K+ KK K +K
Sbjct: 15 EEELERKKKKEEKAKEKELKKLKAAQKEA 43
Score = 31.4 bits (71), Expect = 0.11
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKK 27
EE+ ++KKKK++K K+K+ KK K
Sbjct: 11 KILTEEELERKKKKEEKAKEKELKKLK 37
Score = 29.5 bits (66), Expect = 0.50
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ E+E ++KKKK++K K+K+ KK K +
Sbjct: 13 LTEEELERKKKKEEKAKEKELKKLKAAQ 40
Score = 29.1 bits (65), Expect = 0.66
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+EE ++KKKK++K K+K+ KK K +
Sbjct: 13 LTEEELERKKKKEEKAKEKELKKLKAAQK 41
Score = 28.7 bits (64), Expect = 1.0
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 2 EEDEEKKKK--KKKKKKKKKKKKKKKKKKNRV 31
EE E KKKK K K+K+ KK K +K+ K ++
Sbjct: 16 EELERKKKKEEKAKEKELKKLKAAQKEAKAKL 47
Score = 26.8 bits (59), Expect = 3.9
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+ +++ ++KKKK++K K+K+ KK
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKK 35
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 32.7 bits (75), Expect = 0.036
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
E EEK+ K++K+ +K KK+++KKKK
Sbjct: 556 EKEEKEALKEQKRLRKLKKQEEKKKK 581
Score = 31.2 bits (71), Expect = 0.12
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE E K++K+ +K KK+++KKKK+ +
Sbjct: 558 EEKEALKEQKRLRKLKKQEEKKKKELEKL 586
Score = 30.8 bits (70), Expect = 0.17
Identities = 11/28 (39%), Positives = 23/28 (82%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E++E++ K++K+ +K KK+++KKKK+
Sbjct: 556 EKEEKEALKEQKRLRKLKKQEEKKKKEL 583
Score = 28.8 bits (65), Expect = 0.92
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++ EE +++K++K+ K++K+ +K KK
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQE 576
Score = 28.1 bits (63), Expect = 1.4
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVC 32
E +E+K+ +K KK+++KKKK+ +K +
Sbjct: 561 EALKEQKRLRKLKKQEEKKKKELEKLEKAKI 591
Score = 27.7 bits (62), Expect = 2.0
Identities = 9/26 (34%), Positives = 21/26 (80%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+++K+ K++K+ +K KK+++KK +
Sbjct: 556 EKEEKEALKEQKRLRKLKKQEEKKKK 581
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 32.8 bits (75), Expect = 0.045
Identities = 17/37 (45%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIG-AW 36
+ + E+K KKKKKK+KKK+++ K+++K R+ I AW
Sbjct: 737 ISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAEAW 773
Score = 30.1 bits (68), Expect = 0.36
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKK 25
EED + KK+K KK+ K +
Sbjct: 1558 EEDYAESDIKKRKNKKQYKSNTEA 1581
Score = 27.4 bits (61), Expect = 2.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+D E K ++K KKKKKK+KKK+
Sbjct: 729 NGKDAEFKISDSVEEKTKKKKKKEKKKEEE 758
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 32.4 bits (74), Expect = 0.047
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKK 25
EE +E+++K++KKKK KK K+
Sbjct: 59 EEVDEEEEKEEKKKKTKKVKETTT 82
Score = 29.7 bits (67), Expect = 0.41
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKK 26
EE+ +++++K++KKKK KK K+
Sbjct: 58 EEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 29.7 bits (67), Expect = 0.41
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++EE+K++KKKK KK K+ + + N+
Sbjct: 61 VDEEEEKEEKKKKTKKVKETTTEWELLNK 89
Score = 29.4 bits (66), Expect = 0.53
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
+E+E ++++K++KKKK KK K+
Sbjct: 57 KEEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 29.0 bits (65), Expect = 0.70
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 14/45 (31%)
Query: 1 MEEDEEKKKKKKK--------------KKKKKKKKKKKKKKKNRV 31
EE+EE+K++KK+ +++K++KKKK KK K
Sbjct: 37 DEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETT 81
Score = 29.0 bits (65), Expect = 0.79
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ EE+ ++++K++KKKK KK K+
Sbjct: 55 TDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 28.2 bits (63), Expect = 1.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EE EEKKKK KK K+ + + K K
Sbjct: 65 EEKEEKKKKTKKVKETTTEWELLNKTK 91
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 32.0 bits (73), Expect = 0.056
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVC 32
E++E + K+ KKKKKKKKKKKKK
Sbjct: 45 SENQEAENKQNNKKKKKKKKKKKKKNLGEAY 75
Score = 31.6 bits (72), Expect = 0.096
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGA 35
E E + K+ KKKKKKKKKKKKK +
Sbjct: 45 SENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAY 79
Score = 30.1 bits (68), Expect = 0.27
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRVC 32
E+E K++K++ K+K KKK KK KK
Sbjct: 5 NGENEVKQQKQQNKQKGTKKKNKKSKKDVDDD 36
Score = 29.7 bits (67), Expect = 0.37
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ + + K++K++ K+K KKK KK+
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKS 29
Score = 29.3 bits (66), Expect = 0.48
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E E + K++K++ K+K KKK KK K V
Sbjct: 3 NENGENEVKQQKQQNKQKGTKKKNKKSKKDV 33
Score = 29.3 bits (66), Expect = 0.59
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ + ++ + K+ KKKKKKKKKKKKK
Sbjct: 43 LISENQEAENKQNNKKKKKKKKKKKKKNL 71
Score = 27.8 bits (62), Expect = 1.7
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E E ++ + K+ KKKKKKKKKKKK
Sbjct: 42 ELISENQEAENKQNNKKKKKKKKKKKKK 69
Score = 27.0 bits (60), Expect = 3.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ + ++ + K+ KKKKKKKKKK +
Sbjct: 39 FLAELISENQEAENKQNNKKKKKKKKKKKK 68
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 32.1 bits (73), Expect = 0.059
Identities = 12/27 (44%), Positives = 22/27 (81%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+EDE+ ++ K++ +KK+K KKK +K+K
Sbjct: 342 DEDEDDEESKEEVEKKQKVKKKPRKRK 368
Score = 31.3 bits (71), Expect = 0.13
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
E+DEE K++ +KK+K KKK +K+K
Sbjct: 345 EDDEESKEEVEKKQKVKKKPRKRKVN 370
Score = 30.1 bits (68), Expect = 0.29
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ED+E+ K++ +KK+K KKK +K+K
Sbjct: 343 EDEDDEESKEEVEKKQKVKKKPRKRKVN 370
Score = 28.6 bits (64), Expect = 1.0
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++++E ++ K++ +KK+K KKK +K+
Sbjct: 341 DDEDEDDEESKEEVEKKQKVKKKPRKR 367
Score = 28.6 bits (64), Expect = 1.0
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E+DE++ ++ K++ +KK+K KKK +K +V
Sbjct: 340 EDDEDEDDEESKEEVEKKQKVKKKPRKRKV 369
Score = 27.1 bits (60), Expect = 2.7
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ED+E + ++ K++ +KK+K KKK + R
Sbjct: 339 DEDDEDEDDEESKEEVEKKQKVKKKPRKR 367
Score = 27.1 bits (60), Expect = 3.3
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
DE+ + + ++ K++ +KK+K KKK R
Sbjct: 337 GIDEDDEDEDDEESKEEVEKKQKVKKKPR 365
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 32.0 bits (73), Expect = 0.061
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
E D + +KK K K KK +K KK
Sbjct: 764 EPDSAFRGEKKAKPKAAKKDARKAKK 789
Score = 30.5 bits (69), Expect = 0.22
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
+KK K K KK +K KK K +
Sbjct: 772 EKKAKPKAAKKDARKAKKPSAKTQ 795
Score = 30.5 bits (69), Expect = 0.23
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
+++ K K KK +K KK K +K
Sbjct: 772 EKKAKPKAAKKDARKAKKPSAKTQK 796
Score = 30.5 bits (69), Expect = 0.24
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E + + +KK K K KK +K KK
Sbjct: 764 EPDSAFRGEKKAKPKAAKKDARKAKKP 790
Score = 30.1 bits (68), Expect = 0.29
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKK 27
E + K K KK +K KK K +K
Sbjct: 772 EKKAKPKAAKKDARKAKKPSAKTQK 796
Score = 30.1 bits (68), Expect = 0.33
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNRV 31
EKK K K KK +K KK K ++
Sbjct: 772 EKKAKPKAAKKDARKAKKPSAKTQKI 797
Score = 29.7 bits (67), Expect = 0.36
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKK 26
E+ + K KK +K KK K +K
Sbjct: 772 EKKAKPKAAKKDARKAKKPSAKTQK 796
Score = 27.4 bits (61), Expect = 2.5
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ + KK +K KK K +K +
Sbjct: 774 KAKPKAAKKDARKAKKPSAKTQKIAAATK 802
Score = 26.6 bits (59), Expect = 4.1
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
Query: 2 EEDEEKKKKKKKKKKKKKKKK-------KKKKKKNR 30
+ KK +K KK K +K K+ KK
Sbjct: 776 KPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKV 811
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 31.7 bits (72), Expect = 0.067
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E+ EK++K+ K+ ++K+ K KK+K
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKK 119
Score = 31.3 bits (71), Expect = 0.084
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+E +E K+ ++K+ K KK+KK+KK+ +V
Sbjct: 97 KEQKEVSKETEEKEAIKAKKEKKEKKEKKV 126
Score = 28.6 bits (64), Expect = 0.61
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E+++++ K+ ++K+ K KK+KK+KK
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKE 123
Score = 28.6 bits (64), Expect = 0.72
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E E+K+ K+ ++K+ K KK+KK+K
Sbjct: 95 SEKEQKEVSKETEEKEAIKAKKEKKEK 121
Score = 28.2 bits (63), Expect = 0.87
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E ++E+K+ K+ ++K+ K KK+KK+
Sbjct: 94 ESEKEQKEVSKETEEKEAIKAKKEKKE 120
Score = 27.4 bits (61), Expect = 2.0
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
+E EEK+ K KK+KK+KK+KK +K
Sbjct: 104 KETEEKEAIKAKKEKKEKKEKKVAEK 129
Score = 26.6 bits (59), Expect = 2.8
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++ E+K+ K KK+KK+KK+KK +K
Sbjct: 103 SKETEEKEAIKAKKEKKEKKEKKVAEK 129
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 31.9 bits (72), Expect = 0.067
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E D K ++++KKK+K++ KK K +
Sbjct: 553 ELDRTDKNRERRKKKRKRRAAKKAVTKAK 581
Score = 28.8 bits (64), Expect = 0.96
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
D+ ++++KKK+K++ KK K KK R
Sbjct: 557 TDKNRERRKKKRKRRAAKKAVTKAKKER 584
Score = 26.1 bits (57), Expect = 6.4
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ E + K ++++KKK+K++ KK
Sbjct: 549 KSKTELDRTDKNRERRKKKRKRRAAKKAV 577
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain.
This presumed domain is found at the N-terminus of
Ribosomal L30 proteins and has been termed RL30NT or
NUC018.
Length = 71
Score = 29.9 bits (68), Expect = 0.088
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKN 29
+E+ + K+ KK+ KK +KKK+K
Sbjct: 9 NEKLRAKRAKKRAAKKAARKKKRKLI 34
Score = 27.2 bits (61), Expect = 0.77
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKK 28
K+ KK+ KK +KKK+K K
Sbjct: 14 AKRAKKRAAKKAARKKKRKLIFK 36
Score = 27.2 bits (61), Expect = 0.78
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
++ KK+ KK +KKK+K K+
Sbjct: 14 AKRAKKRAAKKAARKKKRKLIFKR 37
Score = 26.8 bits (60), Expect = 1.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
K+ KK+ KK +KKK+K R
Sbjct: 14 AKRAKKRAAKKAARKKKRKLIFKR 37
Score = 26.4 bits (59), Expect = 1.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNR 30
++ +K + K+ KK+ KK +KK R
Sbjct: 7 KRNEKLRAKRAKKRAAKKAARKKKR 31
Score = 26.0 bits (58), Expect = 2.1
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
K+K+ +K + K+ KK+ KK +
Sbjct: 5 KRKRNEKLRAKRAKKRAAKKAARKK 29
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 31.2 bits (71), Expect = 0.100
Identities = 7/36 (19%), Positives = 28/36 (77%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAWL 37
++ ++K++++++K++KK+++++++K+K W+
Sbjct: 193 KQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWM 228
Score = 27.4 bits (61), Expect = 1.9
Identities = 9/27 (33%), Positives = 24/27 (88%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+E E KK K++++K++++++K++KK++
Sbjct: 185 QEWELKKLKQQQQKREEERRKQRKKQQ 211
Score = 27.4 bits (61), Expect = 2.0
Identities = 6/36 (16%), Positives = 30/36 (83%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAW 36
+++ +++++K++++++K++KK+++++++ + AW
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAW 224
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 30.9 bits (70), Expect = 0.10
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ED + K + K+KKK++ K K +K+
Sbjct: 111 QEDPPETKTESKEKKKREVPKPKTEKEKP 139
Score = 29.7 bits (67), Expect = 0.24
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
DE +++ + K + K+KKK++ K
Sbjct: 105 STDETEQEDPPETKTESKEKKKREVPK 131
Score = 29.3 bits (66), Expect = 0.37
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E ++E + K + K+KKK++ K K +
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEK 136
Score = 29.0 bits (65), Expect = 0.56
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++ E++ + K + K+KKK++ K
Sbjct: 106 TDETEQEDPPETKTESKEKKKREVPKPKT 134
Score = 28.6 bits (64), Expect = 0.59
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+++ + K + K+KKK++ K K +K +
Sbjct: 110 EQEDPPETKTESKEKKKREVPKPKTEKEK 138
Score = 28.2 bits (63), Expect = 0.87
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+E E++ + K + K+KKK++ K K
Sbjct: 107 DETEQEDPPETKTESKEKKKREVPKPKTE 135
Score = 27.8 bits (62), Expect = 1.2
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E +E +++ + K + K+KKK++
Sbjct: 104 ESTDETEQEDPPETKTESKEKKKREVPK 131
Score = 27.8 bits (62), Expect = 1.3
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKK 26
EE ++ +++ + K + K+KKK+
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKR 127
Score = 27.4 bits (61), Expect = 1.5
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+E + +++ + K + K+KKK+
Sbjct: 102 EEESTDETEQEDPPETKTESKEKKKR 127
Score = 27.4 bits (61), Expect = 1.6
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE EE+ + +++ + K + K+KK R
Sbjct: 99 EETEEESTDETEQEDPPETKTESKEKKKR 127
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 31.6 bits (72), Expect = 0.10
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 15/61 (24%)
Query: 14 KKKKKKKKKKKKKKKNRVCIGAWLYVFCL---------------TLPPLFGWSCYIPEGF 58
+K KKKKKK K+ K N++ W++V CL T P FG +C + E
Sbjct: 320 EKAKKKKKKGKEIKPNQIKNHLWVFVNCLIVNPSFDSQTKETLTTKPSKFGSTCELSEKL 379
Query: 59 M 59
+
Sbjct: 380 I 380
Score = 28.9 bits (65), Expect = 0.72
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E +E++ K K K K K +K K KKK
Sbjct: 1150 KEIAKEQRLKSKTKGKASKLRKPKLKKK 1177
Score = 28.5 bits (64), Expect = 1.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE EEK+ K+++ K K K K K +K +
Sbjct: 1144 QEEVEEKEIAKEQRLKSKTKGKASKLRKPK 1173
Score = 26.5 bits (59), Expect = 4.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E++ K+++ K K K K K +K K K
Sbjct: 1148 EEKEIAKEQRLKSKTKGKASKLRKPKLKK 1176
Score = 26.5 bits (59), Expect = 4.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
E++ K K K K K +K K KKK+
Sbjct: 1155 EQRLKSKTKGKASKLRKPKLKKKE 1178
Score = 26.5 bits (59), Expect = 5.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
KKK KK+ + KKKKK + +
Sbjct: 1302 PSSPTKKKVKKRLEGSLAALKKKKKSEKKT 1331
Score = 26.2 bits (58), Expect = 6.5
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNRV 31
K K KKK+KKKKK K KK + V
Sbjct: 1170 RKPKLKKKEKKKKKSSADKSKKASVV 1195
Score = 26.2 bits (58), Expect = 6.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+EE E K+++ K K K K K +K K
Sbjct: 1147 VEEKEIAKEQRLKSKTKGKASKLRKPKL 1174
Score = 26.2 bits (58), Expect = 7.6
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKK 28
K K K +K K KKK+KKKKK
Sbjct: 1162 TKGKASKLRKPKLKKKEKKKKKS 1184
Score = 25.8 bits (57), Expect = 8.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKK 28
K +K K KKK+KKKKK K
Sbjct: 1166 ASKLRKPKLKKKEKKKKKSSADK 1188
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 31.3 bits (71), Expect = 0.10
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+ E+ K +KK KK K K K K K K
Sbjct: 83 KPKEKPKPEKKPKKPKPKPKPKPKPKPKVK 112
Score = 31.3 bits (71), Expect = 0.11
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ K+K K +KK KK K K K K K
Sbjct: 81 PPKPKEKPKPEKKPKKPKPKPKPKPKP 107
Score = 31.3 bits (71), Expect = 0.11
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+ E+K KK K K K K K K K K + +
Sbjct: 87 KPKPEKKPKKPKPKPKPKPKPKPKVKPQPKP 117
Score = 29.8 bits (67), Expect = 0.33
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E K K+K K +KK KK K K K K
Sbjct: 78 EPTPPKPKEKPKPEKKPKKPKPKPKPK 104
Score = 29.8 bits (67), Expect = 0.37
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+ + +KK KK K K K K K K K K
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKPKVK 112
Score = 29.0 bits (65), Expect = 0.64
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++ ++ K K K K K K K K + K K
Sbjct: 92 KKPKKPKPKPKPKPKPKPKVKPQPKPKKP 120
Score = 28.2 bits (63), Expect = 1.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E K K+K K +KK KK K K K
Sbjct: 77 PEPTPPKPKEKPKPEKKPKKPKPKPKP 103
Score = 25.9 bits (57), Expect = 7.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
+ K K K K K K K + K KK
Sbjct: 98 KPKPKPKPKPKPKVKPQPKPKKPP 121
Score = 25.5 bits (56), Expect = 8.0
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+ K K K K K K + K KK K
Sbjct: 100 KPKPKPKPKPKVKPQPKPKKPPSKTAA 126
