Query psy7073
Match_columns 127
No_of_seqs 164 out of 1214
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 17:25:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08375 C2_Intersectin C2 doma 99.9 2.7E-25 5.9E-30 143.1 12.5 113 1-118 21-136 (136)
2 cd04016 C2_Tollip C2 domain pr 99.9 1E-23 2.2E-28 133.1 12.2 106 1-116 8-120 (121)
3 cd08682 C2_Rab11-FIP_classI C2 99.9 2.3E-23 5.1E-28 132.4 12.2 107 1-115 5-125 (126)
4 cd04036 C2_cPLA2 C2 domain pre 99.9 5.3E-23 1.1E-27 129.6 11.7 107 1-118 6-118 (119)
5 cd04019 C2C_MCTP_PRT_plant C2 99.9 1.5E-22 3.3E-27 132.2 12.6 112 1-118 6-132 (150)
6 cd08376 C2B_MCTP_PRT C2 domain 99.9 3.3E-22 7.2E-27 125.3 13.0 106 1-117 6-114 (116)
7 KOG1030|consensus 99.9 7E-23 1.5E-27 133.2 8.1 84 1-86 12-98 (168)
8 cd04022 C2A_MCTP_PRT_plant C2 99.9 6E-22 1.3E-26 126.1 11.9 108 1-117 6-125 (127)
9 cd08379 C2D_MCTP_PRT_plant C2 99.9 6E-22 1.3E-26 125.8 11.4 102 1-112 6-125 (126)
10 cd04042 C2A_MCTP_PRT C2 domain 99.9 1.4E-21 3E-26 123.4 12.7 107 1-118 6-120 (121)
11 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 1.7E-21 3.6E-26 123.2 12.8 105 1-116 6-120 (121)
12 cd08681 C2_fungal_Inn1p-like C 99.9 6.3E-22 1.4E-26 124.3 10.2 106 1-116 7-117 (118)
13 cd08391 C2A_C2C_Synaptotagmin_ 99.9 1.5E-21 3.2E-26 122.9 11.4 105 1-116 7-120 (121)
14 cd08373 C2A_Ferlin C2 domain f 99.9 5.2E-21 1.1E-25 121.7 13.4 113 1-123 2-121 (127)
15 cd08378 C2B_MCTP_PRT_plant C2 99.9 1.6E-21 3.5E-26 123.2 10.8 109 1-117 6-119 (121)
16 cd08678 C2_C21orf25-like C2 do 99.9 1E-20 2.2E-25 120.3 14.0 110 1-123 5-123 (126)
17 cd04025 C2B_RasA1_RasA4 C2 dom 99.9 5.4E-21 1.2E-25 121.0 12.0 105 1-115 6-122 (123)
18 cd04024 C2A_Synaptotagmin-like 99.9 7.1E-21 1.5E-25 120.9 12.2 109 1-116 7-127 (128)
19 cd04017 C2D_Ferlin C2 domain f 99.9 2.5E-20 5.3E-25 119.8 13.8 113 1-120 7-134 (135)
20 cd04054 C2A_Rasal1_RasA4 C2 do 99.9 1.6E-20 3.4E-25 118.6 12.3 106 1-116 6-120 (121)
21 cd04039 C2_PSD C2 domain prese 99.8 1.6E-20 3.5E-25 116.5 10.4 87 1-88 7-101 (108)
22 cd08395 C2C_Munc13 C2 domain t 99.8 2.2E-20 4.8E-25 117.7 11.2 94 1-103 6-111 (120)
23 cd08400 C2_Ras_p21A1 C2 domain 99.8 4.9E-20 1.1E-24 117.2 12.9 105 1-117 10-122 (126)
24 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 4.4E-20 9.6E-25 118.1 12.4 112 1-117 6-132 (133)
25 cd08677 C2A_Synaptotagmin-13 C 99.8 1.1E-20 2.5E-25 118.1 8.8 81 1-83 20-107 (118)
26 cd04044 C2A_Tricalbin-like C2 99.8 3E-20 6.4E-25 117.4 10.8 109 1-117 8-122 (124)
27 cd08688 C2_KIAA0528-like C2 do 99.8 3.5E-20 7.6E-25 115.2 10.1 97 1-103 5-108 (110)
28 cd04043 C2_Munc13_fungal C2 do 99.8 1.6E-19 3.5E-24 114.6 13.1 108 1-117 7-120 (126)
29 cd04052 C2B_Tricalbin-like C2 99.8 8.4E-20 1.8E-24 113.7 11.3 99 11-119 10-110 (111)
30 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.5E-19 3.2E-24 113.6 12.2 104 1-117 7-118 (119)
31 cd08381 C2B_PI3K_class_II C2 d 99.8 2.9E-20 6.4E-25 117.6 8.8 83 1-84 19-111 (122)
32 cd04050 C2B_Synaptotagmin-like 99.8 8.1E-20 1.8E-24 112.7 10.0 95 1-105 6-103 (105)
33 cd04038 C2_ArfGAP C2 domain pr 99.8 7.6E-19 1.7E-23 114.1 14.5 118 1-121 8-141 (145)
34 cd04010 C2B_RasA3 C2 domain se 99.8 9.5E-20 2.1E-24 118.7 10.0 95 1-103 6-121 (148)
35 cd08382 C2_Smurf-like C2 domai 99.8 2.2E-19 4.8E-24 113.7 11.3 81 1-84 6-92 (123)
36 cd04046 C2_Calpain C2 domain p 99.8 1.9E-19 4.1E-24 114.4 10.8 103 1-117 9-121 (126)
37 cd04011 C2B_Ferlin C2 domain s 99.8 3.2E-19 6.9E-24 111.0 11.2 96 1-104 10-110 (111)
38 cd04028 C2B_RIM1alpha C2 domai 99.8 2E-19 4.4E-24 116.7 10.6 94 1-104 35-138 (146)
39 cd04018 C2C_Ferlin C2 domain t 99.8 2.7E-19 5.8E-24 116.9 11.2 108 1-112 6-133 (151)
40 cd04014 C2_PKC_epsilon C2 doma 99.8 7.1E-19 1.5E-23 112.6 13.0 106 1-118 10-129 (132)
41 cd04029 C2A_SLP-4_5 C2 domain 99.8 3.3E-19 7.1E-24 113.3 9.8 93 1-102 21-124 (125)
42 cd04041 C2A_fungal C2 domain f 99.8 2.6E-19 5.6E-24 111.5 9.1 83 1-84 7-99 (111)
43 cd08394 C2A_Munc13 C2 domain f 99.8 7.2E-19 1.6E-23 111.1 10.6 80 1-85 8-88 (127)
44 cd08393 C2A_SLP-1_2 C2 domain 99.8 3.7E-19 7.9E-24 113.0 8.5 83 1-84 21-114 (125)
45 cd04051 C2_SRC2_like C2 domain 99.8 6.5E-19 1.4E-23 111.7 9.3 109 1-112 6-125 (125)
46 cd04032 C2_Perforin C2 domain 99.8 6.4E-19 1.4E-23 112.1 8.9 82 1-83 34-118 (127)
47 cd04027 C2B_Munc13 C2 domain s 99.8 1.3E-18 2.9E-23 110.7 10.1 100 1-112 7-125 (127)
48 cd04015 C2_plant_PLD C2 domain 99.8 4.6E-18 1E-22 112.0 12.9 94 12-119 56-157 (158)
49 cd04045 C2C_Tricalbin-like C2 99.8 3.1E-18 6.8E-23 108.0 11.4 99 1-110 7-109 (120)
50 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.1E-18 2.3E-23 110.6 9.3 94 1-103 22-123 (124)
51 cd08675 C2B_RasGAP C2 domain s 99.8 1.3E-18 2.8E-23 112.2 9.6 97 1-106 5-122 (137)
52 cd08392 C2A_SLP-3 C2 domain fi 99.8 1.3E-18 2.8E-23 111.0 9.4 96 1-102 21-127 (128)
53 cd04037 C2E_Ferlin C2 domain f 99.8 2.9E-18 6.4E-23 108.7 10.5 82 1-83 6-92 (124)
54 cd04040 C2D_Tricalbin-like C2 99.8 5.9E-18 1.3E-22 105.7 11.3 95 1-104 5-103 (115)
55 cd08690 C2_Freud-1 C2 domain f 99.8 7.7E-18 1.7E-22 110.2 12.3 107 2-118 9-137 (155)
56 cd08691 C2_NEDL1-like C2 domai 99.8 8.7E-18 1.9E-22 108.2 12.2 106 1-115 7-136 (137)
57 cd04048 C2A_Copine C2 domain f 99.8 1.6E-18 3.4E-23 109.3 8.5 82 2-84 7-102 (120)
58 cd04021 C2_E3_ubiquitin_ligase 99.8 9.7E-18 2.1E-22 106.5 12.1 108 1-115 8-124 (125)
59 cd08385 C2A_Synaptotagmin-1-5- 99.8 2.8E-18 6.2E-23 108.6 9.4 83 1-84 22-112 (124)
60 cd08685 C2_RGS-like C2 domain 99.8 1.8E-18 3.9E-23 109.0 8.2 82 1-83 18-108 (119)
61 cd04049 C2_putative_Elicitor-r 99.8 6.9E-18 1.5E-22 106.8 10.3 84 1-84 7-96 (124)
62 cd08388 C2A_Synaptotagmin-4-11 99.8 8E-18 1.7E-22 107.3 10.5 95 1-102 22-126 (128)
63 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 2.3E-18 5E-23 113.8 8.3 94 1-103 33-137 (162)
64 cd08680 C2_Kibra C2 domain fou 99.8 3E-18 6.5E-23 108.6 8.3 82 1-83 20-112 (124)
65 cd04031 C2A_RIM1alpha C2 domai 99.8 3.9E-18 8.4E-23 108.0 8.7 82 1-83 22-114 (125)
66 KOG0696|consensus 99.8 1.2E-19 2.7E-24 133.1 2.0 100 1-110 186-294 (683)
67 cd08386 C2A_Synaptotagmin-7 C2 99.8 1.2E-17 2.7E-22 105.7 10.3 83 1-84 22-113 (125)
68 cd04030 C2C_KIAA1228 C2 domain 99.8 9.2E-18 2E-22 106.5 9.6 83 1-84 22-116 (127)
69 cd04009 C2B_Munc13-like C2 dom 99.8 5.1E-18 1.1E-22 108.8 8.1 83 1-84 22-118 (133)
70 cd08407 C2B_Synaptotagmin-13 C 99.7 1.5E-17 3.1E-22 107.2 9.2 80 1-81 21-112 (138)
71 cd04026 C2_PKC_alpha_gamma C2 99.7 1.4E-17 3.1E-22 106.3 8.9 100 1-110 19-127 (131)
72 cd04047 C2B_Copine C2 domain s 99.7 1.3E-17 2.9E-22 103.4 7.9 81 2-84 7-100 (110)
73 cd08521 C2A_SLP C2 domain firs 99.7 2.6E-17 5.6E-22 103.9 8.3 82 1-83 20-112 (123)
74 cd08389 C2A_Synaptotagmin-14_1 99.7 4.2E-17 9.2E-22 103.4 8.9 93 1-103 22-123 (124)
75 cd08676 C2A_Munc13-like C2 dom 99.7 4.1E-17 8.9E-22 106.8 8.9 78 1-83 34-143 (153)
76 cd08406 C2B_Synaptotagmin-12 C 99.7 3.9E-17 8.4E-22 105.1 8.0 79 1-80 21-109 (136)
77 cd08384 C2B_Rabphilin_Doc2 C2 99.7 5.2E-17 1.1E-21 103.9 8.6 80 1-81 19-108 (133)
78 cd08390 C2A_Synaptotagmin-15-1 99.7 1.4E-16 3E-21 100.6 10.4 83 1-84 20-111 (123)
79 cd08686 C2_ABR C2 domain in th 99.7 3.6E-16 7.8E-21 97.7 11.3 74 1-80 5-91 (118)
80 cd08405 C2B_Synaptotagmin-7 C2 99.7 1.3E-16 2.8E-21 102.6 8.5 81 1-82 21-111 (136)
81 cd08404 C2B_Synaptotagmin-4 C2 99.7 1.1E-16 2.4E-21 102.9 7.9 80 1-81 21-110 (136)
82 cd00275 C2_PLC_like C2 domain 99.7 9E-16 2E-20 97.3 11.9 103 1-117 8-127 (128)
83 cd08402 C2B_Synaptotagmin-1 C2 99.7 1.5E-16 3.3E-21 102.3 8.2 80 1-81 21-110 (136)
84 PLN03200 cellulose synthase-in 99.7 1E-16 2.2E-21 134.8 9.3 108 1-121 1986-2101(2102)
85 cd08692 C2B_Tac2-N C2 domain s 99.7 5.4E-16 1.2E-20 99.2 10.0 81 1-82 20-110 (135)
86 cd04013 C2_SynGAP_like C2 doma 99.7 2.3E-15 5.1E-20 97.6 12.7 106 1-120 17-141 (146)
87 cd08408 C2B_Synaptotagmin-14_1 99.7 4.1E-16 8.9E-21 100.6 8.4 82 1-83 21-113 (138)
88 cd08383 C2A_RasGAP C2 domain ( 99.7 3.4E-15 7.4E-20 93.3 12.3 103 1-116 6-116 (117)
89 cd08403 C2B_Synaptotagmin-3-5- 99.7 5.2E-16 1.1E-20 99.5 8.1 79 1-80 20-108 (134)
90 cd08410 C2B_Synaptotagmin-17 C 99.7 5.4E-16 1.2E-20 99.7 7.8 78 1-79 20-107 (135)
91 KOG1028|consensus 99.7 1.5E-15 3.2E-20 113.5 11.1 110 1-120 173-296 (421)
92 PLN03008 Phospholipase D delta 99.7 1.7E-15 3.7E-20 119.0 11.8 99 12-122 75-181 (868)
93 cd04035 C2A_Rabphilin_Doc2 C2 99.6 2E-15 4.4E-20 95.4 8.9 82 1-84 21-113 (123)
94 cd00276 C2B_Synaptotagmin C2 d 99.6 1.8E-15 3.9E-20 96.7 7.9 80 1-81 20-109 (134)
95 cd08409 C2B_Synaptotagmin-15 C 99.6 2.6E-15 5.5E-20 96.8 8.2 79 1-80 21-108 (137)
96 PF00168 C2: C2 domain; Inter 99.6 3.4E-15 7.4E-20 87.7 6.8 76 1-77 5-85 (85)
97 KOG1011|consensus 99.5 4.4E-14 9.6E-19 108.3 5.6 110 2-124 302-430 (1283)
98 cd08374 C2F_Ferlin C2 domain s 99.5 5.9E-13 1.3E-17 85.1 8.9 83 1-84 6-123 (133)
99 smart00239 C2 Protein kinase C 99.4 1.5E-12 3.3E-17 78.0 9.3 83 1-84 6-94 (101)
100 KOG2059|consensus 99.4 5.9E-13 1.3E-17 102.3 7.1 113 1-125 11-132 (800)
101 cd00030 C2 C2 domain. The C2 d 99.4 7.5E-12 1.6E-16 74.6 8.9 82 1-83 5-90 (102)
102 COG5038 Ca2+-dependent lipid-b 99.4 2.8E-12 6E-17 103.1 8.0 112 2-123 1047-1166(1227)
103 PLN02223 phosphoinositide phos 99.3 2.9E-11 6.3E-16 91.9 12.0 72 12-84 433-510 (537)
104 KOG1028|consensus 99.3 8.1E-12 1.7E-16 93.6 7.4 79 1-80 304-392 (421)
105 COG5038 Ca2+-dependent lipid-b 99.3 2E-11 4.4E-16 98.2 10.0 112 1-122 442-559 (1227)
106 KOG0169|consensus 99.2 3.2E-11 6.9E-16 93.8 8.4 84 1-84 622-717 (746)
107 PLN02270 phospholipase D alpha 99.2 1E-10 2.2E-15 92.3 11.1 100 12-123 45-151 (808)
108 PLN02952 phosphoinositide phos 99.2 2.8E-10 6.1E-15 88.0 12.3 70 14-84 497-572 (599)
109 PLN02230 phosphoinositide phos 99.2 4E-10 8.8E-15 87.0 10.8 71 13-84 495-571 (598)
110 PLN02222 phosphoinositide phos 99.1 1.1E-09 2.4E-14 84.4 11.8 72 12-84 477-554 (581)
111 KOG1328|consensus 99.1 2.1E-11 4.6E-16 94.5 1.5 106 3-119 122-302 (1103)
112 PLN02228 Phosphoinositide phos 99.1 1.6E-09 3.5E-14 83.4 11.5 71 13-84 457-534 (567)
113 KOG1031|consensus 99.1 4.7E-10 1E-14 85.8 7.4 117 1-120 9-138 (1169)
114 KOG1264|consensus 99.0 1.7E-09 3.7E-14 85.1 9.7 84 1-84 1071-1162(1267)
115 KOG1328|consensus 99.0 1E-10 2.2E-15 90.8 2.8 83 1-84 953-1049(1103)
116 KOG2059|consensus 98.9 9.3E-09 2E-13 79.8 7.1 107 2-118 138-276 (800)
117 cd08689 C2_fungal_Pkc1p C2 dom 98.8 4.7E-08 1E-12 59.8 6.7 76 2-84 6-88 (109)
118 KOG1326|consensus 98.7 2.8E-09 6E-14 85.1 1.3 82 1-83 619-705 (1105)
119 PLN02352 phospholipase D epsil 98.6 4.8E-07 1E-11 71.7 8.9 91 15-123 37-133 (758)
120 PLN02964 phosphatidylserine de 98.3 9.8E-07 2.1E-11 69.3 4.3 73 13-86 67-141 (644)
121 KOG0905|consensus 98.3 5.2E-07 1.1E-11 73.7 2.5 82 2-84 1531-1623(1639)
122 KOG1326|consensus 98.2 2.8E-07 6E-12 74.0 0.8 74 3-77 214-298 (1105)
123 KOG1327|consensus 98.1 7.2E-06 1.6E-10 62.7 5.3 80 3-84 144-236 (529)
124 KOG1013|consensus 98.0 5.4E-06 1.2E-10 59.8 3.2 75 2-77 240-323 (362)
125 KOG1013|consensus 98.0 8.9E-07 1.9E-11 63.7 -1.3 83 1-84 99-192 (362)
126 cd08683 C2_C2cd3 C2 domain fou 97.7 0.0001 2.2E-09 46.8 5.3 73 15-88 34-136 (143)
127 KOG2060|consensus 97.4 9.9E-05 2.1E-09 54.2 2.3 94 1-103 275-378 (405)
128 KOG1011|consensus 97.4 0.00071 1.5E-08 53.4 6.5 83 1-84 1131-1225(1283)
129 cd08397 C2_PI3K_class_III C2 d 97.2 0.0061 1.3E-07 40.2 8.6 86 12-103 28-123 (159)
130 PF15627 CEP76-C2: CEP76 C2 do 96.9 0.032 6.9E-07 36.7 9.8 101 14-122 32-154 (156)
131 KOG3837|consensus 96.8 0.0035 7.5E-08 47.0 5.1 94 15-118 389-503 (523)
132 PF12416 DUF3668: Cep120 prote 96.1 0.11 2.4E-06 38.5 9.8 112 1-119 6-133 (340)
133 cd08684 C2A_Tac2-N C2 domain f 96.0 0.0093 2E-07 35.6 3.1 57 25-84 35-94 (103)
134 KOG1265|consensus 95.9 0.031 6.8E-07 45.7 6.6 77 1-83 709-795 (1189)
135 cd08693 C2_PI3K_class_I_beta_d 95.8 0.13 2.8E-06 34.4 8.3 80 3-83 16-121 (173)
136 cd08380 C2_PI3K_like C2 domain 95.5 0.14 3E-06 33.5 7.5 70 13-83 27-108 (156)
137 KOG1327|consensus 95.4 0.054 1.2E-06 42.1 6.0 58 26-84 42-104 (529)
138 cd08687 C2_PKN-like C2 domain 95.2 0.35 7.6E-06 29.0 8.2 84 12-117 7-92 (98)
139 PF00792 PI3K_C2: Phosphoinosi 95.2 0.22 4.8E-06 32.0 7.6 56 27-83 22-86 (142)
140 cd08398 C2_PI3K_class_I_alpha 95.2 0.42 9.1E-06 31.5 8.9 69 13-83 25-107 (158)
141 KOG1452|consensus 95.0 0.055 1.2E-06 39.5 4.7 101 2-116 58-165 (442)
142 cd04012 C2A_PI3K_class_II C2 d 94.2 0.51 1.1E-05 31.4 7.7 83 13-100 28-132 (171)
143 PF10358 NT-C2: N-terminal C2 92.8 1.6 3.5E-05 27.7 12.2 102 16-124 26-141 (143)
144 PF15625 CC2D2AN-C2: CC2D2A N- 91.7 2.7 5.9E-05 27.9 8.3 68 14-83 37-107 (168)
145 smart00142 PI3K_C2 Phosphoinos 90.3 1.3 2.8E-05 26.8 5.2 51 14-65 32-91 (100)
146 PF14429 DOCK-C2: C2 domain in 89.2 2 4.4E-05 28.8 6.1 55 26-81 60-120 (184)
147 cd08399 C2_PI3K_class_I_gamma 88.9 5.4 0.00012 26.9 8.5 49 16-65 32-88 (178)
148 cd08695 C2_Dock-B C2 domains f 87.0 4.1 8.8E-05 27.8 6.4 54 26-80 54-112 (189)
149 PF11618 DUF3250: Protein of u 86.9 5.3 0.00011 24.6 7.9 91 17-117 2-104 (107)
150 cd08694 C2_Dock-A C2 domains f 83.0 7.7 0.00017 26.6 6.3 55 25-80 53-114 (196)
151 cd08679 C2_DOCK180_related C2 79.8 13 0.00028 24.8 6.6 54 27-81 54-115 (178)
152 cd08696 C2_Dock-C C2 domains f 75.4 22 0.00048 24.0 7.0 55 25-80 54-117 (179)
153 KOG2419|consensus 72.5 0.48 1E-05 38.0 -2.1 57 13-71 304-361 (975)
154 PF01060 DUF290: Transthyretin 72.1 12 0.00027 21.4 4.3 26 55-80 12-38 (80)
155 PF07162 B9-C2: Ciliary basal 65.1 37 0.00081 22.4 8.7 65 13-77 16-98 (168)
156 KOG0694|consensus 64.4 2 4.3E-05 34.7 -0.3 62 13-77 27-89 (694)
157 KOG1329|consensus 62.6 4.9 0.00011 33.5 1.6 69 14-84 138-209 (887)
158 cd08697 C2_Dock-D C2 domains f 60.6 50 0.0011 22.4 7.3 56 25-81 56-123 (185)
159 PTZ00447 apical membrane antig 60.5 73 0.0016 24.2 9.3 90 15-115 75-170 (508)
160 PF14909 SPATA6: Spermatogenes 59.7 46 0.00099 21.6 8.7 75 11-87 17-104 (140)
161 KOG0906|consensus 40.2 26 0.00057 28.7 2.4 52 28-80 67-122 (843)
162 KOG3543|consensus 33.6 2.8E+02 0.0061 23.1 7.3 71 4-77 350-423 (1218)
163 PHA01474 nonstructural protein 32.9 49 0.0011 16.8 1.9 14 114-127 35-48 (52)
164 KOG4028|consensus 32.6 39 0.00085 21.8 1.9 21 55-75 74-94 (175)
165 PF03128 CXCXC: CXCXC repeat; 31.3 29 0.00063 13.1 0.8 9 119-127 3-11 (14)
166 PF14924 DUF4497: Protein of u 29.4 1.4E+02 0.003 18.2 5.7 69 55-124 29-110 (112)
167 KOG1032|consensus 21.9 1.3E+02 0.0029 24.4 3.5 54 11-65 115-168 (590)
No 1
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.93 E-value=2.7e-25 Score=143.09 Aligned_cols=113 Identities=45% Similarity=0.838 Sum_probs=100.5
Q ss_pred CeeeecCCCC--CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK- 77 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~- 77 (127)
|++|++|++. .|.+||||++.++...++|++++ ++.||.||+.|.|.+..+....|.++|||++.+++|++||++.
T Consensus 21 Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~-~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i 99 (136)
T cd08375 21 IVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVS-DTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEI 99 (136)
T ss_pred EEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccC-CCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEE
Confidence 5789999877 78999999999999999999999 9999999999999988766668999999999988999999999
Q ss_pred cccccccCCCCCccCCCceeeEEEecccccceEEEEeEEEE
Q psy7073 78 RVKGEAINPREPNLLMGSLCSKYVLYKFTVAEIIQRKFKLL 118 (127)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~i~~~~~~l~ 118 (127)
++.++...+.. . .+++.+|+.++.+..|+|+| ++.+|
T Consensus 100 ~l~~l~~~~~~-~--~~~~~~~~~~~~~~~g~i~l-~~~~~ 136 (136)
T cd08375 100 RVADILKETKE-S--KGPITKRLLLHEVPTGEVVV-KLDLQ 136 (136)
T ss_pred EHHHhcccccc-C--CCcEEEEeccccccceeEEE-EEEeC
Confidence 99999953433 3 57888999999999999999 88875
No 2
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.91 E-value=1e-23 Score=133.10 Aligned_cols=106 Identities=19% Similarity=0.260 Sum_probs=87.9
Q ss_pred CeeeecCCCC-CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-c
Q psy7073 1 MSSGYKLKAP-THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-R 78 (127)
Q Consensus 1 vi~a~~L~~~-~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~ 78 (127)
|++|++++.. .|++||||++.+|+++++|+++..++.||.|||+|.|.+.... ..|.|+|||++.+++|++||++. +
T Consensus 8 v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~-~~l~~~V~d~d~~~~dd~iG~~~i~ 86 (121)
T cd04016 8 VVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGV-DSIYIEIFDERAFTMDERIAWTHIT 86 (121)
T ss_pred EEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCC-cEEEEEEEeCCCCcCCceEEEEEEE
Confidence 5789988877 6999999999999999999998724799999999999987643 58999999999999999999999 9
Q ss_pred ccc-cccCCCCCccCCCceeeEEEecc----cccceEEEEeEE
Q psy7073 79 VKG-EAINPREPNLLMGSLCSKYVLYK----FTVAEIIQRKFK 116 (127)
Q Consensus 79 l~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~G~i~~~~~~ 116 (127)
+.+ +.. ......|+.|.. ...|+|+| .+.
