RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7070
(130 letters)
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 40.7 bits (94), Expect = 2e-05
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 32 CIGAWLYVFCLTLPPLFGWSCYIPEGFMTSCSWDYM--SRTMSNRAFYLYLLMFGFILPV 89
W+ PPL GWS YIPEG SC DY +N +F +Y+ + FI+P+
Sbjct: 157 VAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPL 216
Query: 90 AVITYCYVFILHVVLAHGKEM 110
VI +CY ++ V +
Sbjct: 217 IVIFFCYGQLVFTVKEAAAQQ 237
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 30.8 bits (70), Expect = 0.031
Identities = 7/33 (21%), Positives = 20/33 (60%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCI 33
+ E+KK+ ++KK+ + +++K ++ + C
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCE 134
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 30.5 bits (69), Expect = 0.046
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNRVCI 33
+ E +K+ K++K K K++ +K K+ CI
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEYGFCI 142
Score = 24.3 bits (53), Expect = 4.9
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKNRVCIGAW 36
+ + + +K+ K++K K K++ +K
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIM 143
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 29.6 bits (66), Expect = 0.095
Identities = 6/27 (22%), Positives = 21/27 (77%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+E++++++ ++K ++ K K+K +K++
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 29.2 bits (65), Expect = 0.13
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRV 31
E +K+++ ++K ++ K K+K +K R+
Sbjct: 306 ENQKRRETEEKMRRAKLAKEKAEKERL 332
Score = 26.5 bits (58), Expect = 0.99
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
+E +K+++ ++K ++ K K+K +
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 23.8 bits (51), Expect = 8.2
Identities = 5/27 (18%), Positives = 16/27 (59%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ K+ +K+++ ++K ++ K K+
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKA 327
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 28.2 bits (63), Expect = 0.11
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRVC 32
K +K K K + + KK + C
Sbjct: 18 AMARAKNLEKAKAAGKGSQLEANKKAMSIQC 48
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 28.3 bits (63), Expect = 0.17
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
ME ++E ++ ++ ++K K ++ R
Sbjct: 102 MESNKENREAHLAAMLERLQEKDKHAEEVR 131
Score = 23.7 bits (51), Expect = 8.0
Identities = 5/27 (18%), Positives = 16/27 (59%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKK 27
+EE ++K + ++++K ++ + K
Sbjct: 44 LEEIQKKLEAAEERRKYQEAELLKHLA 70
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 27.5 bits (61), Expect = 0.37
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRV 31
K K K K +++ K + + +K+ V
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELV 26
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 26.3 bits (58), Expect = 0.66
Identities = 3/24 (12%), Positives = 11/24 (45%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKK 24
++E + + K+ +K++
Sbjct: 78 LKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.6 bits (56), Expect = 1.1
Identities = 2/23 (8%), Positives = 10/23 (43%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKKK 28
++ + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.6 bits (56), Expect = 1.3
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKN 29
K+ + + K+ +K+
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.2 bits (55), Expect = 1.8
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKK 27
+E + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 23.6 bits (51), Expect = 6.4
Identities = 2/23 (8%), Positives = 10/23 (43%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKK 25
++ + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 25.7 bits (56), Expect = 1.2
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKK 28
+ ++E+ + K KKK
Sbjct: 84 DNEKEQITQHIADLSSKAAGTPKKKAV 110
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 25.5 bits (55), Expect = 1.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
+ E E +K+ KK + +++ K K K R
Sbjct: 84 VLEGEVEKEALKKIIEDQQESLNKWKSKGR 113
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 25.9 bits (56), Expect = 1.6
Identities = 3/25 (12%), Positives = 12/25 (48%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
+ K K++ + + + + +K+
Sbjct: 157 ERLPKPKREAFLEANRAELVRFQKE 181
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p)
{Escherichia coli [TaxId: 562]}
Length = 113
Score = 25.3 bits (55), Expect = 1.7
Identities = 4/26 (15%), Positives = 14/26 (53%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKNRVCI 33
KK + ++ + ++K ++ R+ +
Sbjct: 1 KKSARIRRATRARRKLQELGATRLVV 26
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 25.7 bits (56), Expect = 2.0
Identities = 3/27 (11%), Positives = 11/27 (40%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNRV 31
++ + +K++ K K+ +
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRTI 234
Score = 25.7 bits (56), Expect = 2.1
Identities = 3/30 (10%), Positives = 14/30 (46%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNRV 31
+++ + +K++ K K+ + ++
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRTIEKI 237
Score = 23.8 bits (51), Expect = 7.4
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNRVCI 33
K + +K++ K K I
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRTI 234
Score = 23.4 bits (50), Expect = 9.9
Identities = 3/24 (12%), Positives = 10/24 (41%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKNRV 31
+ +K++ K K+ + +
Sbjct: 215 TVDLEMRKQRNKTTKQVRTIEKIT 238
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 24.3 bits (53), Expect = 2.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKK 27
DEE KKK ++ + K+K K +
Sbjct: 69 DEEVKKKLEESNLTEYMKEKIKIR 92
Score = 23.5 bits (51), Expect = 6.2
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 4 DEEKKKKKKKKKKKKKKKKKKKKKK 28
+E+ KKK ++ + K+K K +
Sbjct: 68 SDEEVKKKLEESNLTEYMKEKIKIR 92