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 31.2 bits (71), Expect = 0.12
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNR 30
+K+KKK+K+K++ K + KK+ R
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKR 651
Score = 30.0 bits (68), Expect = 0.35
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 5 EEKKKKKKKKKKKK----KKKKKKKKKKNRVCI 33
+KK+K+K++ K KK+K+K KK V I
Sbjct: 629 RKKKRKRKRRFLTKIEGVKKEKRKDKKLKNVII 661
Score = 27.7 bits (62), Expect = 1.8
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
K K K KKKKKK+K +
Sbjct: 522 KAANKISKAAVKVKKKKKKEKSIDLDDD 549
Score = 27.7 bits (62), Expect = 1.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 12 KKKKKKKKKKKKKKKKKNRV 31
KK+KKK+K+K++ K V
Sbjct: 627 KKRKKKRKRKRRFLTKIEGV 646
Score = 27.7 bits (62), Expect = 2.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE K K+ KK K KK + KK+K +
Sbjct: 216 EEAKAKRIKKIKSKKYHRVHKKEKLK 241
Score = 25.8 bits (57), Expect = 8.0
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKK 27
K K KKKKKK+K
Sbjct: 523 AANKISKAAVKVKKKKKKEKSIDLDDD 549
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 31.4 bits (71), Expect = 0.12
Identities = 15/18 (83%), Positives = 17/18 (94%)
Query: 13 KKKKKKKKKKKKKKKKNR 30
+KKKKKKK K+KKKKKNR
Sbjct: 684 RKKKKKKKSKEKKKKKNR 701
Score = 29.8 bits (67), Expect = 0.40
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
+KKKKKKK K+KKKKK ++ K
Sbjct: 684 RKKKKKKKSKEKKKKKNREASK 705
Score = 29.5 bits (66), Expect = 0.46
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKNRV 31
+KKKKKKK K+KKKKK ++ ++
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQI 707
Score = 29.1 bits (65), Expect = 0.65
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
KKKKKKK K+KKKKK ++ K+
Sbjct: 685 KKKKKKKSKEKKKKKNREASKQ 706
Score = 27.1 bits (60), Expect = 3.2
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKK 27
+KKKKKK K+KKKKK ++ K+
Sbjct: 685 KKKKKKKSKEKKKKKNREASKQ 706
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this
family (Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 29.9 bits (68), Expect = 0.12
Identities = 7/27 (25%), Positives = 20/27 (74%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++EEK +++++ K+ K K+++ ++K
Sbjct: 3 RKEEEKAQREEELKRLKNLKREEIEEK 29
Score = 29.2 bits (66), Expect = 0.28
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EE +++++ K+ K K+++ ++K +K
Sbjct: 5 EEEKAQREEELKRLKNLKREEIEEKLEK 32
Score = 28.8 bits (65), Expect = 0.31
Identities = 6/25 (24%), Positives = 18/25 (72%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
E K+++K +++++ K+ K K+++
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREE 25
Score = 27.6 bits (62), Expect = 0.96
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKK 25
E EE+K +++++ K+ K K+++
Sbjct: 2 ERKEEEKAQREEELKRLKNLKREE 25
Score = 27.2 bits (61), Expect = 1.1
Identities = 6/26 (23%), Positives = 19/26 (73%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKK 26
EE++ +++++ K+ K K+++ ++K
Sbjct: 4 KEEEKAQREEELKRLKNLKREEIEEK 29
Score = 26.8 bits (60), Expect = 1.9
Identities = 6/30 (20%), Positives = 22/30 (73%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+E +E++K +++++ K+ K K+++ + ++
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKL 30
Score = 25.3 bits (56), Expect = 5.8
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKK 27
+ +EE K+ K K+++ ++K +K KK
Sbjct: 9 AQREEELKRLKNLKREEIEEKLEKIKK 35
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 30.7 bits (70), Expect = 0.13
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
EE KK+K KK KKKKK KKK +
Sbjct: 181 EENLKKRKDDKKNKKKKKAKKKGR 204
Score = 30.7 bits (70), Expect = 0.16
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
KK+K KK KKKKK KKK +
Sbjct: 185 KKRKDDKKNKKKKKAKKKGRIL 206
Score = 30.0 bits (68), Expect = 0.25
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
EE+ +K+K KK KKKKK KKK +
Sbjct: 181 EENLKKRKDDKKNKKKKKAKKKGRIL 206
Score = 30.0 bits (68), Expect = 0.27
Identities = 10/27 (37%), Positives = 22/27 (81%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E E++++K++++K +KK+K+K+ KK
Sbjct: 5 EALLEQRRRKREQRKARKKQKRKEAKK 31
Score = 29.6 bits (67), Expect = 0.33
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 5/32 (15%)
Query: 5 EEKKKK-----KKKKKKKKKKKKKKKKKKNRV 31
E++KK KK+K KK KKKKK KKK R+
Sbjct: 174 AERQKKREENLKKRKDDKKNKKKKKAKKKGRI 205
Score = 29.6 bits (67), Expect = 0.36
Identities = 10/27 (37%), Positives = 22/27 (81%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E++++K++++K +KK+K+K+ KKK
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDA 35
Score = 28.8 bits (65), Expect = 0.74
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNR 30
D+EK KK K+K+K+KKK KK+ K R
Sbjct: 139 DDEKLLKKALKRKEKQKKKSKKEWKER 165
Score = 26.9 bits (60), Expect = 2.7
Identities = 10/30 (33%), Positives = 22/30 (73%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+E+ K++++K +KK+K+K+ KKK+ +
Sbjct: 8 LEQRRRKREQRKARKKQKRKEAKKKEDAQK 37
Score = 26.5 bits (59), Expect = 4.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E ++K+++ KK+K KK KKKKK K
Sbjct: 173 KAERQKKREENLKKRKDDKKNKKKKKAKK 201
Score = 26.1 bits (58), Expect = 5.3
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+ + +++KK+++ KK+K KK KKK +
Sbjct: 170 EKKKAERQKKREENLKKRKDDKKNKKKKK 198
Score = 25.7 bits (57), Expect = 7.9
Identities = 8/28 (28%), Positives = 22/28 (78%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E +++++K++++K +KK+K+K+ K +
Sbjct: 5 EALLEQRRRKREQRKARKKQKRKEAKKK 32
Score = 25.7 bits (57), Expect = 8.0
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
KK K+K+K+KKK KK+ K++K +V
Sbjct: 145 KKALKRKEKQKKKSKKEWKERKEKV 169
Score = 25.3 bits (56), Expect = 9.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
++ K +KK+K+K+ KKK+ +K + V
Sbjct: 15 REQRKARKKQKRKEAKKKEDAQKSEAEEV 43
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 30.7 bits (70), Expect = 0.13
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCI 33
EE E+KK K++KK K++K+K ++ C+
Sbjct: 96 EEKEKKKAMSKEEKKAIKEEKEKLEEPYGYCL 127
Score = 27.6 bits (62), Expect = 1.5
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
EE+K+KKK K++KK K++K+K
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEK 118
Score = 27.2 bits (61), Expect = 2.1
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
+EEK+KKK K++KK K++K+K
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKL 119
Score = 26.8 bits (60), Expect = 3.2
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 8/41 (19%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAWLYVFCL 42
EE++EKKK K++KK K++K+K ++ Y +CL
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP--------YGYCL 127
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 30.8 bits (70), Expect = 0.14
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+ KK++ + ++KKK+KK K + R
Sbjct: 366 PERDKKERPGRYRRKKKEKKAKSERR 391
Score = 29.7 bits (67), Expect = 0.37
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
E KK++ + ++KKK+KK K ++
Sbjct: 367 ERDKKERPGRYRRKKKEKKAKSERRG 392
Score = 29.7 bits (67), Expect = 0.40
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKN 29
+E+ + ++KKK+KK K +++ +N
Sbjct: 371 KERPGRYRRKKKEKKAKSERRGLQN 395
Score = 29.7 bits (67), Expect = 0.42
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E D++++ + ++KKK+KK K +++
Sbjct: 367 ERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 28.9 bits (65), Expect = 0.64
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
K K ++ KK++ + ++KKK+K
Sbjct: 363 KAKPERDKKERPGRYRRKKKEKKAK 387
Score = 28.9 bits (65), Expect = 0.70
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+E K K K ++ KK++ + ++K +
Sbjct: 354 KEKPPKPPTKAKPERDKKERPGRYRRKKK 382
Score = 28.9 bits (65), Expect = 0.79
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+E+ +EK K K K ++ KK++ + R
Sbjct: 350 IEKLKEKPPKPPTKAKPERDKKERPGRYRR 379
Score = 28.1 bits (63), Expect = 1.3
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E ++K++ + ++KKK+KK K +++ +
Sbjct: 366 PERDKKERPGRYRRKKKEKKAKSERRGLQ 394
Score = 28.1 bits (63), Expect = 1.4
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+KK++ + ++KKK+KK K +++
Sbjct: 368 RDKKERPGRYRRKKKEKKAKSERRGLQ 394
Score = 28.1 bits (63), Expect = 1.4
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
K K ++ KK++ + ++KKK+
Sbjct: 360 PPTKAKPERDKKERPGRYRRKKKE 383
Score = 27.0 bits (60), Expect = 3.4
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
K ++ KK++ + ++KKK+KK
Sbjct: 365 KPERDKKERPGRYRRKKKEKKAKS 388
Score = 26.2 bits (58), Expect = 5.5
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKK 26
+E + ++KKK+KK K +++ +
Sbjct: 370 KKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 26.2 bits (58), Expect = 6.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE E++ +K K+K K K K ++ K
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKE 372
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 31.0 bits (70), Expect = 0.14
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 2 EEDEEKKKKKKKK----KKKKKKKKKKKKKKNRV 31
E K+ KK KK K K K KK KKK V
Sbjct: 140 APPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSV 173
Score = 26.8 bits (59), Expect = 4.1
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
K K KK KKK + K +
Sbjct: 159 PKAPKPKKPKKKGSVSNRSVKMPGI 183
Score = 26.4 bits (58), Expect = 4.4
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
K K K KK KKK +
Sbjct: 157 KVPKAPKPKKPKKKGSVSNRSVK 179
Score = 25.6 bits (56), Expect = 9.5
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRVC 32
K K KK KKK + K
Sbjct: 158 VPKAPKPKKPKKKGSVSNRSVKMPGI 183
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 30.7 bits (70), Expect = 0.15
Identities = 12/27 (44%), Positives = 12/27 (44%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E D KKK K K K KKK K
Sbjct: 71 ESDIPKKKTKTAAKAAAAKAPAKKKLK 97
Score = 28.8 bits (65), Expect = 0.89
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
K KKK K + KK +KKN
Sbjct: 88 AKAPAKKKLKDELDSSKKAEKKN 110
Score = 28.4 bits (64), Expect = 0.98
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E + KKK K K K KKK
Sbjct: 71 ESDIPKKKTKTAAKAAAAKAPAKKKLK 97
Score = 28.0 bits (63), Expect = 1.4
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ K K KKK K + KK
Sbjct: 80 KTAAKAAAAKAPAKKKLKDELDSSKK 105
Score = 28.0 bits (63), Expect = 1.6
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ +KK K K K KKK K
Sbjct: 72 SDIPKKKTKTAAKAAAAKAPAKKKLKD 98
Score = 27.7 bits (62), Expect = 2.2
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
K KKK K + KK +K
Sbjct: 87 AAKAPAKKKLKDELDSSKKAEKK 109
Score = 27.7 bits (62), Expect = 2.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
K KKK K + KK +KK
Sbjct: 89 KAPAKKKLKDELDSSKKAEKKNA 111
Score = 27.3 bits (61), Expect = 2.9
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++ E KKK K K K K
Sbjct: 66 TDDATESDIPKKKTKTAAKAAAAKAPAK 93
Score = 26.9 bits (60), Expect = 3.2
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
+ K K KKK K +
Sbjct: 79 TKTAAKAAAAKAPAKKKLKDELDSS 103
Score = 26.9 bits (60), Expect = 3.8
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNR 30
KKK K + KK +KK K+
Sbjct: 90 APAKKKLKDELDSSKKAEKKNALDKDD 116
Score = 26.9 bits (60), Expect = 4.0
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
K KKK K + KK
Sbjct: 85 AAAAKAPAKKKLKDELDSSKKA 106
Score = 26.9 bits (60), Expect = 4.0
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++ K K K KKK K +
Sbjct: 74 IPKKKTKTAAKAAAAKAPAKKKLKDEL 100
Score = 26.5 bits (59), Expect = 4.9
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
+KK K + KK +KK K
Sbjct: 90 APAKKKLKDELDSSKKAEKKNALDKD 115
Score = 26.5 bits (59), Expect = 5.3
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
K KKK K + KK +
Sbjct: 86 AAAKAPAKKKLKDELDSSKKAE 107
Score = 26.5 bits (59), Expect = 5.6
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
+ KKK K + KK +KK
Sbjct: 87 AAKAPAKKKLKDELDSSKKAEKKNA 111
Score = 26.1 bits (58), Expect = 7.0
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKN 29
KKK K + KK +KK
Sbjct: 89 KAPAKKKLKDELDSSKKAEKKNALDK 114
Score = 26.1 bits (58), Expect = 7.5
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNRVC 32
E+E KKK KK K K K K++
Sbjct: 13 EEEAKKKLKKLAAKSKSKGFITKEEIKEAL 42
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 31.0 bits (71), Expect = 0.16
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
E +K+ K +KK+KKKKK+K+K
Sbjct: 610 IEARKRLNKANEKKEKKKKKQKEKQE 635
Score = 29.0 bits (66), Expect = 0.69
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAWLYV 39
E +K+ K +KK+KKKKK+K+K+ + +G +
Sbjct: 611 EARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKY 645
Score = 28.3 bits (64), Expect = 1.3
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
D EK +K KKKKKKK K K K +
Sbjct: 676 LSDLEKIQKPKKKKKKKPKTVKPKPR 701
Score = 28.3 bits (64), Expect = 1.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ K+ K +KK+KKKKK+K+K++
Sbjct: 610 IEARKRLNKANEKKEKKKKKQKEKQEE 636
Score = 27.9 bits (63), Expect = 1.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
+K +K KKKKKKK K K K +
Sbjct: 680 EKIQKPKKKKKKKPKTVKPKPRT 702
Score = 27.5 bits (62), Expect = 2.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ + +K+ K +KK+KKKKK+K+
Sbjct: 606 AHELIEARKRLNKANEKKEKKKKKQKEK 633
Score = 26.7 bits (60), Expect = 3.7
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 9 KKKKKKKKKKKKKKKKKKKKNR 30
+K +K KKKKKKK K K K R
Sbjct: 680 EKIQKPKKKKKKKPKTVKPKPR 701
Score = 26.7 bits (60), Expect = 4.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKNRV 31
+K +K KKKKKKK K K K V
Sbjct: 680 EKIQKPKKKKKKKPKTVKPKPRTV 703
Score = 25.9 bits (58), Expect = 6.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
+K KKKKKKK K K K + +
Sbjct: 683 QKPKKKKKKKPKTVKPKPRTVSLEL 707
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 30.9 bits (70), Expect = 0.16
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
K K K KKK K K KK K R
Sbjct: 760 TKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 30.9 bits (70), Expect = 0.17
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKN 29
EKK K KKK K K K KK
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKK 771
Score = 29.4 bits (66), Expect = 0.61
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+K K KKK K K K KKK++
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSK 773
Score = 29.4 bits (66), Expect = 0.62
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E + K KKK K K K KKK K +
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKS 776
Score = 28.6 bits (64), Expect = 0.85
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKK 28
K K KKK K K KK KK+
Sbjct: 762 GKAAKTVKKKSKAKSKKTTKKRA 784
Score = 27.9 bits (62), Expect = 1.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+ + KKK K K K KKK K
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKA 774
Score = 26.7 bits (59), Expect = 3.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKK 27
+ K KKK K K KK KK+
Sbjct: 762 GKAAKTVKKKSKAKSKKTTKKRA 784
Score = 26.7 bits (59), Expect = 4.9
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKK 25
K KKK K K KK KK+
Sbjct: 762 GKAAKTVKKKSKAKSKKTTKKRA 784
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 31.0 bits (71), Expect = 0.17
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKN 29
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKI 754
Score = 30.2 bits (69), Expect = 0.30
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 6 EKKKKKKKKKKKKKKKKKKKK 26
EK++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.8 bits (68), Expect = 0.37
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 7 KKKKKKKKKKKKKKKKKKKKK 27
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.0 bits (66), Expect = 0.74
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 5 EEKKKKKKKKKKKKKKKKKKK 25
E+++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.9 bits (63), Expect = 1.6
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 10 KKKKKKKKKKKKKKKKKKKNRV 31
+K++ KKKKK+KK KK + ++
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKI 754
>gnl|CDD|222418 pfam13853, 7tm_4, Olfactory receptor. The members of this family
are transmembrane olfactory receptors.
Length = 142
Score = 29.9 bits (68), Expect = 0.18
Identities = 13/44 (29%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 61 SCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYVFILHVVL 104
SCS T N L F I YV I VL
Sbjct: 47 SCS-----DTYLNELLLLVFSGFLGFGCFVFIVISYVQIFRAVL 85
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 29.9 bits (68), Expect = 0.19
Identities = 10/27 (37%), Positives = 23/27 (85%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKK 27
++ + E+ K++KKK+ K+KK+++K++K
Sbjct: 91 LKLEHERNKQEKKKRSKEKKEEEKERK 117
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 90 amino acids in
length. There are two completely conserved L residues
that may be functionally important.