T Consensus 87 l~~~~~~--------g~~~~~W~~L~~~~~~~~~g~i~l-~l~ 120 (121)
T cd04016 87 IPESVFN--------GETLDDWYSLSGKQGEDKEGMINL-VFS 120 (121)
T ss_pred CchhccC--------CCCccccEeCcCccCCCCceEEEE-EEe
Confidence 974 442 223678888764 45699999 664
No 3
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.91 E-value=2.3e-23 Score=132.39 Aligned_cols=107 Identities=17% Similarity=0.249 Sum_probs=89.7
Q ss_pred CeeeecCCCC--CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEec-----CCCCeEEEEEEEcCCCCCCcee
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKD-----VQEDVLCITVFDKGHYSPDEFL 73 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~-----~~~~~l~v~v~d~~~~~~d~~i 73 (127)
|++|+||+++ .|.+||||++.++..+++|++++ ++.||.|||.|.|.+.. +....|.++|||++.+++|++|
T Consensus 5 V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~-~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~i 83 (126)
T cd08682 5 VLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKE-KTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFL 83 (126)
T ss_pred EEECcCCcCCCCCcCCCceEEEEECCeeeeeeeec-CCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCcee
Confidence 5899999877 67899999999999999999999 99999999999998876 2456899999999998899999
Q ss_pred EEEe-cccccccCCCCCccCCCceeeEEEecc------cccceEEEEeE
Q psy7073 74 GKTK-RVKGEAINPREPNLLMGSLCSKYVLYK------FTVAEIIQRKF 115 (127)
Q Consensus 74 G~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~------~~~G~i~~~~~ 115 (127)
|++. ++.++.... ..+...|+.|.. ...|+|+| .+
T Consensus 84 G~~~i~l~~l~~~~------~~~~~~W~~L~~~~~~~~~~~Gei~l-~~ 125 (126)
T cd08682 84 GQVSIPLNDLDEDK------GRRRTRWFKLESKPGKDDKERGEIEV-DI 125 (126)
T ss_pred EEEEEEHHHhhccC------CCcccEEEECcCCCCCCccccceEEE-Ee
Confidence 9999 999987311 234678888863 23599988 54
No 4
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.90 E-value=5.3e-23 Score=129.55 Aligned_cols=107 Identities=20% Similarity=0.316 Sum_probs=93.0
Q ss_pred CeeeecCCCC--CCCcccEEEEEEC---CeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEE
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMG---SQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGK 75 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g---~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 75 (127)
|++|++|+.. .+.+||||++.++ ..+.+|++++ ++.||.|||.|.|.+.......|.|+|||++.. +|++||+
T Consensus 6 vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~-~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~iG~ 83 (119)
T cd04036 6 VLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIK-NSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDHLGT 83 (119)
T ss_pred EEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceec-CCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcccEE
Confidence 5789999877 6789999999985 3678999999 999999999999988765445799999999988 8999999
Q ss_pred Ee-cccccccCCCCCccCCCceeeEEEecccccceEEEEeEEEE
Q psy7073 76 TK-RVKGEAINPREPNLLMGSLCSKYVLYKFTVAEIIQRKFKLL 118 (127)
Q Consensus 76 ~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~i~~~~~~l~ 118 (127)
+. ++.++.. ......|+.+...+.|+|++ +|+|+
T Consensus 84 ~~~~l~~l~~--------g~~~~~~~~L~~~~~g~l~~-~~~~~ 118 (119)
T cd04036 84 VLFDVSKLKL--------GEKVRVTFSLNPQGKEELEV-EFLLE 118 (119)
T ss_pred EEEEHHHCCC--------CCcEEEEEECCCCCCceEEE-EEEee
Confidence 99 9998873 33578899999888999999 98886
No 5
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.90 E-value=1.5e-22 Score=132.20 Aligned_cols=112 Identities=20% Similarity=0.227 Sum_probs=92.5
Q ss_pred CeeeecCCCC--CCCcccEEEEEECCeEEEeEEEeCC-CCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGSQEHTTSIISIN-TLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK 77 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~~~~~T~~~~~~-~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~ 77 (127)
|++|++|+++ .|.+||||++.++.+..+|+++. + +.||.|||.|.|.+.++....|.++|||++..++|++||++.
T Consensus 6 Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~-~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~ 84 (150)
T cd04019 6 VIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQ-TRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAV 84 (150)
T ss_pred EEEeECCCCCCCCCCCCeEEEEEECCEEeeeEecc-CCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEE
Confidence 5789999887 78999999999999999999997 5 699999999999987765568999999999888899999999
Q ss_pred -cccccccCCCCCccCCCceeeEEEeccc-----------ccceEEEEeEEEE
Q psy7073 78 -RVKGEAINPREPNLLMGSLCSKYVLYKF-----------TVAEIIQRKFKLL 118 (127)
Q Consensus 78 -~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~G~i~~~~~~l~ 118 (127)
+++++...... ..+...|+.|... ..|+|+| ++.|.
T Consensus 85 i~L~~l~~~~~~----~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l-~i~~~ 132 (150)
T cd04019 85 IPLNDIERRVDD----RPVPSRWFSLERPGGAMEQKKKRKFASRIHL-RLCLD 132 (150)
T ss_pred EEHHHCcccCCC----CccCCceEECcCCCCcccccccCcccccEEE-EEEec
Confidence 99998742211 2356788887643 3499999 77654
No 6
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.89 E-value=3.3e-22 Score=125.25 Aligned_cols=106 Identities=20% Similarity=0.333 Sum_probs=91.7
Q ss_pred CeeeecCCCC--CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK- 77 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~- 77 (127)
|++|++|+.. .+.+|||+++++++.+.+|++++ ++.||.|||.|.|.+.......|.|+|||++..++|++||++.
T Consensus 6 v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~ 84 (116)
T cd08376 6 LVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCS-KTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEI 84 (116)
T ss_pred EEEEECCCCCCCCCCCCcEEEEEECCEeEeccccc-CCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEE
Confidence 5789999887 68899999999998899999999 9999999999999987765578999999999988999999999
Q ss_pred cccccccCCCCCccCCCceeeEEEecccccceEEEEeEEE
Q psy7073 78 RVKGEAINPREPNLLMGSLCSKYVLYKFTVAEIIQRKFKL 117 (127)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~i~~~~~~l 117 (127)
++.++.. ......|+.|... .|+|++ .+.+
T Consensus 85 ~l~~l~~--------~~~~~~w~~L~~~-~G~~~~-~~~~ 114 (116)
T cd08376 85 DLSALPR--------EQTHSLELELEDG-EGSLLL-LLTL 114 (116)
T ss_pred eHHHCCC--------CCceEEEEEccCC-CcEEEE-EEEe
Confidence 9999873 2346788888765 699988 6554
No 7
>KOG1030|consensus
Probab=99.89 E-value=7e-23 Score=133.23 Aligned_cols=84 Identities=26% Similarity=0.517 Sum_probs=76.7
Q ss_pred CeeeecCCCC-C-CCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-
Q psy7073 1 MSSGYKLKAP-T-HKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK- 77 (127)
Q Consensus 1 vi~a~~L~~~-~-g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~- 77 (127)
|++|.+|... . ++|||||.+.+|+++.+|++++ +++||.|||.|.|.+.++. ..|+++|||+|.+++||++|+++
T Consensus 12 v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~-~n~NPeWNe~ltf~v~d~~-~~lkv~VyD~D~fs~dD~mG~A~I 89 (168)
T KOG1030|consen 12 VKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVY-KNLNPEWNEELTFTVKDPN-TPLKVTVYDKDTFSSDDFMGEATI 89 (168)
T ss_pred EEeecCeeeeccccCCCCeEEEEECCeeeeeeeec-CCCCCcccceEEEEecCCC-ceEEEEEEeCCCCCcccccceeee
Confidence 4678888777 4 8999999999999999999999 9999999999999999986 69999999999999999999999
Q ss_pred cccccccCC
Q psy7073 78 RVKGEAINP 86 (127)
Q Consensus 78 ~l~~~~~~~ 86 (127)
++..++...
T Consensus 90 ~l~p~~~~~ 98 (168)
T KOG1030|consen 90 PLKPLLEAQ 98 (168)
T ss_pred ccHHHHHHh
Confidence 999887533
No 8
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.88 E-value=6e-22 Score=126.07 Aligned_cols=108 Identities=20% Similarity=0.325 Sum_probs=88.7
Q ss_pred CeeeecCCCC--CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCC---CCeEEEEEEEcCCCC-CCceeE
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQ---EDVLCITVFDKGHYS-PDEFLG 74 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~---~~~l~v~v~d~~~~~-~d~~iG 74 (127)
|++|++|.+. .|.+||||+++++.++++|++++ ++.||.|||.|.|.+..+. ...|.|+|||++.++ ++++||
T Consensus 6 vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~-~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG 84 (127)
T cd04022 6 VVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKP-KDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLG 84 (127)
T ss_pred EEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEc-CCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeee
Confidence 5889999877 68899999999999999999999 9999999999999987542 247999999999876 899999
Q ss_pred EEe-cccccccCCCCCccCCCceeeEEEeccc-----ccceEEEEeEEE
Q psy7073 75 KTK-RVKGEAINPREPNLLMGSLCSKYVLYKF-----TVAEIIQRKFKL 117 (127)
Q Consensus 75 ~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~G~i~~~~~~l 117 (127)
++. ++.++.. . ......|+.|... .+|+|+| ++.+
T Consensus 85 ~v~i~l~~l~~-~------~~~~~~w~~L~~~~~~~~~~G~l~l-~~~~ 125 (127)
T cd04022 85 RVRISGTSFVP-P------SEAVVQRYPLEKRGLFSRVRGEIGL-KVYI 125 (127)
T ss_pred EEEEcHHHcCC-C------CCccceEeEeeeCCCCCCccEEEEE-EEEE
Confidence 999 9999983 1 1234566766632 5799999 6665
No 9
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.88 E-value=6e-22 Score=125.79 Aligned_cols=102 Identities=22% Similarity=0.407 Sum_probs=84.7
Q ss_pred Ceeeec---CCCC--CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCC------C
Q psy7073 1 MSSGYK---LKAP--THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYS------P 69 (127)
Q Consensus 1 vi~a~~---L~~~--~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~------~ 69 (127)
|++|++ |+.+ .|.+||||++.+|.++.+|++++ ++.||.|||+|.|.+..+. ..|.|+|||++.++ +
T Consensus 6 v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~-~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~~~~~~~~ 83 (126)
T cd08379 6 ILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVE-DSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSHWKEAVQP 83 (126)
T ss_pred EEEeECCccccccccCCCCCeeEEEEECCEEeEcCccc-CCCCCcceeEEEEEecCCC-CEEEEEEEECCCccccccCCC
Confidence 578999 6655 78999999999999999999999 9999999999999987764 48999999999874 8
Q ss_pred CceeEEEe-cccccccCCCCCccCCCceeeEEEeccc------ccceEEE
Q psy7073 70 DEFLGKTK-RVKGEAINPREPNLLMGSLCSKYVLYKF------TVAEIIQ 112 (127)
Q Consensus 70 d~~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~------~~G~i~~ 112 (127)
|++||++. ++.++.. ......|+.|... ..|+|+.
T Consensus 84 dd~lG~~~i~l~~l~~--------~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 84 DVLIGKVRIRLSTLED--------DRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CceEEEEEEEHHHccC--------CCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 99999999 9999883 2345778877733 3466654
No 10
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.88 E-value=1.4e-21 Score=123.36 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=90.2
Q ss_pred CeeeecCCCC--CCCcccEEEEEECC-eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGS-QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK 77 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~-~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~ 77 (127)
|++|++|+.. .|.+||||++.++. ..++|+++. ++.||.|||.|.|.+..+. ..|.++|||++..++|++||++.
T Consensus 6 v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~-~~l~~~v~D~d~~~~~~~iG~~~ 83 (121)
T cd04042 6 LKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIY-KNLNPVWDEKFTLPIEDVT-QPLYIKVFDYDRGLTDDFMGSAF 83 (121)
T ss_pred EEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeecc-CCCCCccceeEEEEecCCC-CeEEEEEEeCCCCCCCcceEEEE
Confidence 5789999877 68999999999975 678999999 9999999999999987654 68999999999998999999999
Q ss_pred -cccccccCCCCCccCCCceeeEEEeccc----ccceEEEEeEEEE
Q psy7073 78 -RVKGEAINPREPNLLMGSLCSKYVLYKF----TVAEIIQRKFKLL 118 (127)
Q Consensus 78 -~l~~~~~~~~~~~~~~~~~~~~~~l~~~----~~G~i~~~~~~l~ 118 (127)
++.++.. ..+...|+.|.+. ..|+|.+ .+.+.
T Consensus 84 ~~l~~l~~--------~~~~~~~~~L~~~~~~~~~G~l~l-~~~~~ 120 (121)
T cd04042 84 VDLSTLEL--------NKPTEVKLKLEDPNSDEDLGYISL-VVTLT 120 (121)
T ss_pred EEHHHcCC--------CCCeEEEEECCCCCCccCceEEEE-EEEEC
Confidence 9999884 3346678877633 3599999 77663
No 11
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.88 E-value=1.7e-21 Score=123.17 Aligned_cols=105 Identities=14% Similarity=0.263 Sum_probs=87.8
Q ss_pred CeeeecCCCC---CCCcccEEEEEECC-eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEE
Q psy7073 1 MSSGYKLKAP---THKRQVFCQVTMGS-QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKT 76 (127)
Q Consensus 1 vi~a~~L~~~---~g~sdpyv~i~~g~-~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~ 76 (127)
|++|+||+++ .|.+||||.++++. ...+|++++ ++.||.|||.|.|.+.... ..|.+.|||++.+++|++||++
T Consensus 6 v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~-kt~~P~WnE~F~f~v~~~~-~~l~~~v~d~~~~~~~~~iG~~ 83 (121)
T cd08401 6 IGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVE-KSLCPFFGEDFYFEIPRTF-RHLSFYIYDRDVLRRDSVIGKV 83 (121)
T ss_pred EEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEE-CCCCCccCCeEEEEcCCCC-CEEEEEEEECCCCCCCceEEEE
Confidence 5789999886 46889999999975 468999999 9999999999999987543 6899999999999999999999
Q ss_pred e-cccccccCCCCCccCCCceeeEEEeccc-----ccceEEEEeEE
Q psy7073 77 K-RVKGEAINPREPNLLMGSLCSKYVLYKF-----TVAEIIQRKFK 116 (127)
Q Consensus 77 ~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~G~i~~~~~~ 116 (127)
. +++++.. .+....|+.|... .+|+|++ .+.
T Consensus 84 ~i~l~~l~~--------~~~~~~w~~L~~~~~~~~~~G~i~l-~~~ 120 (121)
T cd08401 84 AIKKEDLHK--------YYGKDTWFPLQPVDADSEVQGKVHL-ELR 120 (121)
T ss_pred EEEHHHccC--------CCCcEeeEEEEccCCCCcccEEEEE-EEE
Confidence 9 9999884 3345778887642 3699999 654
No 12
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.88 E-value=6.3e-22 Score=124.34 Aligned_cols=106 Identities=17% Similarity=0.323 Sum_probs=86.4
Q ss_pred CeeeecCCCC--CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK- 77 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~- 77 (127)
|++|++|++. .+.+||||+++++..+.+|+++..++.||.|||.|.|.+.......|.|+|||++..+ |++||++.
T Consensus 7 v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~iG~~~~ 85 (118)
T cd08681 7 VLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDLIGDTEV 85 (118)
T ss_pred EEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-CcceEEEEE
Confidence 5789999887 7889999999999888999988624789999999999988765568999999999876 99999999
Q ss_pred cccccccCCCCCccCCCceeeEEEec--ccccceEEEEeEE
Q psy7073 78 RVKGEAINPREPNLLMGSLCSKYVLY--KFTVAEIIQRKFK 116 (127)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~l~--~~~~G~i~~~~~~ 116 (127)
++.++.. .. ....|+.+. ....|+|++ ++.
T Consensus 86 ~l~~~~~-~~-------~~~~w~~L~~~~~~~G~i~l-~l~ 117 (118)
T cd08681 86 DLSPALK-EG-------EFDDWYELTLKGRYAGEVYL-ELT 117 (118)
T ss_pred ecHHHhh-cC-------CCCCcEEeccCCcEeeEEEE-EEE
Confidence 9999874 11 235666665 345699988 654
No 13
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.88 E-value=1.5e-21 Score=122.95 Aligned_cols=105 Identities=23% Similarity=0.372 Sum_probs=90.7
Q ss_pred CeeeecCCCCC--------CCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCce
Q psy7073 1 MSSGYKLKAPT--------HKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEF 72 (127)
Q Consensus 1 vi~a~~L~~~~--------g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~ 72 (127)
|++|++|+... |.+||||+++++...++|++++ ++.+|.|||.|.|.+.......|.++|||++.. ++++
T Consensus 7 v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~-~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~-~~~~ 84 (121)
T cd08391 7 VIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIK-ENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD-KDDF 84 (121)
T ss_pred EEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccC-CCCCCcccceEEEEeCCCCCCEEEEEEEecCCC-CCCc
Confidence 57899998662 5789999999998999999999 999999999999998765557899999999987 8999
Q ss_pred eEEEe-cccccccCCCCCccCCCceeeEEEecccccceEEEEeEE
Q psy7073 73 LGKTK-RVKGEAINPREPNLLMGSLCSKYVLYKFTVAEIIQRKFK 116 (127)
Q Consensus 73 iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~i~~~~~~ 116 (127)
||++. ++.++.. .+....|+.|++..+|+|++ +++
T Consensus 85 iG~~~i~l~~l~~--------~~~~~~w~~L~~~~~G~~~~-~~~ 120 (121)
T cd08391 85 LGRLSIDLGSVEK--------KGFIDEWLPLEDVKSGRLHL-KLE 120 (121)
T ss_pred EEEEEEEHHHhcc--------cCccceEEECcCCCCceEEE-EEe
Confidence 99999 9999884 33467899999888999998 543
No 14
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.87 E-value=5.2e-21 Score=121.68 Aligned_cols=113 Identities=20% Similarity=0.243 Sum_probs=94.4
Q ss_pred CeeeecCCCCCCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCCCceeEEEe-
Q psy7073 1 MSSGYKLKAPTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSPDEFLGKTK- 77 (127)
Q Consensus 1 vi~a~~L~~~~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d~~iG~~~- 77 (127)
|++|++|+...|.+||||+++++...++|++++ ++.+|.|||.|.|.+..+ ....|.++|||++..++|++||++.
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~-~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~ 80 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVKKKTRVLE-NELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV 80 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEeeecceeC-CCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence 689999988778899999999988889999999 999999999999998654 3468999999999988999999999
Q ss_pred cccccccCCCCCccCCCceeeEEEeccc----ccceEEEEeEEEEEeccc
Q psy7073 78 RVKGEAINPREPNLLMGSLCSKYVLYKF----TVAEIIQRKFKLLRFDRE 123 (127)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~----~~G~i~~~~~~l~~~~~~ 123 (127)
++.++.. .+....|+.|.+. ..|+|++ .+.+.+.+..
T Consensus 81 ~l~~l~~--------~~~~~~~~~L~~~~~~~~~~~l~l-~~~~~~~~~~ 121 (127)
T cd08373 81 SLQDLVS--------EGLLEVTEPLLDSNGRPTGATISL-EVSYQPPDGA 121 (127)
T ss_pred EhhHccc--------CCceEEEEeCcCCCCCcccEEEEE-EEEEeCCCCc
Confidence 9999984 3345667777522 2489999 8887776653
No 15
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.87 E-value=1.6e-21 Score=123.22 Aligned_cols=109 Identities=21% Similarity=0.282 Sum_probs=89.0
Q ss_pred CeeeecCCCCCCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-cc
Q psy7073 1 MSSGYKLKAPTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-RV 79 (127)
Q Consensus 1 vi~a~~L~~~~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l 79 (127)
|++|++|+.+ .+||||++.++..+.+|++++ ++.||.|||+|.|.+..+....|.++|||++.. ++++||++. ++
T Consensus 6 Vi~a~~L~~~--~~Dpyv~v~l~~~~~kT~v~~-~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~~i~l 81 (121)
T cd08378 6 VVKARGLPAN--SNDPVVEVKLGNYKGSTKAIE-RTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGVCFDL 81 (121)
T ss_pred EEEecCCCcc--cCCCEEEEEECCccccccccC-CCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeEEEEh
Confidence 5789999887 789999999998899999999 999999999999998776557899999999987 789999999 99
Q ss_pred cccccCCCCCccCCCceeeEEEeccc----ccceEEEEeEEE
Q psy7073 80 KGEAINPREPNLLMGSLCSKYVLYKF----TVAEIIQRKFKL 117 (127)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~----~~G~i~~~~~~l 117 (127)
.++...... . ......|+.|... .+|+|.| .+.+
T Consensus 82 ~~l~~~~~~-~--~~~~~~W~~L~~~~~~~~~G~i~l-~~~~ 119 (121)
T cd08378 82 SEVPTRVPP-D--SPLAPQWYRLEDKKGGRVGGELML-AVWF 119 (121)
T ss_pred HhCcCCCCC-C--CCCCcceEEccCCCCCccceEEEE-EEEe
Confidence 998743221 1 2235678887644 3599988 5543
No 16
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.87 E-value=1e-20 Score=120.25 Aligned_cols=110 Identities=20% Similarity=0.261 Sum_probs=88.3
Q ss_pred CeeeecCCCCCCCcccEEEEEEC--CeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-
Q psy7073 1 MSSGYKLKAPTHKRQVFCQVTMG--SQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK- 77 (127)
Q Consensus 1 vi~a~~L~~~~g~sdpyv~i~~g--~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~- 77 (127)
|++|++|+...|.+||||+++++ ..+.+|++++ ++.||.|||.|.|.+... ...|.|+|||++..++|++||++.
T Consensus 5 v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~~~~~~lG~~~i 82 (126)
T cd08678 5 NIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQK-NTSNPFWDEHFLFELSPN-SKELLFEVYDNGKKSDSKFLGLAIV 82 (126)
T ss_pred EEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEe-cCCCCccCceEEEEeCCC-CCEEEEEEEECCCCCCCceEEEEEE
Confidence 57899997767899999999996 3568999999 999999999999998643 468999999999988999999999
Q ss_pred cccccccCCCCCccCCCceeeEEEecc------cccceEEEEeEEEEEeccc
Q psy7073 78 RVKGEAINPREPNLLMGSLCSKYVLYK------FTVAEIIQRKFKLLRFDRE 123 (127)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~l~~------~~~G~i~~~~~~l~~~~~~ 123 (127)
++.++.. .. ....|+.+.. ...|+|.+ ++++++.+
T Consensus 83 ~l~~l~~-~~-------~~~~~~~L~~~~~~~~~~~G~l~l---~~~~~~~~ 123 (126)
T cd08678 83 PFDELRK-NP-------SGRQIFPLQGRPYEGDSVSGSITV---EFLFMEPA 123 (126)
T ss_pred eHHHhcc-CC-------ceeEEEEecCCCCCCCCcceEEEE---EEEEeccc
Confidence 9999984 21 1345666652 24699988 55556544
No 17
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.87 E-value=5.4e-21 Score=120.96 Aligned_cols=105 Identities=19% Similarity=0.286 Sum_probs=86.1
Q ss_pred CeeeecCCCC--CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK- 77 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~- 77 (127)
|++|++|.++ .+.+||||+++++....+|++++ ++.||.|||+|.|.+.......|.|+|||++..+++++||++.
T Consensus 6 vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~ 84 (123)
T cd04025 6 VLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVK-KSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVF 84 (123)
T ss_pred EEEeeCCCCCCCCCCcCceEEEEECCEEEeceeec-CCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEE
Confidence 5789999877 67899999999998889999999 9999999999999987765568999999999998999999999
Q ss_pred cccccccCCCCCccCCCceeeEEEec---------ccccceEEEEeE
Q psy7073 78 RVKGEAINPREPNLLMGSLCSKYVLY---------KFTVAEIIQRKF 115 (127)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~G~i~~~~~ 115 (127)
++.++... +....|+.+. ....|.|++ .+
T Consensus 85 ~l~~l~~~--------~~~~~w~~L~~~~~~~~~~~~~~G~l~~-~~ 122 (123)
T cd04025 85 SIQTLQQA--------KQEEGWFRLLPDPRAEEESGGNLGSLRL-KV 122 (123)
T ss_pred EHHHcccC--------CCCCCEEECCCCCCCCccccCceEEEEE-Ee
Confidence 99998741 1234566554 223488877 54
No 18
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.86 E-value=7.1e-21 Score=120.94 Aligned_cols=109 Identities=25% Similarity=0.383 Sum_probs=90.3
Q ss_pred CeeeecCCCC----CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEE
Q psy7073 1 MSSGYKLKAP----THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKT 76 (127)
Q Consensus 1 vi~a~~L~~~----~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~ 76 (127)
|++|++|+.. .+.+||||++.++..+.+|++++ ++.+|.||+.|.|.+..+....|.|+|||++..+++++||++
T Consensus 7 v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~-~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~ 85 (128)
T cd04024 7 VVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIP-NTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEF 85 (128)
T ss_pred EEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceec-CCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEE
Confidence 5789999765 46889999999998999999999 999999999999999875557999999999998889999999
Q ss_pred e-cccccccCCCCCccCCCceeeEEEeccc-------ccceEEEEeEE
Q psy7073 77 K-RVKGEAINPREPNLLMGSLCSKYVLYKF-------TVAEIIQRKFK 116 (127)
Q Consensus 77 ~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~G~i~~~~~~ 116 (127)
. ++.++.. ... .+....|+.|.+. .+|+|+| ++.
T Consensus 86 ~i~l~~~~~-~~~----~~~~~~w~~L~~~~~~~~~~~~G~i~l-~~~ 127 (128)
T cd04024 86 DIALEEVFA-DGK----TGQSDKWITLKSTRPGKTSVVSGEIHL-QFS 127 (128)
T ss_pred EEEHHHhhc-ccc----cCccceeEEccCcccCccccccceEEE-EEE
Confidence 9 9999984 211 2345677877644 4799988 653
No 19
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.86 E-value=2.5e-20 Score=119.84 Aligned_cols=113 Identities=20% Similarity=0.424 Sum_probs=89.8
Q ss_pred CeeeecCCCC--CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecC---------CCCeEEEEEEEcCCCCC
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDV---------QEDVLCITVFDKGHYSP 69 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~---------~~~~l~v~v~d~~~~~~ 69 (127)
|++|++|.++ .|.+||||++.++..+.+|++++ ++.||.|||.|.|..... ....|.++|||++..++
T Consensus 7 V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~-~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~ 85 (135)
T cd04017 7 IYQARDLLAADKSGLSDPFARVSFLNQSQETEVIK-ETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGK 85 (135)
T ss_pred EEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEc-CCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCC
Confidence 5789999877 78899999999998899999999 999999999999975322 12468999999999999
Q ss_pred CceeEEEe--cccccccCCCCCccCCCceeeEEEec--ccccceEEEEeEEEEEe
Q psy7073 70 DEFLGKTK--RVKGEAINPREPNLLMGSLCSKYVLY--KFTVAEIIQRKFKLLRF 120 (127)
Q Consensus 70 d~~iG~~~--~l~~~~~~~~~~~~~~~~~~~~~~l~--~~~~G~i~~~~~~l~~~ 120 (127)
|++||++. ++..+.. ... ..+..+|+.|. ....|+|++ .|+|...
T Consensus 86 d~~iG~~~i~~~~~~~~-~~~----~~~~~~W~~L~~~~~~~Geil~-~~~~~~~ 134 (135)
T cd04017 86 DEFLGRSVAKPLVKLDL-EED----FPPKLQWFPIYKGGQSAGELLA-AFELIEV 134 (135)
T ss_pred CccceEEEeeeeeeccc-CCC----CCCCceEEEeecCCCchhheeE-EeEEEEe
Confidence 99999997 5544442 111 34677888876 334699999 9998653
No 20
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.86 E-value=1.6e-20 Score=118.65 Aligned_cols=106 Identities=19% Similarity=0.255 Sum_probs=86.9
Q ss_pred CeeeecCCCC--CCCcccEEEEEECCe-EEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGSQ-EHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK 77 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~~-~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~ 77 (127)
|++|++|.++ .|.+||||++.++.. ..+|++++ ++.||.|||.|.|.+.... ..|.++|||++.+++|++||++.