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase
{Alicyclobacillus acidocaldarius [TaxId: 405212]}
Length = 271
Score = 25.0 bits (54), Expect = 3.0
Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 32 CIGAWLYVFCLTLPPLFGWSCYIPEGFMTS-CSWDYMSRTMSNRAFYLYLLMFGFILPVA 90
+G + + +PP + + + + + +R + F LP
Sbjct: 100 LVGEYPWEKVPMVPPEIMF---LGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPER 156
Query: 91 V 91
Sbjct: 157 A 157
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 24.3 bits (53), Expect = 3.4
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 6 EKKKKKKKKKKKKKKKKKKKKK 27
K + +++K+++KK KKKKKK
Sbjct: 83 RKIAEIREQKREQKKDKKKKKK 104
Score = 24.3 bits (53), Expect = 3.5
Identities = 10/22 (45%), Positives = 18/22 (81%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKK 28
+K + +++K+++KK KKKKKK
Sbjct: 83 RKIAEIREQKREQKKDKKKKKK 104
Score = 23.6 bits (51), Expect = 5.3
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKK 26
+ + +++K+++KK KKKKKK
Sbjct: 83 RKIAEIREQKREQKKDKKKKKK 104
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
transmembrane domain M {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 472
Score = 24.6 bits (53), Expect = 4.2
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 78 LYLLMFGFILPVAVITYCYVFILHVVLAHG-KEMS 111
+Y L VA I ++ LA G + M+
Sbjct: 178 IYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMA 212
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1,
MRG15 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 23.7 bits (51), Expect = 4.8
Identities = 3/26 (11%), Positives = 15/26 (57%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKK 26
++ + +K+++ +K +++ + K
Sbjct: 58 LKYVDTNLQKQRELQKANQEQYAEGK 83
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 23.6 bits (51), Expect = 4.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 7 KKKKKKKKKKKKKKKKKK 24
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.6 bits (51), Expect = 4.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 8 KKKKKKKKKKKKKKKKKK 25
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.6 bits (51), Expect = 4.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 9 KKKKKKKKKKKKKKKKKK 26
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.6 bits (51), Expect = 4.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 10 KKKKKKKKKKKKKKKKKK 27
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 23.6 bits (51), Expect = 4.9
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 11 KKKKKKKKKKKKKKKKKK 28
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 23.7 bits (51), Expect = 5.2
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ K + + K+ K+K+
Sbjct: 68 KVHLDLWVKSLSPQDRAAYKEYISNKRKS 96
>d1clca2 b.1.18.2 (A:35-134) CelD cellulase, N-terminal domain
{Clostridium thermocellum [TaxId: 1515]}
Length = 100
Score = 23.6 bits (51), Expect = 5.6
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 111 SNLKTTGSYTLLTPGKKNTF 130
S++ G+Y L PG +
Sbjct: 77 SSVNEEGTYYLAVPGVGKSV 96
>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 23.7 bits (51), Expect = 5.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ + + KK KKK ++ K+ KN
Sbjct: 69 KQQNVRGMKKLDNYKKKDQETKRWLKN 95
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 23.3 bits (50), Expect = 5.8
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKK 23
M+ + KKKK+K++K
Sbjct: 64 MQLYPGWSARDNYGKKKKRKREK 86
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 94
Score = 23.6 bits (51), Expect = 6.1
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKKNR 30
E + KK +K K + +++ +R
Sbjct: 58 EHGRGKKIYIRKYKSGVQYRRRTGHR 83
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 23.3 bits (50), Expect = 6.6
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 8 KKKKKKKKKKKKKKKKKKKKKN 29
++ KK+ +KKK K+ +
Sbjct: 5 REPKKRTTRKKKDPNAPKRALS 26
Score = 22.9 bits (49), Expect = 8.8
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKK 23
M E KK+ +KKK K+
Sbjct: 1 MVTPREPKKRTTRKKKDPNAPKR 23
Score = 22.9 bits (49), Expect = 9.6
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 7 KKKKKKKKKKKKKKKKKKKKKKNR 30
++ KK+ +KKK K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRAL 25
>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980
{Cryptosporidium parvum [TaxId: 5807]}
Length = 223
Score = 24.1 bits (52), Expect = 6.6
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 5 EEKKKKKKKKKKKKKKKKKKKKKK 28
EEK +K+K + + + K+
Sbjct: 44 EEKLRKEKSLNNEFIQVIEDIKRD 67
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein
(MIP) {Trypanosoma cruzi [TaxId: 5693]}
Length = 160
Score = 23.6 bits (50), Expect = 7.8
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 3 EDEEKKKKKKKKKKKKKKKKKKKKKK 28
EE+ +K+ + ++K +
Sbjct: 3 SHEERMNNYRKRVGRLFMEQKAAQPD 28
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 80
Score = 23.0 bits (49), Expect = 8.1
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKNR 30
++ + KK K++ KK + K +
Sbjct: 42 WHNDAENKKCTLDKEEAKKVADETAKDGK 70
Score = 22.6 bits (48), Expect = 9.6
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 2 EEDEEKKKKKKKKKKKKKKKKKKKKKKN 29
+ E KK K++ KK + K K
Sbjct: 44 NDAENKKCTLDKEEAKKVADETAKDGKT 71
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 411
Score = 23.9 bits (51), Expect = 8.3
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 1 MEEDEEKKKKKKKKKKKKKKKKKKK----KKKNRVCI 33
+E+ ++ K K+K+ +K + I
Sbjct: 46 LEKAFAAREIKSLASKRKEDLQKITFLSRDISQQFGI 82
>d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 161
Score = 23.5 bits (50), Expect = 9.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 12 KKKKKKKKKKKKKKKKKNRVCIGAWLYVFCLTLPPLF 48
KK + KKKKKK K ++ ++++ CL P F
Sbjct: 81 KKISEILKKKKKKSVKSFQIKNNMFIFINCLIENPAF 117
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.435
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 526,896
Number of extensions: 25533
Number of successful extensions: 880
Number of sequences better than 10.0: 1
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 234
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.5 bits)