Length = 70
Score = 28.8 bits (65), Expect = 0.20
Identities = 7/27 (25%), Positives = 24/27 (88%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKK 27
++ +EEK++++++ +K++++K+++K K
Sbjct: 29 LKAEEEKREEEEEARKREERKEREKNK 55
Score = 26.1 bits (58), Expect = 2.0
Identities = 7/26 (26%), Positives = 23/26 (88%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ EE+K++++++ +K++++K+++K K
Sbjct: 30 KAEEEKREEEEEARKREERKEREKNK 55
Score = 25.0 bits (55), Expect = 4.7
Identities = 6/28 (21%), Positives = 25/28 (89%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+E + +++K++++++ +K++++K+++KN
Sbjct: 27 KELKAEEEKREEEEEARKREERKEREKN 54
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 30.6 bits (69), Expect = 0.20
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E + KK K KKK KK KKK+ K+
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKD 170
Score = 29.4 bits (66), Expect = 0.51
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
E K KK K KKK KK KKK+ K+
Sbjct: 141 GIETKAKKGKAKKKTKKSKKKEAKES 166
Score = 29.0 bits (65), Expect = 0.74
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNRV 31
K KKK KK KKK+ K+ K
Sbjct: 149 GKAKKKTKKSKKKEAKESSDKDDEEE 174
Score = 29.0 bits (65), Expect = 0.76
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ + + KK K KKK KK KKK+ K+
Sbjct: 140 LGIETKAKKGKAKKKTKKSKKKEAKESS 167
Score = 28.6 bits (64), Expect = 0.84
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ ++ K KKK KK KKK+ K+ K
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKD 170
Score = 26.0 bits (57), Expect = 7.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKN 29
+ KKK KK KKK+ K+ K +
Sbjct: 149 GKAKKKTKKSKKKEAKESSDKDDEE 173
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 29.0 bits (65), Expect = 0.20
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EE E+ + K K
Sbjct: 48 EEPEDDDDDEDDDDDDDKDDKDDDDDD 74
Score = 28.2 bits (63), Expect = 0.39
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
++D+E K K +
Sbjct: 53 DDDDEDDDDDDDKDDKDDDDDDDDED 78
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 30.3 bits (69), Expect = 0.21
Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 11/41 (26%)
Query: 1 MEEDEEKKKKKKKKKKK-----------KKKKKKKKKKKNR 30
EEDE + ++K++K+KK + ++K+++K++ R
Sbjct: 109 QEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKERER 149
Score = 27.2 bits (61), Expect = 2.4
Identities = 6/25 (24%), Positives = 20/25 (80%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKK 25
MEE+ K +++++++K+K+++++
Sbjct: 47 MEEERLKALAEEEERERKRKEERRE 71
Score = 27.2 bits (61), Expect = 3.0
Identities = 6/39 (15%), Positives = 23/39 (58%), Gaps = 9/39 (23%)
Query: 1 MEEDEEKKKKKKKKKKKKKKK---------KKKKKKKNR 30
++E++ + ++K++K+KK + + ++K++ +
Sbjct: 107 RIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEK 145
Score = 25.6 bits (57), Expect = 7.7
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRVCI 33
EE++ K +++++++K+K+++++ R +
Sbjct: 48 EEERLKALAEEEERERKRKEERREGRAVL 76
Score = 25.6 bits (57), Expect = 9.4
Identities = 7/36 (19%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Query: 1 MEEDEEK-----KKKKKKKKKKKKKKKKKKKKKNRV 31
E+E K ++K +++++++ +++++K++K R
Sbjct: 148 EREEELKILEYQREKAEREEEREAERRERKEEKERE 183
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 30.0 bits (68), Expect = 0.21
Identities = 9/25 (36%), Positives = 24/25 (96%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
D E+K+++K+++K++K++K++K+K+
Sbjct: 13 DIEEKREEKEREKEEKERKEEKEKE 37
Score = 27.3 bits (61), Expect = 1.9
Identities = 10/25 (40%), Positives = 22/25 (88%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKK 26
E+ EEK+++K++K++K++K+K+ K
Sbjct: 16 EKREEKEREKEEKERKEEKEKEWGK 40
Score = 26.5 bits (59), Expect = 2.8
Identities = 7/23 (30%), Positives = 22/23 (95%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
++K+++K+++K++K++K++K+K
Sbjct: 15 EEKREEKEREKEEKERKEEKEKE 37
Score = 25.7 bits (57), Expect = 6.4
Identities = 8/26 (30%), Positives = 23/26 (88%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
E++ ++K+++K++K++K++K+K+ K
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGK 40
Score = 25.7 bits (57), Expect = 6.8
Identities = 6/24 (25%), Positives = 21/24 (87%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
++K+++K+++K++K++K++K+
Sbjct: 14 IEEKREEKEREKEEKERKEEKEKE 37
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 30.2 bits (69), Expect = 0.22
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKK 27
+ EE KK +K +K KKKKK++K
Sbjct: 186 QTEELIKKLLEKPEKPKKKKKRRKG 210
Score = 29.0 bits (66), Expect = 0.59
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKK 28
E+ KK +K +K KKKKK++K
Sbjct: 188 EELIKKLLEKPEKPKKKKKRRKG 210
Score = 27.5 bits (62), Expect = 2.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKK 24
EE +K +K +K KKKKK++K
Sbjct: 188 EELIKKLLEKPEKPKKKKKRRKG 210
Score = 26.3 bits (59), Expect = 5.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 11 KKKKKKKKKKKKKKKKKKN 29
KK +K +K KKKKK++K
Sbjct: 192 KKLLEKPEKPKKKKKRRKG 210
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 30.1 bits (68), Expect = 0.22
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKNR 30
+KKKK + K +K+ K+K+R
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDR 24
Score = 29.7 bits (67), Expect = 0.27
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
KKKK + K +K+ K+K + +
Sbjct: 3 KKKKNRSSNYKVNRKRLKRKDRKKK 27
Score = 28.9 bits (65), Expect = 0.56
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNR 30
+KKKK + K +K+ K+K +
Sbjct: 1 VRKKKKNRSSNYKVNRKRLKRKDRK 25
Score = 27.0 bits (60), Expect = 2.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
K + K +K+ K+K +KKK
Sbjct: 6 KNRSSNYKVNRKRLKRKDRKKKI 28
Score = 26.6 bits (59), Expect = 3.7
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRVCIGAW 36
K +K+ K+K +KKK N + W
Sbjct: 11 NYKVNRKRLKRKDRKKKINIIGNPIIAKNW 40
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 30.2 bits (68), Expect = 0.22
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKN 29
EE+ K K + KKK + KKK +
Sbjct: 153 EEEAKAKAAAEAKKKAAEAKKKAEA 177
Score = 30.2 bits (68), Expect = 0.23
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ EE K K+ + K K + + +KK K
Sbjct: 120 QAEEAKAKQAAEAKAKAEAEAEKKAK 145
Score = 28.6 bits (64), Expect = 0.96
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
+ +E K K+ + K K + + +KK K
Sbjct: 120 QAEEAKAKQAAEAKAKAEAEAEKKAK 145
Score = 28.6 bits (64), Expect = 1.00
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKK 26
+ E KKK + KKK + + K K
Sbjct: 159 KAAAEAKKKAAEAKKKAEAEAKAKA 183
Score = 27.9 bits (62), Expect = 1.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+E K K + KKK + KKK + +
Sbjct: 153 EEEAKAKAAAEAKKKAAEAKKKAEAE 178
Score = 27.5 bits (61), Expect = 1.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 5 EEKKKK-----KKKKKKKKKKKKKKKKKKN 29
EE K K KKK + KKK + + K K
Sbjct: 154 EEAKAKAAAEAKKKAAEAKKKAEAEAKAKA 183
Score = 27.5 bits (61), Expect = 1.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKK 26
E + EKK K++ KK+ +++ K K
Sbjct: 137 EAEAEKKAKEEAKKQAEEEAKAKAA 161
Score = 27.5 bits (61), Expect = 2.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
E E +KK K++ KK+ +++ K K
Sbjct: 136 AEAEAEKKAKEEAKKQAEEEAKAKAA 161
Score = 27.1 bits (60), Expect = 2.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKK 26
E KKK + + K K + K K K
Sbjct: 169 AEAKKKAEAEAKAKAEAKAKAK 190
Score = 27.1 bits (60), Expect = 3.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKK 25
+ E KKK + + K K + K K K
Sbjct: 167 KAAEAKKKAEAEAKAKAEAKAKAK 190
Score = 26.7 bits (59), Expect = 3.5
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKK 26
E K K + + +KK K++ KK+
Sbjct: 130 AEAKAKAEAEAEKKAKEEAKKQ 151
Score = 26.7 bits (59), Expect = 4.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E KKK + KKK + + K K + K
Sbjct: 160 AAAEAKKKAAEAKKKAEAEAKAKAEAK 186
Score = 26.7 bits (59), Expect = 4.3
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
E + +KK K++ KK+ +++ K K
Sbjct: 136 AEAEAEKKAKEEAKKQAEEEAKAK 159
Score = 26.3 bits (58), Expect = 4.7
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E ++ +K K+ ++ K+ ++K+K
Sbjct: 93 ELEQRAAAEKAAKQAEQAAKQAEEKQK 119
Score = 26.3 bits (58), Expect = 4.9
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
+ + K K + + +KK K++ KK+
Sbjct: 128 QAAEAKAKAEAEAEKKAKEEAKKQ 151
Score = 26.0 bits (57), Expect = 6.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
EE KK+ +++ K K + KKK
Sbjct: 146 EEAKKQAEEEAKAKAAAEAKKKAA 169
Score = 26.0 bits (57), Expect = 7.0
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+E+ +K+ +++ K K + KKK + +
Sbjct: 145 KEEAKKQAEEEAKAKAAAEAKKKAAEAKK 173
Score = 26.0 bits (57), Expect = 7.9
Identities = 5/25 (20%), Positives = 15/25 (60%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKN 29
E++ +K K+ ++ K+ ++K+
Sbjct: 95 EQRAAAEKAAKQAEQAAKQAEEKQK 119
Score = 26.0 bits (57), Expect = 8.2
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE + K+ + K K + + +KK K++ +
Sbjct: 122 EEAKAKQAAEAKAKAEAEAEKKAKEEAKK 150
Score = 25.6 bits (56), Expect = 9.4
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKK 27
+ K K + + +KK K++ KK+
Sbjct: 128 QAAEAKAKAEAEAEKKAKEEAKKQ 151
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 30.5 bits (69), Expect = 0.24
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+++ E KKK +KKKKKKK+KK+ K +
Sbjct: 61 DKNNESKKKSEKKKKKKKEKKEPKSEGE 88
Score = 28.9 bits (65), Expect = 0.74
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E ++K +KKKKKKK+KK+ K + + K
Sbjct: 64 NESKKKSEKKKKKKKEKKEPKSEGETKL 91
Score = 28.5 bits (64), Expect = 1.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ +KK +KKKKKKK+KK+ K + +
Sbjct: 64 NESKKKSEKKKKKKKEKKEPKSEGETKL 91
Score = 28.1 bits (63), Expect = 1.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ + +KKKKKKK+KK+ K + + K
Sbjct: 66 SKKKSEKKKKKKKEKKEPKSEGETKLG 92
Score = 28.1 bits (63), Expect = 1.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ +++KKKKK+KK+ K + + K K
Sbjct: 68 KKSEKKKKKKKEKKEPKSEGETKLGFKTP 96
Score = 27.8 bits (62), Expect = 1.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+++ + + + K K KK KK KKK
Sbjct: 80 KKEPKSEGETKLGFKTPKKSKKTKKKPP 107
Score = 27.0 bits (60), Expect = 2.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+ E K + + K K KK KK KKK
Sbjct: 79 EKKEPKSEGETKLGFKTPKKSKKTKKK 105
Score = 27.0 bits (60), Expect = 2.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+E +E K + + K K KK KK KK
Sbjct: 78 KEKKEPKSEGETKLGFKTPKKSKKTKKK 105
Score = 27.0 bits (60), Expect = 3.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++ ++KK+KK+ K + + K K KK
Sbjct: 71 EKKKKKKKEKKEPKSEGETKLGFKTPKK 98
Score = 26.6 bits (59), Expect = 4.8
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E+ + KKK +KKKKKKK+KK+ K +
Sbjct: 60 EDKNNESKKKSEKKKKKKKEKKEPKSEG 87
Score = 26.6 bits (59), Expect = 4.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E ++KKKK+KK+ K + + K K +
Sbjct: 70 SEKKKKKKKEKKEPKSEGETKLGFKTPKK 98
Score = 26.2 bits (58), Expect = 5.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E ++ +KKKKKKK+KK+ K + + K
Sbjct: 65 ESKKKSEKKKKKKKEKKEPKSEGETKLGF 93
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 30.2 bits (68), Expect = 0.25
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAWLY 38
+ + K KK+K KK+K+ K++ G Y
Sbjct: 347 AEAARVKAKKEKLAKKRKQVSKEEAAAIKAAGKAWY 382
Score = 27.5 bits (61), Expect = 2.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAW 36
E K KK+K KK+K+ K++ + AW
Sbjct: 347 AEAARVKAKKEKLAKKRKQVSKEEAAAIKAAGKAW 381
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein
7 (Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 29.6 bits (67), Expect = 0.26
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
E+ K +++KK+K+KKKKKKK+ +
Sbjct: 67 GEEAGKAAEEEKKEKEKKKKKKKELE 92
Score = 28.8 bits (65), Expect = 0.52
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKK 26
EE + +++KK+K+KKKKKKK+ +
Sbjct: 67 GEEAGKAAEEEKKEKEKKKKKKKELE 92
Score = 28.4 bits (64), Expect = 0.73
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+E K +++KK+K+KKKKKKK+ ++
Sbjct: 67 GEEAGKAAEEEKKEKEKKKKKKKELED 93
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 29.8 bits (67), Expect = 0.27
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
M + +EK++KKK K+ K+++K++K+
Sbjct: 183 MLQQKEKEEKKKVKEAKRREKEEKRMAAL 211
Score = 27.9 bits (62), Expect = 1.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
E EEKKK K+ K+++K++K+
Sbjct: 188 EKEEKKKVKEAKRREKEEKRMAALVA 213
Score = 26.3 bits (58), Expect = 5.4
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
+E ++K+K++KKK K+ K+++K++K
Sbjct: 181 QEMLQQKEKEEKKKVKEAKRREKEEK 206
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member
of this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 29.1 bits (66), Expect = 0.28
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKK 27
D+E+++K KKK KK + ++ KKK
Sbjct: 68 DKEERRKDKKKYGKKARLREWKKK 91
Score = 28.3 bits (64), Expect = 0.56
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ EE++K KKK KK + ++ KKK
Sbjct: 68 DKEERRKDKKKYGKKARLREWKKKVF 93
Score = 27.6 bits (62), Expect = 0.84
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
++++++K KKK KK + ++ KKK
Sbjct: 68 DKEERRKDKKKYGKKARLREWKKKVF 93
Score = 26.8 bits (60), Expect = 1.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
+++E +K KKK KK + ++ KKK
Sbjct: 68 DKEERRKDKKKYGKKARLREWKKKVF 93
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 30.1 bits (68), Expect = 0.30
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKK 27
E + E K + K+K K ++ K+K+
Sbjct: 262 FESEYEPINKPVRPKRKTKAQRNKEKR 288
Score = 29.3 bits (66), Expect = 0.48
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E K + K+K K ++ K+K++K+ R
Sbjct: 266 YEPINKPVRPKRKTKAQRNKEKRRKELER 294
Score = 28.9 bits (65), Expect = 0.66
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ E + K + K+K K ++ K+K R
Sbjct: 260 EGFESEYEPINKPVRPKRKTKAQRNKEKRR 289
Score = 28.9 bits (65), Expect = 0.66
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E E K + K+K K ++ K+K++K
Sbjct: 264 SEYEPINKPVRPKRKTKAQRNKEKRRKELE 293
Score = 28.1 bits (63), Expect = 1.5
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E E + K + K+K K ++ K+K+ +
Sbjct: 262 FESEYEPINKPVRPKRKTKAQRNKEKRRK 290
Score = 27.4 bits (61), Expect = 2.5
Identities = 8/26 (30%), Positives = 22/26 (84%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
++++ + +KK+++K++ +KKK K++K
Sbjct: 321 QKEKARARKKEQRKERGEKKKLKRRK 346
Score = 26.6 bits (59), Expect = 3.9
Identities = 9/28 (32%), Positives = 22/28 (78%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ + E+ + +KK+++K++ +KKK K++K
Sbjct: 319 VAQKEKARARKKEQRKERGEKKKLKRRK 346
Score = 26.6 bits (59), Expect = 4.2
Identities = 10/30 (33%), Positives = 22/30 (73%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E+ +KK+++K++ +KKK K++K K++
Sbjct: 323 EKARARKKEQRKERGEKKKLKRRKLGKHKY 352
Score = 26.6 bits (59), Expect = 4.4
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E + + K+K K ++ K+K++K+ +
Sbjct: 266 YEPINKPVRPKRKTKAQRNKEKRRKELERE 295
Score = 26.6 bits (59), Expect = 4.9
Identities = 6/26 (23%), Positives = 20/26 (76%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ ++ K+K++K+ +++ K++K+ K +
Sbjct: 280 KAQRNKEKRRKELEREAKEEKQLKKK 305
Score = 25.8 bits (57), Expect = 8.5
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
K+K++K+ +++ K++K+ KKK
Sbjct: 284 NKEKRRKELEREAKEEKQLKKKLA 307
Score = 25.8 bits (57), Expect = 8.9
Identities = 7/22 (31%), Positives = 17/22 (77%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
K+K K ++ K+K++K+ +++ K
Sbjct: 276 KRKTKAQRNKEKRRKELEREAK 297
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 29.7 bits (67), Expect = 0.31
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
+ K K K K KK +++ K++ K
Sbjct: 100 KPKPKPKPKPVKKVEEQPKREVKP 123
Score = 29.7 bits (67), Expect = 0.40
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E K K K K K K KK +++ K V
Sbjct: 92 IPKPEPKPKPKPKPKPKPVKKVEEQPKREV 121
Score = 28.9 bits (65), Expect = 0.69
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ + E K K K K K K KK +++ K+
Sbjct: 92 IPKPEPKPKPKPKPKPKPVKKVEEQPKR 119
Score = 27.7 bits (62), Expect = 1.7
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ + K K K KK +++ K++ K + R
Sbjct: 100 KPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 26.6 bits (59), Expect = 4.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E + K K K K K KK +++ K++ V
Sbjct: 96 EPKPKPKPKPKPKPVKKVEEQPKREVKPV 124
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The
function is unclear.
Length = 151
Score = 29.6 bits (66), Expect = 0.31
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKN 29
KKKK+K +KK K KKK++K N
Sbjct: 27 KKKKEKVSEKKGKSKKKEEKPN 48
Score = 28.4 bits (63), Expect = 0.71
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 6 EKKKKKKKKKKKKKKKKKKKK 26
+KKKK+K +KK K KKK++K
Sbjct: 26 DKKKKEKVSEKKGKSKKKEEK 46
Score = 26.5 bits (58), Expect = 3.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 9 KKKKKKKKKKKKKKKKKKKK 28
K KKKK+K +KK K KKK
Sbjct: 24 KSDKKKKEKVSEKKGKSKKK 43
Score = 26.5 bits (58), Expect = 4.0
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 5 EEKKKKKKKKKKKKKKKKKKK 25
++KKK+K +KK K KKK++K
Sbjct: 26 DKKKKEKVSEKKGKSKKKEEK 46
Score = 25.7 bits (56), Expect = 7.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
D++KK+K +KK K KKK++K K
Sbjct: 26 DKKKKEKVSEKKGKSKKKEEKPNGK 50
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein
7 (Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal
RNA recognition motif (RRM), also termed RBD (RNA
binding domain) or RNP (ribonucleoprotein domain), and
a C-terminal RRP7 domain.
Length = 118
Score = 29.1 bits (66), Expect = 0.36
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKN 29
++ + K K+K+KKKKKKK+ ++
Sbjct: 67 REEAVEAKAKEKEKKKKKKKELED 90
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 29.8 bits (67), Expect = 0.36
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EED KK KK +KK + K K K
Sbjct: 442 EEDAPKKGKKNQKKGRDKSSKVPSDSK 468
Score = 26.7 bits (59), Expect = 4.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKK 27
+DEE KK KK +KK + K K
Sbjct: 440 DDEEDAPKKGKKNQKKGRDKSSKVP 464
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 29.8 bits (67), Expect = 0.37
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
K K +K KKK K KKKK
Sbjct: 119 KPKTEKLKKKITVNKSTNKKKKKV 142
Score = 29.4 bits (66), Expect = 0.52
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+ K K +K KKK K KKK +V
Sbjct: 116 RKPKPKTEKLKKKITVNKSTNKKKKKV 142
Score = 29.4 bits (66), Expect = 0.57
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
M + + K +K KKK K KKKKK
Sbjct: 115 MRKPKPKTEKLKKKITVNKSTNKKKKKV 142
Score = 28.6 bits (64), Expect = 0.88
Identities = 11/25 (44%), Positives = 11/25 (44%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNR 30
EK KKK K KKKKK
Sbjct: 123 EKLKKKITVNKSTNKKKKKVLSSKD 147
Score = 27.5 bits (61), Expect = 2.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKN 29
E+ KKK K KKKKK K+
Sbjct: 123 EKLKKKITVNKSTNKKKKKVLSSKD 147
Score = 26.3 bits (58), Expect = 6.2
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKK 27
E +KK K KKKKK K
Sbjct: 123 EKLKKKITVNKSTNKKKKKVLSSKD 147
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 29.6 bits (67), Expect = 0.40
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E+E+KKKKKK KKKK KK K
Sbjct: 178 AEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 29.2 bits (66), Expect = 0.45
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
EE+KKKKKKK KKKK KK
Sbjct: 176 NNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 28.8 bits (65), Expect = 0.60
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
E++KKKKKKK KKKK KK
Sbjct: 178 AEEEKKKKKKKSAKKKKLKKVAAVGM 203
Score = 27.7 bits (62), Expect = 1.7
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNRV 31
+++KKKKKKK KKKK KK V
Sbjct: 176 NNAEEEKKKKKKKSAKKKKLKKVAAV 201
Score = 27.7 bits (62), Expect = 1.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EE+++KKKKK KKKK KK K
Sbjct: 178 AEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 27.3 bits (61), Expect = 2.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKK 27
D++K +++KKKKKKK KKKK
Sbjct: 168 AARDKKKSNNAEEEKKKKKKKSAKKKK 194
Score = 27.3 bits (61), Expect = 2.1
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E +KKK +++KKKKKKK KKK
Sbjct: 167 EAARDKKKSNNAEEEKKKKKKKSAKKK 193
Score = 26.5 bits (59), Expect = 4.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ + +++KKKKKKK KKKK KK
Sbjct: 174 KSNNAEEEKKKKKKKSAKKKKLKKVAA 200
Score = 25.7 bits (57), Expect = 7.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++KK +++KKKKKKK KKKK
Sbjct: 167 EAARDKKKSNNAEEEKKKKKKKSAKKKK 194
Score = 25.7 bits (57), Expect = 8.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++ +++KKKKKKK KKKK KK
Sbjct: 172 KKKSNNAEEEKKKKKKKSAKKKKLKKVA 199
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 29.7 bits (66), Expect = 0.42
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKK 26
+ E K + + + + ++K +
Sbjct: 1343 KAAEAAKAEAEAAADEAEAAEEKAE 1367
Score = 29.3 bits (65), Expect = 0.64
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
D KKK ++ KK + K + + +
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEA 1359
Score = 29.0 bits (64), Expect = 0.75
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 5 EEKKKK---KKKKKKKKKKKKKKKKKK 28
EE KK K + + + + ++K
Sbjct: 1339 EEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Score = 29.0 bits (64), Expect = 0.88
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
E + + + ++K + +KKK+
Sbjct: 1351 EAEAAADEAEAAEEKAEAAEKKKE 1374
Score = 28.2 bits (62), Expect = 1.4
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKK 27
E K + + + + ++K +
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAE 1367
Score = 28.2 bits (62), Expect = 1.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E EEK + +KKK++ KKK KKK
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
Score = 28.2 bits (62), Expect = 1.5
Identities = 5/29 (17%), Positives = 16/29 (55%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ + E + + ++K + +KKK++ +
Sbjct: 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
Score = 28.2 bits (62), Expect = 1.7
Identities = 4/27 (14%), Positives = 12/27 (44%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+E KK + K + + + + + +
Sbjct: 1339 EEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Score = 27.4 bits (60), Expect = 2.6
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E + + + ++K + +KKK++ K +
Sbjct: 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
Score = 27.4 bits (60), Expect = 2.7
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ ++K ++ KK + K + + +
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADE 1358
Score = 27.0 bits (59), Expect = 3.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EEDE+K + KK+ ++ KK ++ KKK
Sbjct: 1684 EEDEKKAAEALKKEAEEAKKAEELKKK 1710
Score = 27.0 bits (59), Expect = 3.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
DE KKK ++ KK + KKK ++ KK
Sbjct: 1434 DEAKKKAEEAKKADEAKKKAEEAKK 1458
Score = 27.0 bits (59), Expect = 3.9
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E + + + + + ++K + +KK
Sbjct: 1346 EAAKAEAEAAADEAEAAEEKAEAAEKK 1372
Score = 27.0 bits (59), Expect = 3.9
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
DE KKK ++KKK + KKK ++ KK
Sbjct: 1421 DEAKKKAEEKKKADEAKKKAEEAKK 1445
Score = 27.0 bits (59), Expect = 4.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
DE KK KKK + KKK ++KKK
Sbjct: 1408 DELKKAAAAKKKADEAKKKAEEKKK 1432
Score = 26.6 bits (58), Expect = 4.6
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E + + + + + ++K + +K +
Sbjct: 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
Score = 26.6 bits (58), Expect = 4.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E++EKK + KK+ ++ KK ++ KK
Sbjct: 1683 AEEDEKKAAEALKKEAEEAKKAEELKK 1709
Score = 26.6 bits (58), Expect = 4.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
EED++K + KK KKK + KKK
Sbjct: 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEK 1430
Score = 26.6 bits (58), Expect = 5.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
DE KKK ++ KK ++ KKK ++ KK
Sbjct: 1447 DEAKKKAEEAKKAEEAKKKAEEAKK 1471
Score = 26.3 bits (57), Expect = 6.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+E ++K ++ KKK KKK ++ KK
Sbjct: 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEA 1347
Score = 26.3 bits (57), Expect = 7.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
E E+KK++ KKK KKK ++KKK
Sbjct: 1367 EAAEKKKEEAKKKADAAKKKAEEKKK 1392
Score = 26.3 bits (57), Expect = 7.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EE ++K KKK ++ KK + K +
Sbjct: 1325 EEAKKKADAAKKKAEEAKKAAEAAKAE 1351
Score = 26.3 bits (57), Expect = 7.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
DE KKK ++ KKK + KK + KK
Sbjct: 1486 DEAKKKAEEAKKKADEAKKAAEAKK 1510
Score = 25.9 bits (56), Expect = 8.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
DE KKK ++ KK + KKK ++ KK
Sbjct: 1305 DEAKKKAEEAKKADEAKKKAEEAKK 1329
Score = 25.9 bits (56), Expect = 8.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
DE KKK ++ KK + KKK ++ KK
Sbjct: 1473 DEAKKKAEEAKKADEAKKKAEEAKK 1497
Score = 25.9 bits (56), Expect = 8.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
DE KKK ++ KKK + KK KK
Sbjct: 1394 DEAKKKAEEDKKKADELKKAAAAKK 1418
Score = 25.9 bits (56), Expect = 9.0
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
E EKKK++ KKK KKK ++KKK
Sbjct: 1367 EAAEKKKEEAKKKADAAKKKAEEKKK 1392
Score = 25.9 bits (56), Expect = 9.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+++E KKK KKK ++KKK + KK
Sbjct: 1371 KKKEEAKKKADAAKKKAEEKKKADEAKK 1398
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation
of 60S ribosomal subunits.