T Consensus 6 vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~-~t~nP~Wne~f~~~~~~~~-~~l~v~v~d~~~~~~d~~iG~~~ 83 (121)
T cd04054 6 IVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVW-KTLNPFWGEEYTVHLPPGF-HTVSFYVLDEDTLSRDDVIGKVS 83 (121)
T ss_pred EEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEc-CCCCCcccceEEEeeCCCC-CEEEEEEEECCCCCCCCEEEEEE
Confidence 5789999887 788999999999754 57999999 9999999999999886543 68999999999999999999999
Q ss_pred -cccccccCCCCCccCCCceeeEEEecccc-----cceEEEEeEE
Q psy7073 78 -RVKGEAINPREPNLLMGSLCSKYVLYKFT-----VAEIIQRKFK 116 (127)
Q Consensus 78 -~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~G~i~~~~~~ 116 (127)
+++++.. . ......|+.|.... .|+|++ .++
T Consensus 84 ~~~~~~~~-~------~~~~~~W~~L~~~~~~~~~~G~i~l-~~~ 120 (121)
T cd04054 84 LTREVISA-H------PRGIDGWMNLTEVDPDEEVQGEIHL-ELS 120 (121)
T ss_pred EcHHHhcc-C------CCCCCcEEECeeeCCCCccccEEEE-EEE
Confidence 9888763 1 12356788776533 699988 654
No 21
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.85 E-value=1.6e-20 Score=116.46 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=75.0
Q ss_pred CeeeecCCCCC------CCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCC-CCeEEEEEEEcCCCCCCcee
Q psy7073 1 MSSGYKLKAPT------HKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQ-EDVLCITVFDKGHYSPDEFL 73 (127)
Q Consensus 1 vi~a~~L~~~~------g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~-~~~l~v~v~d~~~~~~d~~i 73 (127)
|++|++|++.. +.+||||+++++..+++|++++ ++.||.|||.|.|.+.... ...|.++|||++..++|++|
T Consensus 7 v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~-~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~I 85 (108)
T cd04039 7 IKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRR-HTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYV 85 (108)
T ss_pred EEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeec-CCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcce
Confidence 57899998761 3479999999998899999999 9999999999999886542 34799999999999999999
Q ss_pred EEEe-cccccccCCCC
Q psy7073 74 GKTK-RVKGEAINPRE 88 (127)
Q Consensus 74 G~~~-~l~~~~~~~~~ 88 (127)
|++. +|.++.....+
T Consensus 86 G~~~l~L~~l~~~~~~ 101 (108)
T cd04039 86 ATGSLSVQELLNAAPQ 101 (108)
T ss_pred EEEEEEHHHHHhhCCC
Confidence 9999 99999964443
No 22
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.85 E-value=2.2e-20 Score=117.67 Aligned_cols=94 Identities=26% Similarity=0.313 Sum_probs=77.4
Q ss_pred CeeeecCCCC-CCCcccEEEEEE-C----C--eEEEeEEEeCCCCCCeEccEEEEEEecC---CCCeEEEEEEEcCCCCC
Q psy7073 1 MSSGYKLKAP-THKRQVFCQVTM-G----S--QEHTTSIISINTLEPKWNSSMQFLIKDV---QEDVLCITVFDKGHYSP 69 (127)
Q Consensus 1 vi~a~~L~~~-~g~sdpyv~i~~-g----~--~~~~T~~~~~~~~~P~w~e~~~f~~~~~---~~~~l~v~v~d~~~~~~ 69 (127)
|++|++|+.. .|.+||||++++ | . ++++|+++. ++.||.|||+|.|.+... ....|.+.|||++..++
T Consensus 6 Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~-~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~ 84 (120)
T cd08395 6 VVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKN-NNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARD 84 (120)
T ss_pred EEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEec-CCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCC
Confidence 5899999887 689999999997 4 2 357899998 999999999999998743 23469999999998888
Q ss_pred CceeEEEe-cccccccCCCCCccCCCceeeEEEec
Q psy7073 70 DEFLGKTK-RVKGEAINPREPNLLMGSLCSKYVLY 103 (127)
Q Consensus 70 d~~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~ 103 (127)
|++||++. ++.++.. .+....|+.|.
T Consensus 85 dd~IG~~~l~l~~~~~--------~~~~~~w~~L~ 111 (120)
T cd08395 85 DRLVGVTVLQLRDIAQ--------AGSCACWLPLG 111 (120)
T ss_pred CCEEEEEEEEHHHCcC--------CCcEEEEEECc
Confidence 99999999 9999994 23356677664
No 23
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.85 E-value=4.9e-20 Score=117.21 Aligned_cols=105 Identities=13% Similarity=0.182 Sum_probs=83.8
Q ss_pred CeeeecCCCCCCCcccEEEEEECC-eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-c
Q psy7073 1 MSSGYKLKAPTHKRQVFCQVTMGS-QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-R 78 (127)
Q Consensus 1 vi~a~~L~~~~g~sdpyv~i~~g~-~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~ 78 (127)
|++|+||++. +.+||||++.++. +..+|++ + ++.||.|||.|.|.+..+....+.|.|||++..++|++||++. +
T Consensus 10 Vi~A~~L~~~-~~~DPYv~v~l~~~~~~kT~v-~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~ 86 (126)
T cd08400 10 VLEAHKLPVK-HVPHPYCVISLNEVKVARTKV-R-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQ 86 (126)
T ss_pred EEEeeCCCCC-CCCCeeEEEEECCEeEEEeec-C-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEE
Confidence 5899999874 5789999999976 4568886 5 6799999999999865543357899999999999999999999 9
Q ss_pred ccccccCCCCCccCCCceeeEEEeccc------ccceEEEEeEEE
Q psy7073 79 VKGEAINPREPNLLMGSLCSKYVLYKF------TVAEIIQRKFKL 117 (127)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~l~~~------~~G~i~~~~~~l 117 (127)
+.++.. .+....|+.+... ..|+|++ ++.+
T Consensus 87 l~~l~~--------~~~~~~W~~L~~~~~~~~~~~G~i~l-~l~~ 122 (126)
T cd08400 87 LSKLQN--------GQETDEWYPLSSASPLKGGEWGSLRI-RARY 122 (126)
T ss_pred HhHccC--------CCcccEeEEcccCCCCCCCcCcEEEE-EEEE
Confidence 998873 2345778888633 3499988 6555
No 24
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.85 E-value=4.4e-20 Score=118.14 Aligned_cols=112 Identities=19% Similarity=0.323 Sum_probs=87.8
Q ss_pred CeeeecCCCC--CCCcccEEEEEECCe-------EEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCc
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGSQ-------EHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~~-------~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~ 71 (127)
|++|++|+.. .|.+|||++++++.. ..+|++++ ++.+|.||++|.|.+.... ..|.++|||++..++++
T Consensus 6 Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~-~~l~~~v~d~~~~~~~~ 83 (133)
T cd04033 6 VLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIK-KTLNPKWNEEFFFRVNPRE-HRLLFEVFDENRLTRDD 83 (133)
T ss_pred EEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEc-CCCCCcEeeEEEEEEcCCC-CEEEEEEEECCCCCCCC
Confidence 5789999887 678999999999543 57899999 9999999999999986543 58999999999998999
Q ss_pred eeEEEe-cccccccCCCCCccCCCceeeEEEecc-----cccceEEEEeEEE
Q psy7073 72 FLGKTK-RVKGEAINPREPNLLMGSLCSKYVLYK-----FTVAEIIQRKFKL 117 (127)
Q Consensus 72 ~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~G~i~~~~~~l 117 (127)
+||++. ++.++........ .+....|+.|.. ...|+|++ ++.+
T Consensus 84 ~iG~~~i~l~~l~~~~~~~~--~~~~~~~~~l~~~~~~~~~~G~l~~-~~~~ 132 (133)
T cd04033 84 FLGQVEVPLNNLPTETPGNE--RRYTFKDYLLRPRSSKSRVKGHLRL-YMAY 132 (133)
T ss_pred eeEEEEEEHHHCCCcCcccc--ccccchheeeeecCCCCcceeEEEE-EEee
Confidence 999999 9999995322100 123456777663 34699988 6654
No 25
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.84 E-value=1.1e-20 Score=118.09 Aligned_cols=81 Identities=12% Similarity=0.252 Sum_probs=70.5
Q ss_pred CeeeecCCCCCCCcccEEEEEECC----eEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCCCceeE
Q psy7073 1 MSSGYKLKAPTHKRQVFCQVTMGS----QEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSPDEFLG 74 (127)
Q Consensus 1 vi~a~~L~~~~g~sdpyv~i~~g~----~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d~~iG 74 (127)
|++|++|+ ..|.+||||++++.. .+.+|++.+ +++||.|||+|.|.+... ....|.++|||+|.++++++||
T Consensus 20 vikA~~L~-~~g~sDPYVKv~L~~~~k~~k~kT~v~r-ktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG 97 (118)
T cd08677 20 ILEAENIS-VDAGCECYISGCVSVSEGQKEAQTALKK-LALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLG 97 (118)
T ss_pred EEEecCCC-CCCCCCeEEEEEEcCCcCccEEEcceec-CCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEE
Confidence 57899998 666799999999942 577999999 999999999999987643 3457999999999999999999
Q ss_pred EEe-cccccc
Q psy7073 75 KTK-RVKGEA 83 (127)
Q Consensus 75 ~~~-~l~~~~ 83 (127)
++. ++.++-
T Consensus 98 ~v~l~l~~~~ 107 (118)
T cd08677 98 ELRLKLADVS 107 (118)
T ss_pred EEEEcccccc
Confidence 999 999874
No 26
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.84 E-value=3e-20 Score=117.42 Aligned_cols=109 Identities=18% Similarity=0.330 Sum_probs=86.2
Q ss_pred CeeeecCCCC---CCCcccEEEEEECC--eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEE
Q psy7073 1 MSSGYKLKAP---THKRQVFCQVTMGS--QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGK 75 (127)
Q Consensus 1 vi~a~~L~~~---~g~sdpyv~i~~g~--~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 75 (127)
|++|++|+.. .+.+||||++.++. ...+|++++ ++.+|.|||.|.|.+.. ..+.|.++|||++..++|++||+
T Consensus 8 v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~-~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~d~~iG~ 85 (124)
T cd04044 8 IKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKK-DTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRKDKLIGT 85 (124)
T ss_pred EEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeec-CCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCCCceeEE
Confidence 5789999864 46789999999976 789999999 99999999999998874 34689999999999889999999
Q ss_pred Ee-cccccccCCCCCccCCCceeeEEEecccccceEEEEeEEE
Q psy7073 76 TK-RVKGEAINPREPNLLMGSLCSKYVLYKFTVAEIIQRKFKL 117 (127)
Q Consensus 76 ~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~i~~~~~~l 117 (127)
+. ++.++...... ......+....++.|+|++ .+.+
T Consensus 86 ~~~~l~~l~~~~~~-----~~~~~~~~~~~k~~G~i~~-~l~~ 122 (124)
T cd04044 86 AEFDLSSLLQNPEQ-----ENLTKNLLRNGKPVGELNY-DLRF 122 (124)
T ss_pred EEEEHHHhccCccc-----cCcchhhhcCCccceEEEE-EEEe
Confidence 99 99999942211 1122233445677899988 5544
No 27
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.84 E-value=3.5e-20 Score=115.25 Aligned_cols=97 Identities=22% Similarity=0.456 Sum_probs=82.0
Q ss_pred CeeeecCCCC---CCCcccEEEEEECCeEEEeEEEeCCCCCCeE-ccEEEEEEecC--CCCeEEEEEEEcCCCCCCceeE
Q psy7073 1 MSSGYKLKAP---THKRQVFCQVTMGSQEHTTSIISINTLEPKW-NSSMQFLIKDV--QEDVLCITVFDKGHYSPDEFLG 74 (127)
Q Consensus 1 vi~a~~L~~~---~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w-~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d~~iG 74 (127)
|++|++|+++ .|.+||||+++++..+++|++++ ++.||.| ||.|.|.+... ....|.|+|||++.++++++||
T Consensus 5 v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~-~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG 83 (110)
T cd08688 5 VVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVK-KSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIG 83 (110)
T ss_pred EEEEECCCccccCCCCCCceEEEEECCeeEecceec-CCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceE
Confidence 5899999876 46789999999998999999999 9999999 99999988653 2358999999999999999999
Q ss_pred EEe-cccccccCCCCCccCCCceeeEEEec
Q psy7073 75 KTK-RVKGEAINPREPNLLMGSLCSKYVLY 103 (127)
Q Consensus 75 ~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~ 103 (127)
++. ++.++... .. ......||.|.
T Consensus 84 ~~~~~l~~l~~~-~~----~~~~~~w~~l~ 108 (110)
T cd08688 84 KVYIDLNPLLLK-DS----VSQISGWFPIY 108 (110)
T ss_pred EEEEeHHHhccc-CC----ccccCCeEEcc
Confidence 999 99999952 22 33477788764
No 28
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.84 E-value=1.6e-19 Score=114.56 Aligned_cols=108 Identities=13% Similarity=0.222 Sum_probs=87.7
Q ss_pred CeeeecCCCC--CCCcccEEEEEECC---eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEE
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGS---QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGK 75 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~---~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 75 (127)
|++|++|+.. .+.+||||++..+. ...+|++++ ++.+|.|||.|.|.+.......|.|+|||++..+++++||+
T Consensus 7 v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~-~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~ 85 (126)
T cd04043 7 IVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIY-DTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGR 85 (126)
T ss_pred EEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEec-CCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEE
Confidence 5789999887 67899999998853 468999999 99999999999999877545689999999998888999999
Q ss_pred Ee-cccccccCCCCCccCCCceeeEEEecccccceEEEEeEEE
Q psy7073 76 TK-RVKGEAINPREPNLLMGSLCSKYVLYKFTVAEIIQRKFKL 117 (127)
Q Consensus 76 ~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~i~~~~~~l 117 (127)
+. ++.++.... + ......|+.+.. .|+|++ .+.+
T Consensus 86 ~~i~l~~~~~~~-~----~~~~~~w~~l~~--~g~i~l-~~~~ 120 (126)
T cd04043 86 ASLKLDPKRFGD-D----GLPREIWLDLDT--QGRLLL-RVSM 120 (126)
T ss_pred EEEecCHHHcCC-C----CCCceEEEEcCC--CCeEEE-EEEE
Confidence 99 999876322 1 123567887764 799988 6665
No 29
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.84 E-value=8.4e-20 Score=113.71 Aligned_cols=99 Identities=18% Similarity=0.179 Sum_probs=83.8
Q ss_pred CCCcccEEEEEECC-eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-cccccccCCCC
Q psy7073 11 THKRQVFCQVTMGS-QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-RVKGEAINPRE 88 (127)
Q Consensus 11 ~g~sdpyv~i~~g~-~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~~~~~~ 88 (127)
+|.+||||++.+++ ...+|++++ ++.||.|||.|.|.+.+.....|.|.|||++.+ +|++||++. +|+++.. ..
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~-~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~-~~- 85 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKK-KTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLID-AT- 85 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeec-cCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHh-hh-
Confidence 78899999999976 467999999 899999999999998776556899999999998 899999999 9999984 21
Q ss_pred CccCCCceeeEEEecccccceEEEEeEEEEE
Q psy7073 89 PNLLMGSLCSKYVLYKFTVAEIIQRKFKLLR 119 (127)
Q Consensus 89 ~~~~~~~~~~~~~l~~~~~G~i~~~~~~l~~ 119 (127)
+....|+.|.+.+.|+|++ ++.+.+
T Consensus 86 -----~~~~~w~~L~~~~~G~i~~-~~~~~p 110 (111)
T cd04052 86 -----SVGQQWFPLSGNGQGRIRI-SALWKP 110 (111)
T ss_pred -----hccceeEECCCCCCCEEEE-EEEEec
Confidence 1246888888778899999 766654
No 30
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.83 E-value=1.5e-19 Score=113.57 Aligned_cols=104 Identities=29% Similarity=0.417 Sum_probs=85.9
Q ss_pred CeeeecCCCC--CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK- 77 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~- 77 (127)
|++|++|+.. .+.+||||+++++....+|++++ ++.||.|+++|.|.+.... ..+.++|||++..+++++||++.
T Consensus 7 v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~~~~~~~~-~~l~~~v~d~~~~~~~~~iG~~~~ 84 (119)
T cd08377 7 VIRASGLAAADIGGKSDPFCVLELVNARLQTHTIY-KTLNPEWNKIFTFPIKDIH-DVLEVTVYDEDKDKKPEFLGKVAI 84 (119)
T ss_pred EEeeeCCCCCCCCCCCCcEEEEEECCEeeecceec-CCcCCccCcEEEEEecCcC-CEEEEEEEECCCCCCCceeeEEEE
Confidence 5789999877 67899999999988888999999 9999999999999987643 68999999999888999999999
Q ss_pred cccccccCCCCCccCCCceeeEEEec-----ccccceEEEEeEEE
Q psy7073 78 RVKGEAINPREPNLLMGSLCSKYVLY-----KFTVAEIIQRKFKL 117 (127)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~i~~~~~~l 117 (127)
++.++.. . ...|+.+. ....|+|.+ ++.+
T Consensus 85 ~l~~~~~-~---------~~~~~~l~~~~~~~~~~G~i~l-~~~~ 118 (119)
T cd08377 85 PLLSIKN-G---------ERKWYALKDKKLRTRAKGSILL-EMDV 118 (119)
T ss_pred EHHHCCC-C---------CceEEECcccCCCCceeeEEEE-EEEe
Confidence 9998863 1 12466554 235799988 6554
No 31
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.83 E-value=2.9e-20 Score=117.62 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=72.2
Q ss_pred CeeeecCCCC-CCCcccEEEEEEC-----CeEEEeEEEeCCCCCCeEccEEEEEE-e--cCCCCeEEEEEEEcCCCCCCc
Q psy7073 1 MSSGYKLKAP-THKRQVFCQVTMG-----SQEHTTSIISINTLEPKWNSSMQFLI-K--DVQEDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 1 vi~a~~L~~~-~g~sdpyv~i~~g-----~~~~~T~~~~~~~~~P~w~e~~~f~~-~--~~~~~~l~v~v~d~~~~~~d~ 71 (127)
|++|++|+++ .+.+||||++++. ..+.+|++++ ++.||.|||+|.|.+ . ......|.++|||++.+++++
T Consensus 19 Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~-~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~ 97 (122)
T cd08381 19 VMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVR-KTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENE 97 (122)
T ss_pred EEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccC-CCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCc
Confidence 5789999887 7889999999994 3478999999 999999999999986 2 234468999999999999999
Q ss_pred eeEEEe-ccccccc
Q psy7073 72 FLGKTK-RVKGEAI 84 (127)
Q Consensus 72 ~iG~~~-~l~~~~~ 84 (127)
+||++. ++.++..
T Consensus 98 ~lG~~~i~l~~l~~ 111 (122)
T cd08381 98 FLGGVCIPLKKLDL 111 (122)
T ss_pred EEEEEEEecccccc
Confidence 999999 9999883
No 32
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.83 E-value=8.1e-20 Score=112.70 Aligned_cols=95 Identities=20% Similarity=0.323 Sum_probs=81.4
Q ss_pred CeeeecCCCC--CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK- 77 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~- 77 (127)
|++|++|+.. .+.+||||+++++++.++|++++ ++.+|.|||.|.|.+..+..+.|.|+|||++. +++||++.
T Consensus 6 v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~~~i 81 (105)
T cd04050 6 LDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKE-RTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGSLTL 81 (105)
T ss_pred EeeecCCCCcccCCCCCcEEEEEECCEEEeCcccc-CCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEEEEE
Confidence 5789999887 67899999999999999999999 99999999999999988766789999999876 88999999
Q ss_pred cccccccCCCCCccCCCceeeEEEeccc
Q psy7073 78 RVKGEAINPREPNLLMGSLCSKYVLYKF 105 (127)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 105 (127)
++.++.... ......||.|.+.
T Consensus 82 ~l~~l~~~~------~~~~~~w~~L~~~ 103 (105)
T cd04050 82 PLSELLKEP------DLTLDQPFPLDNS 103 (105)
T ss_pred EHHHhhccc------cceeeeeEecCCC
Confidence 999999522 2246778887653
No 33
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.83 E-value=7.6e-19 Score=114.10 Aligned_cols=118 Identities=19% Similarity=0.329 Sum_probs=91.2
Q ss_pred CeeeecCCCC-CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-c
Q psy7073 1 MSSGYKLKAP-THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-R 78 (127)
Q Consensus 1 vi~a~~L~~~-~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~ 78 (127)
|++|.+|... .+.+||||+++++.++.+|++++ ++.||.|||.|.|.+..+ ...|.++|||++.+++|++||++. +
T Consensus 8 Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk-~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~iG~a~i~ 85 (145)
T cd04038 8 VVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIK-KNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDSMGEAEID 85 (145)
T ss_pred EEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEc-CCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCEEEEEEEE
Confidence 5789999766 67889999999999999999999 999999999999999877 468999999999999999999999 9
Q ss_pred ccccccCCCC---CccCCCc-eeeEEEec----------ccccceEEEEeEEEEEec
Q psy7073 79 VKGEAINPRE---PNLLMGS-LCSKYVLY----------KFTVAEIIQRKFKLLRFD 121 (127)
Q Consensus 79 l~~~~~~~~~---~~~~~~~-~~~~~~l~----------~~~~G~i~~~~~~l~~~~ 121 (127)
+.++...... ..++.+. +.+|+... ....|++.. .+.|+.-.
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~l~l~~ 141 (145)
T cd04038 86 LEPLVEAAKLDHLRDTPGGTQIKKVLPSVENCLASESHITWKDGKIVQ-DLVLKLRN 141 (145)
T ss_pred HHHhhhhhhhhccccCCCCEEEEEEecCCCceEeccceEEEECCEEEE-EEEEEecc
Confidence 9998853321 0222343 33333321 112388888 77776544
No 34
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.82 E-value=9.5e-20 Score=118.68 Aligned_cols=95 Identities=18% Similarity=0.265 Sum_probs=77.3
Q ss_pred CeeeecCCCCCCCcccEEEEEECC-----eEEEeEEEeCCCCCCeEccEEEEEEec---------------CCCCeEEEE
Q psy7073 1 MSSGYKLKAPTHKRQVFCQVTMGS-----QEHTTSIISINTLEPKWNSSMQFLIKD---------------VQEDVLCIT 60 (127)
Q Consensus 1 vi~a~~L~~~~g~sdpyv~i~~g~-----~~~~T~~~~~~~~~P~w~e~~~f~~~~---------------~~~~~l~v~ 60 (127)
|++|++|....|.+||||++++.. ...+|++++ ++.||.|||.|.|.+.. .....|.|+
T Consensus 6 Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~-~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~ 84 (148)
T cd04010 6 VIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKK-KTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVD 84 (148)
T ss_pred EEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEe-CCCCCccceEEEEEEecccccccccccCCcccccEEEEEEE
Confidence 588999988778999999999953 567999999 99999999999998851 112469999
Q ss_pred EEEcCCCCCCceeEEEe-cccccccCCCCCccCCCceeeEEEec
Q psy7073 61 VFDKGHYSPDEFLGKTK-RVKGEAINPREPNLLMGSLCSKYVLY 103 (127)
Q Consensus 61 v~d~~~~~~d~~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~ 103 (127)
|||++..++|++||++. ++.++... . +....||.|.
T Consensus 85 V~d~~~~~~ddfLG~v~i~l~~l~~~-~------~~~~~W~~L~ 121 (148)
T cd04010 85 LWHASMGGGDVFLGEVRIPLRGLDLQ-A------GSHQAWYFLQ 121 (148)
T ss_pred EEcCCCCCCCceeEEEEEeccccccc-C------CcCcceeecC
Confidence 99999888999999999 99998842 0 2345677665
No 35
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.82 E-value=2.2e-19 Score=113.70 Aligned_cols=81 Identities=25% Similarity=0.471 Sum_probs=72.1
Q ss_pred CeeeecCCCC--CCCcccEEEEEEC-CeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCC--CceeEE
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMG-SQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSP--DEFLGK 75 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g-~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~--d~~iG~ 75 (127)
|++|++|+.+ .+.+|||++++++ ...++|++++ ++.||.|||.|.|.+.. ...|.++|||++..++ |++||+
T Consensus 6 v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~-~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~lG~ 82 (123)
T cd08382 6 VLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAK-KTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGFLGC 82 (123)
T ss_pred EEEecCCCccCCCCCCCcEEEEEECCccceEccEEc-CCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCceEeE
Confidence 5789999877 7889999999995 7789999999 99999999999999865 4689999999998765 579999
Q ss_pred Ee-ccccccc
Q psy7073 76 TK-RVKGEAI 84 (127)
Q Consensus 76 ~~-~l~~~~~ 84 (127)
+. ++.++..
T Consensus 83 ~~i~l~~l~~ 92 (123)
T cd08382 83 VRIRANAVLP 92 (123)
T ss_pred EEEEHHHccc
Confidence 99 9999984
No 36
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.82 E-value=1.9e-19 Score=114.44 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=82.9
Q ss_pred CeeeecCCCC--CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK- 77 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~- 77 (127)
|++|++|... .|.+||||++.++.+..+|++++ ++.+|.|||.|.|.+... ...|.|+|||++.. +|++||++.
T Consensus 9 v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~-~d~~lG~~~~ 85 (126)
T cd04046 9 VHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQK-DTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL-CDEFLGQATL 85 (126)
T ss_pred EEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccC-CCCCCcccceEEEEecCC-CCEEEEEEEECCCC-CCCceEEEEE
Confidence 5789999876 78899999999998899999999 999999999999987765 46899999999887 589999999
Q ss_pred cccccccCCCCCccCCCceeeEEEe-------cccccceEEEEeEEE
Q psy7073 78 RVKGEAINPREPNLLMGSLCSKYVL-------YKFTVAEIIQRKFKL 117 (127)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~G~i~~~~~~l 117 (127)
++.++.. .. ..++.| ++...|+|.+ ++.+
T Consensus 86 ~l~~~~~--~~--------~~~~~l~~~~~~~~~~~~G~i~~-~~~~ 121 (126)
T cd04046 86 SADPNDS--QT--------LRTLPLRKRGRDAAGEVPGTISV-KVTS 121 (126)
T ss_pred ecccCCC--cC--------ceEEEcccCCCCCCCCCCCEEEE-EEEE
Confidence 9987542 11 122333 2555699988 6654
No 37
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.82 E-value=3.2e-19 Score=111.02 Aligned_cols=96 Identities=20% Similarity=0.238 Sum_probs=80.6
Q ss_pred CeeeecCCCCCCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCC----CCeEEEEEEEcCCCCCCceeEEE
Q psy7073 1 MSSGYKLKAPTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQ----EDVLCITVFDKGHYSPDEFLGKT 76 (127)
Q Consensus 1 vi~a~~L~~~~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~----~~~l~v~v~d~~~~~~d~~iG~~ 76 (127)
|++|++|+ .|.+||||++++++++.+|++++ ++.+|.|||.|.|.+..+. ...|.++|||++.+++|++||++
T Consensus 10 v~~a~~L~--~~~~dpyv~v~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~ 86 (111)
T cd04011 10 VIEARQLV--GGNIDPVVKVEVGGQKKYTSVKK-GTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSF 86 (111)
T ss_pred EEEcccCC--CCCCCCEEEEEECCEeeeeeEEe-ccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEE
Confidence 57899998 67899999999999899999999 9999999999999875442 35799999999998889999999
Q ss_pred e-cccccccCCCCCccCCCceeeEEEecc
Q psy7073 77 K-RVKGEAINPREPNLLMGSLCSKYVLYK 104 (127)
Q Consensus 77 ~-~l~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (127)
. ++.++.. ... .+.+.+|+.|.+
T Consensus 87 ~i~l~~v~~-~~~----~~~~~~w~~L~~ 110 (111)
T cd04011 87 KLDVGTVYD-QPD----HAFLRKWLLLTD 110 (111)
T ss_pred EECCccccC-CCC----CcceEEEEEeeC
Confidence 9 9999984 322 345677887653
No 38
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.82 E-value=2e-19 Score=116.72 Aligned_cols=94 Identities=18% Similarity=0.313 Sum_probs=78.1
Q ss_pred CeeeecCCCC---CCCcccEEEEEE--CC---eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEE-EcCCCCCCc
Q psy7073 1 MSSGYKLKAP---THKRQVFCQVTM--GS---QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVF-DKGHYSPDE 71 (127)
Q Consensus 1 vi~a~~L~~~---~g~sdpyv~i~~--g~---~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~-d~~~~~~d~ 71 (127)
|++|+||.+. .|.+||||++++ +. .+.+|++++ +++||.|||+|.|.+. ..+..|.++|| |++.+++++
T Consensus 35 Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~k-ktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~~~~~~~ 112 (146)
T cd04028 35 VIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIAR-KTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYGRMDKKV 112 (146)
T ss_pred EEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecC-CCCCCccCCeEEEEEc-CCCCEEEEEEEeCCCCCCCCc
Confidence 5789999875 578999999999 32 378999999 9999999999999988 45578999999 678888899
Q ss_pred eeEEEe-cccccccCCCCCccCCCceeeEEEecc
Q psy7073 72 FLGKTK-RVKGEAINPREPNLLMGSLCSKYVLYK 104 (127)
Q Consensus 72 ~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (127)
+||++. +|.++-. ......|+.|.+
T Consensus 113 ~iG~~~i~L~~l~~--------~~~~~~Wy~L~~ 138 (146)
T cd04028 113 FMGVAQILLDDLDL--------SNLVIGWYKLFP 138 (146)
T ss_pred eEEEEEEEcccccC--------CCCceeEEecCC
Confidence 999999 9998752 223577887764
No 39
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.82 E-value=2.7e-19 Score=116.87 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=85.7
Q ss_pred CeeeecCCCC--C--------------CCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecC-CCCeEEEEEEE
Q psy7073 1 MSSGYKLKAP--T--------------HKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDV-QEDVLCITVFD 63 (127)
Q Consensus 1 vi~a~~L~~~--~--------------g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~-~~~~l~v~v~d 63 (127)
|++|++|+.+ . +.+||||++.++..+.+|++++ ++.||.|||.|.|.+..+ ..+.|.++|||
T Consensus 6 V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~-~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D 84 (151)
T cd04018 6 IYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKK-NSYNPEWNEQIVFPEMFPPLCERIKIQIRD 84 (151)
T ss_pred EEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEc-CCCCCCcceEEEEEeeCCCcCCEEEEEEEE
Confidence 5789999887 2 3689999999998889999999 999999999999987543 34589999999
Q ss_pred cCCCCCCceeEEEe-cccccccCCCCCccCCCc--eeeEEEecccccceEEE
Q psy7073 64 KGHYSPDEFLGKTK-RVKGEAINPREPNLLMGS--LCSKYVLYKFTVAEIIQ 112 (127)
Q Consensus 64 ~~~~~~d~~iG~~~-~l~~~~~~~~~~~~~~~~--~~~~~~l~~~~~G~i~~ 112 (127)
++..++|++||++. ++.++.....+ . ..| -..|+.+.+.+.+...+
T Consensus 85 ~d~~~~dd~iG~~~l~l~~l~~~~~~-~--~lp~~~p~W~~lyg~~~~~~~~ 133 (151)
T cd04018 85 WDRVGNDDVIGTHFIDLSKISNSGDE-G--FLPTFGPSFVNLYGSPREYSLL 133 (151)
T ss_pred CCCCCCCCEEEEEEEeHHHhccCCcc-c--cCCccCceEEEeecCccccccc
Confidence 99999999999999 99999853322 1 112 24778887776655443
No 40
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.82 E-value=7.1e-19 Score=112.57 Aligned_cols=106 Identities=19% Similarity=0.242 Sum_probs=86.7
Q ss_pred CeeeecCCCC-C-----------CCcccEEEEEECCe-EEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCC
Q psy7073 1 MSSGYKLKAP-T-----------HKRQVFCQVTMGSQ-EHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHY 67 (127)
Q Consensus 1 vi~a~~L~~~-~-----------g~sdpyv~i~~g~~-~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~ 67 (127)
|++|++|++. . +.+||||++.++.. ..+|++++ ++.+|.|||.|.|.+.. ...|.|.|||++.+
T Consensus 10 v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~-~t~~P~Wne~f~~~v~~--~~~l~~~v~d~~~~ 86 (132)
T cd04014 10 ICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKP-KTNSPVWNEEFTTEVHN--GRNLELTVFHDAAI 86 (132)
T ss_pred EEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcC-CCCCCCcceeEEEEcCC--CCEEEEEEEeCCCC
Confidence 5788999766 2 57899999999764 46999999 89999999999999863 46899999999988
Q ss_pred CCCceeEEEe-cccccccCCCCCccCCCceeeEEEecccccceEEEEeEEEE
Q psy7073 68 SPDEFLGKTK-RVKGEAINPREPNLLMGSLCSKYVLYKFTVAEIIQRKFKLL 118 (127)
Q Consensus 68 ~~d~~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~i~~~~~~l~ 118 (127)
+++++||++. +|.++.... ......|+.|. +.|+|++ .+.+.
