BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7073
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 69/110 (62%), Gaps = 9/110 (8%)
Query: 6 KLKA--PTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFD 63
+LKA P K +C+++MGSQ +TT I +TL PKWN + QF IKD+ +DVLC+T+FD
Sbjct: 398 ELKACKPNGKSNPYCEISMGSQSYTTRTIQ-DTLNPKWNFNCQFFIKDLYQDVLCLTLFD 456
Query: 64 KGHYSPDEFLGKTK------RVKGEAINPREPNLLMGSLCSKYVLYKFTV 107
+ +SPD+FLG+T+ R + E+ P LL+ + + V +F +
Sbjct: 457 RDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDL 506
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 11 THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPD 70
+ K FC + +G+ T + N L P+WN F IKD+ DVL +TVFD+ P
Sbjct: 31 SGKSDPFCLLELGNDRLQTHTVYKN-LNPEWNKVFTFPIKDIH-DVLEVTVFDEDGDKPP 88
Query: 71 EFLGKT 76
+FLGK
Sbjct: 89 DFLGKV 94
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 4 GYKLKAPTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFD 63
G L P ++F T S++ T N + P WN + +F++ QE+VL IT+ D
Sbjct: 21 GDMLDTPDPYVELFISTTPDSRKRTRHFN--NDINPVWNETFEFILDPNQENVLEITLMD 78
Query: 64 KGHYSPDEFLG 74
+Y DE LG
Sbjct: 79 -ANYVMDETLG 88
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 4 GYKLKAPTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFD 63
G L P ++F T S++ T N + P WN + +F++ QE+VL IT+ D
Sbjct: 36 GDMLDTPDPYVELFISTTPDSRKRTRHFN--NDINPVWNETFEFILDPNQENVLEITLMD 93
Query: 64 KGHYSPDEFLG 74
+Y DE LG
Sbjct: 94 -ANYVMDETLG 103
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 4 GYKLKAPTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFD 63
G L P ++F T S++ T N + P WN + +F++ QE+VL IT+ D
Sbjct: 36 GDMLDTPDPYVELFISTTPDSRKRTRHFN--NDINPVWNETFEFILDPNQENVLEITLMD 93
Query: 64 KGHYSPDEFLG 74
+Y DE LG
Sbjct: 94 -ANYVMDETLG 103
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 35 NTLEPKWNSSMQF---LIKDVQEDVLCITVFDKGHYSPDEFLGKTK 77
NT P WN ++Q+ +D+Q L I+V D+ + +EF+G+T+
Sbjct: 75 NTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETR 120
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 35 NTLEPKWNSSMQF---LIKDVQEDVLCITVFDKGHYSPDEFLGKTK 77
NT P WN ++Q+ +D+Q L I+V D+ + +EF+G+T+
Sbjct: 73 NTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETR 118
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 36 TLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKT 76
+L PKWN + F + Q+ L VFD+ + D+FLG+
Sbjct: 68 SLNPKWNEEILFRVHP-QQHRLLFEVFDENRLTRDDFLGQV 107
>pdb|4GZ8|A Chain A, Mouse Semaphorin 3a, Domains Sema-Psi-Ig
pdb|4GZ8|B Chain B, Mouse Semaphorin 3a, Domains Sema-Psi-Ig
Length = 667
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 60 TVFDKGHYSPDEF--LGKTKRVKGEAINPREPNLLMGSLCSKYVLYKFTVAEIIQRKFKL 117
T + GH+ D L + G +P +P LL SL LY T A+ + R F +
Sbjct: 125 TYIEVGHHPEDNIFKLQDSHFENGRGKSPYDPKLLTASLLIDGELYSGTAADFMGRDFAI 184
Query: 118 LR 119
R
Sbjct: 185 FR 186
>pdb|4GZA|G Chain G, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
Length = 538
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 60 TVFDKGHYSPDEF--LGKTKRVKGEAINPREPNLLMGSLCSKYVLYKFTVAEIIQRKFKL 117
T + GH+ D L + G +P +P LL SL LY T A+ + R F +
Sbjct: 125 TYIEVGHHPEDNIFKLQDSHFENGRGKSPYDPKLLTASLLIDGELYSGTAADFMGRDFAI 184
Query: 118 LR 119
R
Sbjct: 185 FR 186
>pdb|1Q47|A Chain A, Structure Of The Semaphorin 3a Receptor-Binding Module
pdb|1Q47|B Chain B, Structure Of The Semaphorin 3a Receptor-Binding Module
Length = 495
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 60 TVFDKGHYSPDEF--LGKTKRVKGEAINPREPNLLMGSLCSKYVLYKFTVAEIIQRKFKL 117
T + GH+ D L + G +P +P LL SL LY T A+ + R F +
Sbjct: 117 TYIEVGHHPEDNIFKLQDSHFENGRGKSPYDPKLLTASLLIDGELYSGTAADFMGRDFAI 176
Query: 118 LR 119
R
Sbjct: 177 FR 178
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 36 TLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGK 75
TL PKWN F + +L VFD+ + D+FLG+
Sbjct: 70 TLNPKWNEEFYFRVNPSNHRLL-FEVFDENRLTRDDFLGQ 108
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 7 LKAPTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQED-VLCITVFDKG 65
L P K ++ S++ T +I S TL P+WN S F +K +D L + ++D
Sbjct: 36 LSDPYVKLKLIPDPKNESKQKTKTIRS--TLNPQWNESFTFKLKPSDKDRRLSVEIWDWD 93