Length = 132
Score = 28.9 bits (65), Expect = 0.42
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
++ + +K +KK K++ + +K++ +K RV
Sbjct: 34 KKKLKSEKLEKKAKRQLRAEKRQALEKGRV 63
Score = 27.7 bits (62), Expect = 1.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ KKK K +K +KK K++ + +K+
Sbjct: 31 LKAKKKLKSEKLEKKAKRQLRAEKRQA 57
Score = 27.3 bits (61), Expect = 1.6
Identities = 6/29 (20%), Positives = 18/29 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ ++ K +K +KK K++ + +K++ +
Sbjct: 32 KAKKKLKSEKLEKKAKRQLRAEKRQALEK 60
Score = 26.6 bits (59), Expect = 2.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
KK K KKK K +K +KK K++ R
Sbjct: 28 KKLLKAKKKLKSEKLEKKAKRQLR 51
Score = 26.2 bits (58), Expect = 4.2
Identities = 6/29 (20%), Positives = 19/29 (65%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
++ ++ +KK K++ + +K++ +K + K
Sbjct: 37 LKSEKLEKKAKRQLRAEKRQALEKGRVKP 65
Score = 25.4 bits (56), Expect = 7.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKK 28
+ KK K KKK K +K +KK K
Sbjct: 25 SRSKKLLKAKKKLKSEKLEKKAK 47
>gnl|CDD|220121 pfam09135, Alb1, Alb1. Alb1 is a nuclear shuttling factor
involved in ribosome biogenesis.
Length = 112
Score = 28.6 bits (64), Expect = 0.42
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E +KK++KKK K+ +K++K++KK
Sbjct: 44 EGVSKKKQRKKKPKRLTRKQRKRQKKG 70
Score = 28.2 bits (63), Expect = 0.67
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
++K++KKK K+ +K++K++KK R
Sbjct: 47 SKKKQRKKKPKRLTRKQRKRQKKGLERA 74
Score = 27.1 bits (60), Expect = 1.8
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+E KKK++KKK K+ +K++K++ +
Sbjct: 43 NEGVSKKKQRKKKPKRLTRKQRKRQKK 69
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 29.1 bits (66), Expect = 0.46
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 10 KKKKKKKKKKKKKKKKKKKNR 30
KKKK K+ K K KKK R
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTR 21
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 29.4 bits (66), Expect = 0.48
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 10 KKKKKKKKKKKKKKKKKKKNRVCI 33
K+KKKKK KKKK K N V +
Sbjct: 90 KQKKKKKDKKKKSPKSLLLNFVTV 113
Score = 28.7 bits (64), Expect = 0.67
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 5 EEKKKKKKKKKKKKKKK 21
E K+KKKKK KKKK K
Sbjct: 88 ENKQKKKKKDKKKKSPK 104
Score = 28.7 bits (64), Expect = 0.76
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 10 KKKKKKKKKKKKKKKKKKKN 29
++ K+KKKKK KKKK K+
Sbjct: 86 NQENKQKKKKKDKKKKSPKS 105
Score = 28.7 bits (64), Expect = 0.77
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 3 EDEEKKKKKKKKKKKKK 19
E+++KKKKK KKKK K
Sbjct: 88 ENKQKKKKKDKKKKSPK 104
Score = 28.7 bits (64), Expect = 0.85
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 6 EKKKKKKKKKKKKKKKK 22
E K+KKKKK KKKK K
Sbjct: 88 ENKQKKKKKDKKKKSPK 104
Score = 27.9 bits (62), Expect = 1.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 7 KKKKKKKKKKKKKKKKKKK 25
++ K+KKKKK KKKK K
Sbjct: 86 NQENKQKKKKKDKKKKSPK 104
Score = 27.9 bits (62), Expect = 1.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 8 KKKKKKKKKKKKKKKKKKK 26
++ K+KKKKK KKKK K
Sbjct: 86 NQENKQKKKKKDKKKKSPK 104
Score = 27.9 bits (62), Expect = 1.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 9 KKKKKKKKKKKKKKKKKKK 27
++ K+KKKKK KKKK K
Sbjct: 86 NQENKQKKKKKDKKKKSPK 104
Score = 26.0 bits (57), Expect = 6.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+E E+ ++ K+KKKKK KKKK
Sbjct: 77 KETEDWFSPNQENKQKKKKKDKKKKSP 103
Score = 25.6 bits (56), Expect = 8.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 12 KKKKKKKKKKKKKKKKKNR 30
++ K+KKKKK KKKK +
Sbjct: 86 NQENKQKKKKKDKKKKSPK 104
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 29.4 bits (66), Expect = 0.49
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
E K K + K +K
Sbjct: 220 AAEAKAAAAKAAAEAKAAAEKAAAA 244
Score = 28.6 bits (64), Expect = 0.80
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
E K K + K +K K
Sbjct: 222 EAKAAAAKAAAEAKAAAEKAAAAK 245
Score = 28.6 bits (64), Expect = 0.86
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
E KKK + K K + K
Sbjct: 212 AAEAKKKAAAEAKAAAAKAAAEAKAA 237
Score = 27.1 bits (60), Expect = 2.7
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E + K + K +K K +
Sbjct: 222 EAKAAAAKAAAEAKAAAEKAAAAKAAEK 249
Score = 26.7 bits (59), Expect = 3.8
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
+ +KK + K K + K
Sbjct: 212 AAEAKKKAAAEAKAAAAKAAAEAKAA 237
Score = 26.7 bits (59), Expect = 4.0
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNR 30
K + K +K K +K
Sbjct: 228 AKAAAEAKAAAEKAAAAKAAEKAAA 252
Score = 26.7 bits (59), Expect = 4.0
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E K + K +K K +
Sbjct: 222 EAKAAAAKAAAEAKAAAEKAAAAKAAE 248
Score = 25.9 bits (57), Expect = 7.8
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
E E KKK + KKK + K K
Sbjct: 204 EAEAKKKAAAEAKKKAAAEAKAAAAK 229
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and
possibly also poly(A)+ RNA nuclear export and cell
cycle progression). This domain is specific to the N
terminus of the RNA splicing factor encoded by prp1. It
is involved in mRNA splicing and possibly also
poly(A)and RNA nuclear export and cell cycle
progression.
Length = 131
Score = 28.8 bits (65), Expect = 0.49
Identities = 10/37 (27%), Positives = 24/37 (64%), Gaps = 8/37 (21%)
Query: 2 EEDEE--------KKKKKKKKKKKKKKKKKKKKKKNR 30
+EDEE ++ +++KK++++K+K++ +K R
Sbjct: 58 DEDEEADRIYESIDERMDERRKKRREQKEKEEIEKYR 94
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated
C-terminal domain. This domain is found in a number of
different types of plant proteins including NAM-like
proteins.
Length = 147
Score = 28.9 bits (65), Expect = 0.51
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAWL 37
+ K+K ++ K K KK++ +K+K+K + A
Sbjct: 63 EGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALA 99
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 29.2 bits (66), Expect = 0.53
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIG-AW 36
+E + ++K KK++KK+K K+++K R+ I W
Sbjct: 651 KEFKILDYTEEKTKKEEKKEKNKREEKERIEIAETW 686
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 28.8 bits (65), Expect = 0.55
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKK 27
E KK K K+ +K + KKKKKK
Sbjct: 84 EVSKKAKGKRSRKNQTKKKKKK 105
Score = 28.4 bits (64), Expect = 0.73
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAW 36
E KK K K+ +K + KKKKKK N + AW
Sbjct: 84 EVSKKAKGKRSRKNQTKKKKKKDDNPI---AW 112
>gnl|CDD|226814 COG4379, COG4379, Mu-like prophage tail protein gpP [General
function prediction only].
Length = 386
Score = 29.4 bits (66), Expect = 0.55
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKN 29
E +K+K +K K KK KK
Sbjct: 354 AEAARKRKGDRKGVSHKAKKGGKKNQ 379
Score = 27.1 bits (60), Expect = 2.5
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 3 EDEEKKKK----KKKKKKKKKKKKKKKKKKNRV 31
D KK K+K +K K KK K
Sbjct: 347 VDAYPKKAEAARKRKGDRKGVSHKAKKGGKKNQ 379
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 29.2 bits (66), Expect = 0.55
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 3 EDEEKKKKKKKKKKKKKK---KKKKKKKKN 29
ED EK +K KK K+ K K+K +KKN
Sbjct: 252 EDREKFGSRKGKKDKEGKSTTNKEKARKKN 281
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 29.1 bits (66), Expect = 0.58
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCI 33
E E+KK K++KK K++K K ++ C+
Sbjct: 97 AEKEKKKAMSKEEKKAIKEEKDKLEEPYGYCL 128
Score = 26.0 bits (58), Expect = 5.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
+ EK+KKK K++KK K++K K
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKL 120
Score = 25.6 bits (57), Expect = 8.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E ++EKKK K++KK K++K K ++
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEE 122
>gnl|CDD|226666 COG4209, LplB, ABC-type polysaccharide transport system, permease
component [Carbohydrate transport and metabolism].
Length = 309
Score = 29.2 bits (66), Expect = 0.59
Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 37/109 (33%)
Query: 12 KKKKKKKKKKKKKKKKKNRVCIGAWLYVFCLTLP-----------PLFGWSC----YIP- 55
K KK K KKK+ K+ + L + + LP P+FG Y P
Sbjct: 2 SKTKKGKLMKKKEFLKRQK-----ALLL--MVLPGLIWFLIFKYIPMFGNVIAFKDYRPF 54
Query: 56 EGFMTSCSW---DYMSRTMSNRAFYLYL----------LMFGFILPVAV 91
S W S+ F++ L L+ GF +P+ +
Sbjct: 55 LSITGS-EWVGLKNFKFLFSSPDFFIILRNTLLYSVLFLILGFPVPIIL 102
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 28.7 bits (65), Expect = 0.59
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
K ++++K K+KKKKKKK+ +N
Sbjct: 69 NKAAEERRKLKEKKKKKKKELEN 91
Score = 26.8 bits (60), Expect = 2.5
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 7/33 (21%)
Query: 5 EEKKKKKKKKKKKKKKKKK-------KKKKKNR 30
E+++K K+KKKKKKK+ + ++KKK
Sbjct: 72 AEERRKLKEKKKKKKKELENFYRFQIREKKKEE 104
Score = 26.4 bits (59), Expect = 3.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKK 28
+ K ++++K K+KKKKKKK+
Sbjct: 67 SRNKAAEERRKLKEKKKKKKKEL 89
Score = 26.4 bits (59), Expect = 3.2
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 6/33 (18%)
Query: 2 EEDEEKKKKKKKKKKKKKK------KKKKKKKK 28
E+ K K+KKKKKKK+ + ++KKK++
Sbjct: 72 AEERRKLKEKKKKKKKELENFYRFQIREKKKEE 104
Score = 25.6 bits (57), Expect = 5.3
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 6 EKKKKKKKKKKKKKKKKKKKK 26
+ ++++K K+KKKKKKK+ +
Sbjct: 70 KAAEERRKLKEKKKKKKKELE 90
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 29.4 bits (65), Expect = 0.59
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIG 34
+E K + + KK+ +K KKKK K++ +C G
Sbjct: 314 LEHRAAKAAEAEMKKRAEKPKKKKSKRRGWLCCG 347
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family of
121-amino acid secretory proteins. Laps functions in the
regulation of neuronal cell adhesion and/or movement and
synapse attachment. Laps binds to the ApC/EBP (Aplysia
CCAAT/enhancer binding protein) promoter and activates
the transcription of ApC/EBP mRNA.
Length = 124
Score = 28.7 bits (64), Expect = 0.59
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
+++ KK KKK++KKKKKKK KN
Sbjct: 100 QRQAKKLKKKREKKKKKKKGAKN 122
Score = 27.1 bits (60), Expect = 2.1
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
+++ KK KKK++KKKKKKK +
Sbjct: 99 NQRQAKKLKKKREKKKKKKKGAKNL 123
Score = 26.4 bits (58), Expect = 3.6
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKK 27
M + + KK KKK++KKKKKKK K
Sbjct: 98 MNQRQAKKLKKKREKKKKKKKGAKNLA 124
Score = 25.6 bits (56), Expect = 5.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKK 28
+ KK KKK++KKKKKKK K
Sbjct: 102 QAKKLKKKREKKKKKKKGAKNLA 124
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 29.3 bits (66), Expect = 0.59
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+ K +K K ++ +KK KK + K
Sbjct: 343 QEKATAKGAQKVKNRRARKKAKKARLAK 370
Score = 28.5 bits (64), Expect = 0.98
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
++ K +K K ++ +KK KK + +V
Sbjct: 344 EKATAKGAQKVKNRRARKKAKKARLAKV 371
Score = 27.7 bits (62), Expect = 2.0
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ +K K ++ +KK KK + K +
Sbjct: 348 AKGAQKVKNRRARKKAKKARLAKVAK 373
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 29.3 bits (66), Expect = 0.63
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKK 25
EE E+ K KKKK+KKK+ +K
Sbjct: 416 REELIEEGLLKSKKKKRKKKEWFEK 440
Score = 28.5 bits (64), Expect = 1.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
EE E+ ++ K KKKK+KKK+ +
Sbjct: 413 EEIREELIEEGLLKSKKKKRKKKEWFEK 440
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 29.0 bits (65), Expect = 0.63
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 1 MEEDEEKKKKK------KKKKKKKKKKKKKKKKKNRV 31
E++ +KK K + K++K++K+KK KK+ V
Sbjct: 126 FEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPV 162
Score = 27.9 bits (62), Expect = 1.9
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 7/36 (19%)
Query: 1 MEEDEEKKKKKKK-------KKKKKKKKKKKKKKKN 29
+ ++E KKK K K++K++K+KK KK++
Sbjct: 124 TKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQD 159
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 28.8 bits (65), Expect = 0.69
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCI 33
+ EEKK K++KK K +K+K +++ CI
Sbjct: 96 AQKEEKKAMSKEEKKAIKAEKEKLEEEYGFCI 127
Score = 25.8 bits (57), Expect = 6.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
+ +K++KK K++KK K +K+K
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEK 118
>gnl|CDD|180007 PRK05309, PRK05309, 30S ribosomal protein S11; Validated.
Length = 128
Score = 28.2 bits (64), Expect = 0.69
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 16 KKKKKKKKKKKKKN 29
KKKK KKK KKN
Sbjct: 1 AKKKKTVKKKVKKN 14
Score = 25.5 bits (57), Expect = 5.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 7 KKKKKKKKKKKKK 19
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.5 bits (57), Expect = 5.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 8 KKKKKKKKKKKKK 20
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.5 bits (57), Expect = 5.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 9 KKKKKKKKKKKKK 21
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.5 bits (57), Expect = 5.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 10 KKKKKKKKKKKKK 22
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.5 bits (57), Expect = 5.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 11 KKKKKKKKKKKKK 23
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.5 bits (57), Expect = 5.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 12 KKKKKKKKKKKKK 24
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.5 bits (57), Expect = 5.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 13 KKKKKKKKKKKKK 25
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.5 bits (57), Expect = 5.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 14 KKKKKKKKKKKKK 26
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
Score = 25.5 bits (57), Expect = 5.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 15 KKKKKKKKKKKKK 27
KKKK KKK KK
Sbjct: 1 AKKKKTVKKKVKK 13
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 28.7 bits (64), Expect = 0.72
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E DE KKKK K KK K++ +
Sbjct: 184 ELDESKKKKYIDKYKKLKEEYDSFYPEA 211
>gnl|CDD|200461 cd11322, AmyAc_Glg_BE, Alpha amylase catalytic domain found in the
Glycogen branching enzyme (also called 1,4-alpha-glucan
branching enzyme). The glycogen branching enzyme
catalyzes the third step of glycogen biosynthesis by the
cleavage of an alpha-(1,4)-glucosidic linkage and the
formation a new alpha-(1,6)-branch by subsequent
transfer of cleaved oligosaccharide. They are part of a
group called branching enzymes which catalyze the
formation of alpha-1,6 branch points in either glycogen
or starch. This group includes proteins from bacteria,
eukaryotes, and archaea. The Alpha-amylase family
comprises the largest family of glycoside hydrolases
(GH), with the majority of enzymes acting on starch,
glycogen, and related oligo- and polysaccharides. These
proteins catalyze the transformation of alpha-1,4 and
alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek
key. The majority of the enzymes have an active site
cleft found between domains A and B where a triad of
catalytic residues (Asp, Glu and Asp) performs
catalysis. Other members of this family have lost the
catalytic activity as in the case of the human 4F2hc, or
only have 2 residues that serve as the catalytic
nucleophile and the acid/base, such as Thermus A4
beta-galactosidase with 2 Glu residues (GH42) and human
alpha-galactosidase with 2 Asp residues (GH31). The
family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 402
Score = 29.0 bits (66), Expect = 0.73
Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 31/87 (35%)
Query: 65 DYMSRTMSNRAFYLYLLMFG--------FILPVAVITYCYVFILHVVLAHGKE------- 109
DY R ++ L F FILP++ H + HGK+
Sbjct: 283 DYFKTDPIYRKYHHNKLTFSMMYAYSENFILPLS----------HDEVVHGKKSLLDKMP 332
Query: 110 ------MSNLKTTGSYTLLTPGKKNTF 130
+NL+ Y + PGKK F
Sbjct: 333 GDYWQKFANLRLLYGYMMAHPGKKLLF 359
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 28.9 bits (65), Expect = 0.73
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ K KKKKKKKKK KK K KK
Sbjct: 250 ANPSKVKKKKKKKKKVVHKKYKTKKLT 276
Score = 28.5 bits (64), Expect = 1.0
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+KKKKKKKK KK K KK K R
Sbjct: 255 VKKKKKKKKKVVHKKYKTKKLTGKQRK 281
Score = 26.2 bits (58), Expect = 5.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+ ++KKKKK KK K KK K++K RV
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQRKARV 284
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 29.0 bits (65), Expect = 0.74
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 18 KKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFY 77
K K K V + W+ T P LF ++ C Y ++TM+ + F
Sbjct: 145 KSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHE-TLICCMFYNNKTMNWKLFI 203
Query: 78 LYLL-MFGFILPVAVITYCYVFILHVVLAHGKEMSNLKT 115
+ + + G ++P+ ++ YCY IL + K N K
Sbjct: 204 NFEINIIGMLIPLTILLYCYSKILITLKGINKSKKNKKA 242
>gnl|CDD|217291 pfam02927, CelD_N, N-terminal ig-like domain of cellulase.