T Consensus 87 ~~~~~iG~~~i~l~~l~~~~------~~~~~~w~~L~--~~G~l~l-~~~~~ 129 (132)
T cd04014 87 GPDDFVANCTISFEDLIQRG------SGSFDLWVDLE--PQGKLHV-KIELK 129 (132)
T ss_pred CCCceEEEEEEEhHHhcccC------CCcccEEEEcc--CCcEEEE-EEEEe
Confidence 8899999999 999998521 22357788776 6799999 66653
No 41
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.81 E-value=3.3e-19 Score=113.27 Aligned_cols=93 Identities=16% Similarity=0.271 Sum_probs=76.4
Q ss_pred CeeeecCCCC---CCCcccEEEEEEC-----CeEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCCC
Q psy7073 1 MSSGYKLKAP---THKRQVFCQVTMG-----SQEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSPD 70 (127)
Q Consensus 1 vi~a~~L~~~---~g~sdpyv~i~~g-----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d 70 (127)
|++|+||.+. .|.+||||++++. ..+.+|++++ ++.||.|||+|.|.+... ....|.++|||++.++++
T Consensus 21 Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~ 99 (125)
T cd04029 21 VKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR-NTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRN 99 (125)
T ss_pred EEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeee-CCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCC
Confidence 5789999876 4789999999983 2467999999 999999999999987642 345799999999999999
Q ss_pred ceeEEEe-cccccccCCCCCccCCCceeeEEEe
Q psy7073 71 EFLGKTK-RVKGEAINPREPNLLMGSLCSKYVL 102 (127)
Q Consensus 71 ~~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l 102 (127)
++||++. ++.++.. ......|+.|
T Consensus 100 ~~lG~~~i~l~~~~~--------~~~~~~w~~l 124 (125)
T cd04029 100 TFLGEVEIPLDSWNF--------DSQHEECLPL 124 (125)
T ss_pred cEEEEEEEeCCcccc--------cCCcccEEEC
Confidence 9999999 9998874 2235666655
No 42
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.81 E-value=2.6e-19 Score=111.50 Aligned_cols=83 Identities=17% Similarity=0.328 Sum_probs=72.5
Q ss_pred CeeeecCCCC--C-CCcccEEEEEEC---CeEEEeEEEeCCCCCCeEccEEEEEEecC---CCCeEEEEEEEcCCCCCCc
Q psy7073 1 MSSGYKLKAP--T-HKRQVFCQVTMG---SQEHTTSIISINTLEPKWNSSMQFLIKDV---QEDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 1 vi~a~~L~~~--~-g~sdpyv~i~~g---~~~~~T~~~~~~~~~P~w~e~~~f~~~~~---~~~~l~v~v~d~~~~~~d~ 71 (127)
|++|++|+.. . +.+||||++++. +...+|++++ ++.||.|||.|.|.+... ....|.++|||++.+++|+
T Consensus 7 v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd 85 (111)
T cd04041 7 IHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIR-KDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADD 85 (111)
T ss_pred EEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeEC-CCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCC
Confidence 5789999877 5 889999999983 4568999999 999999999999987654 2358999999999999999
Q ss_pred eeEEEe-ccccccc
Q psy7073 72 FLGKTK-RVKGEAI 84 (127)
Q Consensus 72 ~iG~~~-~l~~~~~ 84 (127)
+||++. ++.++.+
T Consensus 86 ~lG~~~i~l~~l~~ 99 (111)
T cd04041 86 RLGRVEIDLKELIE 99 (111)
T ss_pred cceEEEEEHHHHhc
Confidence 999999 9999994
No 43
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.80 E-value=7.2e-19 Score=111.07 Aligned_cols=80 Identities=19% Similarity=0.282 Sum_probs=69.8
Q ss_pred CeeeecCCCCCCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-cc
Q psy7073 1 MSSGYKLKAPTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-RV 79 (127)
Q Consensus 1 vi~a~~L~~~~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l 79 (127)
|++|++|.+.. ..||||++.+|+++.+|++++ + .||.|||.|.|.+.... ..|.|+|||++.+ +||+||++. +|
T Consensus 8 Vv~Ar~L~~~~-~~dPYV~Ik~g~~k~kT~v~~-~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~-~DD~lG~v~i~L 82 (127)
T cd08394 8 VKKAKLDGAPD-KFNTYVTLKVQNVKSTTIAVR-G-SQPCWEQDFMFEINRLD-LGLVIELWNKGLI-WDTLVGTVWIPL 82 (127)
T ss_pred EEEeeCCCCCC-CCCCeEEEEECCEEeEeeECC-C-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCc-CCCceEEEEEEh
Confidence 57899997654 458999999999999999998 6 49999999999998765 4699999999865 899999999 99
Q ss_pred cccccC
Q psy7073 80 KGEAIN 85 (127)
Q Consensus 80 ~~~~~~ 85 (127)
.++...
T Consensus 83 ~~v~~~ 88 (127)
T cd08394 83 STIRQS 88 (127)
T ss_pred HHcccC
Confidence 999953
No 44
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.80 E-value=3.7e-19 Score=113.02 Aligned_cols=83 Identities=17% Similarity=0.353 Sum_probs=71.5
Q ss_pred CeeeecCCCC--C-CCcccEEEEEEC-----CeEEEeEEEeCCCCCCeEccEEEEEEec--CCCCeEEEEEEEcCCCCCC
Q psy7073 1 MSSGYKLKAP--T-HKRQVFCQVTMG-----SQEHTTSIISINTLEPKWNSSMQFLIKD--VQEDVLCITVFDKGHYSPD 70 (127)
Q Consensus 1 vi~a~~L~~~--~-g~sdpyv~i~~g-----~~~~~T~~~~~~~~~P~w~e~~~f~~~~--~~~~~l~v~v~d~~~~~~d 70 (127)
|++|+||+++ . |.+||||++++. ..+++|++++ ++.||.|||.|.|.+.. .....|.++|||++.++++
T Consensus 21 vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~-~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~ 99 (125)
T cd08393 21 VIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKK-KTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRN 99 (125)
T ss_pred EEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCc-CCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCC
Confidence 5789999988 3 689999999993 2457999999 99999999999998753 2345899999999999999
Q ss_pred ceeEEEe-ccccccc
Q psy7073 71 EFLGKTK-RVKGEAI 84 (127)
Q Consensus 71 ~~iG~~~-~l~~~~~ 84 (127)
++||++. +|.++-.
T Consensus 100 ~~iG~~~i~L~~~~~ 114 (125)
T cd08393 100 SFLGEVEVDLGSWDW 114 (125)
T ss_pred cEeEEEEEecCcccc
Confidence 9999999 9999863
No 45
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.80 E-value=6.5e-19 Score=111.65 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=85.0
Q ss_pred CeeeecCCCC--CCCcccEEEEEECC-eEEEeEEEeCCCCCCeEccEEEEEEecCC----CCeEEEEEEEcCCCCCCcee
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGS-QEHTTSIISINTLEPKWNSSMQFLIKDVQ----EDVLCITVFDKGHYSPDEFL 73 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~-~~~~T~~~~~~~~~P~w~e~~~f~~~~~~----~~~l~v~v~d~~~~~~d~~i 73 (127)
|++|++|+.. .+.+||||+++++. .+.+|+++..++.+|.||+.|.|.+.... ...|.++|||++.+++|++|
T Consensus 6 V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~l 85 (125)
T cd04051 6 IISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLI 85 (125)
T ss_pred EEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcE
Confidence 5789999877 68899999999977 78899987525899999999999987762 46899999999988889999
Q ss_pred EEEe-cccccccCCCCCccCCCceeeEEEec---ccccceEEE
Q psy7073 74 GKTK-RVKGEAINPREPNLLMGSLCSKYVLY---KFTVAEIIQ 112 (127)
Q Consensus 74 G~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~---~~~~G~i~~ 112 (127)
|++. ++.++...... . ......|+.+. +.+.|.|++
T Consensus 86 G~~~i~l~~l~~~~~~-~--~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 86 GEVRVPLKDLLDGASP-A--GELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred EEEEEEHHHhhcccCC-C--CcceeEEEEeECCCCCcCeEEeC
Confidence 9999 99999953321 1 11234566655 445577753
No 46
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.79 E-value=6.4e-19 Score=112.05 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=71.4
Q ss_pred CeeeecCCCC-CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEec-CCCCeEEEEEEEcCCCCCCceeEEEe-
Q psy7073 1 MSSGYKLKAP-THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKD-VQEDVLCITVFDKGHYSPDEFLGKTK- 77 (127)
Q Consensus 1 vi~a~~L~~~-~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~-~~~~~l~v~v~d~~~~~~d~~iG~~~- 77 (127)
|++|++|+.. .+.+|||++++++..+++|++++ ++.||.|||+|.|.... .....|.|+|||++.+++|++||++.
T Consensus 34 V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~-~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i 112 (127)
T cd04032 34 VLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIW-NNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSV 112 (127)
T ss_pred EEECCCCCcCcCCCCCeEEEEEECCccccCceec-CCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEE
Confidence 5789999744 67889999999988899999999 99999999999997433 34468999999999999999999999
Q ss_pred cccccc
Q psy7073 78 RVKGEA 83 (127)
Q Consensus 78 ~l~~~~ 83 (127)
++....
T Consensus 113 ~l~~~~ 118 (127)
T cd04032 113 VPEAGV 118 (127)
T ss_pred EecCCc
Confidence 999666
No 47
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.79 E-value=1.3e-18 Score=110.71 Aligned_cols=100 Identities=24% Similarity=0.358 Sum_probs=80.9
Q ss_pred CeeeecCCCC--CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCC-----------
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHY----------- 67 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~----------- 67 (127)
|++|++|+.. .|.+|||++++++....+|++++ ++.+|.|||.|.|.+..+ ...|.|+|||++..
T Consensus 7 vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~-~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~~~~~ 84 (127)
T cd04027 7 VVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIP-QNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQKFTR 84 (127)
T ss_pred EEECcCCcCCCCCCCcCcEEEEEECCEeeecceec-CCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccceeccc
Confidence 5789999877 67899999999988889999999 999999999999988655 35899999999852
Q ss_pred CCCceeEEEe-cccccccCCCCCccCCCceeeEEEec-----ccccceEEE
Q psy7073 68 SPDEFLGKTK-RVKGEAINPREPNLLMGSLCSKYVLY-----KFTVAEIIQ 112 (127)
Q Consensus 68 ~~d~~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~i~~ 112 (127)
+.+++||++. ++.++.. . ...|+.|. ...+|+|.+
T Consensus 85 ~~~~~iG~~~i~l~~~~~-~---------~~~w~~L~~~~~~~~~~G~i~~ 125 (127)
T cd04027 85 ESDDFLGQTIIEVRTLSG-E---------MDVWYNLEKRTDKSAVSGAIRL 125 (127)
T ss_pred cCCCcceEEEEEhHHccC-C---------CCeEEECccCCCCCcEeEEEEE
Confidence 4689999999 9988652 1 23566555 234688887
No 48
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.79 E-value=4.6e-18 Score=111.99 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=75.2
Q ss_pred CCcccEEEEEECC-eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-cccccccCCCCC
Q psy7073 12 HKRQVFCQVTMGS-QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-RVKGEAINPREP 89 (127)
Q Consensus 12 g~sdpyv~i~~g~-~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~~~~~~~ 89 (127)
|.+||||+++++. ...+|++++ ++.||.|||.|.|.+.... ..|.++|||++.++ +++||++. +++++..
T Consensus 56 g~sDPYv~V~l~~~~~~rT~v~~-~~~nP~WnE~F~~~~~~~~-~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~----- 127 (158)
T cd04015 56 ITSDPYATVDLAGARVARTRVIE-NSENPVWNESFHIYCAHYA-SHVEFTVKDNDVVG-AQLIGRAYIPVEDLLS----- 127 (158)
T ss_pred CCcCeEEEEEECCeEeeEEEEeC-CCCCCccceEEEEEccCCC-CEEEEEEEeCCCcC-CcEEEEEEEEhHHccC-----
Confidence 5689999999986 457999999 8999999999999886654 58999999999875 68999999 9999884
Q ss_pred ccCCCceeeEEEeccc------ccceEEEEeEEEEE
Q psy7073 90 NLLMGSLCSKYVLYKF------TVAEIIQRKFKLLR 119 (127)
Q Consensus 90 ~~~~~~~~~~~~l~~~------~~G~i~~~~~~l~~ 119 (127)
......|+.+.+. ..|+|++ .++|
T Consensus 128 ---g~~~~~w~~L~~~~~~~~~~~~~l~v---~~~f 157 (158)
T cd04015 128 ---GEPVEGWLPILDSNGKPPKPGAKIRV---SLQF 157 (158)
T ss_pred ---CCCcceEEECcCCCCCCCCCCCEEEE---EEEE
Confidence 2346788887532 2367777 5554
No 49
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.79 E-value=3.1e-18 Score=108.04 Aligned_cols=99 Identities=22% Similarity=0.308 Sum_probs=82.9
Q ss_pred CeeeecCCCC--CCCcccEEEEEECC-eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGS-QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK 77 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~-~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~ 77 (127)
|++|++|++. .+.+|||+++.++. ...+|++++ ++.+|.||+.|.|.+.... +.|.|+|||++..++|++||++.
T Consensus 7 Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~-~t~~P~Wne~f~~~v~~~~-~~L~v~v~d~~~~~~d~~IG~~~ 84 (120)
T cd04045 7 IRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTIS-NTLNPVWDEVLYVPVTSPN-QKITLEVMDYEKVGKDRSLGSVE 84 (120)
T ss_pred EEeeECCCCccCCCCcCCEEEEEECCEEeeceeEEC-CCcCCccCceEEEEecCCC-CEEEEEEEECCCCCCCCeeeEEE
Confidence 5789999887 68999999999965 578999999 9999999999999887654 68999999999999999999999
Q ss_pred -cccccccCCCCCccCCCceeeEEEecccccceE
Q psy7073 78 -RVKGEAINPREPNLLMGSLCSKYVLYKFTVAEI 110 (127)
Q Consensus 78 -~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~i 110 (127)
++.++... +...||.+.+...+.+
T Consensus 85 ~~l~~l~~~---------~~~~~~~~~~~~~~~~ 109 (120)
T cd04045 85 INVSDLIKK---------NEDGKYVEYDDEEERL 109 (120)
T ss_pred EeHHHhhCC---------CCCceEEecCCCccee
Confidence 99999942 3466777765555554
No 50
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.79 E-value=1.1e-18 Score=110.57 Aligned_cols=94 Identities=18% Similarity=0.312 Sum_probs=78.1
Q ss_pred CeeeecCCCC--CCCcccEEEEEEC---CeEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCCCcee
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMG---SQEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSPDEFL 73 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g---~~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d~~i 73 (127)
|++|++|.+. .|.+||||+++++ ....+|++++ ++.+|.|||.|.|.+... ....|.++|||++.++++++|
T Consensus 22 v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~i 100 (124)
T cd08387 22 LIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHK-KTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECI 100 (124)
T ss_pred EEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEc-CCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCcee
Confidence 5789999877 7789999999983 4578999999 999999999999987643 245899999999999899999
Q ss_pred EEEe-cccccccCCCCCccCCCceeeEEEec
Q psy7073 74 GKTK-RVKGEAINPREPNLLMGSLCSKYVLY 103 (127)
Q Consensus 74 G~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~ 103 (127)
|++. +++++.. .+....|+.|.
T Consensus 101 G~~~i~l~~~~~--------~~~~~~W~~l~ 123 (124)
T cd08387 101 GVVELPLAEVDL--------SEKLDLWRKIQ 123 (124)
T ss_pred EEEEEecccccC--------CCCcceEEECc
Confidence 9999 9999984 22456677653
No 51
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.79 E-value=1.3e-18 Score=112.17 Aligned_cols=97 Identities=20% Similarity=0.305 Sum_probs=82.5
Q ss_pred CeeeecCCCC-CCCcccEEEEEEC----CeEEEeEEEeCCCCCCeEccEEEEEEecC---------------CCCeEEEE
Q psy7073 1 MSSGYKLKAP-THKRQVFCQVTMG----SQEHTTSIISINTLEPKWNSSMQFLIKDV---------------QEDVLCIT 60 (127)
Q Consensus 1 vi~a~~L~~~-~g~sdpyv~i~~g----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~---------------~~~~l~v~ 60 (127)
|++|++|+.+ .|.+|||++++++ ...++|++++ ++.+|.||+.|.|.+... ....|.|+
T Consensus 5 Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~-~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 83 (137)
T cd08675 5 VLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKK-KTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVE 83 (137)
T ss_pred EEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceee-CCCCCCcceEEEEEccccccccccccccccccccccEEEEE
Confidence 5889999888 7889999999997 6789999999 999999999999987664 34579999
Q ss_pred EEEcCCCCCCceeEEEe-cccccccCCCCCccCCCceeeEEEecccc
Q psy7073 61 VFDKGHYSPDEFLGKTK-RVKGEAINPREPNLLMGSLCSKYVLYKFT 106 (127)
Q Consensus 61 v~d~~~~~~d~~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (127)
|||++..+++++||++. ++.++.. .++...|+.|....
T Consensus 84 V~d~~~~~~~~~IG~~~i~l~~l~~--------~~~~~~W~~L~~~~ 122 (137)
T cd08675 84 LWHASMVSGDDFLGEVRIPLQGLQQ--------AGSHQAWYFLQPRE 122 (137)
T ss_pred EEcCCcCcCCcEEEEEEEehhhccC--------CCcccceEecCCcC
Confidence 99999888899999999 9999883 34467788777443
No 52
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.79 E-value=1.3e-18 Score=110.95 Aligned_cols=96 Identities=15% Similarity=0.267 Sum_probs=77.0
Q ss_pred CeeeecCCCC--C-CCcccEEEEEEC-----CeEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCCC
Q psy7073 1 MSSGYKLKAP--T-HKRQVFCQVTMG-----SQEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSPD 70 (127)
Q Consensus 1 vi~a~~L~~~--~-g~sdpyv~i~~g-----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d 70 (127)
|++|+||+++ . |.+||||++++. ..+++|++++ ++.||.|||+|.|.+... ....|.++|||++.++++
T Consensus 21 V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~-~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~ 99 (128)
T cd08392 21 IKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK-GTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRR 99 (128)
T ss_pred EEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeeccccc-CCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCc
Confidence 5789999887 3 789999999983 2467999999 999999999999987543 345899999999999999
Q ss_pred ceeEEEe-cccccccCCCCCccCCCceeeEEEe
Q psy7073 71 EFLGKTK-RVKGEAINPREPNLLMGSLCSKYVL 102 (127)
Q Consensus 71 ~~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l 102 (127)
++||++. +|.++.-.+.+ .....||.|
T Consensus 100 ~~lG~~~i~L~~~~~~~~~-----~~~~~W~~l 127 (128)
T cd08392 100 VFLGEVLIPLADWDFEDTD-----SQRFLWYPL 127 (128)
T ss_pred ceEEEEEEEcCCcccCCCC-----ccccceEEC
Confidence 9999999 99998632211 134566655
No 53
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.78 E-value=2.9e-18 Score=108.73 Aligned_cols=82 Identities=18% Similarity=0.351 Sum_probs=72.7
Q ss_pred CeeeecCCCC--CCCcccEEEEEECCeE--EEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEE
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGSQE--HTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKT 76 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~~~--~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~ 76 (127)
|++|++|..+ .|.+||||+++++... .+|++++ ++.+|.|||.|.|.+..+....|.++|||++.+++|++||++
T Consensus 6 Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~-~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~ 84 (124)
T cd04037 6 VVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIP-NTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGET 84 (124)
T ss_pred EEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEE-CCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEE
Confidence 5789999887 6899999999997654 5788899 899999999999988766566899999999999899999999
Q ss_pred e-cccccc
Q psy7073 77 K-RVKGEA 83 (127)
Q Consensus 77 ~-~l~~~~ 83 (127)
. ++.+..
T Consensus 85 ~i~l~~~~ 92 (124)
T cd04037 85 VIDLEDRF 92 (124)
T ss_pred EEeecccc
Confidence 9 999777
No 54
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.78 E-value=5.9e-18 Score=105.70 Aligned_cols=95 Identities=21% Similarity=0.272 Sum_probs=79.7
Q ss_pred CeeeecCCCC--CCCcccEEEEEEC-CeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMG-SQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK 77 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g-~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~ 77 (127)
|++|++|... .+.+||||++.++ ...++|+++. ++.+|.||++|.|.+.......+.++|||++..+++++||++.
T Consensus 5 vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~-~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~ 83 (115)
T cd04040 5 VISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIK-KTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAY 83 (115)
T ss_pred EEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceec-CCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEE
Confidence 5789999877 6788999999995 4568999999 9999999999999987654568999999999888999999999
Q ss_pred -cccccccCCCCCccCCCceeeEEEecc
Q psy7073 78 -RVKGEAINPREPNLLMGSLCSKYVLYK 104 (127)
Q Consensus 78 -~l~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (127)
++.++.. ......++.+..
T Consensus 84 ~~l~~l~~--------~~~~~~~~~L~~ 103 (115)
T cd04040 84 IDLSDLEP--------EETTELTLPLDG 103 (115)
T ss_pred EEHHHcCC--------CCcEEEEEECcC
Confidence 9999884 223566776663
No 55
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.78 E-value=7.7e-18 Score=110.20 Aligned_cols=107 Identities=21% Similarity=0.290 Sum_probs=81.5
Q ss_pred eeeec--CCCC--CCCcccEEEEEE-----CCeEEEeEEEeCCCCCCeEccEEEEEEecCC--------CCeEEEEEEEc
Q psy7073 2 SSGYK--LKAP--THKRQVFCQVTM-----GSQEHTTSIISINTLEPKWNSSMQFLIKDVQ--------EDVLCITVFDK 64 (127)
Q Consensus 2 i~a~~--L~~~--~g~sdpyv~i~~-----g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~--------~~~l~v~v~d~ 64 (127)
+.|.+ |++. .+.+||||++++ +.++.+|++++ ++.||.|||+|.|.+.... ...|.++|||+
T Consensus 9 ~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k-~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~ 87 (155)
T cd08690 9 VRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIK-DTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHK 87 (155)
T ss_pred EEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCccc-CCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeC
Confidence 45666 4444 567899999987 24689999999 9999999999999885431 34699999999
Q ss_pred CCC-CCCceeEEEe-cccccccCCCCCccCCCceeeEEEec---ccccceEEEEeEEEE
Q psy7073 65 GHY-SPDEFLGKTK-RVKGEAINPREPNLLMGSLCSKYVLY---KFTVAEIIQRKFKLL 118 (127)
Q Consensus 65 ~~~-~~d~~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~---~~~~G~i~~~~~~l~ 118 (127)
+.+ .+|++||++. +|+.+.. ......++.+. ....|+|++ ++.++
T Consensus 88 ~~f~~~D~~iG~~~i~L~~l~~--------~~~~~~~~~L~~~~k~~Gg~l~v-~ir~r 137 (155)
T cd08690 88 GGFLRSDKLLGTAQVKLEPLET--------KCEIHESVDLMDGRKATGGKLEV-KVRLR 137 (155)
T ss_pred CCcccCCCeeEEEEEEcccccc--------cCcceEEEEhhhCCCCcCCEEEE-EEEec
Confidence 986 4799999999 9999874 11244566554 223499999 87765
No 56
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.78 E-value=8.7e-18 Score=108.16 Aligned_cols=106 Identities=27% Similarity=0.342 Sum_probs=80.8
Q ss_pred CeeeecCCCC-CCCcccEEEEEEC--C-----------eEEEeEEEeCCCCCCeE-ccEEEEEEecCCCCeEEEEEEEcC
Q psy7073 1 MSSGYKLKAP-THKRQVFCQVTMG--S-----------QEHTTSIISINTLEPKW-NSSMQFLIKDVQEDVLCITVFDKG 65 (127)
Q Consensus 1 vi~a~~L~~~-~g~sdpyv~i~~g--~-----------~~~~T~~~~~~~~~P~w-~e~~~f~~~~~~~~~l~v~v~d~~ 65 (127)
+++|++|+.. .|.+|||+++++. . +.++|++++ ++.||.| ||.|.|.+.. ++.|.++|||++
T Consensus 7 ~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~-~tlnP~W~nE~f~f~v~~--~~~L~v~V~D~~ 83 (137)
T cd08691 7 GLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVE-NTINPVWHREQFVFVGLP--TDVLEIEVKDKF 83 (137)
T ss_pred EEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEc-CCCCCceEceEEEEEcCC--CCEEEEEEEecC
Confidence 4789999743 7999999999983 2 368999999 9999999 9999998854 358999999986
Q ss_pred CCCC---CceeEEEe-cccccccCCCCCccCCCceeeEEEec-----ccccceEEEEeE
Q psy7073 66 HYSP---DEFLGKTK-RVKGEAINPREPNLLMGSLCSKYVLY-----KFTVAEIIQRKF 115 (127)
Q Consensus 66 ~~~~---d~~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~i~~~~~ 115 (127)
..++ +++||++. ++.+++..+. .+....++.+. +..+|+|.+ ++
T Consensus 84 ~~~~~~~~d~lG~~~i~l~~l~~~~~-----~~~~~~~~~l~k~~~~s~v~G~~~l-~~ 136 (137)
T cd08691 84 AKSRPIIRRFLGKLSIPVQRLLERHA-----IGDQELSYTLGRRTPTDHVSGQLTF-RF 136 (137)
T ss_pred CCCCccCCceEEEEEEEHHHhccccc-----CCceEEEEECCcCCCCCcEEEEEEE-Ee
Confidence 5433 79999999 9999985322 22345555544 334588877 54
No 57
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.78 E-value=1.6e-18 Score=109.31 Aligned_cols=82 Identities=21% Similarity=0.231 Sum_probs=71.3
Q ss_pred eeeecCCCC--CCCcccEEEEEECCe-------EEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCC----CC
Q psy7073 2 SSGYKLKAP--THKRQVFCQVTMGSQ-------EHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGH----YS 68 (127)
Q Consensus 2 i~a~~L~~~--~g~sdpyv~i~~g~~-------~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~----~~ 68 (127)
++|++|.+. .|.+|||+++++... .++|++++ ++.||.||+.|.|.+.......|.++|||++. .+
T Consensus 7 i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~-~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 7 ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIK-NNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeC-CCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 689999877 788999999999542 48999999 99999999999997654444689999999997 78
Q ss_pred CCceeEEEe-ccccccc
Q psy7073 69 PDEFLGKTK-RVKGEAI 84 (127)
Q Consensus 69 ~d~~iG~~~-~l~~~~~ 84 (127)
++++||++. ++.++..