Query: 66 HYSPDEFLG 74
+ ++F+G
Sbjct: 94 RTTRNDFMG 102
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 7 LKAPTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQED-VLCITVFDKG 65
L P K ++ S++ T +I S TL P+WN S F +K +D L + ++D
Sbjct: 37 LSDPYVKLKLIPDPKNESKQKTKTIRS--TLNPQWNESFTFKLKPSDKDRRLSVEIWDWD 94
Query: 66 HYSPDEFLG 74
+ ++F+G
Sbjct: 95 RTTRNDFMG 103
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 17 FCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKT 76
+ Q+T +Q+ +++ P+WN + F + + + L +FDK +G
Sbjct: 34 YVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTE-LKAKIFDKD-------VGTE 85
Query: 77 KRVKGEAINPREPNLLMGSL 96
GEA P EP + GS+
Sbjct: 86 DDAVGEATIPLEPVFVEGSI 105
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 7 LKAPTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQED-VLCITVFDKG 65
L P K ++ S++ T +I S TL P+WN S F +K +D L + ++D
Sbjct: 38 LSDPYVKLKLIPDPKNESKQKTKTIRS--TLNPQWNESFTFKLKPSDKDRRLSVEIWDWD 95
Query: 66 HYSPDEFLG 74
+ ++F G
Sbjct: 96 RTTRNDFXG 104
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 36 TLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGK 75
+L PKWN + F + Q + VFD+ + D+FLG+
Sbjct: 56 SLNPKWNEEILFRVLP-QRHRILFEVFDENRLTRDDFLGQ 94
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 24 SQEHTTSIISINTLEPKWNSSMQFLIKDVQED-VLCITVFDKGHYSPDEFLG 74
S++ T +I S +L P+WN + +F +K+ +D L + ++D S ++F+G
Sbjct: 209 SKQKTKTIKS--SLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMG 258
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 36 TLEPKWNSSMQFLIKDVQED-VLCITVFDKGHYSPDEFLG 74
+L P+WN + +F +K+ +D L + ++D S ++F+G
Sbjct: 78 SLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMG 117
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 36 TLEPKWNSSMQFLI---KDVQEDVLCITVFDKGHYSPD--EFLGK 75
TLEPKWN + + ++ +E +L IT++D+ + EFLG+
Sbjct: 65 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGE 109
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 36 TLEPKWNSSMQF---LIKDVQEDVLCITVFDKGHYSPDEFLGK 75
+L P+WN ++ + ++ + + L +TV+D +S ++FLG+
Sbjct: 74 SLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGE 116
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 36 TLEPKWNSSMQFLI---KDVQEDVLCITVFDKGHYSPD--EFLGK 75
TLEPKWN + + ++ +E +L IT++D+ + EFLG+
Sbjct: 68 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGE 112
>pdb|1Y56|A Chain A, Crystal Structure Of L-Proline Dehydrogenase From
P.Horikoshii
Length = 493
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 62 FDKGHYSP--DEF--LGKTKRVKGEA--INPREPNLLMGSLCSKYVLYKF 105
F +G+YSP DE+ + V G A I P N L G L Y+L +F
Sbjct: 327 FRRGYYSPVLDEYHRIKDGIYVAGSAVSIKPHYANYLEGKLVGAYILKEF 376
>pdb|3M5U|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Campylobacter Jejuni
pdb|3M5U|B Chain B, Crystal Structure Of Phosphoserine Aminotransferase From
Campylobacter Jejuni
Length = 361
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 4 GYKLKAPTHKRQVFCQVTMGSQEHTTSIISIN----TLEPKWNSSMQF 47
GY + +H+ +VF +V G+QE + +N L + +S+QF
Sbjct: 35 GYSIXEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQF 82
>pdb|3OA3|A Chain A, Crystal Structure Of A Putative Deoxyribose-Phosphate
Aldolase From Coccidioides Immitis
pdb|3OA3|B Chain B, Crystal Structure Of A Putative Deoxyribose-Phosphate
Aldolase From Coccidioides Immitis
Length = 288
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 37 LEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTKRV 79
+ P + S ++ Q V C+ F +G YS D+ + + KR
Sbjct: 93 VRPDYVSRAVQYLQGTQVGVTCVIGFHEGTYSTDQKVSEAKRA 135
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 36 TLEPKWNSSMQFLI--KDVQEDVLCITVFDKGHYSPDEFLGK-----------TKRVKGE 82
L P +N S F I + ++E + ITV DK S ++ +GK K K
Sbjct: 63 NLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDM 122
Query: 83 AINPREP 89
PR+P
Sbjct: 123 IARPRQP 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,614,029
Number of Sequences: 62578
Number of extensions: 130303
Number of successful extensions: 307
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 26
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)