Length = 90
Score = 27.7 bits (62), Expect = 0.79
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 111 SNLKTTGSYTLLTPG 125
S+L T G+Y L G
Sbjct: 72 SDLTTPGTYYLKVGG 86
>gnl|CDD|241400 cd13246, PH_Scd1, Shape and Conjugation Deficiency 1 Pleckstrin
homology (PH) domain. Fission yeast Scd1 is an
exchange factor for Cdc42 and an effector of Ras1, the
homolog of the human H-Ras. Scd2/Bem1 mediates Cdc42
activation by binding to Scd1/Cdc24 and to Cdc42. Ras1
regulates Scd1/Cdc24/Ral1, which is a putative guanine
nucleotide exchange factor for Cdc42, a member of the
Rho family of Ras-like proteins. Cdc42 then activates
the Shk1/Orb2 protein kinase. Scd1 interacts with Klp5
and Klp6 kinesins to mediate cytokinesis. PH domains
have diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They
share little sequence conservation, but all have a
common fold, which is electrostatically polarized. Less
than 10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved
across all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 148
Score = 28.4 bits (64), Expect = 0.80
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRVCI 33
E KKKKKK K K KKKKK
Sbjct: 62 EVKKKKKKSSLKSKSSSSSKKKKKKGPLQ 90
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 28.9 bits (65), Expect = 0.80
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E D EK + K+KKK+KKK++KKKK+
Sbjct: 318 ERDNEKLDAEVKEKKKEKKKEEKKKKQ 344
Score = 28.1 bits (63), Expect = 1.4
Identities = 13/29 (44%), Positives = 23/29 (79%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
++E+ + K+KKK+KKK++KKKK+ R+
Sbjct: 320 DNEKLDAEVKEKKKEKKKEEKKKKQIERL 348
Score = 25.8 bits (57), Expect = 7.8
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+ + +K + K+KKK+KKK++KKK ++
Sbjct: 318 ERDNEKLDAEVKEKKKEKKKEEKKKKQI 345
>gnl|CDD|219761 pfam08243, SPT2, SPT2 chromatin protein. This family includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 116
Score = 27.9 bits (62), Expect = 0.81
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKK 24
EDE + ++++++K+KKKKK K
Sbjct: 94 LEDERELAREEEEEKRKKKKKNK 116
Score = 25.6 bits (56), Expect = 6.3
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKK 23
+E++ E ++++++K+KKKKK K
Sbjct: 94 LEDERELAREEEEEKRKKKKKNK 116
Score = 25.2 bits (55), Expect = 7.8
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKK 26
M E++++ ++++++K+KKKKK K
Sbjct: 91 MARLEDERELAREEEEEKRKKKKKNK 116
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 27.7 bits (62), Expect = 0.87
Identities = 7/24 (29%), Positives = 19/24 (79%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKK 24
ED E+++ +K+++++K+ +K+K
Sbjct: 83 RLEDREEERLEKEEEREKRARKRK 106
>gnl|CDD|219783 pfam08297, U3_snoRNA_assoc, U3 snoRNA associated. This family of
proteins is associated with U3 snoRNA. U3 snoRNA is
required for nucleolar processing of pre-18S ribosomal
RNA.
Length = 87
Score = 27.4 bits (61), Expect = 0.90
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EE +++KKK K + KK +K+ K KK
Sbjct: 26 EELKKQKKKNKLRFLKKLEKRPKDVKK 52
Score = 25.8 bits (57), Expect = 3.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E EE+ KK+KKK K + KK +K+ K
Sbjct: 22 ESYEEELKKQKKKNKLRFLKKLEKRPK 48
Score = 25.5 bits (56), Expect = 5.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+E KK+KKK K + KK +K+ K +
Sbjct: 24 YEEELKKQKKKNKLRFLKKLEKRPKDVKK 52
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 28.5 bits (64), Expect = 0.90
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 10 KKKKKKKKKKKKKKKKKKKN 29
K+K++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLKL 375
Score = 28.5 bits (64), Expect = 1.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 6 EKKKKKKKKKKKKKKKKKKK 25
K+K++ KK+KKKK KK K
Sbjct: 355 PKRKREGDKKQKKKKSKKLK 374
Score = 28.1 bits (63), Expect = 1.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 8 KKKKKKKKKKKKKKKKKKK 26
K+K++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
Score = 28.1 bits (63), Expect = 1.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 9 KKKKKKKKKKKKKKKKKKK 27
K+K++ KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.
Length = 64
Score = 27.1 bits (61), Expect = 0.93
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNR 30
EK +K+K+KK +K+++KK
Sbjct: 39 EKPSEKRKRKKAAARKRRRKKLARE 63
Score = 24.4 bits (54), Expect = 7.8
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 5 EEKKKKKKKKKKKKKKKKKK 24
E++K+KK +K+++KK +
Sbjct: 43 EKRKRKKAAARKRRRKKLAR 62
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4;
Provisional.
Length = 191
Score = 28.2 bits (63), Expect = 0.94
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
KKKK +KKK KK KKKKK
Sbjct: 51 SKKKKTTPRKKKTTKKTKKKKK 72
Score = 27.9 bits (62), Expect = 1.3
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
KKKK +KKK KK KKKKK+
Sbjct: 52 KKKKTTPRKKKTTKKTKKKKKE 73
Score = 27.9 bits (62), Expect = 1.3
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
KKK +KKK KK KKKKK+K V
Sbjct: 53 KKKTTPRKKKTTKKTKKKKKEKEEV 77
Score = 27.1 bits (60), Expect = 2.1
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
KK KKKK +KKK KK KK
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKK 69
Score = 27.1 bits (60), Expect = 2.3
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
K KKKK +KKK KK KKK
Sbjct: 49 KTSKKKKTTPRKKKTTKKTKKK 70
Score = 27.1 bits (60), Expect = 2.5
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
ED E KK KKKK +KKK KK
Sbjct: 41 EDVEIPSKKTSKKKKTTPRKKKTTKK 66
>gnl|CDD|240532 cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. This
family might function as a translocase for
lipopolysaccharides and participate in the biosynthesis
of cell wall components such as teichuronic acid. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 406
Score = 28.6 bits (65), Expect = 0.95
Identities = 8/63 (12%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 46 PLFGWSC--YIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYVFILHVV 103
P+ + + + ++ ++ L L+ + +I Y I+ V
Sbjct: 317 PILQILALAGLFQPLSSLNGSLLLALGRTDLLLKLGLIKAVLTVLALLIGIPY-GIIGVA 375
Query: 104 LAH 106
+A+
Sbjct: 376 IAY 378
>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein is a
heteromeric structure-specific endonuclease found in
fungi. Slx4 with Slx1 acts as a nuclease on branched
DNA substrates, particularly simple-Y, 5'-flap, or
replication fork structures by cleaving the strand
bearing the 5' non-homologous arm at the branch
junction and thus generating ligatable nicked products
from 5'-flap or replication fork substrates.
Length = 627
Score = 28.8 bits (64), Expect = 0.95
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ KKKK KK K +K+ K+K KK +
Sbjct: 69 KRVPKKKKIKKPKLRKRTKRKNKKIK 94
Score = 28.4 bits (63), Expect = 1.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
K+ KKKK KK K +K+ K+K ++
Sbjct: 69 KRVPKKKKIKKPKLRKRTKRKNKKI 93
Score = 27.2 bits (60), Expect = 3.2
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
KKKK KK K +K+ K+K KK K+
Sbjct: 73 KKKKIKKPKLRKRTKRKNKKIKS 95
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 28.5 bits (64), Expect = 0.95
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E+ E +++ KK K KKKK K K V
Sbjct: 201 EQRLELQRELMKKGKGKKKKIVKDKDGKVV 230
Score = 26.6 bits (59), Expect = 4.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKK 26
+E E KK K KKKK K K K
Sbjct: 204 LELQRELMKKGKGKKKKIVKDKDGKV 229
Score = 25.4 bits (56), Expect = 9.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ +++ KK K KKKK K K K
Sbjct: 202 QRLELQRELMKKGKGKKKKIVKDKDGKV 229
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 28.0 bits (63), Expect = 0.97
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
++ E +K K ++K + + +K +K+
Sbjct: 31 KKSEAEKLAKMSAEEKAEYELEKLEKEL 58
Score = 26.8 bits (60), Expect = 2.0
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+ E +K K ++K + + +K +K
Sbjct: 30 EKKSEAEKLAKMSAEEKAEYELEKLEK 56
Score = 26.5 bits (59), Expect = 2.8
Identities = 4/30 (13%), Positives = 17/30 (56%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
M +E+ + + +K +K+ ++ + + ++
Sbjct: 41 MSAEEKAEYELEKLEKELEELEAELARREL 70
Score = 26.1 bits (58), Expect = 4.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKK 28
K+K K +KK+++KK + +K K
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAK 40
Score = 25.7 bits (57), Expect = 5.2
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++ EEKK + +K K ++K + + +
Sbjct: 26 KKQEEKKSEAEKLAKMSAEEKAEYELEKL 54
Score = 25.7 bits (57), Expect = 5.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKN 29
D+E K K+K K +KK+++KK +
Sbjct: 10 DKEVDKAIAKEKAKWEKKQEEKKSEA 35
Score = 25.7 bits (57), Expect = 6.3
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKN 29
++K K +KK+++KK + +K K +
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMS 42
Score = 25.3 bits (56), Expect = 7.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKK 26
+EK K +KK+++KK + +K K
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAK 40
Score = 25.3 bits (56), Expect = 8.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
E D+ K+K K +KK+++KK + +K
Sbjct: 12 EVDKAIAKEKAKWEKKQEEKKSEAEK 37
Score = 25.3 bits (56), Expect = 8.2
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+ + +KK+++KK + +K K ++K
Sbjct: 20 EKAKWEKKQEEKKSEAEKLAKMSAEEK 46
Score = 25.3 bits (56), Expect = 8.4
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EE + + +K K ++K + + +K +
Sbjct: 29 EEKKSEAEKLAKMSAEEKAEYELEKLE 55
Score = 25.3 bits (56), Expect = 8.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E +EEK K+ K K+K K +KK
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQE 29
Score = 25.3 bits (56), Expect = 8.8
Identities = 3/30 (10%), Positives = 18/30 (60%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E++ + + +K +K+ ++ + + +++ +
Sbjct: 43 AEEKAEYELEKLEKELEELEAELARRELKA 72
Score = 24.9 bits (55), Expect = 10.0
Identities = 5/27 (18%), Positives = 17/27 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ ++++++KK + +K K ++K +
Sbjct: 23 KWEKKQEEKKSEAEKLAKMSAEEKAEY 49
>gnl|CDD|218602 pfam05478, Prominin, Prominin. The prominins are an emerging
family of proteins that among the multispan membrane
proteins display a novel topology. Mouse prominin and
human prominin (mouse)-like 1 (PROML1) are predicted to
contain five membrane spanning domains, with an
N-terminal domain exposed to the extracellular space
followed by four, alternating small cytoplasmic and
large extracellular, loops and a cytoplasmic C-terminal
domain. The exact function of prominin is unknown
although in humans defects in PROM1, the gene coding for
prominin, cause retinal degeneration.
Length = 807
Score = 28.4 bits (64), Expect = 0.98
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 21 KKKKKKKKNRVCIGAWLYV--FCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSN 73
+ ++K KKN C + L V T+ LFG C F+T+ Y + N
Sbjct: 127 RMQQKDKKNDPCKRSCLGVCLLLTTVLLLFGVVC----AFVTN---QYTQTGVKN 174
>gnl|CDD|234534 TIGR04286, MSEP-CTERM, MSEP-CTERM protein. Members of this protein
family average over 900 residues in length and appear to
have multiple membrane-spanning helices in the
N-terminal half. The extreme C-terminal region consists
of a motif with consensus sequence MSEP, then a
transmembrane alpha helix, then a short region with
several basic residues. This region, hereby dubbed
MSEP-CTERM, resembles other putative sorting signals
associated with the archaeosortase/exosortase protein
family (see TIGR04178). Genes for all members of this
family are found next to a gene for exosortase K.
Length = 920
Score = 28.5 bits (64), Expect = 0.99
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 23 KKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLM 82
KK ++ + WL + L + + + E + S D+M +++ + LYLLM
Sbjct: 61 YKKIREKNISKVYWLLLLGLYICFSYFM-IALYENLIPSDIPDWMISSINFPLYPLYLLM 119
Query: 83 FGFI 86
Sbjct: 120 PAIF 123
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 27.7 bits (62), Expect = 1.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+KK KK K KK K KK+K + V
Sbjct: 6 KAKKKAKKAAKAAKKGVKVKKRKVRTSV 33
Score = 27.0 bits (60), Expect = 2.6
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNRV 31
KK KKK KK K KK K KK +V
Sbjct: 4 AKKAKKKAKKAAKAAKKGVKVKKRKV 29
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 28.7 bits (65), Expect = 1.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
EEDE+ K+ + KK + +KKK+ K
Sbjct: 181 EEDEKLAKEALEAMKKLEAEKKKQSKNF 208
Score = 26.7 bits (60), Expect = 3.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
EE++EK K+ + KK + +KKK+ KN
Sbjct: 180 EEEDEKLAKEALEAMKKLEAEKKKQSKN 207
>gnl|CDD|113585 pfam04819, DUF716, Family of unknown function (DUF716). This
family is equally distributed in both metazoa and
plants. Annotation associated with a member from
Nicotiana tabacum suggest that it may be involved in
response to viral attack in plants. However, no clear
function has been assigned to this family.
Length = 137
Score = 27.7 bits (62), Expect = 1.2
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 34 GAWLYVFCLTL-PPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAF----YLYLLMFGFILP 88
G W L PP C++ E C WD +AF + + L IL
Sbjct: 74 GTWFLQIGFMLYPPSLPKGCHLHEESSVGCRWDDAD--HRAKAFATLQFCWHLALALIL- 130
Query: 89 VAVITYCYVF 98
+ Y F
Sbjct: 131 ---VAGLYGF 137
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 28.2 bits (63), Expect = 1.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 6 EKKKKKKKKKKKKKKKKKKKK 26
E +KK+K+KK++ K +KK+
Sbjct: 159 ELLRKKEKEKKEQLKIQKKQS 179
Score = 25.9 bits (57), Expect = 7.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 5 EEKKKKKKKKKKKKKKKKKKK 25
E +KK+K+KK++ K +KK+
Sbjct: 159 ELLRKKEKEKKEQLKIQKKQS 179
Score = 25.5 bits (56), Expect = 8.3
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 8 KKKKKKKKKKKKKKKKKKKK 27
+KK+K+KK++ K +KK+
Sbjct: 160 LLRKKEKEKKEQLKIQKKQS 179
Score = 25.5 bits (56), Expect = 8.3
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 9 KKKKKKKKKKKKKKKKKKKK 28
+KK+K+KK++ K +KK+
Sbjct: 160 LLRKKEKEKKEQLKIQKKQS 179
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 27.4 bits (61), Expect = 1.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNR 30
+KK+KK + + KK KK+ R
Sbjct: 79 KKKRKKSRHVSSRSAKKISAKKRRR 103
Score = 25.8 bits (57), Expect = 5.0
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
++K+KK + + KK KK++
Sbjct: 79 KKKRKKSRHVSSRSAKKISAKKRRRS 104
Score = 25.5 bits (56), Expect = 7.3
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 7 KKKKKKKK---KKKKKKKKKKKKKKNR 30
KKK+KK + + KK KK++++
Sbjct: 79 KKKRKKSRHVSSRSAKKISAKKRRRSS 105
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase.
Length = 763
Score = 28.3 bits (63), Expect = 1.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 2 EEDEEKKKKKKKKKKKKKKK 21
E + E K KK KK KKKK
Sbjct: 239 EAENEAGKSDKKDKKSKKKK 258
Score = 26.8 bits (59), Expect = 4.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 4 DEEKKKKKKKKKKKKKKKKK 23
+ E + K KK KK KKKK
Sbjct: 239 EAENEAGKSDKKDKKSKKKK 258
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 28.1 bits (62), Expect = 1.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 5 EEKKKKKKKKKKKK--KKKKKKKKKKNRVCI 33
EE+K K+ K K K +K +K +K+K I
Sbjct: 388 EERKAKRVAKIKSKTYRKIRKNRKEKEMALI 418
Score = 27.4 bits (60), Expect = 2.4
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+ K+ KKK ++ ++ K+ KKK
Sbjct: 640 KMRRIKRIKKKAYRRIRRDKRLKKKMPEEE 669
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 28.1 bits (63), Expect = 1.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
K+K KK KK KK+K+K++
Sbjct: 226 KRKAPKKVAKKVAAAKKRKQKRSPP 250
Score = 27.0 bits (60), Expect = 3.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
+K+K KK KK KK+K+K
Sbjct: 225 RKRKAPKKVAKKVAAAKKRKQK 246
Score = 26.2 bits (58), Expect = 5.5
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ +K+K KK KK KK
Sbjct: 216 PTPQSSSPSRKRKAPKKVAKKVAAAKKR 243
Score = 25.8 bits (57), Expect = 7.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNR 30
+K+K KK KK KK+K +
Sbjct: 222 SPSRKRKAPKKVAKKVAAAKKRKQK 246
Score = 25.4 bits (56), Expect = 9.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKNR 30
+K+K KK KK KK+K+ R
Sbjct: 225 RKRKAPKKVAKKVAAAKKRKQKR 247
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 28.1 bits (63), Expect = 1.3
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E EEK+K+KK KK+ K++++ + K+
Sbjct: 392 EREEKEKEKKAKKEGKEERRIHFQNKS 418
Score = 26.1 bits (58), Expect = 5.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKK 26
E++EK+KK KK+ K++++ + K
Sbjct: 392 EREEKEKEKKAKKEGKEERRIHFQNK 417
>gnl|CDD|222466 pfam13945, NST1, Splicing factor, salt tolerance regulator. NST1
is a family of proteins that seem to be involved,
directly or indirectly, in the salt sensitivity of some
cellular functions in yeast. These proteins also
interact with the splicing factor Msl1p.
Length = 189
Score = 27.6 bits (61), Expect = 1.4
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 17 KKKKKKKKKKKKNRVCIGA 35
K KKKKKK+ K A
Sbjct: 32 KSKKKKKKRSKATSPSHNA 50
Score = 26.4 bits (58), Expect = 4.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 6 EKKKKKKKKKKKKKK 20
K KKKKKK+ K
Sbjct: 31 SKSKKKKKKRSKATS 45
Score = 26.0 bits (57), Expect = 4.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 15 KKKKKKKKKKKKKKN 29
K KKKKKK+ K
Sbjct: 32 KSKKKKKKRSKATSP 46
Score = 26.0 bits (57), Expect = 5.1
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 2 EEDEEKKKKKKKKKKKKKKKK 22
D K KKKKKK+ K
Sbjct: 25 HNDSSSSKSKKKKKKRSKATS 45
Score = 25.3 bits (55), Expect = 9.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 10 KKKKKKKKKKKKKK 23
K KKKKKK+ K
Sbjct: 32 KSKKKKKKRSKATS 45
Score = 25.3 bits (55), Expect = 9.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 11 KKKKKKKKKKKKKK 24
K KKKKKK+ K
Sbjct: 32 KSKKKKKKRSKATS 45
Score = 25.3 bits (55), Expect = 9.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 12 KKKKKKKKKKKKKK 25
K KKKKKK+ K
Sbjct: 32 KSKKKKKKRSKATS 45
Score = 25.3 bits (55), Expect = 9.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 13 KKKKKKKKKKKKKK 26
K KKKKKK+ K
Sbjct: 32 KSKKKKKKRSKATS 45
Score = 25.3 bits (55), Expect = 9.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 14 KKKKKKKKKKKKKK 27
K KKKKKK+ K
Sbjct: 32 KSKKKKKKRSKATS 45
>gnl|CDD|223941 COG1009, NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain
L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy
production and conversion / Inorganic ion transport and
metabolism].