T Consensus 86 ~~d~iG~~~i~l~~l~~ 102 (120)
T cd04048 86 DHDFLGEAECTLGEIVS 102 (120)
T ss_pred CCcEEEEEEEEHHHHhc
Confidence 999999999 9999995
No 58
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.78 E-value=9.7e-18 Score=106.47 Aligned_cols=108 Identities=19% Similarity=0.304 Sum_probs=81.8
Q ss_pred CeeeecCCCC-CCCcccEEEEEECCe-EEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-
Q psy7073 1 MSSGYKLKAP-THKRQVFCQVTMGSQ-EHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK- 77 (127)
Q Consensus 1 vi~a~~L~~~-~g~sdpyv~i~~g~~-~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~- 77 (127)
|++|..+... .+.+||||+++++.. ..+|++++ ++.+|.||+.|.|.+.. ...|.|+|||++..+.|++||++.
T Consensus 8 i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~-~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~iG~~~i 84 (125)
T cd04021 8 VESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSK-KTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLLGEASL 84 (125)
T ss_pred EEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeC-CCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEEEEEEE
Confidence 3566633333 678999999999766 89999999 99999999999999764 368999999999998999999999
Q ss_pred cccccccCCCCCccCCCceeeEEEec--c----cccceEEEEeE
Q psy7073 78 RVKGEAINPREPNLLMGSLCSKYVLY--K----FTVAEIIQRKF 115 (127)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~l~--~----~~~G~i~~~~~ 115 (127)
++.++...+.. . ..-...++.+. + ...|+|.+ .+
T Consensus 85 ~l~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~G~~~~-~~ 124 (125)
T cd04021 85 DLSDILKNHNG-K--LENVKLTLNLSSENKGSSVKVGELTV-IL 124 (125)
T ss_pred EHHHhHhhcCC-C--ccceEEEEEEEccCCCcceeeeeEEE-Ee
Confidence 99999953332 1 11123455554 2 34688887 54
No 59
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.77 E-value=2.8e-18 Score=108.57 Aligned_cols=83 Identities=17% Similarity=0.328 Sum_probs=71.6
Q ss_pred CeeeecCCCC--CCCcccEEEEEEC---CeEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCCCcee
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMG---SQEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSPDEFL 73 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g---~~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d~~i 73 (127)
|++|++|++. .+.+||||++++. ...++|++++ ++.||.|||.|.|.+... ....|.++|||++.++++++|
T Consensus 22 v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~l 100 (124)
T cd08385 22 IIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLI 100 (124)
T ss_pred EEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCc-CCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcee
Confidence 5789999877 6789999999983 3577999999 999999999999987642 245899999999999899999
Q ss_pred EEEe-ccccccc
Q psy7073 74 GKTK-RVKGEAI 84 (127)
Q Consensus 74 G~~~-~l~~~~~ 84 (127)
|++. ++.++..
T Consensus 101 G~~~i~l~~~~~ 112 (124)
T cd08385 101 GEVRVPLLTVDL 112 (124)
T ss_pred EEEEEecCcccC
Confidence 9999 9998873
No 60
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.77 E-value=1.8e-18 Score=109.00 Aligned_cols=82 Identities=17% Similarity=0.304 Sum_probs=69.5
Q ss_pred CeeeecCCCC-CCCcccEEEEEEC-----CeEEEeEEEeCCCCCCeEccEEEEEEecC-CCCeEEEEEEEcCCCC-CCce
Q psy7073 1 MSSGYKLKAP-THKRQVFCQVTMG-----SQEHTTSIISINTLEPKWNSSMQFLIKDV-QEDVLCITVFDKGHYS-PDEF 72 (127)
Q Consensus 1 vi~a~~L~~~-~g~sdpyv~i~~g-----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~-~~~~l~v~v~d~~~~~-~d~~ 72 (127)
|++|+||.++ .|.+||||++++. ..+++|++++ ++.+|.|||+|.|.+... ....|.++|||++..+ ++++
T Consensus 18 Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~-~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~ 96 (119)
T cd08685 18 VLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVP-DSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGL 96 (119)
T ss_pred EEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCcccc-CCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEE
Confidence 5899999888 7889999999994 2467999999 999999999999987543 2246889999998765 4789
Q ss_pred eEEEe-cccccc
Q psy7073 73 LGKTK-RVKGEA 83 (127)
Q Consensus 73 iG~~~-~l~~~~ 83 (127)
||++. ++.++.
T Consensus 97 lG~~~i~l~~~~ 108 (119)
T cd08685 97 LGCMSFGVKSIV 108 (119)
T ss_pred EEEEEecHHHhc
Confidence 99999 999997
No 61
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.77 E-value=6.9e-18 Score=106.83 Aligned_cols=84 Identities=21% Similarity=0.425 Sum_probs=74.0
Q ss_pred CeeeecCCCC--CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecC---CCCeEEEEEEEcCCCCCCceeEE
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDV---QEDVLCITVFDKGHYSPDEFLGK 75 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~---~~~~l~v~v~d~~~~~~d~~iG~ 75 (127)
|++|++|+.. .+.+||||+++++....+|++++.++.+|.||+.|.|.+..+ ....|.|+|||++.+++|++||+
T Consensus 7 V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~ 86 (124)
T cd04049 7 LISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGE 86 (124)
T ss_pred EEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEE
Confidence 5789999876 678999999999888889998872389999999999998876 24689999999999889999999
Q ss_pred Ee-ccccccc
Q psy7073 76 TK-RVKGEAI 84 (127)
Q Consensus 76 ~~-~l~~~~~ 84 (127)
+. ++.++..
T Consensus 87 ~~i~l~~l~~ 96 (124)
T cd04049 87 ATIHLKGLFE 96 (124)
T ss_pred EEEEhHHhhh
Confidence 99 9999985
No 62
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.77 E-value=8e-18 Score=107.29 Aligned_cols=95 Identities=18% Similarity=0.302 Sum_probs=75.6
Q ss_pred CeeeecCCCC--C-CCcccEEEEEEC---CeEEEeEEEeCCCCCCeEccEEEEE-Eec--CCCCeEEEEEEEcCCCCCCc
Q psy7073 1 MSSGYKLKAP--T-HKRQVFCQVTMG---SQEHTTSIISINTLEPKWNSSMQFL-IKD--VQEDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 1 vi~a~~L~~~--~-g~sdpyv~i~~g---~~~~~T~~~~~~~~~P~w~e~~~f~-~~~--~~~~~l~v~v~d~~~~~~d~ 71 (127)
|++|++|++. . +.+||||++.+. .++.+|++++ ++.||.|||+|.|. +.. .....|.++|||++.+++|+
T Consensus 22 Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~-~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~ 100 (128)
T cd08388 22 IIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLR-KTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDD 100 (128)
T ss_pred EEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEc-CCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCc
Confidence 5789999886 3 788999999984 4567999999 99999999999994 332 22347999999999999999
Q ss_pred eeEEEe-cccccccCCCCCccCCCceeeEEEe
Q psy7073 72 FLGKTK-RVKGEAINPREPNLLMGSLCSKYVL 102 (127)
Q Consensus 72 ~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l 102 (127)
+||++. +|.++-..+ .+++..|+.+
T Consensus 101 ~lG~~~i~L~~l~~~~------~~~~~~~~~~ 126 (128)
T cd08388 101 VIGEVVCPLAGADLLN------EGELLVSREI 126 (128)
T ss_pred eeEEEEEeccccCCCC------CceEEEEEec
Confidence 999999 999887421 2356666544
No 63
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.77 E-value=2.3e-18 Score=113.82 Aligned_cols=94 Identities=17% Similarity=0.314 Sum_probs=76.4
Q ss_pred CeeeecCCCC--CCCcccEEEEEE-----CCeEEEeEEEeCCCCCCeEccEEEEEEec---CCCCeEEEEEEEcCCCCCC
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTM-----GSQEHTTSIISINTLEPKWNSSMQFLIKD---VQEDVLCITVFDKGHYSPD 70 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~-----g~~~~~T~~~~~~~~~P~w~e~~~f~~~~---~~~~~l~v~v~d~~~~~~d 70 (127)
|++|+||++. .+.+||||++++ +..+++|++++ ++.||.|||.|.|.... ..+..|.|+|||++.+++|
T Consensus 33 Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~-~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d 111 (162)
T cd04020 33 VKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVK-KSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSN 111 (162)
T ss_pred EEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccC-CCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCC
Confidence 5789999887 688999999988 23678999999 99999999999997532 2335799999999999899
Q ss_pred ceeEEEe-cccccccCCCCCccCCCceeeEEEec
Q psy7073 71 EFLGKTK-RVKGEAINPREPNLLMGSLCSKYVLY 103 (127)
Q Consensus 71 ~~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~ 103 (127)
++||++. ++.++.. .+....|+.+.
T Consensus 112 ~~lG~v~i~l~~~~~--------~~~~~~w~~~~ 137 (162)
T cd04020 112 DFLGGVRLGLGTGKS--------YGQAVDWMDST 137 (162)
T ss_pred ceEEEEEEeCCcccc--------CCCccccccCC
Confidence 9999999 9998873 23345565554
No 64
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.76 E-value=3e-18 Score=108.64 Aligned_cols=82 Identities=18% Similarity=0.249 Sum_probs=71.5
Q ss_pred CeeeecCCCC--CCCcccEEEEEE--C----CeEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCCC
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTM--G----SQEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSPD 70 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~--g----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d 70 (127)
|++|+||+++ .+.+||||++++ + ..+.+|++++ ++.||.|||+|.|.+... .+..|.++|||++.++++
T Consensus 20 V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~-~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~ 98 (124)
T cd08680 20 VEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALE-DQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQE 98 (124)
T ss_pred EeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccC-CCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCce
Confidence 5789999987 678899999998 2 2478999999 999999999999987643 456899999999999999
Q ss_pred ceeEEEe-cccccc
Q psy7073 71 EFLGKTK-RVKGEA 83 (127)
Q Consensus 71 ~~iG~~~-~l~~~~ 83 (127)
++||++. ++.++-
T Consensus 99 ~~lG~~~i~L~~~~ 112 (124)
T cd08680 99 ECLGGAQISLADFE 112 (124)
T ss_pred eEEEEEEEEhhhcc
Confidence 9999999 999885
No 65
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.76 E-value=3.9e-18 Score=107.95 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=69.9
Q ss_pred CeeeecCCCC--CCCcccEEEEEECC-----eEEEeEEEeCCCCCCeEccEEEEEEecC---CCCeEEEEEEEcCCCCCC
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGS-----QEHTTSIISINTLEPKWNSSMQFLIKDV---QEDVLCITVFDKGHYSPD 70 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~-----~~~~T~~~~~~~~~P~w~e~~~f~~~~~---~~~~l~v~v~d~~~~~~d 70 (127)
|++|++|... .+.+||||++++.. .+.+|++++ ++.+|.|||+|.|.+... ....|.++|||++..+++
T Consensus 22 vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~ 100 (125)
T cd04031 22 VLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVK-KTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGEN 100 (125)
T ss_pred EEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccC-CCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCC
Confidence 5789999887 67899999999843 577999999 999999999999975332 345899999999998899
Q ss_pred ceeEEEe-cccccc
Q psy7073 71 EFLGKTK-RVKGEA 83 (127)
Q Consensus 71 ~~iG~~~-~l~~~~ 83 (127)
++||++. ++.+..
T Consensus 101 ~~iG~~~i~l~~~~ 114 (125)
T cd04031 101 DFLGEVVIDLADAL 114 (125)
T ss_pred cEeeEEEEeccccc
Confidence 9999999 999833
No 66
>KOG0696|consensus
Probab=99.76 E-value=1.2e-19 Score=133.06 Aligned_cols=100 Identities=20% Similarity=0.339 Sum_probs=83.1
Q ss_pred CeeeecCCCC--CCCcccEEEEEE-----CCeEEEeEEEeCCCCCCeEccEEEEEEecCC-CCeEEEEEEEcCCCCCCce
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTM-----GSQEHTTSIISINTLEPKWNSSMQFLIKDVQ-EDVLCITVFDKGHYSPDEF 72 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~-----g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~-~~~l~v~v~d~~~~~~d~~ 72 (127)
|.+|+||.+| +|.|||||++.+ +..+++|++++ .++||+|||+|.|.+.... ++.|.|+|||||.-+++||
T Consensus 186 i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik-~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDF 264 (683)
T KOG0696|consen 186 IKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIK-ATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDF 264 (683)
T ss_pred ehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhh-hhcCccccceeEEecccccccceeEEEEecccccccccc
Confidence 3468999999 899999999998 23578999999 9999999999999887553 4579999999999999999
Q ss_pred eEEEe-cccccccCCCCCccCCCceeeEEEecccccceE
Q psy7073 73 LGKTK-RVKGEAINPREPNLLMGSLCSKYVLYKFTVAEI 110 (127)
Q Consensus 73 iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~i 110 (127)
+|+.. -++++.+ .|...|+.|-+...||-
T Consensus 265 MGslSFgisEl~K---------~p~~GWyKlLsqeEGEy 294 (683)
T KOG0696|consen 265 MGSLSFGISELQK---------APVDGWYKLLSQEEGEY 294 (683)
T ss_pred cceecccHHHHhh---------cchhhHHHHhhhhcCce
Confidence 99999 9999995 23456666665555553
No 67
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.76 E-value=1.2e-17 Score=105.73 Aligned_cols=83 Identities=19% Similarity=0.380 Sum_probs=70.8
Q ss_pred CeeeecCCCC--CCCcccEEEEEE---CCeEEEeEEEeCCCCCCeEccEEEEEEec---CCCCeEEEEEEEcCCCCCCce
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTM---GSQEHTTSIISINTLEPKWNSSMQFLIKD---VQEDVLCITVFDKGHYSPDEF 72 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~---g~~~~~T~~~~~~~~~P~w~e~~~f~~~~---~~~~~l~v~v~d~~~~~~d~~ 72 (127)
|++|++|+.. .+.+||||++.+ +....+|++++ ++.+|.|||.|.|.... .....|.++|||++..+++++
T Consensus 22 v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~-~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~ 100 (125)
T cd08386 22 ILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR-KNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDP 100 (125)
T ss_pred EEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeec-CCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcE
Confidence 5789999877 678999999998 34678999999 99999999999997422 233579999999999889999
Q ss_pred eEEEe-ccccccc
Q psy7073 73 LGKTK-RVKGEAI 84 (127)
Q Consensus 73 iG~~~-~l~~~~~ 84 (127)
||++. ++.++..
T Consensus 101 iG~~~i~l~~l~~ 113 (125)
T cd08386 101 IGEVSLPLNKVDL 113 (125)
T ss_pred eeEEEEecccccC
Confidence 99999 9999873
No 68
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.76 E-value=9.2e-18 Score=106.54 Aligned_cols=83 Identities=13% Similarity=0.259 Sum_probs=71.2
Q ss_pred CeeeecCCCC--CCCcccEEEEEEC-----CeEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCC--CC
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMG-----SQEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHY--SP 69 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g-----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~--~~ 69 (127)
|++|+||+.. .+.+||||++.+. ..+++|++++ ++.||.|||+|.|.+... ....|.++|||++.+ ++
T Consensus 22 vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~ 100 (127)
T cd04030 22 VHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKK-DNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSRE 100 (127)
T ss_pred EEEEECCCCccCCCCCCceEEEEEEcCCCCCceEeccccc-CCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCC
Confidence 5789999888 5889999999984 3678999999 999999999999987543 345899999999875 68
Q ss_pred CceeEEEe-ccccccc
Q psy7073 70 DEFLGKTK-RVKGEAI 84 (127)
Q Consensus 70 d~~iG~~~-~l~~~~~ 84 (127)
+++||++. ++.++..
T Consensus 101 ~~~iG~~~i~l~~l~~ 116 (127)
T cd04030 101 KKLLGQVLIDLSDLDL 116 (127)
T ss_pred CceEEEEEEecccccc
Confidence 99999999 9999863
No 69
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.75 E-value=5.1e-18 Score=108.78 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=72.2
Q ss_pred CeeeecCCCC--CCCcccEEEEEEC-------CeEEEeEEEeCCCCCCeEccEEEEEEecC----CCCeEEEEEEEcCCC
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMG-------SQEHTTSIISINTLEPKWNSSMQFLIKDV----QEDVLCITVFDKGHY 67 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g-------~~~~~T~~~~~~~~~P~w~e~~~f~~~~~----~~~~l~v~v~d~~~~ 67 (127)
|++|++|+.+ .|.+||||++++. ...++|++++ ++.||.|||.|.|.+... ....|.++|||++.+
T Consensus 22 Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~ 100 (133)
T cd04009 22 ILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKK-KTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLL 100 (133)
T ss_pred EEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCc-CCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCC
Confidence 5789999887 6889999999984 3478999999 999999999999987652 235799999999999
Q ss_pred CCCceeEEEe-ccccccc
Q psy7073 68 SPDEFLGKTK-RVKGEAI 84 (127)
Q Consensus 68 ~~d~~iG~~~-~l~~~~~ 84 (127)
+++++||++. ++.++..
T Consensus 101 ~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 101 GSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred CCCcEeEEEEEeHHHCCc
Confidence 8899999999 9999984
No 70
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.74 E-value=1.5e-17 Score=107.23 Aligned_cols=80 Identities=15% Similarity=0.252 Sum_probs=67.7
Q ss_pred CeeeecCCCCC----CCcccEEEEEECC-----eEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCC
Q psy7073 1 MSSGYKLKAPT----HKRQVFCQVTMGS-----QEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSP 69 (127)
Q Consensus 1 vi~a~~L~~~~----g~sdpyv~i~~g~-----~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~ 69 (127)
|++|+||.++. +.+||||++++.. .+.+|++.+ +++||+|||.|.|.+... .+..|.++|||++.+++
T Consensus 21 V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k-~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~ 99 (138)
T cd08407 21 VIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAK-HKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQ 99 (138)
T ss_pred EEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceee-CCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcC
Confidence 57899998873 4589999999832 367899999 999999999999987643 34579999999999999
Q ss_pred CceeEEEe-cccc
Q psy7073 70 DEFLGKTK-RVKG 81 (127)
Q Consensus 70 d~~iG~~~-~l~~ 81 (127)
+++||++. ++..
T Consensus 100 ~d~iG~v~lg~~~ 112 (138)
T cd08407 100 SLPLGRCSLGLHT 112 (138)
T ss_pred cceeceEEecCcC
Confidence 99999999 8753
No 71
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.74 E-value=1.4e-17 Score=106.34 Aligned_cols=100 Identities=20% Similarity=0.312 Sum_probs=84.2
Q ss_pred CeeeecCCCC--CCCcccEEEEEEC-----CeEEEeEEEeCCCCCCeEccEEEEEEecC-CCCeEEEEEEEcCCCCCCce
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMG-----SQEHTTSIISINTLEPKWNSSMQFLIKDV-QEDVLCITVFDKGHYSPDEF 72 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g-----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~-~~~~l~v~v~d~~~~~~d~~ 72 (127)
|++|++|+.. .+.+||||++.+. ...++|++++ ++.+|.||++|.|.+... ....|.++|||++..+++++
T Consensus 19 i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~-~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~ 97 (131)
T cd04026 19 VREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIK-KTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDF 97 (131)
T ss_pred EEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeec-CCCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcce
Confidence 5789999876 6788999999984 2678999999 999999999999987654 23579999999998888999
Q ss_pred eEEEe-cccccccCCCCCccCCCceeeEEEecccccceE
Q psy7073 73 LGKTK-RVKGEAINPREPNLLMGSLCSKYVLYKFTVAEI 110 (127)
Q Consensus 73 iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~i 110 (127)
||++. ++.++... ....|+.|.+...|+.
T Consensus 98 iG~~~~~l~~l~~~---------~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 98 MGSLSFGVSELIKM---------PVDGWYKLLNQEEGEY 127 (131)
T ss_pred eEEEEEeHHHhCcC---------ccCceEECcCcccccc
Confidence 99999 99999841 3578899888888875
No 72
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.74 E-value=1.3e-17 Score=103.42 Aligned_cols=81 Identities=22% Similarity=0.350 Sum_probs=68.5
Q ss_pred eeeecCCCC--CCCcccEEEEEECC------eEEEeEEEeCCCCCCeEccEEEEEEecCC----CCeEEEEEEEcCCCCC
Q psy7073 2 SSGYKLKAP--THKRQVFCQVTMGS------QEHTTSIISINTLEPKWNSSMQFLIKDVQ----EDVLCITVFDKGHYSP 69 (127)
Q Consensus 2 i~a~~L~~~--~g~sdpyv~i~~g~------~~~~T~~~~~~~~~P~w~e~~~f~~~~~~----~~~l~v~v~d~~~~~~ 69 (127)
++|++|++. .|.+|||+++++.. ..++|++++ ++.+|.|| .|.|...... ...|.++|||++..++
T Consensus 7 i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~-~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~ 84 (110)
T cd04047 7 FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIK-NTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGK 84 (110)
T ss_pred EEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEec-cCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCC
Confidence 689999887 78899999999842 358999999 99999999 6777654321 3589999999999999
Q ss_pred CceeEEEe-ccccccc
Q psy7073 70 DEFLGKTK-RVKGEAI 84 (127)
Q Consensus 70 d~~iG~~~-~l~~~~~ 84 (127)
|++||++. ++.++..
T Consensus 85 d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 85 HDLIGEFETTLDELLK 100 (110)
T ss_pred CcEEEEEEEEHHHHhc
Confidence 99999999 9999983
No 73
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.73 E-value=2.6e-17 Score=103.88 Aligned_cols=82 Identities=17% Similarity=0.367 Sum_probs=70.1
Q ss_pred CeeeecCCCC---CCCcccEEEEEEC-----CeEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCCC
Q psy7073 1 MSSGYKLKAP---THKRQVFCQVTMG-----SQEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSPD 70 (127)
Q Consensus 1 vi~a~~L~~~---~g~sdpyv~i~~g-----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d 70 (127)
|++|+||++. .+.+||||++++. ..+.+|++++ ++.+|.|||+|.|.+... ....|.++|||++.++++
T Consensus 20 v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~ 98 (123)
T cd08521 20 IKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKK-NTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRN 98 (123)
T ss_pred EEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccC-CCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCC
Confidence 5789999876 4688999999882 1468999999 999999999999987643 245899999999999999
Q ss_pred ceeEEEe-cccccc
Q psy7073 71 EFLGKTK-RVKGEA 83 (127)
Q Consensus 71 ~~iG~~~-~l~~~~ 83 (127)
++||++. ++.++.
T Consensus 99 ~~iG~~~i~l~~l~ 112 (123)
T cd08521 99 TFLGEVEIPLDSWD 112 (123)
T ss_pred ceeeEEEEeccccc
Confidence 9999999 999996
No 74
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.72 E-value=4.2e-17 Score=103.41 Aligned_cols=93 Identities=10% Similarity=0.165 Sum_probs=74.9
Q ss_pred CeeeecCCCC--CCCcccEEEEEEC---CeEEEeEEEeCCCCCCeEccEEEEE-Eec--CCCCeEEEEEEEcCCCCCCce
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMG---SQEHTTSIISINTLEPKWNSSMQFL-IKD--VQEDVLCITVFDKGHYSPDEF 72 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g---~~~~~T~~~~~~~~~P~w~e~~~f~-~~~--~~~~~l~v~v~d~~~~~~d~~ 72 (127)
|++|+||++. .|.+||||++.+. .++.+|++.+ + .||.|||+|.|. +.. ..+..|.++|||++.++++++
T Consensus 22 Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~ 99 (124)
T cd08389 22 VIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQR-G-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERL 99 (124)
T ss_pred EEEecCCCchhcCCCCCcEEEEEEccCCcceeeccccc-C-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCce
Confidence 5889999988 6788999998772 4678999888 7 999999999997 443 234679999999999999999
Q ss_pred eEEEe-cccccccCCCCCccCCCceeeEEEec
Q psy7073 73 LGKTK-RVKGEAINPREPNLLMGSLCSKYVLY 103 (127)
Q Consensus 73 iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~ 103 (127)
||++. +|+++.. ......|+.|.
T Consensus 100 lG~~~i~L~~l~~--------~~~~~~w~~L~ 123 (124)
T cd08389 100 IGEKVVPLSQLNL--------EGETTVWLTLE 123 (124)
T ss_pred EEEEEEeccccCC--------CCCceEEEeCC
Confidence 99999 9999963 22356666553
No 75
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.72 E-value=4.1e-17 Score=106.76 Aligned_cols=78 Identities=26% Similarity=0.487 Sum_probs=68.2
Q ss_pred CeeeecCCCC--CCCcccEEEEEECC-----------------------------eEEEeEEEeCCCCCCeEccEEEEEE
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGS-----------------------------QEHTTSIISINTLEPKWNSSMQFLI 49 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~-----------------------------~~~~T~~~~~~~~~P~w~e~~~f~~ 49 (127)
|++|++|.++ .|.+||||++.++. ..++|++++ ++.+|.||+.|.|.+
T Consensus 34 vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~-~tlnP~WnE~F~f~v 112 (153)
T cd08676 34 VIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKP-QTLNPVWNETFRFEV 112 (153)
T ss_pred EEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceec-CCCCCccccEEEEEe
Confidence 5789999887 78999999999842 237899999 999999999999998
Q ss_pred ecCCCCeEEEEEEEcCCCCCCceeEEEe-cccccc
Q psy7073 50 KDVQEDVLCITVFDKGHYSPDEFLGKTK-RVKGEA 83 (127)
Q Consensus 50 ~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~ 83 (127)
..+....|.|+|||++ +++||++. ++.++.
T Consensus 113 ~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~ 143 (153)
T cd08676 113 EDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP 143 (153)
T ss_pred ccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence 7665568999999987 88999999 999988
No 76
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.72 E-value=3.9e-17 Score=105.10 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=67.4
Q ss_pred CeeeecCCCC--CCCcccEEEEEE---CC--eEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCCCc
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTM---GS--QEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~---g~--~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d~ 71 (127)
|++|+||.+. .|.+||||++++ +. .+.+|++++ ++.||.|||+|.|.+... .+..|.|+|||++.+++++
T Consensus 21 Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k-~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~ 99 (136)
T cd08406 21 VVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKR-DDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTP 99 (136)
T ss_pred EEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCcccc-CCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCC
Confidence 5889999887 678999999998 22 256899999 999999999999987643 3457999999999999999
Q ss_pred eeEEEe-ccc
Q psy7073 72 FLGKTK-RVK 80 (127)
Q Consensus 72 ~iG~~~-~l~ 80 (127)
+||++. ...
T Consensus 100 ~iG~v~lg~~ 109 (136)
T cd08406 100 NVGHVIIGPA 109 (136)
T ss_pred eeEEEEECCC
Confidence 999999 654
No 77
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.72 E-value=5.2e-17 Score=103.94 Aligned_cols=80 Identities=23% Similarity=0.380 Sum_probs=69.1
Q ss_pred CeeeecCCCC--CCCcccEEEEEEC-----CeEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCCCc
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMG-----SQEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g-----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d~ 71 (127)
|++|++|+++ .|.+||||++.+. ..+.+|++++ ++.+|.|||+|.|.+... ....|.++|||++..++++
T Consensus 19 Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~ 97 (133)
T cd08384 19 IIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKK-KTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSND 97 (133)
T ss_pred EEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEe-ccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCcc
Confidence 5789999887 6789999999983 2467999999 999999999999987643 3357999999999888999
Q ss_pred eeEEEe-cccc
Q psy7073 72 FLGKTK-RVKG 81 (127)
Q Consensus 72 ~iG~~~-~l~~ 81 (127)
+||++. ++..
T Consensus 98 ~lG~~~i~l~~ 108 (133)
T cd08384 98 YIGGLQLGINA 108 (133)
T ss_pred EEEEEEEecCC
Confidence 999999 9975
No 78
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.72 E-value=1.4e-16 Score=100.62 Aligned_cols=83 Identities=16% Similarity=0.285 Sum_probs=70.9
Q ss_pred CeeeecCCCC---CCCcccEEEEEEC---CeEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCCCce
Q psy7073 1 MSSGYKLKAP---THKRQVFCQVTMG---SQEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSPDEF 72 (127)
Q Consensus 1 vi~a~~L~~~---~g~sdpyv~i~~g---~~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d~~ 72 (127)
|++|++|+++ .+.+||||++++. ....+|++++ ++.+|.|||.|.|.+... ....|.|+|||++..+++++
T Consensus 20 v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~-~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~ 98 (123)
T cd08390 20 LIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKR-KTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCI 98 (123)
T ss_pred EEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEc-CCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcE
Confidence 5789999876 4678999999983 4567899999 999999999999987643 23579999999998888999
Q ss_pred eEEEe-ccccccc
Q psy7073 73 LGKTK-RVKGEAI 84 (127)
Q Consensus 73 iG~~~-~l~~~~~ 84 (127)
||++. ++.++..
T Consensus 99 iG~~~i~L~~l~~ 111 (123)
T cd08390 99 IGHVLFPLKDLDL 111 (123)
T ss_pred EEEEEEeccceec
Confidence 99999 9999984
No 79
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.71 E-value=3.6e-16 Score=97.66 Aligned_cols=74 Identities=20% Similarity=0.496 Sum_probs=62.2
Q ss_pred CeeeecCCCCCCCcccEEEEEEC-----CeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEc-------CCCC
Q psy7073 1 MSSGYKLKAPTHKRQVFCQVTMG-----SQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDK-------GHYS 68 (127)
Q Consensus 1 vi~a~~L~~~~g~sdpyv~i~~g-----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~-------~~~~ 68 (127)
|.+|++|+ +.+||||++.+. ..+++|++++ +++||.|||.|.|.+.. ...|.+.|||+ +..+
T Consensus 5 V~~A~~L~---~~sDPYV~l~v~~~~~~~~~~KTk~i~-~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~~d~~~ 78 (118)
T cd08686 5 VHSAQGFK---QSANLYCTLEVDSFGYFVKKAKTRVCR-DTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVKLDGEG 78 (118)
T ss_pred EEeCCCCC---CCCCCEEEEEEcCccccceeeeeeeec-CCCCCccceEEEEEeCC--CCEEEEEEEEcccccccccccC
Confidence 46788885 568999999883 2468999999 99999999999999864 46999999998 4567
Q ss_pred CCceeEEEe-ccc
Q psy7073 69 PDEFLGKTK-RVK 80 (127)
Q Consensus 69 ~d~~iG~~~-~l~ 80 (127)
.|+++|.+. .|.
T Consensus 79 ~d~~~G~g~i~Ld 91 (118)
T cd08686 79 TDAIMGKGQIQLD 91 (118)
T ss_pred cccEEEEEEEEEC
Confidence 899998888 765
No 80
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.70 E-value=1.3e-16 Score=102.55 Aligned_cols=81 Identities=30% Similarity=0.393 Sum_probs=68.8
Q ss_pred CeeeecCCCC--CCCcccEEEEEE--CC---eEEEeEEEeCCCCCCeEccEEEEEEec--CCCCeEEEEEEEcCCCCCCc
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTM--GS---QEHTTSIISINTLEPKWNSSMQFLIKD--VQEDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~--g~---~~~~T~~~~~~~~~P~w~e~~~f~~~~--~~~~~l~v~v~d~~~~~~d~ 71 (127)
|++|++|.+. .|.+||||++.+ +. .+.+|++++ ++.+|.|||.|.|.+.. ..+..|.|+|||++.+++++
T Consensus 21 vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~ 99 (136)
T cd08405 21 IIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKK-RTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRND 99 (136)
T ss_pred EEEeeCCCccccCCCCCceEEEEEEeCCCccccccCccee-CCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCc
Confidence 5789999876 788999999988 22 357899999 99999999999998753 23457999999999999999
Q ss_pred eeEEEe-ccccc
Q psy7073 72 FLGKTK-RVKGE 82 (127)
Q Consensus 72 ~iG~~~-~l~~~ 82 (127)
+||++. ++.+.
T Consensus 100 ~lG~~~i~~~~~ 111 (136)
T cd08405 100 LIGKIYLGWKSG 111 (136)
T ss_pred EeEEEEECCccC
Confidence 999999 99864
No 81
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.69 E-value=1.1e-16 Score=102.94 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=68.3
Q ss_pred CeeeecCCCC--CCCcccEEEEEEC--C---eEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCCCc
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMG--S---QEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g--~---~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d~ 71 (127)
|++|++|++. .|.+||||++++. . .+.+|++++ ++.||.|+|+|.|.+... ....|.|+|||++.+++++
T Consensus 21 vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k-~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~ 99 (136)
T cd08404 21 VLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKK-CTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNE 99 (136)
T ss_pred EEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCcccc-CCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCc
Confidence 5789999877 7889999999982 2 357899999 999999999999987542 2347899999999999999
Q ss_pred eeEEEe-cccc
Q psy7073 72 FLGKTK-RVKG 81 (127)
Q Consensus 72 ~iG~~~-~l~~ 81 (127)
+||++. ++..
T Consensus 100 ~iG~~~~~~~~ 110 (136)
T cd08404 100 VIGRLVLGPKA 110 (136)
T ss_pred cEEEEEECCcC
Confidence 999999 9987
No 82
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.69 E-value=9e-16 Score=97.32 Aligned_cols=103 Identities=20% Similarity=0.389 Sum_probs=81.0
Q ss_pred CeeeecCCCC----CCCcccEEEEEE------CCeEEEeEEEeCCCC-CCeEccEEEEEEecCCCCeEEEEEEEcCCCCC
Q psy7073 1 MSSGYKLKAP----THKRQVFCQVTM------GSQEHTTSIISINTL-EPKWNSSMQFLIKDVQEDVLCITVFDKGHYSP 69 (127)
Q Consensus 1 vi~a~~L~~~----~g~sdpyv~i~~------g~~~~~T~~~~~~~~-~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~ 69 (127)
|++|++|+.+ .+..||||++++ +..+.+|+++. ++. +|.|||+|.|.+..+....|.++|||++.. +
T Consensus 8 vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~-~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~-~ 85 (128)
T cd00275 8 IISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVK-NNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSG-D 85 (128)
T ss_pred EEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeec-CCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCC-C
Confidence 5789999875 367899999999 24568999988 665 999999999998766545799999999987 8
Q ss_pred CceeEEEe-cccccccCCCCCccCCCceeeEEEec---c--cccceEEEEeEEE
Q psy7073 70 DEFLGKTK-RVKGEAINPREPNLLMGSLCSKYVLY---K--FTVAEIIQRKFKL 117 (127)
Q Consensus 70 d~~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~---~--~~~G~i~~~~~~l 117 (127)
+++||++. ++.++.. + ..++.+. + ...|.|.+ ++++
T Consensus 86 ~~~iG~~~~~l~~l~~---------g--~~~~~l~~~~~~~~~~~~l~v-~~~~ 127 (128)
T cd00275 86 DDFLGQACLPLDSLRQ---------G--YRHVPLLDSKGEPLELSTLFV-HIDI 127 (128)
T ss_pred CcEeEEEEEEhHHhcC---------c--eEEEEecCCCCCCCcceeEEE-EEEE
Confidence 99999999 9998852 2 2344543 2 33588988 8776
No 83
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.69 E-value=1.5e-16 Score=102.25 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=68.0
Q ss_pred CeeeecCCCC--CCCcccEEEEEEC--C---eEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCCCc
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMG--S---QEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g--~---~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d~ 71 (127)
|++|++|+.+ .|.+||||+++++ . ...+|++++ ++.+|.|||.|.|.+... ....|.++|||++.+++|+
T Consensus 21 Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~ 99 (136)
T cd08402 21 ILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-RTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKND 99 (136)
T ss_pred EEEeeCCCcccCCCCCCCeEEEEEEECCcccceeecccee-CCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCc
Confidence 5789999877 6889999999983 2 357899999 999999999999987543 2347999999999999999
Q ss_pred eeEEEe-cccc
Q psy7073 72 FLGKTK-RVKG 81 (127)
Q Consensus 72 ~iG~~~-~l~~ 81 (127)
+||++. ++..
T Consensus 100 ~iG~~~i~~~~ 110 (136)
T cd08402 100 PIGKVVLGCNA 110 (136)
T ss_pred eeEEEEECCcc
Confidence 999999 9875
No 84
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.69 E-value=1e-16 Score=134.76 Aligned_cols=108 Identities=19% Similarity=0.394 Sum_probs=90.5
Q ss_pred CeeeecCCCCCCCcccEEEEEECCe-EEEeEEEeCCCCCCeEccEEEEEEecCC-CCeEEEEEEEcCCCCCCceeEEEe-
Q psy7073 1 MSSGYKLKAPTHKRQVFCQVTMGSQ-EHTTSIISINTLEPKWNSSMQFLIKDVQ-EDVLCITVFDKGHYSPDEFLGKTK- 77 (127)
Q Consensus 1 vi~a~~L~~~~g~sdpyv~i~~g~~-~~~T~~~~~~~~~P~w~e~~~f~~~~~~-~~~l~v~v~d~~~~~~d~~iG~~~- 77 (127)
|++|.||....|.+||||++.+|++ +.||++++ ++.||.|||.|.|.+..|. +.+|.|+|||+|.++ ++.+|.++
T Consensus 1986 V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk-~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~-kd~~G~~~i 2063 (2102)
T PLN03200 1986 IKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVS-HSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG-KSSLGKVTI 2063 (2102)
T ss_pred EeeccccccccCCCCCeEEEEECCCCcccccccC-CCCCCCcccceeeeecCCCCCCceEEEEEecCccC-CCCCceEEE
Confidence 4688999855799999999999965 78999999 9999999999999888764 357999999999985 55999999
Q ss_pred cccccccCCCCCccCCCceeeEEEecc--cccce---EEEEeEEEEEec
Q psy7073 78 RVKGEAINPREPNLLMGSLCSKYVLYK--FTVAE---IIQRKFKLLRFD 121 (127)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~l~~--~~~G~---i~~~~~~l~~~~ 121 (127)
++.++.. ++.+..||.+.. ...|+ |.+ ++++-.
T Consensus 2064 ~l~~vv~--------~~~~~~~~~L~~~~~k~G~~~~~~~---e~~w~~ 2101 (2102)
T PLN03200 2064 QIDRVVM--------EGTYSGEYSLNPESNKDGSSRTLEI---EFQWSN 2101 (2102)
T ss_pred EHHHHhc--------CceeeeeeecCcccccCCCcceEEE---EEEecC
Confidence 9999995 566888998885 56798 766 656543
No 85
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.68 E-value=5.4e-16 Score=99.18 Aligned_cols=81 Identities=17% Similarity=0.352 Sum_probs=67.0
Q ss_pred CeeeecCCCC--CCCcccEEEEEE---CC--eEEEeEEEeCCCC-CCeEccEEEEEEecCC-CCeEEEEEEEcCCCCCCc
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTM---GS--QEHTTSIISINTL-EPKWNSSMQFLIKDVQ-EDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~---g~--~~~~T~~~~~~~~-~P~w~e~~~f~~~~~~-~~~l~v~v~d~~~~~~d~ 71 (127)
|++|+||+++ .+.+||||++++ ++ .+.+|++.+ ++. +|.|||+|.|.+.... +-.|.|+|||++..++++
T Consensus 20 VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k-~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~ 98 (135)
T cd08692 20 ILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVK-SSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKH 98 (135)
T ss_pred EEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEE-CCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCc
Confidence 5889999987 456699999998 22 478899999 885 6999999999987542 236889999999989999
Q ss_pred eeEEEe-ccccc
Q psy7073 72 FLGKTK-RVKGE 82 (127)
Q Consensus 72 ~iG~~~-~l~~~ 82 (127)
+||++. ..++.
T Consensus 99 ~IG~v~lG~~~~ 110 (135)
T cd08692 99 FLGQVWISSDSS 110 (135)
T ss_pred eEEEEEECCccC
Confidence 999999 88753
No 86
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.68 E-value=2.3e-15 Score=97.63 Aligned_cols=106 Identities=11% Similarity=0.151 Sum_probs=81.4
Q ss_pred CeeeecCCCCCCCcccEEEEEECCeE-EEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCC-CC---CCceeEE
Q psy7073 1 MSSGYKLKAPTHKRQVFCQVTMGSQE-HTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGH-YS---PDEFLGK 75 (127)
Q Consensus 1 vi~a~~L~~~~g~sdpyv~i~~g~~~-~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~-~~---~d~~iG~ 75 (127)
|++|++|+++. +|||.+.+++.. .+|+++. ++.+|.|+|.|.|....+. ..+.|.||+.+. .+ ++++||.
T Consensus 17 V~EAk~Lp~~~---~~Y~~i~Ld~~~vaRT~v~~-~~~nP~W~E~F~f~~~~~~-~~l~v~v~k~~~~~~~~~~~~~IG~ 91 (146)
T cd04013 17 IIEAKGLPPKK---RYYCELCLDKTLYARTTSKL-KTDTLFWGEHFEFSNLPPV-SVITVNLYRESDKKKKKDKSQLIGT 91 (146)
T ss_pred EEEccCCCCcC---CceEEEEECCEEEEEEEEEc-CCCCCcceeeEEecCCCcc-cEEEEEEEEccCccccccCCcEEEE
Confidence 57899997643 799999998755 6999999 9999999999999765544 579999987643 22 5789999
Q ss_pred Ee-cccccccCCCCCccCCCceeeEEEeccc-------------ccceEEEEeEEEEEe
Q psy7073 76 TK-RVKGEAINPREPNLLMGSLCSKYVLYKF-------------TVAEIIQRKFKLLRF 120 (127)
Q Consensus 76 ~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~G~i~~~~~~l~~~ 120 (127)
+. |++++.. ....++||.+... +.+.|++ ++.++..
T Consensus 92 V~Ip~~~l~~--------~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lri-k~rf~~~ 141 (146)
T cd04013 92 VNIPVTDVSS--------RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRI-KARYQST 141 (146)
T ss_pred EEEEHHHhcC--------CCcccEEEEeecCCCCCccccccccCCCCEEEE-EEEEEEe
Confidence 99 9999983 2347889887622 2267777 6666554
No 87
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.67 E-value=4.1e-16 Score=100.59 Aligned_cols=82 Identities=17% Similarity=0.322 Sum_probs=69.4
Q ss_pred CeeeecCCCC--CCCcccEEEEEEC--C----eEEEeEEEeCCCCCCeEccEEEEEEec--CCCCeEEEEEEEcCCCCCC
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMG--S----QEHTTSIISINTLEPKWNSSMQFLIKD--VQEDVLCITVFDKGHYSPD 70 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g--~----~~~~T~~~~~~~~~P~w~e~~~f~~~~--~~~~~l~v~v~d~~~~~~d 70 (127)
|++|+||+++ .|.+||||++.+. . .+.+|++++ ++.||.|||+|.|.+.. .....|.++|||++.++++
T Consensus 21 VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~-~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~ 99 (138)
T cd08408 21 VIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRR-GQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRK 99 (138)
T ss_pred EEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeec-CCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCC
Confidence 5789999987 6789999999982 1 256899999 99999999999999864 2345899999999999999
Q ss_pred ceeEEEe-cccccc
Q psy7073 71 EFLGKTK-RVKGEA 83 (127)
Q Consensus 71 ~~iG~~~-~l~~~~ 83 (127)
++||++. ++...-
T Consensus 100 ~~iG~v~l~~~~~~ 113 (138)
T cd08408 100 EMIGWFSLGLNSSG 113 (138)
T ss_pred cEEEEEEECCcCCC
Confidence 9999999 877443
No 88
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.67 E-value=3.4e-15 Score=93.32 Aligned_cols=103 Identities=16% Similarity=0.193 Sum_probs=76.9
Q ss_pred CeeeecCCCCCCCcccEEEEEECC-eEEEeEEEeCCCCCCeEccEEEEEEecCC--CCeEEEEEEEcCCCCCCceeEEEe
Q psy7073 1 MSSGYKLKAPTHKRQVFCQVTMGS-QEHTTSIISINTLEPKWNSSMQFLIKDVQ--EDVLCITVFDKGHYSPDEFLGKTK 77 (127)
Q Consensus 1 vi~a~~L~~~~g~sdpyv~i~~g~-~~~~T~~~~~~~~~P~w~e~~~f~~~~~~--~~~l~v~v~d~~~~~~d~~iG~~~ 77 (127)
|++|++|+.. +.+||||.++++. ..++|++++ + .+|.|||+|.|.+.... ...|.+.+||.+..+.+.++|.+.
T Consensus 6 vi~a~~l~~~-~~~dpyv~v~~~~~~~~kT~~~~-~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~ 82 (117)
T cd08383 6 ILEAKNLPSK-GTRDPYCTVSLDQVEVARTKTVE-K-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVA 82 (117)
T ss_pred EEEecCCCcC-CCCCceEEEEECCEEeEecceEE-C-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEE
Confidence 5789999887 8899999999976 457999999 8 99999999999886532 246888889988765566666655
Q ss_pred cccccccCCCCCccCCCceeeEEEeccc-----ccceEEEEeEE
Q psy7073 78 RVKGEAINPREPNLLMGSLCSKYVLYKF-----TVAEIIQRKFK 116 (127)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~G~i~~~~~~ 116 (127)
+..+.. .+....|+.|... ..|+|++ ++.
T Consensus 83 -l~~~~~--------~~~~~~w~~L~~~~~~~~~~G~l~l-~~~ 116 (117)
T cd08383 83 -LSKLDL--------GQGKDEWFPLTPVDPDSEVQGSVRL-RAR 116 (117)
T ss_pred -ecCcCC--------CCcceeEEECccCCCCCCcCceEEE-EEE
Confidence 333331 2235788888743 2699988 554
No 89
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.66 E-value=5.2e-16 Score=99.52 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=66.9
Q ss_pred CeeeecCCCC--CCCcccEEEEEEC---C--eEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCCCc
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMG---S--QEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g---~--~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d~ 71 (127)
|++|++|+++ .|.+||||++++. . .+.+|++++ ++.+|.|||.|.|.+... ....|.++|||++.+++++
T Consensus 20 v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~ 98 (134)
T cd08403 20 IIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKK-NTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNE 98 (134)
T ss_pred EEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCccc-CCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCc
Confidence 5789999887 7889999999983 1 367899988 999999999999987532 2346999999999999999
Q ss_pred eeEEEe-ccc
Q psy7073 72 FLGKTK-RVK 80 (127)
Q Consensus 72 ~iG~~~-~l~ 80 (127)
+||++. ++.
T Consensus 99 ~IG~~~l~~~ 108 (134)
T cd08403 99 LIGVCRVGPN 108 (134)
T ss_pred eeEEEEECCC
Confidence 999999 876
No 90
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.66 E-value=5.4e-16 Score=99.66 Aligned_cols=78 Identities=21% Similarity=0.404 Sum_probs=65.6
Q ss_pred CeeeecCCCC--CCCcccEEEEEE--CC---eEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCCCc
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTM--GS---QEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~--g~---~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d~ 71 (127)
|++|++|+.+ .|.+||||++++ +. .+.+|++++ ++.||.|||+|.|.+... ....|.|+|||++..++++
T Consensus 20 vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~ 98 (135)
T cd08410 20 IIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMR-GTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSND 98 (135)
T ss_pred EEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCcccc-CCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCc
Confidence 5789999877 788999999997 32 357899999 999999999999987532 2346999999999989999
Q ss_pred eeEEEe-cc
Q psy7073 72 FLGKTK-RV 79 (127)
Q Consensus 72 ~iG~~~-~l 79 (127)
+||++. ..
T Consensus 99 ~iG~~~l~~ 107 (135)
T cd08410 99 FIGRIVIGQ 107 (135)
T ss_pred EEEEEEEcC
Confidence 999988 54
No 91
>KOG1028|consensus
Probab=99.65 E-value=1.5e-15 Score=113.51 Aligned_cols=110 Identities=17% Similarity=0.241 Sum_probs=85.8
Q ss_pred CeeeecCCCC--CCCcccEEEEEEC---CeEEEeEEEeCCCCCCeEccEEEEEEec--CCCCeEEEEEEEcCCCCCCcee
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMG---SQEHTTSIISINTLEPKWNSSMQFLIKD--VQEDVLCITVFDKGHYSPDEFL 73 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g---~~~~~T~~~~~~~~~P~w~e~~~f~~~~--~~~~~l~v~v~d~~~~~~d~~i 73 (127)
|++|.+|+.+ .|.+||||++++. +.+.+|++.+ +++||.|||+|.|.+.. .....|.++|||+|.+++|++|
T Consensus 173 V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r-~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~i 251 (421)
T KOG1028|consen 173 VIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHR-KTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFI 251 (421)
T ss_pred EEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeee-cCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEE
Confidence 5789999888 5779999999994 4688999999 99999999999998543 2456899999999999999999
Q ss_pred EEEe-cccccccCCCCCccCCCceeeEEEecc-----c-ccceEEEEeEEEEEe
Q psy7073 74 GKTK-RVKGEAINPREPNLLMGSLCSKYVLYK-----F-TVAEIIQRKFKLLRF 120 (127)
Q Consensus 74 G~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~-----~-~~G~i~~~~~~l~~~ 120 (127)
|++. +|..+-. . .....|..+.. . ..|||.+ .+.+.+.
T Consensus 252 Gev~~~l~~~~~-~-------~~~~~w~~l~~~~~~~~~~~gel~~-sL~Y~p~ 296 (421)
T KOG1028|consen 252 GEVILPLGEVDL-L-------STTLFWKDLQPSSTDSEELAGELLL-SLCYLPT 296 (421)
T ss_pred EEEEecCccccc-c-------ccceeeeccccccCCcccccceEEE-EEEeecC
Confidence 9999 9887763 1 11344544431 1 1268888 7777655
No 92
>PLN03008 Phospholipase D delta
Probab=99.65 E-value=1.7e-15 Score=118.96 Aligned_cols=99 Identities=18% Similarity=0.288 Sum_probs=80.1
Q ss_pred CCcccEEEEEECCe-EEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-cccccccCCCCC
Q psy7073 12 HKRQVFCQVTMGSQ-EHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-RVKGEAINPREP 89 (127)
Q Consensus 12 g~sdpyv~i~~g~~-~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~~~~~~~ 89 (127)
+++||||+|.+++. +.+|++++ ++.||+|||+|.|.+..+. ..|.++|||++.++ +++||++. |++++..
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~-n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~----- 146 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLK-NSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIAS----- 146 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCC-CCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCC-----
Confidence 57899999999764 67999999 9999999999999998865 58999999999986 68999999 9999884
Q ss_pred ccCCCceeeEEEecc------cccceEEEEeEEEEEecc
Q psy7073 90 NLLMGSLCSKYVLYK------FTVAEIIQRKFKLLRFDR 122 (127)
Q Consensus 90 ~~~~~~~~~~~~l~~------~~~G~i~~~~~~l~~~~~ 122 (127)
......|+.+.. .+.|+|+| ++.+.++.+
T Consensus 147 ---Ge~vd~Wl~Ll~~~~kp~k~~~kl~v-~lqf~pv~~ 181 (868)
T PLN03008 147 ---GERISGWFPVLGASGKPPKAETAIFI-DMKFTPFDQ 181 (868)
T ss_pred ---CCceEEEEEccccCCCCCCCCcEEEE-EEEEEEccc
Confidence 224677877652 23478888 666666554
No 93
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.64 E-value=2e-15 Score=95.35 Aligned_cols=82 Identities=20% Similarity=0.331 Sum_probs=68.9
Q ss_pred CeeeecCCCC--CCCcccEEEEEEC-----CeEEEeEEEeCCCCCCeEccEEEEEEecC---CCCeEEEEEEEcCCCCCC
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMG-----SQEHTTSIISINTLEPKWNSSMQFLIKDV---QEDVLCITVFDKGHYSPD 70 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g-----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~---~~~~l~v~v~d~~~~~~d 70 (127)
|++|++|++. .+.+|||+++.+. ....+|++++ ++.+|.||+.|.|..... ....+.++|||++.. .+
T Consensus 21 v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~-~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~ 98 (123)
T cd04035 21 IIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVH-KTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GN 98 (123)
T ss_pred EEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeec-CCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CC
Confidence 5789999876 6789999999982 2478999999 999999999999963222 235899999999987 79
Q ss_pred ceeEEEe-ccccccc
Q psy7073 71 EFLGKTK-RVKGEAI 84 (127)
Q Consensus 71 ~~iG~~~-~l~~~~~ 84 (127)
++||++. ++.++..
T Consensus 99 ~~iG~~~i~l~~l~~ 113 (123)
T cd04035 99 DFLGETRIPLKKLKP 113 (123)
T ss_pred eeEEEEEEEcccCCC
Confidence 9999999 9999995
No 94
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.63 E-value=1.8e-15 Score=96.67 Aligned_cols=80 Identities=24% Similarity=0.340 Sum_probs=69.1
Q ss_pred CeeeecCCCC--CCCcccEEEEEECC-----eEEEeEEEeCCCCCCeEccEEEEEEecCC--CCeEEEEEEEcCCCCCCc
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGS-----QEHTTSIISINTLEPKWNSSMQFLIKDVQ--EDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~-----~~~~T~~~~~~~~~P~w~e~~~f~~~~~~--~~~l~v~v~d~~~~~~d~ 71 (127)
|++|++|+.. .+.+||||++.+.. ..++|++++ ++.+|.||++|.|.+.... ...|.|+|||.+..++++
T Consensus 20 v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~ 98 (134)
T cd00276 20 VLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK-GTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNE 98 (134)
T ss_pred EEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCccee-cCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCc
Confidence 5789999887 67889999999842 356899999 9999999999999876542 458999999999888899
Q ss_pred eeEEEe-cccc
Q psy7073 72 FLGKTK-RVKG 81 (127)
Q Consensus 72 ~iG~~~-~l~~ 81 (127)
+||++. ++.+
T Consensus 99 ~lG~~~i~l~~ 109 (134)
T cd00276 99 VIGQVVLGPDS 109 (134)
T ss_pred eeEEEEECCCC
Confidence 999999 9998
No 95
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.62 E-value=2.6e-15 Score=96.77 Aligned_cols=79 Identities=16% Similarity=0.353 Sum_probs=66.6
Q ss_pred CeeeecCCCC-CCCcccEEEEEEC--C---eEEEeEEEeCCCCCCeEccEEEEEEec--CCCCeEEEEEEEcCCCCCCce
Q psy7073 1 MSSGYKLKAP-THKRQVFCQVTMG--S---QEHTTSIISINTLEPKWNSSMQFLIKD--VQEDVLCITVFDKGHYSPDEF 72 (127)
Q Consensus 1 vi~a~~L~~~-~g~sdpyv~i~~g--~---~~~~T~~~~~~~~~P~w~e~~~f~~~~--~~~~~l~v~v~d~~~~~~d~~ 72 (127)
|++|+||.+. .+.+||||++.+. . .+.+|++++ ++.||.|||.|.|.+.. .....|.++|||++..+++++
T Consensus 21 V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~-~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~ 99 (137)
T cd08409 21 VLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVD-GAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKL 99 (137)
T ss_pred EEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEe-CCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcce
Confidence 5789999877 6778999999983 1 366899999 99999999999998853 233579999999999889999
Q ss_pred eEEEe-ccc
Q psy7073 73 LGKTK-RVK 80 (127)
Q Consensus 73 iG~~~-~l~ 80 (127)
||++. ...