Length = 606
Score = 28.0 bits (63), Expect = 1.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 63 SWDYMSRTMSNRAFYLYLLMFGF 85
S YMS F+ YLL+F
Sbjct: 94 SIGYMSHDPGLGRFFAYLLLFTG 116
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 28.2 bits (62), Expect = 1.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 4 DEEKKKKKKKKKKKK----KKKKKKKKKKN 29
D++ KKKKKKKKK K K++ K
Sbjct: 102 DDDTPSKKKKKKKKKGWFWAKSKQESKTIE 131
Score = 27.9 bits (61), Expect = 2.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ +D+ KKKKKKKKK K K++
Sbjct: 100 ITDDDTPSKKKKKKKKKGWFWAKSKQES 127
Score = 27.5 bits (60), Expect = 2.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++D KKKKKKKKK K K++ K
Sbjct: 102 DDDTPSKKKKKKKKKGWFWAKSKQESK 128
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 28.0 bits (63), Expect = 1.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKK 25
E EE ++KK++KKK++++ K K
Sbjct: 278 EERQEEAQEKKEEKKKEEREAKLAK 302
Score = 27.2 bits (61), Expect = 2.4
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKK 26
EE +E+ ++KK++KKK++++ K K
Sbjct: 277 EEERQEEAQEKKEEKKKEEREAKLAK 302
Score = 26.8 bits (60), Expect = 3.3
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 12/41 (29%)
Query: 2 EEDEEKKKKKKKKKK------------KKKKKKKKKKKKNR 30
EE +EKK++KKK+++ +K ++K++KK+ +
Sbjct: 282 EEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 26.4 bits (59), Expect = 5.4
Identities = 9/28 (32%), Positives = 21/28 (75%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+E +++ ++KK++KKK++++ K K
Sbjct: 275 AAEEERQEEAQEKKEEKKKEEREAKLAK 302
Score = 25.7 bits (57), Expect = 7.6
Identities = 8/28 (28%), Positives = 22/28 (78%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE+++++ ++KK++KKK++++ K +
Sbjct: 275 AAEEERQEEAQEKKEEKKKEEREAKLAK 302
Score = 25.7 bits (57), Expect = 8.1
Identities = 8/28 (28%), Positives = 21/28 (75%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+EE++++ ++KK++KKK++++ K
Sbjct: 275 AAEEERQEEAQEKKEEKKKEEREAKLAK 302
>gnl|CDD|218078 pfam04419, 4F5, 4F5 protein family. Members of this family are
short proteins that are rich in aspartate, glutamate,
lysine and arginine. Although the function of these
proteins is unknown, they are found to be ubiquitously
expressed.
Length = 38
Score = 25.6 bits (57), Expect = 1.5
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
KK KKKKK K + K K
Sbjct: 16 KKAAKKKKKGAKSQLKAAAKALE 38
Score = 24.5 bits (54), Expect = 4.8
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+ E+ KK KKKKK K + K
Sbjct: 8 EQARERNAKKAAKKKKKGAKSQLKAAAKA 36
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 27.8 bits (62), Expect = 1.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRVCIGA 35
KKK+ +K KK KKK K ++
Sbjct: 52 KKKRPTTPRKPATTKKSKKKDKEKLTEEE 80
Score = 27.4 bits (61), Expect = 1.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKN 29
++K+ +K KK KKK K+K
Sbjct: 52 KKKRPTTPRKPATTKKSKKKDKEKL 76
Score = 26.3 bits (58), Expect = 4.4
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNR 30
K+ KKK+ +K KK KK
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKD 72
Score = 26.3 bits (58), Expect = 5.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
++ KKK+ +K KK KKK++
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDK 73
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 26.9 bits (60), Expect = 1.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
E KK++K K ++ K +K++ K K R
Sbjct: 38 EYKKQQKAKAREADKARKQQLKAKQR 63
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein
7 homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 27.2 bits (61), Expect = 1.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKN 29
K+ K +K+KKKKKKK+ KN
Sbjct: 65 ARKESVAAKAAEKEKKKKKKKELKN 89
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 28.1 bits (62), Expect = 1.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKK 23
+ EE+K +KK +K++K KK
Sbjct: 126 SDVEEEKTEKKVRKRRKVKKMD 147
Score = 27.7 bits (61), Expect = 1.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKK 24
D E++K +KK +K++K KK
Sbjct: 126 SDVEEEKTEKKVRKRRKVKKMD 147
Score = 26.9 bits (59), Expect = 3.2
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E DE KKK + K+ KK +
Sbjct: 61 EPDENGAVSKKKPTRSVKRATKKTVVEI 88
Score = 25.8 bits (56), Expect = 8.6
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 5 EEKKKKKKKKKKKKKKKKKKK 25
+ +++K +KK +K++K KK
Sbjct: 127 DVEEEKTEKKVRKRRKVKKMD 147
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 27.7 bits (62), Expect = 1.7
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
D+ K KKK +K + K K
Sbjct: 188 FLVDDAAKGGSKKKGRKGGAARGKPNAK 215
Score = 26.2 bits (58), Expect = 5.0
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++ K KKK +K + K R
Sbjct: 189 LVDDAAKGGSKKKGRKGGAARGKPNAKR 216
Score = 25.4 bits (56), Expect = 9.2
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 1 MEEDEEKKKKKKKK------KKKKKKKKKKKKKK 28
+ +D K KKK + K K+K K K
Sbjct: 189 LVDDAAKGGSKKKGRKGGAARGKPNAKRKAKDAK 222
>gnl|CDD|182308 PRK10209, PRK10209, acid-resistance membrane protein;
Provisional.
Length = 190
Score = 27.6 bits (62), Expect = 1.7
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 39 VFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTM-SNRAFYLYLLMFGFILPVAVITYCYV 97
+ CL+ P + G + G + CS + + +NR+ + ++ G +L VA + Y
Sbjct: 36 LLCLSFPFVSGDALSTVVGILLICSGIALIVGLFANRSHNFWPMLSGILLGVAYLVLGYF 95
Query: 98 FI 99
FI
Sbjct: 96 FI 97
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 27.7 bits (62), Expect = 1.7
Identities = 9/30 (30%), Positives = 25/30 (83%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+EE E +++++K+++KK+ K++K+++K+
Sbjct: 178 LEEAERRRREEKERRKKQDKERKQREKETA 207
Score = 26.6 bits (59), Expect = 4.1
Identities = 9/23 (39%), Positives = 20/23 (86%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKK 27
EEK+++KK+ K++K+++K+ +K
Sbjct: 187 EEKERRKKQDKERKQREKETAEK 209
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 27.8 bits (62), Expect = 1.7
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E + ++ KKK++ + KKKK+ +
Sbjct: 79 ELSASSLEAEQAKKKEEAEAKKKKEME 105
Score = 27.0 bits (60), Expect = 2.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+E E + ++ KKK++ + KKKK
Sbjct: 76 DEKELSASSLEAEQAKKKEEAEAKKKKEM 104
Score = 26.6 bits (59), Expect = 3.9
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E E+ KKK++ + KKKK+ ++ K + ++
Sbjct: 85 LEAEQAKKKEEAEAKKKKEMEELKAVQKKI 114
Score = 26.2 bits (58), Expect = 5.1
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+ ++K++ + KKKK+ ++ K +KK ++
Sbjct: 88 EQAKKKEEAEAKKKKEMEELKAVQKKIDQ 116
Score = 25.9 bits (57), Expect = 7.2
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+E + ++ KKK++ + KKKK+
Sbjct: 78 KELSASSLEAEQAKKKEEAEAKKKKEME 105
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 27.8 bits (63), Expect = 1.7
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++ +EE K++ + K+ ++K+KK
Sbjct: 510 IDVEEEIAYIKEQMEGSAPKEPEEKEKK 537
Score = 27.5 bits (62), Expect = 2.6
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCI 33
EE K++ + K+ ++K+KK +K + I
Sbjct: 514 EEIAYIKEQMEGSAPKEPEEKEKKPEKPEITI 545
Score = 26.3 bits (59), Expect = 5.2
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCI 33
E+E K++ + K+ ++K+KK + I
Sbjct: 512 VEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEI 543
Score = 26.3 bits (59), Expect = 5.2
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+EE+ K++ + K+ ++K+KK +
Sbjct: 512 VEEEIAYIKEQMEGSAPKEPEEKEKKPE 539
>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl
aldehyde dehydrogenase, ALDH families 3, 13, and 14, and
other related proteins. ALDH subfamily which includes
NAD(P)+-dependent, aldehyde dehydrogenase, family 3
member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and
fatty aldehyde dehydrogenase, family 3 member A2
(ALDH3A2, EC=1.2.1.3), and also plant ALDH family
members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14
(YMR110C) and the protozoan family 13 member (ALDH13),
as well as coniferyl aldehyde dehydrogenases (CALDH,
EC=1.2.1.68), and other similar sequences, such as the
Pseudomonas putida benzaldehyde dehydrogenase I that is
involved in the metabolism of mandelate.
Length = 426
Score = 27.9 bits (63), Expect = 1.8
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 33 IGAWLYVFCLTLPPLFG 49
IG W Y L L PL G
Sbjct: 107 IGPWNYPLQLALAPLIG 123
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 27.8 bits (62), Expect = 1.8
Identities = 8/30 (26%), Positives = 23/30 (76%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ E E+ KK++ ++K++++++K +++K R
Sbjct: 148 LRELEKIKKERAEEKEREEEEKAAEEEKAR 177
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap
is involved in recombination. Rap (recombination adept
with plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 27.3 bits (61), Expect = 1.8
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+ +EKK+K + + ++++ K +K+K K R
Sbjct: 37 EKAQEKKRKAEAQAERRELKARKEKLKTR 65
Score = 25.4 bits (56), Expect = 8.1
Identities = 7/27 (25%), Positives = 19/27 (70%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRV 31
EK ++KK+K + + ++++ K +K ++
Sbjct: 36 REKAQEKKRKAEAQAERRELKARKEKL 62
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 27.7 bits (62), Expect = 1.8
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKNRV 31
+KKK++KK+++K+ K+ R
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKELRE 200
Score = 27.7 bits (62), Expect = 2.1
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKK 28
+KKK++KK+++K+ K+
Sbjct: 176 GHSSDSEKKKQRKKQRRKRSKEL 198
Score = 26.5 bits (59), Expect = 4.3
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
+KKK++KK+++K+ K+ +
Sbjct: 176 GHSSDSEKKKQRKKQRRKRSKELR 199
Score = 26.5 bits (59), Expect = 4.6
Identities = 9/20 (45%), Positives = 17/20 (85%)
Query: 4 DEEKKKKKKKKKKKKKKKKK 23
D EKKK++KK+++K+ K+ +
Sbjct: 180 DSEKKKQRKKQRRKRSKELR 199
Score = 26.1 bits (58), Expect = 7.1
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+KKK++KK+++K+ K+ +++
Sbjct: 173 GVPGHSSDSEKKKQRKKQRRKRSKELRED 201
Score = 25.7 bits (57), Expect = 7.7
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVC 32
+ +KKK++KK+++K+ K+ ++ +
Sbjct: 176 GHSSDSEKKKQRKKQRRKRSKELREDDDDDE 206
>gnl|CDD|219137 pfam06687, SUR7, SUR7/PalI family. This family consists of several
fungal-specific SUR7 proteins. Its activity regulates
expression of RVS161, a homologue of human endophilin,
suggesting a function for both in endocytosis. The
protein carries four transmembrane domains and is thus
likely to act as an anchoring protein for the eisosome
to the plasma membrane. Eisosomes are the immobile
protein complexes, that include the proteins Pil1 and
Lsp1, which co-localise with sites of protein and lipid
endocytosis at the plasma membrane. SUR7 protein may
play a role in sporulation. This family also includes
PalI which is part of a pH signal transduction cascade.
Based on the similarity of PalI to the yeast Rim9
meiotic signal transduction component it has been
suggested that PalI might be a membrane sensor for
ambient pH.
Length = 205
Score = 27.3 bits (61), Expect = 1.9
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 63 SWDYMSRTMSNRAFYLYLLMFGFIL-PVAVITYCYVFILHVVLAH 106
+ + S N Y YL F FI+ P+A+ IL +LAH
Sbjct: 91 NLNLPSSFRDNLNTYYYLSRFMFIVHPIALFFTVIALILAGILAH 135
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 27.6 bits (61), Expect = 1.9
Identities = 7/31 (22%), Positives = 20/31 (64%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E +E++++ K + KK++ +++KK+ +
Sbjct: 982 AEFEEKEERYNKDELKKERLEEEKKELLREI 1012
Score = 27.6 bits (61), Expect = 2.0
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAWLYVFCLTL 44
E+ + ++ K K++ KK + + K+K + LY+ L L
Sbjct: 193 LEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKL 235
>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN). This family
consists of several eukaryotic survival motor neuron
(SMN) proteins. The Survival of Motor Neurons (SMN)
protein, the product of the spinal muscular
atrophy-determining gene, is part of a large
macromolecular complex (SMN complex) that functions in
the assembly of spliceosomal small nuclear
ribonucleoproteins (snRNPs). The SMN complex functions
as a specificity factor essential for the efficient
assembly of Sm proteins on U snRNAs and likely protects
cells from illicit, and potentially deleterious,
non-specific binding of Sm proteins to RNAs.
Length = 264
Score = 27.6 bits (61), Expect = 1.9
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAW 36
+E ++ KK+K KK + +KK N + W
Sbjct: 36 TPQENDEQNPGKKRKNNKKNRSRKKCNAAPLKEW 69
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 27.7 bits (61), Expect = 2.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKK 26
+EDE+ K K +K+K KK +K
Sbjct: 259 DEDEDNKGKIRKRKTDDAKKSRKPH 283
Score = 26.2 bits (57), Expect = 6.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCI 33
E DE++ + K K +K+K KK +K + I
Sbjct: 255 ESDEDEDEDNKGKIRKRKTDDAKKSRKPHIHI 286
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 27.5 bits (61), Expect = 2.1
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
K + K +K K+ KK+KK+++K+
Sbjct: 24 VKDEAKPRKIKRVKKRKKREEKD 46
Score = 26.3 bits (58), Expect = 5.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKNR 30
+ K + K +K K+ KK+KK+
Sbjct: 22 RPVKDEAKPRKIKRVKKRKKREE 44
Score = 25.9 bits (57), Expect = 6.2
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 5 EEKKKKKKKKKKKKKKKKKK 24
+E K +K K+ KK+KK+++K
Sbjct: 26 DEAKPRKIKRVKKRKKREEK 45
Score = 25.9 bits (57), Expect = 8.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 7 KKKKKKKKKKKKKKKKKKKKK 27
+ K + K +K K+ KK+KK+
Sbjct: 22 RPVKDEAKPRKIKRVKKRKKR 42
Score = 25.6 bits (56), Expect = 8.4
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 4 DEEKKKKKKKKKKKKKKKKK 23
DE K +K K+ KK+KK+++K
Sbjct: 26 DEAKPRKIKRVKKRKKREEK 45
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 27.3 bits (61), Expect = 2.1
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
+E + K+++ + +KK+ KKK
Sbjct: 170 AEEAEAAAAAKEEESAEGEKKESKKK 195
Score = 26.9 bits (60), Expect = 3.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKK 25
E K+++ + +KK+ KKKK
Sbjct: 172 EAEAAAAAKEEESAEGEKKESKKKK 196
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast)
and GNL3L (human) are putative GTPases which are
required for growth and play a role in processing of
nucleolar pre-rRNA. This family contains a potential
nuclear localisation signal.
Length = 80
Score = 26.4 bits (59), Expect = 2.2
Identities = 11/30 (36%), Positives = 25/30 (83%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+EE EEKK+K++++K+++K+ +K ++ + R
Sbjct: 48 LEEIEEKKRKQEEEKERRKEARKAERAEAR 77
Score = 26.1 bits (58), Expect = 2.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKK 27
E +K +K+ KK K KKKK
Sbjct: 12 EHHRKLRKEAKKNPTWKSKKKK 33
Score = 25.3 bits (56), Expect = 5.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
+ K +KK + +K +K+ KKN
Sbjct: 2 LRYKIEKKVAEHHRKLRKEAKKN 24
Score = 24.5 bits (54), Expect = 8.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKK 26
E +K +K+ KK K KKKK
Sbjct: 12 EHHRKLRKEAKKNPTWKSKKKK 33
Score = 24.5 bits (54), Expect = 9.1
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 6 EKKKKKKKKKKKKKKKK----KKKKKK 28
EKK + +K +K+ KK K KKKK
Sbjct: 7 EKKVAEHHRKLRKEAKKNPTWKSKKKK 33
>gnl|CDD|227474 COG5145, RAD14, DNA excision repair protein [DNA replication,
recombination, and repair].
Length = 292
Score = 27.3 bits (60), Expect = 2.2
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 1 MEE-DEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+EE D EK++++K K +K+KK +KK K+ R
Sbjct: 211 LEELDREKQRREKMKDDRKEKKLEKKIKELR 241
>gnl|CDD|227238 COG4901, COG4901, Ribosomal protein S25 [Translation, ribosomal
structure and biogenesis].
Length = 107
Score = 26.8 bits (59), Expect = 2.3
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E+K +K K K KKK KKKKK
Sbjct: 7 LSKEKKAEKAKAGTAKDKKKWSKKKKKEEA 36
Score = 25.3 bits (55), Expect = 7.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E+ EK K K KKK KKKKK++ R
Sbjct: 10 EKKAEKAKAGTAKDKKKWSKKKKKEEARRA 39
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 27.0 bits (60), Expect = 2.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIG 34
E +E K ++++ +K +K+ KK KK G
Sbjct: 97 EARKEALKAYQQEELRKIQKRSKKSKKAEPVQG 129
Score = 25.8 bits (57), Expect = 5.2
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EE E +K+ K ++++ +K +K+ K
Sbjct: 93 EEKAEARKEALKAYQQEELRKIQKRSK 119
Score = 25.4 bits (56), Expect = 7.8
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E ++ K ++++ +K +K+ KK K
Sbjct: 96 AEARKEALKAYQQEELRKIQKRSKKSK 122
Score = 25.4 bits (56), Expect = 8.5
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E EE+K + +K+ K ++++ +K + R
Sbjct: 89 ELTEEEKAEARKEALKAYQQEELRKIQKR 117
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 27.1 bits (61), Expect = 2.4
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
K+KKKKKKKKK+ + ++KKKK V
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVV 106
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 26.9 bits (60), Expect = 2.4
Identities = 9/29 (31%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 2 EEDEEKKKKKKKKKKKKKK-KKKKKKKKN 29
DEEKK +++ K++ ++ K+++++KK
Sbjct: 98 ARDEEKKLDEEEAKRQHEEAKEREREKKK 126
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 27.4 bits (60), Expect = 2.4
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 5 EEKKKKKKKKKKKKKKKKK------KKKKKNRVCIG 34
+EKK K K +KKK KK K IG
Sbjct: 2 DEKKAKHSKAEKKKLKKVMDGKVGNNAKAFAVAAIG 37
Score = 27.4 bits (60), Expect = 3.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E++ E++ +K K+ KK+ KKK
Sbjct: 1049 KEKEREQRIRKTIHDNYKEMAKKRLKKK 1076
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 27.2 bits (61), Expect = 2.5
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNRV 31
E++K ++ + KK + + K K+ V
Sbjct: 463 EREKAAREARHKKAAEARAAKDKDAV 488
Score = 26.4 bits (59), Expect = 5.5
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKK 24
+E ++ ++ + KK + + K K
Sbjct: 462 LEREKAAREARHKKAAEARAAKDK 485
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 27.2 bits (60), Expect = 2.6
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
E ++K +KKK K K K
Sbjct: 222 EAAAEEKAAAEKKKAAAKAKADKAAA 247
Score = 26.5 bits (58), Expect = 5.7
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
EEK +KKK K K K
Sbjct: 224 AAEEKAAAEKKKAAAKAKADKAAAAA 249
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 26.9 bits (60), Expect = 2.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++ + K+ K KKK KKK+K R
Sbjct: 10 RQELAVQVAKQAKAKKKANKKKRKIYFKR 38
Score = 25.8 bits (57), Expect = 6.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
E + K+ K KKK KKK+K K+
Sbjct: 12 ELAVQVAKQAKAKKKANKKKRKIYFKRA 39
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 27.4 bits (61), Expect = 2.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKK 23
D EK KKKK+K K ++KK
Sbjct: 184 AADNEKPVKKKKEKPAKVEEKK 205
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 26.1 bits (58), Expect = 2.7
Identities = 9/28 (32%), Positives = 22/28 (78%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E E K+++++K+K+K+ ++++KK + R
Sbjct: 60 ERERKEREERKEKRKRAIEERRKKIEER 87
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of
70kDa MW N terminal. This domain is found in
eukaryotes. This domain is about 90 amino acids in
length. This domain is found associated with pfam00076.