T Consensus 100 lG~v~ig~~ 108 (137)
T cd08409 100 LGRVVLGPF 108 (137)
T ss_pred EEEEEECCc
Confidence 99999 754
No 96
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.60 E-value=3.4e-15 Score=87.69 Aligned_cols=76 Identities=28% Similarity=0.524 Sum_probs=66.6
Q ss_pred CeeeecCCCC--CCCcccEEEEEECC---eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEE
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGS---QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGK 75 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~---~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 75 (127)
|++|++|... .+..+||+++.++. ...+|++++ ++.+|.|++.|.|.+..+....|.|+|||++..++|++||+
T Consensus 5 I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~ 83 (85)
T PF00168_consen 5 IHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKK-NTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGE 83 (85)
T ss_dssp EEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBS-SBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEE
T ss_pred EEEEECCCCcccCCcccccceeecceeeeeeeeeeeee-ccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEE
Confidence 5789999885 67889999999954 569999999 89999999999999776655679999999999988999999
Q ss_pred Ee
Q psy7073 76 TK 77 (127)
Q Consensus 76 ~~ 77 (127)
+.
T Consensus 84 ~~ 85 (85)
T PF00168_consen 84 VK 85 (85)
T ss_dssp EE
T ss_pred EC
Confidence 74
No 97
>KOG1011|consensus
Probab=99.48 E-value=4.4e-14 Score=108.28 Aligned_cols=110 Identities=24% Similarity=0.350 Sum_probs=88.3
Q ss_pred eeeecCCCC--CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCC-----------C
Q psy7073 2 SSGYKLKAP--THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHY-----------S 68 (127)
Q Consensus 2 i~a~~L~~~--~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~-----------~ 68 (127)
+.|.+|... .|++||||....|+.+.+|+++- ..+||+|||.|+|.+.+.. +.+++.|||+|.. .
T Consensus 302 lcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~-~~lnpvw~ekfhfechnst-drikvrvwded~dlksklrqkl~re 379 (1283)
T KOG1011|consen 302 LCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIH-QELNPVWNEKFHFECHNST-DRIKVRVWDEDNDLKSKLRQKLTRE 379 (1283)
T ss_pred eecccceecccCCCCCCcEEEeecccchhhHhhh-hccchhhhhheeeeecCCC-ceeEEEEecCcccHHHHHHHHhhhc
Confidence 456777555 89999999999999999999999 9999999999999998875 5899999998752 2
Q ss_pred CCceeEEEe-cccccccCCCCCccCCCceeeEEEec-----ccccceEEEEeEEEEEecccC
Q psy7073 69 PDEFLGKTK-RVKGEAINPREPNLLMGSLCSKYVLY-----KFTVAEIIQRKFKLLRFDREN 124 (127)
Q Consensus 69 ~d~~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~i~~~~~~l~~~~~~~ 124 (127)
+|||+|++. .+..+. |.+..|+.|. +..+|-|.+ .+.+...++|.
T Consensus 380 sddflgqtvievrtls----------gemdvwynlekrtdksavsgairl-hisveikgeek 430 (1283)
T KOG1011|consen 380 SDDFLGQTVIEVRTLS----------GEMDVWYNLEKRTDKSAVSGAIRL-HISVEIKGEEK 430 (1283)
T ss_pred ccccccceeEEEEecc----------cchhhhcchhhccchhhccceEEE-EEEEEEcCccc
Confidence 688999976 655443 4567777765 334699988 88888777765
No 98
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.47 E-value=5.9e-13 Score=85.10 Aligned_cols=83 Identities=18% Similarity=0.313 Sum_probs=67.6
Q ss_pred CeeeecCCCC----CC--CcccEEEEEE-C--CeEEEeEEEeCCCCC--CeEccEEEEEEecC-----------------
Q psy7073 1 MSSGYKLKAP----TH--KRQVFCQVTM-G--SQEHTTSIISINTLE--PKWNSSMQFLIKDV----------------- 52 (127)
Q Consensus 1 vi~a~~L~~~----~g--~sdpyv~i~~-g--~~~~~T~~~~~~~~~--P~w~e~~~f~~~~~----------------- 52 (127)
|.+|+++... .| .+||||+..+ + ..+++|.++. ++++ |.||+.|.|.+..+
T Consensus 6 Iw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHy-rslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~ 84 (133)
T cd08374 6 VWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHY-RSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSL 84 (133)
T ss_pred EEECcCCcccccccCCccccCeEEEEEEccCcccccccceEE-ecCCCCcEEeEEEEEeeecCCccceeEEEeecccccc
Confidence 3567774432 45 4999999998 3 4678999999 9999 99999999876541
Q ss_pred ------CCCeEEEEEEEcCCCCCCceeEEEe-ccccccc
Q psy7073 53 ------QEDVLCITVFDKGHYSPDEFLGKTK-RVKGEAI 84 (127)
Q Consensus 53 ------~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~~ 84 (127)
....|.++|||.|.+++|++||++. ++..+.+
T Consensus 85 ~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 85 DETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred CcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 2346899999999999999999999 9998885
No 99
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.44 E-value=1.5e-12 Score=78.01 Aligned_cols=83 Identities=24% Similarity=0.506 Sum_probs=70.7
Q ss_pred CeeeecCCCC--CCCcccEEEEEECC---eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEE
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGS---QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGK 75 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~---~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 75 (127)
|++|.++... .+..+||+++.+.. ...+|+.+. ++.+|.|++.|.|.+..+....|.++|||.+..+.+.++|.
T Consensus 6 i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~ 84 (101)
T smart00239 6 IISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVK-NTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQ 84 (101)
T ss_pred EEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEec-CCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEE
Confidence 4678888776 35789999999965 478999999 88899999999999877644689999999998777899999
Q ss_pred Ee-ccccccc
Q psy7073 76 TK-RVKGEAI 84 (127)
Q Consensus 76 ~~-~l~~~~~ 84 (127)
+. ++.++..
T Consensus 85 ~~~~l~~~~~ 94 (101)
T smart00239 85 VTIPLSDLLL 94 (101)
T ss_pred EEEEHHHccc
Confidence 99 9998874
No 100
>KOG2059|consensus
Probab=99.41 E-value=5.9e-13 Score=102.35 Aligned_cols=113 Identities=15% Similarity=0.248 Sum_probs=93.7
Q ss_pred CeeeecCCCC--CCCcccEEEEEECC-eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGS-QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK 77 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~-~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~ 77 (127)
|.+|+||++. .|.+||||.|.+.+ ...+|.++. +++.|.|.|.|.|.+.... ..|.+-|||.| +++|+.||.+.
T Consensus 11 i~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~-ksL~PF~gEe~~~~iP~~F-~~l~fYv~D~d-~~~D~~IGKva 87 (800)
T KOG2059|consen 11 IGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVE-KSLCPFFGEEFYFEIPRTF-RYLSFYVWDRD-LKRDDIIGKVA 87 (800)
T ss_pred EeecccCCCCCCCCCcCcceEEeecchhhhhhhhhh-hhcCCccccceEEecCcce-eeEEEEEeccc-cccccccceee
Confidence 4689999887 78999999999975 678999999 9999999999999998776 58999999999 89999999999
Q ss_pred -cccccccCCCCCccCCCceeeEEEeccc-----ccceEEEEeEEEEEecccCC
Q psy7073 78 -RVKGEAINPREPNLLMGSLCSKYVLYKF-----TVAEIIQRKFKLLRFDRENC 125 (127)
Q Consensus 78 -~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~G~i~~~~~~l~~~~~~~~ 125 (127)
.=++|-. ... ...||.|..+ .+|+|++ ++.+....+++|
T Consensus 88 i~re~l~~-~~~-------~d~W~~L~~VD~dsEVQG~v~l-~l~~~e~~~~~~ 132 (800)
T KOG2059|consen 88 IKREDLHM-YPG-------KDTWFSLQPVDPDSEVQGKVHL-ELALTEAIQSSG 132 (800)
T ss_pred eeHHHHhh-CCC-------CccceeccccCCChhhceeEEE-EEEeccccCCCc
Confidence 8777773 222 4667777643 3599999 888877666654
No 101
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.37 E-value=7.5e-12 Score=74.60 Aligned_cols=82 Identities=30% Similarity=0.601 Sum_probs=70.9
Q ss_pred CeeeecCCCC--CCCcccEEEEEECC-eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGS-QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK 77 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~-~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~ 77 (127)
|++|+++... .+..+||+.+.+.. ..++|.++. ++.+|.|++.|.|.+.......+.++||+.+..+.+++||.+.
T Consensus 5 i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~-~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~ 83 (102)
T cd00030 5 VIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVK-NTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVE 83 (102)
T ss_pred EEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeC-CCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEE
Confidence 4678888764 56789999999976 888999999 8899999999999887743468999999999887789999999
Q ss_pred -cccccc
Q psy7073 78 -RVKGEA 83 (127)
Q Consensus 78 -~l~~~~ 83 (127)
++.++.
T Consensus 84 ~~l~~l~ 90 (102)
T cd00030 84 IPLSELL 90 (102)
T ss_pred EeHHHhh
Confidence 999887
No 102
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.36 E-value=2.8e-12 Score=103.11 Aligned_cols=112 Identities=20% Similarity=0.231 Sum_probs=87.9
Q ss_pred eeeecCCCC--CCCcccEEEEEECC-eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-
Q psy7073 2 SSGYKLKAP--THKRQVFCQVTMGS-QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK- 77 (127)
Q Consensus 2 i~a~~L~~~--~g~sdpyv~i~~g~-~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~- 77 (127)
.+|.||+.. +|.+||||++.+.. ..++|++++ +++||.|||.+...+..-..+.+.+.|+||+.-.+++.||.+.
T Consensus 1047 ~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~K-ktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~i 1125 (1227)
T COG5038 1047 RSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVK-KTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEI 1125 (1227)
T ss_pred eccCCCcccccCCCCCceEEEEecceecccccchh-ccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccc
Confidence 467888877 78899999999954 589999999 9999999999999887655578999999999988999999999
Q ss_pred cccccccCCCCCccCCCceeeEEEeccc----ccceEEEEeEEEEEeccc
Q psy7073 78 RVKGEAINPREPNLLMGSLCSKYVLYKF----TVAEIIQRKFKLLRFDRE 123 (127)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~----~~G~i~~~~~~l~~~~~~ 123 (127)
+|..+.. .++....+.+.+. ..|.++. .+.++.....
T Consensus 1126 dL~~l~~--------~~~~n~~i~ldgk~~~~~~g~~~~-~~~~r~~~~~ 1166 (1227)
T COG5038 1126 DLSKLEP--------GGTTNSNIPLDGKTFIVLDGTLHP-GFNFRSKYAL 1166 (1227)
T ss_pred cHhhcCc--------CCccceeeeccCcceEecccEeec-ceecchhhhh
Confidence 9999884 2233334444433 3577777 6666655433
No 103
>PLN02223 phosphoinositide phospholipase C
Probab=99.33 E-value=2.9e-11 Score=91.90 Aligned_cols=72 Identities=19% Similarity=0.397 Sum_probs=61.1
Q ss_pred CCcccEEEEEE-C----CeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-ccccccc
Q psy7073 12 HKRQVFCQVTM-G----SQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-RVKGEAI 84 (127)
Q Consensus 12 g~sdpyv~i~~-g----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~~ 84 (127)
...||||+|.+ | ....+|.+.. ++.||.|||+|.|.+..|.-..|.|+|+|+|..+.|+|+|+.. |+..+.+
T Consensus 433 s~~DpyV~VeI~Gvp~D~~~~kT~v~n-Ng~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~ 510 (537)
T PLN02223 433 SKPDLYVRISIAGVPHDEKIMKTTVKN-NEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIE 510 (537)
T ss_pred CCCCeEEEEEEeeccCCcceeEEEeCC-CCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcC
Confidence 45689999998 3 2456777666 8999999999999998876557999999999888899999999 9999984
No 104
>KOG1028|consensus
Probab=99.30 E-value=8.1e-12 Score=93.61 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=66.3
Q ss_pred CeeeecCCCC--CCCcccEEEEEE---C--CeEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCCCc
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTM---G--SQEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~---g--~~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d~ 71 (127)
|++|++|+.+ .+.+||||++.+ + ..+.+|.+.+ ++.||+|||+|.|.+... .+-.|.|+|||++.+++++
T Consensus 304 v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~-~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~ 382 (421)
T KOG1028|consen 304 VIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKK-KTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSND 382 (421)
T ss_pred EEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeeccc-CCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccc
Confidence 5789999988 788899999998 2 2467888889 999999999999977643 3346899999999999999
Q ss_pred eeEEEe-ccc
Q psy7073 72 FLGKTK-RVK 80 (127)
Q Consensus 72 ~iG~~~-~l~ 80 (127)
+||.+. -..
T Consensus 383 ~iG~~~lG~~ 392 (421)
T KOG1028|consen 383 LIGRCILGSD 392 (421)
T ss_pred eeeEEEecCC
Confidence 999887 544
No 105
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.30 E-value=2e-11 Score=98.24 Aligned_cols=112 Identities=21% Similarity=0.320 Sum_probs=86.7
Q ss_pred CeeeecCCCC----CCCcccEEEEEEC-CeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEE
Q psy7073 1 MSSGYKLKAP----THKRQVFCQVTMG-SQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGK 75 (127)
Q Consensus 1 vi~a~~L~~~----~g~sdpyv~i~~g-~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 75 (127)
|.+|.+|+.. .+..|||+.+.+. ....+|++.+ ++.||+|||++.+.+.... ++|.++|||.+...+|+.+|+
T Consensus 442 I~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~-nt~nPvwNEt~Yi~lns~~-d~L~LslyD~n~~~sd~vvG~ 519 (1227)
T COG5038 442 IKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKK-NTLNPVWNETFYILLNSFT-DPLNLSLYDFNSFKSDKVVGS 519 (1227)
T ss_pred EeeccCcccccccccCCCCceEEEEeccccCCccceee-ccCCccccceEEEEecccC-CceeEEEEeccccCCcceeee
Confidence 3467777765 6889999999983 4556999999 9999999999988887654 699999999998889999999
Q ss_pred Ee-cccccccCCCCCccCCCceeeEEEecccccceEEEEeEEEEEecc
Q psy7073 76 TK-RVKGEAINPREPNLLMGSLCSKYVLYKFTVAEIIQRKFKLLRFDR 122 (127)
Q Consensus 76 ~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~i~~~~~~l~~~~~ 122 (127)
+. +|..+.+.... +. ....+....+..|+|.- ++++|..
T Consensus 520 ~~l~L~~L~~~~~~----~n-e~~e~~~~~k~vGrL~y---Dl~ffp~ 559 (1227)
T COG5038 520 TQLDLALLHQNPVK----KN-ELYEFLRNTKNVGRLTY---DLRFFPV 559 (1227)
T ss_pred EEechHHhhhcccc----cc-ceeeeeccCccceEEEE---eeeeecc
Confidence 99 99988853322 11 13445566777899966 6666653
No 106
>KOG0169|consensus
Probab=99.25 E-value=3.2e-11 Score=93.77 Aligned_cols=84 Identities=20% Similarity=0.322 Sum_probs=68.7
Q ss_pred CeeeecCCCC------CCCcccEEEEEE-C----CeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCC
Q psy7073 1 MSSGYKLKAP------THKRQVFCQVTM-G----SQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSP 69 (127)
Q Consensus 1 vi~a~~L~~~------~g~sdpyv~i~~-g----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~ 69 (127)
|++|.+..+. ...+||||.+.+ | ....+|++++.++-+|.|+|+|.|.+..|.-..|.+.|+|+|..++
T Consensus 622 I~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ 701 (746)
T KOG0169|consen 622 IISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGK 701 (746)
T ss_pred EEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCc
Confidence 4566644433 246799999988 3 2467899666589999999999999998865689999999999999
Q ss_pred CceeEEEe-ccccccc
Q psy7073 70 DEFLGKTK-RVKGEAI 84 (127)
Q Consensus 70 d~~iG~~~-~l~~~~~ 84 (127)
|||+|+.. |+..+.+
T Consensus 702 ddF~GQ~tlP~~~L~~ 717 (746)
T KOG0169|consen 702 DDFIGQTTLPVSELRQ 717 (746)
T ss_pred ccccceeeccHHHhhC
Confidence 99999999 9999984
No 107
>PLN02270 phospholipase D alpha
Probab=99.24 E-value=1e-10 Score=92.32 Aligned_cols=100 Identities=15% Similarity=0.191 Sum_probs=77.9
Q ss_pred CCcccEEEEEECC-eEEEeEEEeCCC-CCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-cccccccCCCC
Q psy7073 12 HKRQVFCQVTMGS-QEHTTSIISINT-LEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-RVKGEAINPRE 88 (127)
Q Consensus 12 g~sdpyv~i~~g~-~~~~T~~~~~~~-~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~~~~~~ 88 (127)
+.+|||+.+.+++ ...+|+++. +. .||.|+|.|.+.+.... ..+.++|.|.+.++ ..+||.+. |+.+++.
T Consensus 45 ~~~~~y~tv~~~~a~v~rtr~~~-~~~~~p~w~e~f~i~~ah~~-~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~---- 117 (808)
T PLN02270 45 GESQLYATIDLEKARVGRTRKIE-NEPKNPRWYESFHIYCAHMA-SNIIFTVKDDNPIG-ATLIGRAYIPVEEILD---- 117 (808)
T ss_pred CCCCceEEEEeCCcEEEEEeecC-CCCCCCccccceEEeeccCc-ceEEEEEecCCccC-ceEEEEEEEEHHHhcC----
Confidence 5679999999965 778999998 64 69999999999998876 58999999999886 55999999 9999994
Q ss_pred CccCCCceeeEEEeccc---c-cceEEEEeEEEEEeccc
Q psy7073 89 PNLLMGSLCSKYVLYKF---T-VAEIIQRKFKLLRFDRE 123 (127)
Q Consensus 89 ~~~~~~~~~~~~~l~~~---~-~G~i~~~~~~l~~~~~~ 123 (127)
...+..||.+-+. + .|...| ++.+||++-+
T Consensus 118 ----g~~i~~~~~~~~~~~~p~~~~~~~-~~~~~f~~~~ 151 (808)
T PLN02270 118 ----GEEVDRWVEILDNDKNPIHGGSKI-HVKLQYFEVT 151 (808)
T ss_pred ----CCccccEEeccCCCCCcCCCCCEE-EEEEEEEEcc
Confidence 2247788876522 2 344455 5577776643
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=99.22 E-value=2.8e-10 Score=87.97 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=61.1
Q ss_pred cccEEEEEE-C----CeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-ccccccc
Q psy7073 14 RQVFCQVTM-G----SQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-RVKGEAI 84 (127)
Q Consensus 14 sdpyv~i~~-g----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~~ 84 (127)
.||||++.+ | ..+.+|+++. ++.||.||++|.|.+..+.-..+.|.|||+|..+.++++|+.. |+..+.+
T Consensus 497 ~D~yV~V~i~G~p~D~~~~kTkvi~-nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~ 572 (599)
T PLN02952 497 PDFYTKMYIVGVPADNAKKKTKIIE-DNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRP 572 (599)
T ss_pred CCceEEEEEeccCCCCcceeeeecc-CCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcC
Confidence 489999998 3 3567999999 8899999999999888775457899999999888899999999 9999984
No 109
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.17 E-value=4e-10 Score=87.04 Aligned_cols=71 Identities=24% Similarity=0.333 Sum_probs=61.4
Q ss_pred CcccEEEEEE-C----CeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-ccccccc
Q psy7073 13 KRQVFCQVTM-G----SQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-RVKGEAI 84 (127)
Q Consensus 13 ~sdpyv~i~~-g----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~~ 84 (127)
..||||++.+ | ..+.+|++.. ++.||.||++|.|.+..+.-..|.|.|+|+|..+.|+|+|+.. |+..+.+
T Consensus 495 ~~DpyV~Vei~Gvp~D~~~~kT~v~~-n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~ 571 (598)
T PLN02230 495 PPDFFVRVGIAGAPVDEVMEKTKIEY-DTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQ 571 (598)
T ss_pred CCCceEEEEEEECCCCCcccceeccC-CCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhC
Confidence 4699999998 3 2456888888 8999999999999988775558999999999888899999999 9999984
No 110
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.13 E-value=1.1e-09 Score=84.43 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=61.9
Q ss_pred CCcccEEEEEE-C----CeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-ccccccc
Q psy7073 12 HKRQVFCQVTM-G----SQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-RVKGEAI 84 (127)
Q Consensus 12 g~sdpyv~i~~-g----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~~ 84 (127)
...||||++.+ | ..+.+|+++. ++.+|.|++.|.|.+..+.-..|.+.|||+|..+.|+|+|+.. |+..+.+
T Consensus 477 ~~~dpyV~Vei~G~p~D~~~~rTk~v~-nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~ 554 (581)
T PLN02222 477 SPPDFYTRVGIAGVPGDTVMKKTKTLE-DNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQ 554 (581)
T ss_pred CCCCeeEEEEEeccCCCcceeeeEecC-CCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhC
Confidence 34689999998 3 3567899999 8899999999999888775457999999999888899999999 9999884
No 111
>KOG1328|consensus
Probab=99.11 E-value=2.1e-11 Score=94.54 Aligned_cols=106 Identities=27% Similarity=0.374 Sum_probs=80.5
Q ss_pred eeecCCCC--CCCcccEEEEEE--CC-----------------------------eEEEeEEEeCCCCCCeEccEEEEEE
Q psy7073 3 SGYKLKAP--THKRQVFCQVTM--GS-----------------------------QEHTTSIISINTLEPKWNSSMQFLI 49 (127)
Q Consensus 3 ~a~~L~~~--~g~sdpyv~i~~--g~-----------------------------~~~~T~~~~~~~~~P~w~e~~~f~~ 49 (127)
.|++|-.. +|.||||+...+ +. -..-|++.+ +++||+|+|.|.|.+
T Consensus 122 ~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~-~TLnPkW~EkF~F~I 200 (1103)
T KOG1328|consen 122 EAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKK-KTLNPKWSEKFQFTI 200 (1103)
T ss_pred HhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccc-ccCCcchhhheeeeh
Confidence 46666555 899999988766 10 013477778 999999999999999
Q ss_pred ecCCCCeEEEEEEEcCCC---------------------------------CC---CceeEEEe-cccccccCCCCCccC
Q psy7073 50 KDVQEDVLCITVFDKGHY---------------------------------SP---DEFLGKTK-RVKGEAINPREPNLL 92 (127)
Q Consensus 50 ~~~~~~~l~v~v~d~~~~---------------------------------~~---d~~iG~~~-~l~~~~~~~~~~~~~ 92 (127)
.+...+.+.+-+||+|.- +- |||+|.+. |+.+|..
T Consensus 201 eDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~-------- 272 (1103)
T KOG1328|consen 201 EDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPP-------- 272 (1103)
T ss_pred hccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCc--------
Confidence 998878999999998731 12 68999999 9999984
Q ss_pred CCceeeEEEec-----ccccceEEEEeEEEEE
Q psy7073 93 MGSLCSKYVLY-----KFTVAEIIQRKFKLLR 119 (127)
Q Consensus 93 ~~~~~~~~~l~-----~~~~G~i~~~~~~l~~ 119 (127)
.| +..||.|. +..+|++++ +++|--
T Consensus 273 ~G-ld~WFkLepRS~~S~VqG~~~L-klwLsT 302 (1103)
T KOG1328|consen 273 DG-LDQWFKLEPRSDKSKVQGQVKL-KLWLST 302 (1103)
T ss_pred ch-HHHHhccCcccccccccceEEE-EEEEee
Confidence 11 56788776 334599999 777743
No 112
>PLN02228 Phosphoinositide phospholipase C
Probab=99.10 E-value=1.6e-09 Score=83.36 Aligned_cols=71 Identities=18% Similarity=0.311 Sum_probs=61.0
Q ss_pred CcccEEEEEE-C----CeEEEeEEEeCCCCCCeE-ccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-ccccccc
Q psy7073 13 KRQVFCQVTM-G----SQEHTTSIISINTLEPKW-NSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-RVKGEAI 84 (127)
Q Consensus 13 ~sdpyv~i~~-g----~~~~~T~~~~~~~~~P~w-~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~~ 84 (127)
..||||++.+ | ...++|+++. ++.+|.| ++.|.|.+..+.-..|.+.|+|+|..+.|+++|+.. |+..+.+
T Consensus 457 ~~DpyV~Vei~G~p~D~~~~rTk~~~-n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~ 534 (567)
T PLN02228 457 PPDFFVKIGIAGVPRDTVSYRTETAV-DQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKS 534 (567)
T ss_pred CCCcEEEEEEEecCCCCCcceeeccC-CCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhC
Confidence 3689999998 3 2467999998 8899999 999999988775457999999999888899999999 9999983
No 113
>KOG1031|consensus
Probab=99.07 E-value=4.7e-10 Score=85.80 Aligned_cols=117 Identities=20% Similarity=0.388 Sum_probs=88.3
Q ss_pred CeeeecCCCC---CCCcccEEEEEECCeEEEeEEEeCCCCCCeEcc-EEEEEEecC--CCCeEEEEEEEcCCCCCCceeE
Q psy7073 1 MSSGYKLKAP---THKRQVFCQVTMGSQEHTTSIISINTLEPKWNS-SMQFLIKDV--QEDVLCITVFDKGHYSPDEFLG 74 (127)
Q Consensus 1 vi~a~~L~~~---~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e-~~~f~~~~~--~~~~l~v~v~d~~~~~~d~~iG 74 (127)
|..|++|+-| ....|.||.+++++..++|.+.. +++||.||. .|.|.+.+. ++++|.|++.|+|+++.+|-||
T Consensus 9 i~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~-kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaig 87 (1169)
T KOG1031|consen 9 IKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFL-KSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIG 87 (1169)
T ss_pred EEeccCCcccccccccchheeEEEecccceehhhhh-hhcCCcccccceEEecChhhhccCCeeEEEecccccccccccc
Confidence 3568899888 34568999999999999999999 999999995 678888654 5678999999999999999999
Q ss_pred EEe-cccccccCCC--CCccCCC-ceeeEEEecccc---cceEEEEeEEEEEe
Q psy7073 75 KTK-RVKGEAINPR--EPNLLMG-SLCSKYVLYKFT---VAEIIQRKFKLLRF 120 (127)
Q Consensus 75 ~~~-~l~~~~~~~~--~~~~~~~-~~~~~~~l~~~~---~G~i~~~~~~l~~~ 120 (127)
.+. ++..+.-.+. ..+ -.| -+..||...+.- +|||.+ -+.+-.|
T Consensus 88 kv~i~idpl~~e~aaqavh-gkgtvisgw~pifdtihgirgeinv-ivkvdlf 138 (1169)
T KOG1031|consen 88 KVNIDIDPLCLEEAAQAVH-GKGTVISGWFPIFDTIHGIRGEINV-IVKVDLF 138 (1169)
T ss_pred eeeeccChHHHHhHHhhhc-CCceEEeeeeecceecccccceeEE-EEEEeeh
Confidence 999 9987762111 101 023 357788766432 588866 5554444
No 114
>KOG1264|consensus
Probab=99.05 E-value=1.7e-09 Score=85.05 Aligned_cols=84 Identities=23% Similarity=0.387 Sum_probs=69.2
Q ss_pred CeeeecCCCC-CCCcccEEEEEE-C----CeEEEeEEEeCCCCCCeEc-cEEEEEEecCCCCeEEEEEEEcCCCCCCcee
Q psy7073 1 MSSGYKLKAP-THKRQVFCQVTM-G----SQEHTTSIISINTLEPKWN-SSMQFLIKDVQEDVLCITVFDKGHYSPDEFL 73 (127)
Q Consensus 1 vi~a~~L~~~-~g~sdpyv~i~~-g----~~~~~T~~~~~~~~~P~w~-e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~i 73 (127)
|+.|+.|+.. .|-..|||.|.+ | ..+++|.++-.+++||+|| +.|+|.+.+|.-..|.+.|+|.|.++...||
T Consensus 1071 vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~Fi 1150 (1267)
T KOG1264|consen 1071 VLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFL 1150 (1267)
T ss_pred EeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCccee
Confidence 4678888866 455679999998 3 3455555554489999999 9999999998656899999999999888899
Q ss_pred EEEe-ccccccc
Q psy7073 74 GKTK-RVKGEAI 84 (127)
Q Consensus 74 G~~~-~l~~~~~ 84 (127)
|++. |+..|..