This domain is part of U1 snRNP, which is the pre-mRNA
binding protein of the penta-snRNP spliceosome complex.
It extends over a distance of 180 A from its RNA
binding domain, wraps around the core domain of U1
snRNP consisting of the seven Sm proteins and finally
contacts U1-C, which is crucial for 5'-splice-site
recognition.
Length = 94
Score = 26.1 bits (58), Expect = 2.7
Identities = 9/25 (36%), Positives = 20/25 (80%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKN 29
EK++++K++KK+K +KK +++ K
Sbjct: 63 LEKREREKREKKEKLEKKLEEELKE 87
>gnl|CDD|151313 pfam10864, DUF2663, Protein of unknown function (DUF2663). Some
members in this family of proteins are annotated as
YpbF however currently no function is known.
Length = 131
Score = 26.6 bits (59), Expect = 2.8
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 17 KKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYMSRTMSNRAF 76
K+KKK + +K++ W + CL L + Y+ S S+ +
Sbjct: 8 KRKKKWDRLEKQHLFW--QWASLICLCL-----FCIYLYAKVTGSYSFTSFLSAILASPV 60
Query: 77 YLYLLMF 83
+L+ L+
Sbjct: 61 HLFWLLL 67
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 27.2 bits (61), Expect = 2.8
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRVC 32
E + ++ K+KKKKKKKKKKK++ + +C
Sbjct: 76 YERADRAEELLKEKKKKKKKKKKKEELREWMC 107
Score = 26.4 bits (59), Expect = 4.2
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNRVCI 33
EE K+KKKKKKKKKKK++ ++ I
Sbjct: 82 AEELLKEKKKKKKKKKKKEELREWMCEKFI 111
>gnl|CDD|148511 pfam06936, Selenoprotein_S, Selenoprotein S (SelS). This family
consists of several mammalian selenoprotein S (SelS)
sequences. SelS is a plasma membrane protein and is
present in a variety of tissues and cell types. The
function of this family is unknown.
Length = 190
Score = 26.8 bits (59), Expect = 2.8
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKK 27
M+ED + K K K+K+K+ +++K+++K
Sbjct: 92 MQEDLDAKAAKFKEKQKQLEEEKRRQK 118
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 27.2 bits (60), Expect = 2.8
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKK 28
EK K KKK K KK KKK+ K+
Sbjct: 207 EKDKYSYKKKLKSKKLKKKQAKR 229
Score = 26.8 bits (59), Expect = 3.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKN 29
+K KKK K KK KKK+ K++ N
Sbjct: 209 DKYSYKKKLKSKKLKKKQAKREAN 232
Score = 25.6 bits (56), Expect = 7.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKK 24
E+D+ KKK K KK KKK+ K+
Sbjct: 207 EKDKYSYKKKLKSKKLKKKQAKR 229
Score = 25.6 bits (56), Expect = 7.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKK 27
E+ K KKK K KK KKK+ K+
Sbjct: 207 EKDKYSYKKKLKSKKLKKKQAKR 229
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 26.5 bits (59), Expect = 2.8
Identities = 5/19 (26%), Positives = 15/19 (78%)
Query: 2 EEDEEKKKKKKKKKKKKKK 20
EEKK++++++++K++
Sbjct: 75 AAAEEKKEEEEEEEEKEES 93
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria
and viruses, and is typically between 159 and 170 amino
acids in length. There is a conserved HCV sequence
motif.
Length = 169
Score = 26.9 bits (60), Expect = 2.9
Identities = 7/27 (25%), Positives = 18/27 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
++++EK +K +K+ + +K ++ K K
Sbjct: 41 KKEKEKAEKMRKRYPELEKIFRELKSK 67
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 27.3 bits (60), Expect = 3.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
EE EE++ K+ K+ KKK++K K
Sbjct: 779 EEKEEEENKEVSAKRAKKKQRKNMLK 804
Score = 26.5 bits (58), Expect = 5.0
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
EE++E+++ K+ K+ KKK++K K+
Sbjct: 778 EEEKEEEENKEVSAKRAKKKQRKNMLKS 805
>gnl|CDD|218337 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1).
This family consists of several eukaryotic ribosome
biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear
protein that is essential for the maturation of 25 S
rRNA and the 60 S ribosomal subunit assembly in
Saccharomyces cerevisiae.
Length = 164
Score = 26.9 bits (60), Expect = 3.0
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ E+ KK+++KK++ K +K++ KN
Sbjct: 134 DDPKEDPFAKKRREKKERVAKNEKRELKN 162
Score = 25.7 bits (57), Expect = 7.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
ED KK+++KK++ K +K++ K K
Sbjct: 138 EDPFAKKRREKKERVAKNEKRELKNK 163
Score = 25.7 bits (57), Expect = 7.2
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKK 28
KK+++KK++ K +K++ K KK
Sbjct: 142 AKKRREKKERVAKNEKRELKNKK 164
Score = 25.3 bits (56), Expect = 9.8
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKK 27
+K+++KK++ K +K++ K KK
Sbjct: 142 AKKRREKKERVAKNEKRELKNKK 164
>gnl|CDD|204519 pfam10587, EF-1_beta_acid, Eukaryotic elongation factor 1 beta
central acidic region.
Length = 28
Score = 24.9 bits (55), Expect = 3.0
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 2 EEDEEKKKKKKKKKKKKKKKK 22
EEDEE ++ ++++ KK
Sbjct: 8 EEDEEAERIREERLAAYAAKK 28
>gnl|CDD|239571 cd03489, Topoisomer_IB_N_LdtopoI_like,
Topoisomer_IB_N_LdtopoI_like: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the heterodimeric topo I from
Leishmania donvanni. Topo I enzymes are divided into:
topo type IA (bacterial) and type IB (eukaryotic). Topo
I relaxes superhelical tension in duplex DNA by creating
a single-strand nick, the broken strand can then rotate
around the unbroken strand to remove DNA supercoils and,
the nick is religated, liberating topo I. These enzymes
regulate the topological changes that accompany DNA
replication, transcription and other nuclear processes.
Human topo I is the target of a diverse set of
anticancer drugs including camptothecins (CPTs). CPTs
bind to the topo I-DNA complex and inhibit re-ligation
of the single-strand nick, resulting in the accumulation
of topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topo I play putative roles in
organizing the kinetoplast DNA network unique to these
parasites. This family may represent more than one
structural domain.
Length = 212
Score = 26.8 bits (59), Expect = 3.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCI 33
+ E E+KK + K++KK K++K K+ + C+
Sbjct: 92 LREKEKKKSRTKEEKKALKEEKDKEAEPYMWCV 124
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 27.1 bits (61), Expect = 3.0
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+EE +K++ K++ +++ K + ++
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAA 66
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII. Eukaryotic DNA topoisomerase
II, GyrB, ParE.
Length = 594
Score = 27.1 bits (61), Expect = 3.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 16 KKKKKKKKKKKKKNRVCIGAWLYVFCL 42
KKKKK K+K K V G ++
Sbjct: 265 KKKKKLKEKNIKGEDVREGLTAFISVK 291
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 26.7 bits (59), Expect = 3.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
K K KK KK KKKKKKK+
Sbjct: 194 HYKGDKSSAKKDKKSKKKKKKKRS 217
Score = 26.3 bits (58), Expect = 4.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKK 25
+K KK KK KKKKKKK+
Sbjct: 194 HYKGDKSSAKKDKKSKKKKKKKRS 217
Score = 25.5 bits (56), Expect = 8.6
Identities = 13/21 (61%), Positives = 13/21 (61%)
Query: 9 KKKKKKKKKKKKKKKKKKKKN 29
K K KK KK KKKKKKK
Sbjct: 196 KGDKSSAKKDKKSKKKKKKKR 216
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 26.9 bits (60), Expect = 3.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKK 27
EE+ + ++ + KKK+ +KKKK+K
Sbjct: 153 EEEEAKLAEEALEALKKKEAEKKKKEK 179
Score = 26.1 bits (58), Expect = 4.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
EE+E K ++ + KKK+ +KKKK+K
Sbjct: 153 EEEEAKLAEEALEALKKKEAEKKKKEKE 180
>gnl|CDD|239563 cd03481, TopoIIA_Trans_ScTopoIIA, TopoIIA_Trans_ScTopoIIA:
Transducer domain, having a ribosomal S5 domain 2-like
fold, of the type found in proteins of the type IIA
family of DNA topoisomerases similar to Saccharomyces
cerevisiae Topo IIA. S. cerevisiae Topo IIA is a
homodimer encoded by a single gene. The type IIA enzymes
are the predominant form of topoisomerase and are found
in some bacteriophages, viruses and archaea, and in all
bacteria and eukaryotes. All type IIA topoisomerases
are related to each other at amino acid sequence level,
though their oligomeric organization sometimes differs.
TopoIIA enzymes cut both strands of the duplex DNA to
remove (relax) both positive and negative supercoils in
DNA. These enzymes covalently attach to the 5' ends of
the cut DNA, separate the free ends of the cleaved
strands, pass another region of the duplex through this
gap, then rejoin the ends. TopoIIA enzymes also
catenate/ decatenate duplex rings. This transducer
domain is homologous to the second domain of the DNA
gyrase B subunit, which is known to be important in
nucleotide hydrolysis and the transduction of structural
signals from ATP-binding site to the DNA
breakage/reunion regions of the enzymes.
Length = 153
Score = 26.5 bits (59), Expect = 3.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 17 KKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLF 48
KKK K K +V W++V CL P F
Sbjct: 78 KKKNKGGINVKPFQVKNHLWIFVNCLIENPSF 109
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the
parasitophorous vacuole membrane. Members have an
initial hydrophobic, Phe/Tyr-rich, stretch long enough
to span the membrane, a highly charged region rich in
Lys, a second putative transmembrane region and a
second highly charged, low complexity sequence region.
Some members have up to 100 residues of additional
C-terminal sequence. These genes have been shown to be
found in the sub-telomeric regions of both Plasmodium
falciparum and P. yoelii chromosomes.
Length = 82
Score = 25.7 bits (57), Expect = 3.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNRVCI 33
KKKK KK KK +KKKK + I
Sbjct: 28 VAKKKKLKKLKKIDDDLEKKKKNKKKII 55
Score = 25.3 bits (56), Expect = 4.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRVCIGA 35
KKKK KK KK +KKKK K ++ I +
Sbjct: 28 VAKKKKLKKLKKIDDDLEKKKKNKKKIIISS 58
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 26.6 bits (59), Expect = 3.3
Identities = 8/30 (26%), Positives = 24/30 (80%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE+E +++KK ++K++ ++K++++ ++ R
Sbjct: 23 AEEEEREERKKLEEKREGERKEEEELEEER 52
Score = 26.6 bits (59), Expect = 3.5
Identities = 7/30 (23%), Positives = 23/30 (76%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE+ E++KK ++K++ ++K++++ +++
Sbjct: 24 EEEEREERKKLEEKREGERKEEEELEEERE 53
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 26.9 bits (60), Expect = 3.4
Identities = 5/27 (18%), Positives = 18/27 (66%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKK 27
+EED + +K+ ++ K++++ +++
Sbjct: 164 LEEDAADRDARKRAAEEAKEQEELRRR 190
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 26.6 bits (59), Expect = 3.4
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 11/40 (27%)
Query: 2 EEDEEKKKKKKKKKKKKKK-----------KKKKKKKKNR 30
E DE +KKK++ +K +K KK+K K +NR
Sbjct: 127 ERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNR 166
>gnl|CDD|192292 pfam09429, Wbp11, WW domain binding protein 11. The WW domain is
a small protein module with a triple-stranded
beta-sheet fold. This is a family of WW domain binding
proteins.
Length = 78
Score = 25.7 bits (57), Expect = 3.7
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 4 DEEKKKKKKKKKKKKKKKKKK 24
D +K++KKK+ KK K +++
Sbjct: 8 DAYRKEQKKKELKKNKAERQA 28
Score = 24.9 bits (55), Expect = 5.9
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 11 KKKKKKKKKKKKKKKKKKNR 30
+K++KKK+ KK K +++ R
Sbjct: 11 RKEQKKKELKKNKAERQARR 30
>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain.
Length = 372
Score = 26.9 bits (60), Expect = 3.7
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRV 31
K KKKK KK +KK KKKKK+ V
Sbjct: 51 SAKAKKKKSKKSEKKSSSKKKKKEISV 77
>gnl|CDD|223421 COG0344, COG0344, Predicted membrane protein [Function unknown].
Length = 200
Score = 26.4 bits (59), Expect = 3.8
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 76 FYLYLLMFGFILPVAVITYCYVFILH 101
F LYL+ PVA++ V H
Sbjct: 160 FDLYLIAPQIGFPVALLA-ILVIYRH 184
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 26.8 bits (60), Expect = 3.8
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRV 31
++K+KKK+KKK KKKK K + ++
Sbjct: 395 VAPEQKEKKKEKKKNKKKKYKVPRGKI 421
Score = 26.4 bits (59), Expect = 5.8
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNR 30
++K+KKK+KKK KKKK K R
Sbjct: 394 GVAPEQKEKKKEKKKNKKKKYKVPR 418
Score = 26.0 bits (58), Expect = 6.8
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+K+KKK+KKK KKKK K + K
Sbjct: 394 GVAPEQKEKKKEKKKNKKKKYKVPRGK 420
Score = 25.6 bits (57), Expect = 9.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+ ++K+KKK+KKK KKKK +V
Sbjct: 390 AQPVGVAPEQKEKKKEKKKNKKKKYKV 416
>gnl|CDD|150240 pfam09495, DUF2462, Protein of unknown function (DUF2462). This
protein is highly conserved, but its function is
unknown. It can be isolated from HeLa cell nucleoli and
is found to be homologous with Leydig cell tumour
protein whose function is unknown.
Length = 82
Score = 25.5 bits (56), Expect = 3.9
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRVC 32
K K K KKK+K KK RV
Sbjct: 9 KAKGPAAVKAGKKKQKGPKKAGPRVI 34
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional.
Length = 473
Score = 26.6 bits (59), Expect = 4.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 23 KKKKKKNRVCIGAWLYVFCLTLP 45
K +K + + A LYV LTLP
Sbjct: 260 WKPQKFKYIYLAATLYVLTLTLP 282
>gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.
Length = 631
Score = 26.6 bits (60), Expect = 4.1
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRVC 32
+ + + KK K+KKK K C
Sbjct: 381 QARLRAAKKVKRKKKTSGPALPGKLADC 408
>gnl|CDD|218728 pfam05745, CRPA, Chlamydia 15 kDa cysteine-rich outer membrane
protein (CRPA). This family consists of several
Chlamydia 15 kDa cysteine-rich outer membrane proteins
which are associated with differentiation of reticulate
bodies (RBs) into elementary bodies (EBs).
Length = 150
Score = 26.5 bits (58), Expect = 4.1
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 68 SRTMSNRAFYLYLLMFGFILPVAVITYCYVFILHVVLA 105
S+ +S+RAF + L++ G +L +A + FIL L
Sbjct: 56 SKILSSRAFQITLVVLGILLVIAGLA--LTFILQAQLG 91
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 26.6 bits (59), Expect = 4.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 2 EEDEEKKKKKKKKKKKKKK 20
EED KKK KKK+++K +
Sbjct: 178 EEDGAKKKAKKKRQRKPES 196
Score = 26.3 bits (58), Expect = 6.3
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKK 25
E + K +K+KK+ K+
Sbjct: 431 PEPRAAADTKSAAEKQKKRAKE 452
Score = 26.3 bits (58), Expect = 6.5
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 2 EEDEEKKKKKKKKKKKKKKKK 22
E K +K+KK+ K+
Sbjct: 432 EPRAAADTKSAAEKQKKRAKE 452
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 26.7 bits (59), Expect = 4.1
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EE EK ++ + + KK ++
Sbjct: 1176 EEAREKLQRAAARGESGAAKKVSRQAP 1202
Score = 26.7 bits (59), Expect = 4.2
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKN 29
KK ++ KK KK KK
Sbjct: 1195 KKVSRQAPKKPAPKKTTKKASE 1216
Score = 26.7 bits (59), Expect = 5.1
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
E KK ++ KK KK KK
Sbjct: 1190 ESGAAKKVSRQAPKKPAPKKTTKK 1213
>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing
[Translation, ribosomal structure and biogenesis].
Length = 98
Score = 25.8 bits (57), Expect = 4.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKK 27
K +KK+K +KK++ KK K
Sbjct: 77 PDKLIRKKRKLPRKKRRPKKPK 98
Score = 25.4 bits (56), Expect = 5.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 8 KKKKKKKKKKKKKKKKKKKKK 28
K +KK+K +KK++ KK K
Sbjct: 78 DKLIRKKRKLPRKKRRPKKPK 98
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 26.9 bits (60), Expect = 4.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKK 23
EE+EE+K+KKKKK + + +
Sbjct: 369 EEEEEEEKEKKKKKSAESTRSEL 391
Score = 26.5 bits (59), Expect = 4.6
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKK 27
E+DEE+++++K+KKKKK + + +
Sbjct: 365 DEDDEEEEEEEKEKKKKKSAESTRSEL 391
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion
and trafficking].
Length = 150
Score = 26.2 bits (58), Expect = 4.3
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E + +K+ +++KK +K K+K +
Sbjct: 45 EETELDKELFTPEEQKKITFQKHKEKPEQE 74
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase.
Length = 530
Score = 26.6 bits (59), Expect = 4.4
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+ +K KK KK K +K +++
Sbjct: 5 AVEESGEKISKKAAKKAAAKAEKLRREATA 34
Score = 26.6 bits (59), Expect = 5.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE EK KK KK K +K +++ +
Sbjct: 7 EESGEKISKKAAKKAAAKAEKLRREATAK 35
Score = 26.6 bits (59), Expect = 5.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E EE +K KK KK K +K ++
Sbjct: 4 EAVEESGEKISKKAAKKAAAKAEKLRREA 32
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 26.6 bits (59), Expect = 4.4
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
M +E+ K+ K++ KK + K K+
Sbjct: 522 MAREEQGTNFGKRNSKERYKKNEDKIKE 549
Score = 26.2 bits (58), Expect = 7.1
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKN 29
EE+ K+ K++ KK + K K
Sbjct: 525 EEQGTNFGKRNSKERYKKNEDKIKE 549
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 26.5 bits (59), Expect = 4.5
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
++EE+++ + K + ++ + K+K K
Sbjct: 131 DEEERERLLRAAKSRSEQSRLKQKAKE 157
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 26.3 bits (58), Expect = 4.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKN 29
EEK+ K KK K K KK KK
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAA 132
Score = 25.5 bits (56), Expect = 7.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKK 26
EE E K KK K K KK KK
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAA 132
Score = 25.5 bits (56), Expect = 9.7
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+ KK + +KK + + + +K
Sbjct: 124 AKKAAKKAALEAEKKVNEARAEAVAEKKAA 153
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is
functionally equivalent to L7/L12 in bacteria and the
P1 and P2 proteins in eukaryotes. L12p is homologous to
P1 and P2 but is not homologous to bacterial L7/L12. It
is located in the L12 stalk, with proteins L10, L11,
and 23S rRNA. L12p is the only protein in the ribosome
to occur as multimers, always appearing as sets of
dimers. Recent data indicate that most archaeal species
contain six copies of L12p (three homodimers), while
eukaryotes have four copies (two heterodimers), and
bacteria may have four or six copies (two or three
homodimers), depending on the species. The organization
of proteins within the stalk has been characterized
primarily in bacteria, where L7/L12 forms either two or
three homodimers and each homodimer binds to the
extended C-terminal helix of L10. L7/L12 is attached to
the ribosome through L10 and is the only ribosomal
protein that does not directly interact with rRNA.
Archaeal L12p is believed to function in a similar
fashion. However, hybrid ribosomes containing the large
subunit from E. coli with an archaeal stalk are able to
bind archaeal and eukaryotic elongation factors but not
bacterial elongation factors. In several mesophilic and
thermophilic archaeal species, the binding of 23S rRNA
to protein L11 and to the L10/L12p pentameric complex
was found to be temperature-dependent and cooperative.
Length = 106
Score = 25.9 bits (57), Expect = 4.8
Identities = 8/22 (36%), Positives = 18/22 (81%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKK 23
EEK ++K+++KKK+++K++
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEE 93
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 26.6 bits (58), Expect = 4.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E D++ K K KK+K +++++KK K
Sbjct: 520 EADKDVNKSKNKKRKVDEEEEEKKLKM 546
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 26.4 bits (58), Expect = 5.2
Identities = 7/26 (26%), Positives = 20/26 (76%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ +EK++ + +K K+ ++KK+++K+
Sbjct: 165 KQKEKRRVEDSQKHKEDRRKKQEEKR 190
Score = 25.6 bits (56), Expect = 8.1
Identities = 7/28 (25%), Positives = 22/28 (78%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
++ E+++ + +K K+ ++KK+++K++N
Sbjct: 165 KQKEKRRVEDSQKHKEDRRKKQEEKRRN 192
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 26.5 bits (59), Expect = 5.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 9 KKKKKKKKKKKKKKKKKKKKNRVCIG 34
KK KK K K KKKKKK +
Sbjct: 350 KKPIKKSNSKAKLKKKKKKAGASAVP 375
Score = 25.7 bits (57), Expect = 8.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
KK KK K K KKKKKK + V
Sbjct: 350 KKPIKKSNSKAKLKKKKKKAGASAV 374
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 26.0 bits (57), Expect = 5.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
EE + KK+ K+ K++ ++K+N V
Sbjct: 13 PQEETTDEAPKKEAKEAPKEEDQEKQNPV 41
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many
hypothetical proteins.
Length = 98
Score = 25.5 bits (56), Expect = 5.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNR 30
KK+KKKKK+ K + K KK +
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQK 45
Score = 24.7 bits (54), Expect = 9.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ ++K+ K + K KK +KK KKK+
Sbjct: 25 KKKKKRTAKTARPKATKKGQKKDKKKDE 52
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 26.2 bits (58), Expect = 5.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
EEK+K++ KKK K +K K+ R
Sbjct: 156 EEKRKERAAAYYKKKVKLRKAWKEAR 181
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 26.5 bits (59), Expect = 5.8
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKK 26
+++ KKK++ K + K+ KK
Sbjct: 536 LKQPAVKKKEEAAAPKAETVKRSSKK 561
Score = 25.7 bits (57), Expect = 8.1
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKK 27
+ KKK++ K + K+ KK
Sbjct: 536 LKQPAVKKKEEAAAPKAETVKRSSKK 561
>gnl|CDD|217553 pfam03430, TATR, Trans-activating transcriptional regulator. This
family of trans-activating transcriptional regulator
(TATR), also known as intermediate early protein 1, are
common to the Nucleopolyhedroviruses.
Length = 571
Score = 26.4 bits (58), Expect = 5.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ + K KK K KK++K KK ++
Sbjct: 137 DSSDSSKGKKLVNKPKKRQKYKKATIQSP 165
>gnl|CDD|199846 cd03864, M14_CPN, Peptidase M14 carboxypeptidase subfamily
N/E-like; Carboxypeptidase N subgroup. Peptidase M14
Carboxypeptidase N (CPN, also known as kininase I,
creatine kinase conversion factor, plasma
carboxypeptidase B, arginine carboxypeptidase, and
protaminase; EC 3.4.17.3) is an extracellular
glycoprotein synthesized in the liver and released into
the blood, where it is present in high concentrations.
CPN belongs to the N/E subfamily of the M14 family of
metallocarboxypeptidases (MCPs).The M14 family are
zinc-binding carboxypeptidases (CPs) which hydrolyze
single, C-terminal amino acids from polypeptide chains,
and have a recognition site for the free C-terminal
carboxyl group, which is a key determinant of
specificity. CPN plays an important role in protecting
the body from excessive buildup of potentially
deleterious peptides that normally act as local
autocrine or paracrine hormones. It specifically removes
C-terminal basic residues. As CPN can cleave lysine more
avidly than arginine residues it is also called lysine
carboxypeptidase. CPN substrates include peptides found
in the bloodstream, such as kinins (e.g. bradykinin,
kalinin, met-lys-bradykinin), complement anaphylatoxins
and creatine kinase MM (CK-MM). By removing just one
amino acid, CPN can alter peptide activity and receptor
binding. For example Bradykinin, a nine-residue peptide
released from kiningen in response to tissue injury
which is inactivated by CPN, anaphylatoxins which are
regulated by CPN by the cleaving and removal of their
C-terminal arginines resulting in a reduction in their
biological activities of 10-100-fold, and creatine
kinase MM, a cytosolic enzyme that catalyzes the
reversible transfer of a phosphate group from ATP to
creatine, and is regulated by CPN by the cleavage of
C-terminal lysines. Like the other N/E subfamily
members, two surface loops surrounding the active-site
groove restrict access to the catalytic center, thus
restricting larger protein carboxypeptidase inhibitors
from inhibiting CPN.
Length = 313
Score = 26.0 bits (57), Expect = 6.1
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 49 GWSC--YIPEGFMTSCSWDYMSRTMSN 73
GW+C Y EG SW +S+ M +
Sbjct: 244 GWNCGDYFDEGITNGASWYSLSKGMQD 270
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 26.2 bits (58), Expect = 6.1
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
E++ K KK KK K KK
Sbjct: 253 AERRAKGGPGKKPAKKATAAKAKK 276
>gnl|CDD|177400 PHA02571, a-gt.4, hypothetical protein; Provisional.
Length = 109
Score = 25.5 bits (56), Expect = 6.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E +E + + + + + +KK K KKNR
Sbjct: 15 EVEELLSELQARNEAEAEKKAAKILKKNR 43
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 26.3 bits (58), Expect = 6.3
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E + K K K KK K +
Sbjct: 385 EAEPPPTKPKPKVSTPAVPAAAKKPKAPK 413
>gnl|CDD|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55
(DUF2040). This entry is a conserved domain of
approximately 130 residues of proteins conserved from
fungi to humans. The proteins do contain a coiled-coil
domain, but the function is unknown.
Length = 128
Score = 25.4 bits (56), Expect = 6.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
D K K++KK+ K ++K+ +K K
Sbjct: 25 DSIKAAKEEKKQAKLSERKENRKPK 49
>gnl|CDD|217935 pfam04158, Sof1, Sof1-like domain. Sof1 is essential for cell
growth and is a component of the nucleolar rRNA
processing machinery.
Length = 88
Score = 25.3 bits (56), Expect = 6.4
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 10 KKKKKKKKKKKKKKKKKKKNRV 31
KK +K K++ K+ KK+K++NR
Sbjct: 48 KKAQKIKREMKEAKKRKEENRR 69
>gnl|CDD|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 158 and 187 amino
acids in length. This family includes the PcfB protein.
Length = 137
Score = 25.7 bits (57), Expect = 6.5
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKK 27
++ ++ K+++ KKK++K K K KKK
Sbjct: 111 RKKLKKFKEEQAAKKKERKDKVKNKKK 137
>gnl|CDD|149515 pfam08492, SRP72, SRP72 RNA-binding domain. This region has been
identified as the binding site of the SRP72 protein to
SRP RNA.
Length = 57
Score = 24.7 bits (54), Expect = 6.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKKNR 30
+K KKK ++KKKK KKK+K +
Sbjct: 6 KKIAKKKPGTEQKKKKSAKKKRKPK 30
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56
family). Protein phosphatase 2A (PP2A) is a major
intracellular protein phosphatase that regulates
multiple aspects of cell growth and metabolism. The
ability of this widely distributed heterotrimeric enzyme
to act on a diverse array of substrates is largely
controlled by the nature of its regulatory B subunit.
There are multiple families of B subunits (See also
pfam01240), this family is called the B56 family.
Length = 405
Score = 26.1 bits (58), Expect = 6.6
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
DE K K+K+ K+KKK+KK+KK R+
Sbjct: 373 DECGNKYKEKEAKEKKKEKKRKKTWARI 400
>gnl|CDD|222791 PHA00431, PHA00431, internal virion protein C.
Length = 746
Score = 26.3 bits (58), Expect = 6.6
Identities = 4/29 (13%), Positives = 15/29 (51%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+D K+ + +++ ++K+K+ +
Sbjct: 710 LKDANKRAPIVAATQAREEVREKRKQTSG 738
>gnl|CDD|227809 COG5522, COG5522, Predicted integral membrane protein [Function
unknown].
Length = 236
Score = 25.9 bits (57), Expect = 6.7
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 46 PLFGWSCYIPEGFMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVI 92
L+ W I FM + D + F L+ + + AVI
Sbjct: 98 VLYFWG--IGISFMALLTPDLQYLQVPWLEFLLFFITHISVFLSAVI 142
>gnl|CDD|181988 PRK09609, PRK09609, hypothetical protein; Provisional.
Length = 312
Score = 26.2 bits (58), Expect = 6.7
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 2 EEDEEKKKKK----KKKKKKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLFGWSCYIPEG 57
E +K K+K +KKKKK +K ++K N I A + + + L F P+
Sbjct: 137 SEKIQKIKQKIILLEKKKKKLEKTNEEKSLLNFSWIAALIILVIIILFIYFVVGFLDPDF 196
Query: 58 FMTSCSWDYMSRTMSNRAFYLYLLMFGFILPVAVITYCYVFI 99
F+ S S+ + N+ + L++ GFIL + + + FI
Sbjct: 197 FIQSFSF------IKNKRSLMILIISGFILMIIFVIWARFFI 232
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The
family functions as a highly conserved exonuclease that
is required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing
and export.
Length = 134
Score = 25.8 bits (57), Expect = 6.7
Identities = 6/22 (27%), Positives = 20/22 (90%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
K+K++++KK +++ K+K+++++
Sbjct: 29 KRKQQRRKKAQEEAKEKEREER 50
>gnl|CDD|222658 pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy.
This family includes O-antigen polysaccharide
polymerases. These enzymes link O-units via a glycosidic
linkage to form a long O-antigen. These enzymes vary in
specificity and sequence.
Length = 440
Score = 26.1 bits (58), Expect = 6.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKNRVCIGAWLYVFCLTL 44
+KKK+KK+KKK + + ++ KN + L+
Sbjct: 103 RKKKRKKEKKKNQLEYERLLKNLRKLSLILFYITFIF 139
>gnl|CDD|183255 PRK11646, PRK11646, multidrug resistance protein MdtH; Provisional.
Length = 400
Score = 26.2 bits (58), Expect = 7.0
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 17/109 (15%)
Query: 33 IGAWL--YVF---CLTLPPLF----GWSCYIPEGFMTSCS----WDYMSRTMSNRAFYLY 79
+G+WL Y F C T LF ++ ++ + S + M+R + ++ F Y
Sbjct: 154 LGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAYKLSTVRTPVREGMTRVLRDKRFVTY 213
Query: 80 LLMFG--FILPVAVITYCYVFILHVV--LAHGKEMSNLKTTGSYTLLTP 124
+L ++L V V+ + + + + K M ++ S TLL P
Sbjct: 214 VLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYP 262
>gnl|CDD|241262 cd01228, PH_BCR-related, Breakpoint Cluster Region-related
pleckstrin homology (PH) domain. The BCR gene is one of
the two genes in the BCR-ABL complex, which is
associated with the Philadelphia chromosome, a product
of a reciprocal translocation between chromosomes 22 and
9. BCR is a GTPase-activating protein (GAP) for RAC1
(primarily) and CDC42. The Dbl region of BCR has the
most RhoGEF activity for Cdc42, and less activity
towards Rac and Rho. Since BCR possesses both GAP and
GEF activities, it may function to temporally regulate
the activity of these GTPases. It also displays
serine/threonine kinase activity. The BCR protein
contains multiple domains including an N-terminal kinase
domain, a RhoGEF domain, a PH domain, a C1 domain, a C2
domain, and a C-terminal RhoGAP domain. ABR, a related
smaller protein, is structurally similar to BCR, but
lacks the N-terminal kinase domain and has GAP activity
for both Rac and Cdc42. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 179
Score = 25.8 bits (57), Expect = 7.0
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
EE + KK K+K K+ ++KK
Sbjct: 88 SEELVQMKKAISALKQKIKRDSAERKKAAS 117
Score = 25.4 bits (56), Expect = 8.4
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKK 27
+ + ++KK + +K +KK
Sbjct: 103 QKIKRDSAERKKAASSGSRAIEKLRKK 129
>gnl|CDD|143450 cd07132, ALDH_F3AB, Aldehyde dehydrogenase family 3 members A1, A2,
and B1 and related proteins. NAD(P)+-dependent,
aldehyde dehydrogenase, family 3 members A1 and B1
(ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde
dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3),
and similar sequences are included in this CD. Human
ALDH3A1 is a homodimer with a critical role in cellular
defense against oxidative stress; it catalyzes the
oxidation of various cellular membrane lipid-derived
aldehydes. Corneal crystalline ALDH3A1 protects the
cornea and underlying lens against UV-induced oxidative
stress. Human ALDH3A2, a microsomal homodimer, catalyzes
the oxidation of long-chain aliphatic aldehydes to fatty
acids. Human ALDH3B1 is highly expressed in the kidney
and liver and catalyzes the oxidation of various medium-
and long-chain saturated and unsaturated aliphatic
aldehydes.
Length = 443
Score = 26.0 bits (58), Expect = 7.0
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 33 IGAWLYVFCLTLPPLFG 49
IGAW Y LTL PL G
Sbjct: 107 IGAWNYPLQLTLVPLVG 123
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 26.2 bits (58), Expect = 7.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKK 24
DE K+ +K KKKKK +K
Sbjct: 901 SDEIKQDEKTTKKKKKDLEKTD 922
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain. This domain is found in peptide
chain release factors such as RF-1 and RF-2, and a
number of smaller proteins of unknown function. This
domain contains the peptidyl-tRNA hydrolase activity.
The domain contains a highly conserved motif GGQ, where
the glutamine is thought to coordinate the water that
mediates the hydrolysis.
Length = 114
Score = 25.2 bits (56), Expect = 7.1
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
+KK++K K + + ++ +K+K R
Sbjct: 76 LQKKREKTKPTRASQVRRGDRKEKIR 101
>gnl|CDD|236078 PRK07726, PRK07726, DNA topoisomerase III; Provisional.
Length = 658
Score = 25.9 bits (58), Expect = 7.5
Identities = 8/27 (29%), Positives = 8/27 (29%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKNRVCIG 34
K K K K K K VC
Sbjct: 609 TGPKCPDCGKPMLKVKGKNGKMLVCQD 635
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 26.1 bits (58), Expect = 7.5
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
EEK K++ K K + +K+
Sbjct: 24 EEKAAKEEAKAAAAAAAAKGRSRKSA 49
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 25.8 bits (56), Expect = 7.6
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCI 33
E + E KKK K+ KK K + I
Sbjct: 273 EIEAEALASATAVKKKAKEVMKKALKMEKKAI 304
>gnl|CDD|178997 PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.
Length = 79
Score = 24.8 bits (55), Expect = 7.6
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 13 KKKKKKKKKKKKKKKKNRVC 32
+KK +++ ++KK R C
Sbjct: 1 GGRKKARRRFFRRKKVCRFC 20
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 26.2 bits (57), Expect = 7.8
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKK-----KKNRVCIGAWLYVF-CLTLPPLFGWSCYIP 55
EE EE+K++++++K +K K K K +V + L C+ + FGWS ++
Sbjct: 524 EESEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILVTSEFGWSAHME 583
Query: 56 E 56
+
Sbjct: 584 Q 584
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 25.6 bits (56), Expect = 7.8
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+E++KKK K++K+ KKK++ K++
Sbjct: 94 EEEKEKKKNLNKEEKEAKKKERAKREYP 121
>gnl|CDD|220633 pfam10214, Rrn6, RNA polymerase I-specific transcription-initiation
factor. RNA polymerase I-specific
transcription-initiation factor Rrn6 and Rrn7 represent
components of a multisubunit transcription factor
essential for the initiation of rDNA transcription by
Pol I. These proteins are found in fungi.
Length = 753
Score = 25.9 bits (57), Expect = 8.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 6 EKKKKKKKKKKK 17
KKKKKKK+K
Sbjct: 739 SASKKKKKKKRK 750
>gnl|CDD|188452 TIGR03937, PgaC_IcaA, poly-beta-1,6 N-acetyl-D-glucosamine
synthase. Members of this protein family are
biofilm-forming enzymes that polymerize
N-acetyl-D-glucosamine residues in beta(1,6) linkage.
One named members is IcaA (intercellular adhesin protein
A), an enzyme that acts (with aid of subunit IcaD) in
Polysaccharide Intercellular Adhesin (PIA) biosynthesis
in Staphylococcus epidermis). The homologous member in
E. coli is designated PgaC. Members are often encoded
next to a polysaccharide deacetylase and involved in
biofilm formation. Note that chitin, although also made
from N-acetylglucosamine, is formed with beta-1,4
linkages.
Length = 407
Score = 25.7 bits (57), Expect = 8.2
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 66 YMSRTMSNRAFYLYLLMFGFILPVAVITYCYVFILHVVLA 105
Y + R L+ L+F +I+ V + Y +L ++L
Sbjct: 277 YFRQLWRWRNRRLWPLLFEYIVSVI---WAYSVLLLLILW 313
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 25.9 bits (57), Expect = 8.6
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
E+K+K+ K++++KK+ +++KKKK
Sbjct: 280 TERKEKEAKEQQEKKELEQRKKKKKE 305
>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper.
Length = 54
Score = 24.1 bits (53), Expect = 8.7
Identities = 7/34 (20%), Positives = 24/34 (70%), Gaps = 5/34 (14%)
Query: 3 EDEEKKKKKKK-----KKKKKKKKKKKKKKKNRV 31
+D+E + ++++ ++ ++KKK+++++ + RV
Sbjct: 1 KDDEYRDRRRRNNEAARRSREKKKQREEELEERV 34
>gnl|CDD|236272 PRK08475, PRK08475, F0F1 ATP synthase subunit B; Validated.
Length = 167
Score = 25.4 bits (56), Expect = 8.8
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+EE +EK K+ K+KK+ KK ++ K+K
Sbjct: 62 LEEIQEKLKESKEKKEDALKKLEEAKEK 89
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 25.9 bits (57), Expect = 8.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
KKKKKKKKK K+ + K
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKT 32
>gnl|CDD|147012 pfam04647, AgrB, Accessory gene regulator B. The arg locus
consists of two transcripts: RNAII and RNAIII. RNAII
encodes four genes (agrA, B, C, and D) whose gene
products assemble a quorum sensing system. AgrB and AgrD
are essential for the production of the autoinducing
peptide which functions as a signal for quorum sensing.
AgrB is a transmembrane protein.
Length = 185
Score = 25.2 bits (56), Expect = 9.0
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 13 KKKKKKKKKKKKKKKKNRVCIGAWLYVFCLTLP 45
KK ++ +KK K + + L V L L
Sbjct: 124 PKKPITNEELRKKLKIKSIIVLLILLVISLILS 156
>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional.
Length = 212
Score = 25.5 bits (56), Expect = 9.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKK 27
K K KK+KKK+ K+KKK
Sbjct: 191 AKLNAKFVGKKEKKKQAKEKKK 212
>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase
component YidC; Provisional.
Length = 304
Score = 25.4 bits (56), Expect = 9.2
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 8/35 (22%)
Query: 1 MEEDEEKKKKKKKKKKK--------KKKKKKKKKK 27
++++EE KK+ K +++ K K+ KKK
Sbjct: 270 IDKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
>gnl|CDD|218251 pfam04762, IKI3, IKI3 family. Members of this family are
components of the elongator multi-subunit component of a
novel RNA polymerase II holoenzyme for transcriptional
elongation. This region contains WD40 like repeats.
Length = 903
Score = 25.7 bits (57), Expect = 9.2
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 2 EED------EEKKKKKKKKKKKKKKKKKKKKKKNRVC 32
EED ++ K + KK K K NR+C
Sbjct: 737 EEDVTKTMYKDTLKASDPPGQSKKSGDPKDSKVNRIC 773
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 25.4 bits (56), Expect = 9.7
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKK 28
E+ ++ KK +K + KKKK
Sbjct: 169 AAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|204122 pfam09072, TMA7, Translation machinery associated TMA7. TMA7
plays a role in protein translation. Deletions of the
TMA7 gene results in altered protein synthesis rates.
Length = 63
Score = 24.0 bits (52), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
EED K+K+K++ K K+ K K K
Sbjct: 23 EEDLAFKQKQKEEAKALKELAAKAKGK 49
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.435
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,750,603
Number of extensions: 612156
Number of successful extensions: 13071
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8860
Number of HSP's successfully gapped: 1907
Length of query: 130
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 44
Effective length of database: 7,123,158
Effective search space: 313418952
Effective search space used: 313418952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.1 bits)