T Consensus 1151 aqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1151 AQATYPVKAIKS 1162 (1267)
T ss_pred eeeecchhhhhc
Confidence 9999 9998884
No 115
>KOG1328|consensus
Probab=99.04 E-value=1e-10 Score=90.83 Aligned_cols=83 Identities=16% Similarity=0.266 Sum_probs=71.5
Q ss_pred CeeeecCCCC--CCCcccEEEEEECC-------eEEEeEEEeCCCCCCeEccEEEEEEecCC----CCeEEEEEEEcCCC
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGS-------QEHTTSIISINTLEPKWNSSMQFLIKDVQ----EDVLCITVFDKGHY 67 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~-------~~~~T~~~~~~~~~P~w~e~~~f~~~~~~----~~~l~v~v~d~~~~ 67 (127)
|+.|+++.+. +|.|||||+|.++. ..++|+++. +++||+|+|.|.|.++... ..-+.++|+|+|-+
T Consensus 953 VlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~-rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L 1031 (1103)
T KOG1328|consen 953 VLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVS-RTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYL 1031 (1103)
T ss_pred hhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhh-ccccchhhhheeeecCccccccccceEEEEeecccee
Confidence 4678888877 89999999999963 368999999 9999999999999886542 23589999999999
Q ss_pred CCCceeEEEe-ccccccc
Q psy7073 68 SPDEFLGKTK-RVKGEAI 84 (127)
Q Consensus 68 ~~d~~iG~~~-~l~~~~~ 84 (127)
+.+||-|++. .|.++..
T Consensus 1032 ~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1032 RSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cccccchHHHHhhCCCCC
Confidence 9999999999 9998873
No 116
>KOG2059|consensus
Probab=98.85 E-value=9.3e-09 Score=79.76 Aligned_cols=107 Identities=14% Similarity=0.158 Sum_probs=76.6
Q ss_pred eeeecCCCC-CCCcccEEEEEECCe----EEEeEEEeCCCCCCeEccEEEEEEecC---------------CCCeEEEEE
Q psy7073 2 SSGYKLKAP-THKRQVFCQVTMGSQ----EHTTSIISINTLEPKWNSSMQFLIKDV---------------QEDVLCITV 61 (127)
Q Consensus 2 i~a~~L~~~-~g~sdpyv~i~~g~~----~~~T~~~~~~~~~P~w~e~~~f~~~~~---------------~~~~l~v~v 61 (127)
++++++.+. ++.+|||+++..+.. ..+|++.+ ++.+|.|+|.|.|.+... ....|.+++
T Consensus 138 L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~k-kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l 216 (800)
T KOG2059|consen 138 LKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKK-KTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL 216 (800)
T ss_pred hhhcccCceeCCCCCcceEEeecccchhhccccceee-eccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence 345566666 788999999998432 35899999 999999999999977554 223688999
Q ss_pred EE-cCCCCCCceeEEEe-cccccccCCCCCccCCCceeeEEEecccc----------cceEEEEeEEEE
Q psy7073 62 FD-KGHYSPDEFLGKTK-RVKGEAINPREPNLLMGSLCSKYVLYKFT----------VAEIIQRKFKLL 118 (127)
Q Consensus 62 ~d-~~~~~~d~~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~G~i~~~~~~l~ 118 (127)
|+ .+....++|+|++. ++....+... -..||.|...+ -|.+.+ ++.++
T Consensus 217 W~~~~~~~~~~FlGevrv~v~~~~~~s~--------p~~W~~Lqp~~~g~~~~~~~~lGslrl-~v~y~ 276 (800)
T KOG2059|consen 217 WNDLNLVINDVFLGEVRVPVDVLRQKSS--------PAAWYYLQPRPNGEKSSDGGDLGSLRL-NVTYT 276 (800)
T ss_pred ccchhhhhhhhhceeEEeehhhhhhccC--------ccceEEEecCCCcccCCCCCCccceee-eEEee
Confidence 99 56666799999999 9998874222 24555554221 167777 76654
No 117
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.76 E-value=4.7e-08 Score=59.76 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=57.3
Q ss_pred eeeecCCCC-----CCCcccEEEEEECC-eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEE
Q psy7073 2 SSGYKLKAP-----THKRQVFCQVTMGS-QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGK 75 (127)
Q Consensus 2 i~a~~L~~~-----~g~sdpyv~i~~g~-~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 75 (127)
..++|+... .+.++|||.++++. .+.+|++. .||.|||.|.|.+.. ...+.+.|||.... ..--||.
T Consensus 6 ~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s----rnd~WnE~F~i~Vdk--~nEiel~VyDk~~~-~~~Pi~l 78 (109)
T cd08689 6 TSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS----RNDRWNEDFEIPVEK--NNEEEVIVYDKGGD-QPVPVGL 78 (109)
T ss_pred EEEecCccccchhhccCCCcEEEEEECCEEEEeccCC----CCCcccceEEEEecC--CcEEEEEEEeCCCC-eecceee
Confidence 355666443 56779999999976 48888854 489999999999954 45899999998642 3446788
Q ss_pred Ee-ccccccc
Q psy7073 76 TK-RVKGEAI 84 (127)
Q Consensus 76 ~~-~l~~~~~ 84 (127)
.= .+++|..
T Consensus 79 lW~~~sdi~E 88 (109)
T cd08689 79 LWLRLSDIAE 88 (109)
T ss_pred ehhhHHHHHH
Confidence 77 7777763
No 118
>KOG1326|consensus
Probab=98.75 E-value=2.8e-09 Score=85.07 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=72.6
Q ss_pred CeeeecCCCC--CCCcccEEEEEECCeE--EEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEE
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGSQE--HTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKT 76 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~~~--~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~ 76 (127)
+++|.+|.+. +|.+|||+.+.+|+.. -++..+. +++||++++.|.+....+....++++|||+|..+.|+.||+.
T Consensus 619 vv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip-~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget 697 (1105)
T KOG1326|consen 619 VVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIP-NTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGET 697 (1105)
T ss_pred EEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCc-CCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhce
Confidence 4688899888 8999999999998755 5778899 999999999999988888777899999999999999999999
Q ss_pred e-cccccc
Q psy7073 77 K-RVKGEA 83 (127)
Q Consensus 77 ~-~l~~~~ 83 (127)
. +++.-.
T Consensus 698 ~iDLEnR~ 705 (1105)
T KOG1326|consen 698 TIDLENRW 705 (1105)
T ss_pred ehhhhhcc
Confidence 9 998443
No 119
>PLN02352 phospholipase D epsilon
Probab=98.56 E-value=4.8e-07 Score=71.72 Aligned_cols=91 Identities=16% Similarity=0.245 Sum_probs=68.3
Q ss_pred ccEEEEEECC-eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-cccccccCCCCCccC
Q psy7073 15 QVFCQVTMGS-QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-RVKGEAINPREPNLL 92 (127)
Q Consensus 15 dpyv~i~~g~-~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~~~~~~~~~~ 92 (127)
+||+.+.++. ...+| . +..||.|+|.|.+.+....+..+.++|.| ...+||.+. |+.+++. .
T Consensus 37 ~~y~tv~~~~~~v~rt---~-~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-----~~~~ig~~~~p~~~~~~-g------ 100 (758)
T PLN02352 37 ATYVTIKIGNKKVAKT---S-HEYDRVWNQTFQILCAHPLDSTITITLKT-----KCSILGRFHIQAHQIVT-E------ 100 (758)
T ss_pred CceEEEEeCCcEEecC---C-CCCCCccccceeEEeeeecCCcEEEEEec-----CCeEEEEEEEEHHHhhC-C------
Confidence 9999999965 67788 5 67799999999999988764479999988 267999999 9999994 1
Q ss_pred CCceeeEEEecc---cc-cceEEEEeEEEEEeccc
Q psy7073 93 MGSLCSKYVLYK---FT-VAEIIQRKFKLLRFDRE 123 (127)
Q Consensus 93 ~~~~~~~~~l~~---~~-~G~i~~~~~~l~~~~~~ 123 (127)
...+..|+.+-+ .+ .| ..+ ++.+||++.+
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~-~~~-~~~~~~~~~~ 133 (758)
T PLN02352 101 ASFINGFFPLIMENGKPNPE-LKL-RFMLWFRPAE 133 (758)
T ss_pred CcccceEEEcccCCCCCCCC-CEE-EEEEEEEEhh
Confidence 113778887652 22 34 555 5577777654
No 120
>PLN02964 phosphatidylserine decarboxylase
Probab=98.27 E-value=9.8e-07 Score=69.25 Aligned_cols=73 Identities=21% Similarity=0.338 Sum_probs=62.4
Q ss_pred CcccEE-EEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-cccccccCC
Q psy7073 13 KRQVFC-QVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-RVKGEAINP 86 (127)
Q Consensus 13 ~sdpyv-~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~~~~ 86 (127)
..|+|. .+.+|.+.++|...+ ++.||+||+...|.+.........+.|||.+.+++++++|.++ ++.++.+++
T Consensus 67 ~~~~~~~~~~~g~~~f~t~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 67 FKDKWLACVSFGEQTFRTETSD-STDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred cCCcEEEEEEecceeeeecccc-ccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHH
Confidence 458874 456699999999999 9999999999998887665456799999999999999999999 998887533
No 121
>KOG0905|consensus
Probab=98.26 E-value=5.2e-07 Score=73.72 Aligned_cols=82 Identities=15% Similarity=0.241 Sum_probs=65.4
Q ss_pred eeeecCCCC--CCCcccEEEEEEC-----CeEEEeEEEeCCCCCCeEccEEEEE---EecCCCCeEEEEEEEcCCCCCCc
Q psy7073 2 SSGYKLKAP--THKRQVFCQVTMG-----SQEHTTSIISINTLEPKWNSSMQFL---IKDVQEDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 2 i~a~~L~~~--~g~sdpyv~i~~g-----~~~~~T~~~~~~~~~P~w~e~~~f~---~~~~~~~~l~v~v~d~~~~~~d~ 71 (127)
..|++|.-. +...||||+.++- ..++||++++ ++.+|.|||.+.+. .....++.|.++||..+.+..+.
T Consensus 1531 ~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvr-kt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~ 1609 (1639)
T KOG0905|consen 1531 MHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVR-KTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENV 1609 (1639)
T ss_pred hhhcccccccCCCCCCcceeEEecCCchHhhhhhhcccc-ccCCCchhhheeecCCchhhhhhheeeeeeecccceeeee
Confidence 346677444 4567999999993 2478999999 99999999998875 22234568999999999988899
Q ss_pred eeEEEe-ccccccc
Q psy7073 72 FLGKTK-RVKGEAI 84 (127)
Q Consensus 72 ~iG~~~-~l~~~~~ 84 (127)
++|.+. +|.++..
T Consensus 1610 ~lg~v~i~L~~~~l 1623 (1639)
T KOG0905|consen 1610 FLGGVNIPLLKVDL 1623 (1639)
T ss_pred eeeeeecchhhcch
Confidence 999999 9998773
No 122
>KOG1326|consensus
Probab=98.25 E-value=2.8e-07 Score=74.02 Aligned_cols=74 Identities=23% Similarity=0.427 Sum_probs=60.9
Q ss_pred eeecCCCC--CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecC---------CCCeEEEEEEEcCCCCCCc
Q psy7073 3 SGYKLKAP--THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDV---------QEDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 3 ~a~~L~~~--~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~---------~~~~l~v~v~d~~~~~~d~ 71 (127)
+|++|... .+.+|||+.+.+..+...|.++. ++++|.|++...|.-... ....+.+++||.+..+.++
T Consensus 214 Qar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~-~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~e 292 (1105)
T KOG1326|consen 214 QARALGAPDKDDESDPDAAVEFCGQSKETEVVP-GTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINE 292 (1105)
T ss_pred HHHhhcCCCcccCCCchhhhhcccccceeEeec-CcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHH
Confidence 46666544 78899999999988999999999 999999999999842211 1135789999999999999
Q ss_pred eeEEEe
Q psy7073 72 FLGKTK 77 (127)
Q Consensus 72 ~iG~~~ 77 (127)
++|+..
T Consensus 293 f~gr~~ 298 (1105)
T KOG1326|consen 293 FKGRKK 298 (1105)
T ss_pred hhcccc
Confidence 999987
No 123
>KOG1327|consensus
Probab=98.07 E-value=7.2e-06 Score=62.68 Aligned_cols=80 Identities=16% Similarity=0.283 Sum_probs=61.4
Q ss_pred eeecCCCC--CCCcccEEEEEE--C--C--eEEEeEEEeCCCCCCeEccEEEEEEec----CCCCeEEEEEEEcCCCCCC
Q psy7073 3 SGYKLKAP--THKRQVFCQVTM--G--S--QEHTTSIISINTLEPKWNSSMQFLIKD----VQEDVLCITVFDKGHYSPD 70 (127)
Q Consensus 3 ~a~~L~~~--~g~sdpyv~i~~--g--~--~~~~T~~~~~~~~~P~w~e~~~f~~~~----~~~~~l~v~v~d~~~~~~d 70 (127)
.|++|-+. ++++|||..++. + . ..++|.+++ ++++|.|.+ |.+.... ..+.++.+.+||++..+++
T Consensus 144 ~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~-n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 144 RAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVK-NTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeecCcccccccCCcceEEEEecCCCceeeccccceec-cCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 45666554 899999988876 2 2 467999999 999999975 3333221 1246899999999999899
Q ss_pred ceeEEEe-ccccccc
Q psy7073 71 EFLGKTK-RVKGEAI 84 (127)
Q Consensus 71 ~~iG~~~-~l~~~~~ 84 (127)
++||.+. ++.++..
T Consensus 222 ~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQE 236 (529)
T ss_pred CceeEecccHHHhcc
Confidence 9999999 9998863
No 124
>KOG1013|consensus
Probab=98.00 E-value=5.4e-06 Score=59.79 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=59.0
Q ss_pred eeeecCCCC--CCCcccEEEEEEC-----CeEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCCCce
Q psy7073 2 SSGYKLKAP--THKRQVFCQVTMG-----SQEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSPDEF 72 (127)
Q Consensus 2 i~a~~L~~~--~g~sdpyv~i~~g-----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~d~~ 72 (127)
+....|..+ +|.+|||+..++. .-+.+|.+.+ ++.+|.+++.|.|.+... ....+.|+|||++..+..++
T Consensus 240 iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K-~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~ 318 (362)
T KOG1013|consen 240 IRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKK-KTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDS 318 (362)
T ss_pred EEeeeeeccccCCCCCccceeecCCCcchhhcccCcchh-ccCCccccccccccCCccchhcceEEEeecccCCCcCccC
Confidence 344566666 7899999999883 2467889899 999999999998876543 34579999999998777888
Q ss_pred eEEEe
Q psy7073 73 LGKTK 77 (127)
Q Consensus 73 iG~~~ 77 (127)
+|-+.
T Consensus 319 ~GG~~ 323 (362)
T KOG1013|consen 319 IGGSM 323 (362)
T ss_pred CCccc
Confidence 88765
No 125
>KOG1013|consensus
Probab=97.96 E-value=8.9e-07 Score=63.74 Aligned_cols=83 Identities=20% Similarity=0.262 Sum_probs=65.8
Q ss_pred CeeeecCCCC--CCCcccEEEEEECC-----eEEEeEEEeCCCCCCeEccEEEEEE--ecC-CCCeEEEEEEEcCCCCCC
Q psy7073 1 MSSGYKLKAP--THKRQVFCQVTMGS-----QEHTTSIISINTLEPKWNSSMQFLI--KDV-QEDVLCITVFDKGHYSPD 70 (127)
Q Consensus 1 vi~a~~L~~~--~g~sdpyv~i~~g~-----~~~~T~~~~~~~~~P~w~e~~~f~~--~~~-~~~~l~v~v~d~~~~~~d 70 (127)
|..|.+|+++ ++..|||++..++. .+.+|++.. ++.||.|++...+.. ... ....+.+.|.|.+.+..+
T Consensus 99 l~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~-n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~ 177 (362)
T KOG1013|consen 99 LDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTR-NTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHN 177 (362)
T ss_pred echhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhc-cCcCcceeccceecccccchhhhhhhheeeccCcccccc
Confidence 4568889999 88999999999842 357888888 999999999776642 222 234678889999988899
Q ss_pred ceeEEEe-ccccccc
Q psy7073 71 EFLGKTK-RVKGEAI 84 (127)
Q Consensus 71 ~~iG~~~-~l~~~~~ 84 (127)
+++|+.. ++..+..
T Consensus 178 ~sqGq~r~~lkKl~p 192 (362)
T KOG1013|consen 178 ESQGQSRVSLKKLKP 192 (362)
T ss_pred cCcccchhhhhccCh
Confidence 9999999 9887774
No 126
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.74 E-value=0.0001 Score=46.83 Aligned_cols=73 Identities=15% Similarity=0.305 Sum_probs=55.6
Q ss_pred ccEEEEEE----CCeEEEeEEEeCCCCCCeEccEEEEEEecC---------------CCCeEEEEEEEcCCCC-------
Q psy7073 15 QVFCQVTM----GSQEHTTSIISINTLEPKWNSSMQFLIKDV---------------QEDVLCITVFDKGHYS------- 68 (127)
Q Consensus 15 dpyv~i~~----g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~---------------~~~~l~v~v~d~~~~~------- 68 (127)
++|+.+.+ +....+|+++. ++.-|.|+-.+.|.+.-. +...+.++||+...-+
T Consensus 34 N~yv~i~lSFl~~~e~r~TrtVA-rSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~ 112 (143)
T cd08683 34 NSYVTIHLSFLPEKELRRTRTVA-RSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKI 112 (143)
T ss_pred ceEEEEEeccCCCCceeeccchh-hhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceecc
Confidence 68999986 35678999999 999999999999965411 1246899999976422
Q ss_pred ---CCceeEEEe-cccccccCCCC
Q psy7073 69 ---PDEFLGKTK-RVKGEAINPRE 88 (127)
Q Consensus 69 ---~d~~iG~~~-~l~~~~~~~~~ 88 (127)
.|-++|.+. |+.+++....+
T Consensus 113 ~~~~DilLG~v~IPl~~Ll~~rsG 136 (143)
T cd08683 113 ETSGDILLGTVKIPLRDLLTKRSG 136 (143)
T ss_pred CcCCcEEEEEEEeeHHHHhhcccC
Confidence 345899999 99999964443
No 127
>KOG2060|consensus
Probab=97.41 E-value=9.9e-05 Score=54.24 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=68.7
Q ss_pred CeeeecCCCC---CCCcccEEEEEE-C----CeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEE-cCCCCCCc
Q psy7073 1 MSSGYKLKAP---THKRQVFCQVTM-G----SQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFD-KGHYSPDE 71 (127)
Q Consensus 1 vi~a~~L~~~---~g~sdpyv~i~~-g----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d-~~~~~~d~ 71 (127)
|+.|++|... ...++||+++++ + ..+.+|+... ++..|.+-+...|.-..+. ..|.++||- +..+.++.
T Consensus 275 ii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~-kT~~plyqq~l~f~~sp~~-k~Lq~tv~gdygRmd~k~ 352 (405)
T KOG2060|consen 275 IIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSAR-KTLDPLYQQQLSFDQSPPG-KYLQGTVWGDYGRMDHKS 352 (405)
T ss_pred EEecccccccCCcccccCceeEEEEcCCCceeccccccccc-ccCchhhhhhhhhccCCCc-cEEEEEEeccccccchHH
Confidence 4678888655 346799999998 2 2456888888 8988877777777766654 589999994 66777788
Q ss_pred eeEEEe-cccccccCCCCCccCCCceeeEEEec
Q psy7073 72 FLGKTK-RVKGEAINPREPNLLMGSLCSKYVLY 103 (127)
Q Consensus 72 ~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~ 103 (127)
|+|.+. -+.++-- . +.+...|+.+.
T Consensus 353 fmg~aqi~l~eL~l-----s--~~~~igwyKlf 378 (405)
T KOG2060|consen 353 FMGVAQIMLDELNL-----S--SSPVIGWYKLF 378 (405)
T ss_pred HhhHHHHHhhhhcc-----c--cccceeeeecc
Confidence 999988 8887763 1 33566676665
No 128
>KOG1011|consensus
Probab=97.35 E-value=0.00071 Score=53.38 Aligned_cols=83 Identities=22% Similarity=0.305 Sum_probs=65.3
Q ss_pred CeeeecCCCC-CCCcccEEEEEE-C------CeEEEeEEEeCCCCCCeEccEEEEEEecC---CCCeEEEEEEEcCCCCC
Q psy7073 1 MSSGYKLKAP-THKRQVFCQVTM-G------SQEHTTSIISINTLEPKWNSSMQFLIKDV---QEDVLCITVFDKGHYSP 69 (127)
Q Consensus 1 vi~a~~L~~~-~g~sdpyv~i~~-g------~~~~~T~~~~~~~~~P~w~e~~~f~~~~~---~~~~l~v~v~d~~~~~~ 69 (127)
|+.|.+|+=. .|.-.||+.+.+ | ++++.|+... ++-.|.+||+|+|.+... ....|.+.|.|+--...
T Consensus 1131 vvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKs-nnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFARe 1209 (1283)
T KOG1011|consen 1131 VVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKS-NNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFARE 1209 (1283)
T ss_pred EEecccccchhccccccceEEEEecCcccchhhhccccccC-CCcCcccCceeEEEeccCCCCceEEEEEeehhheeecc
Confidence 3567777655 677789999998 3 2466788777 888999999999987654 23468999999876666
Q ss_pred CceeEEEe-ccccccc
Q psy7073 70 DEFLGKTK-RVKGEAI 84 (127)
Q Consensus 70 d~~iG~~~-~l~~~~~ 84 (127)
|..+|... +|.++..
T Consensus 1210 DRvvGl~VlqL~~va~ 1225 (1283)
T KOG1011|consen 1210 DRVVGLAVLQLRSVAD 1225 (1283)
T ss_pred cceeeeeeeehhhHhh
Confidence 88999999 9999984
No 129
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=97.16 E-value=0.0061 Score=40.23 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=56.8
Q ss_pred CCcccEEEEEE--CCe----EEEeEEEeCCCCCCeEccEEEEEEec---CCCCeEEEEEEEcCCCCCCceeEEEe-cccc
Q psy7073 12 HKRQVFCQVTM--GSQ----EHTTSIISINTLEPKWNSSMQFLIKD---VQEDVLCITVFDKGHYSPDEFLGKTK-RVKG 81 (127)
Q Consensus 12 g~sdpyv~i~~--g~~----~~~T~~~~~~~~~P~w~e~~~f~~~~---~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~ 81 (127)
..++.||.+.+ |.. ...|.... -+..+.|||.+.|.+.- |.+..|.|+||+.+..++...+|.+. +|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~-f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKP-FKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccC-CCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 45778888766 443 23555555 45678999999887542 23458999999987655667999999 9876
Q ss_pred cccCCCCCccCCCceeeEEEec
Q psy7073 82 EAINPREPNLLMGSLCSKYVLY 103 (127)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~ 103 (127)
-. . .|..|.....+...
T Consensus 107 ~~----g-~Lr~G~~~l~lw~~ 123 (159)
T cd08397 107 KD----G-TLRRGRQKLRVWPD 123 (159)
T ss_pred CC----C-cEecCCEEEEEEeC
Confidence 43 1 34456554444433
No 130
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.87 E-value=0.032 Score=36.70 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=70.0
Q ss_pred cccEEEEE--ECCeEEEeEEEeCCCCCCeEccEEEEEEecCC-------------CCeEEEEEEEcCCCCCCceeEEEe-
Q psy7073 14 RQVFCQVT--MGSQEHTTSIISINTLEPKWNSSMQFLIKDVQ-------------EDVLCITVFDKGHYSPDEFLGKTK- 77 (127)
Q Consensus 14 sdpyv~i~--~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~-------------~~~l~v~v~d~~~~~~d~~iG~~~- 77 (127)
.+.-+.+. ++++.++|+.+. .+.+|.+++.|.|.+.... .+++.+-|..-+..+...++|+-.
T Consensus 32 ~~s~~~l~l~f~~QRF~S~~Vp-~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~l 110 (156)
T PF15627_consen 32 VCSTFTLHLHFRGQRFRSKPVP-CACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFL 110 (156)
T ss_pred CceEEEEEEEecCceEecCCcc-cccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeecee
Confidence 33444444 478999999999 9999999999999775431 346888888777766668999988
Q ss_pred cccccccCCCCCccCCCceeeEEEec------ccccceEEEEeEEEEEecc
Q psy7073 78 RVKGEAINPREPNLLMGSLCSKYVLY------KFTVAEIIQRKFKLLRFDR 122 (127)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~l~------~~~~G~i~~~~~~l~~~~~ 122 (127)
+...++.... +.....+.+. .++.|-|.+ +++|.+.-.
T Consensus 111 dWR~vL~s~~------~~~~~~vEL~G~~~e~kv~~GiL~l-~lELlP~~~ 154 (156)
T PF15627_consen 111 DWRKVLCSGN------GSTSFTVELCGVGPESKVPVGILDL-RLELLPNLN 154 (156)
T ss_pred hHHHHhccCC------CccceeEEEeccCCCCccceeEEEE-EEEeecCCC
Confidence 8888884222 1112223333 245699999 888866543
No 131
>KOG3837|consensus
Probab=96.75 E-value=0.0035 Score=47.04 Aligned_cols=94 Identities=16% Similarity=0.258 Sum_probs=65.6
Q ss_pred ccEEEEEEC-----CeEEEeEEEeCCCCCCeEccEEEEEEecC---C--------CCeEEEEEEEcCCC-CCCceeEEEe
Q psy7073 15 QVFCQVTMG-----SQEHTTSIISINTLEPKWNSSMQFLIKDV---Q--------EDVLCITVFDKGHY-SPDEFLGKTK 77 (127)
Q Consensus 15 dpyv~i~~g-----~~~~~T~~~~~~~~~P~w~e~~~f~~~~~---~--------~~~l~v~v~d~~~~-~~d~~iG~~~ 77 (127)
|-|+++.+- .++.+|.+++ .+.+|.+++.|.+.+... . ...+++++|+...+ .+|.++|.+.
T Consensus 389 d~fvr~efpl~nD~~qk~kt~vik-~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 389 DQFVRLEFPLENDSRQKLKTDVIK-VTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HhhhcccccccccccccCccceee-CCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 567777661 3678999999 999999999999877651 1 23589999998754 5688999999
Q ss_pred -cccccccCCCCCccCCCceeeEEEecc---cccceEEEEeEEEE
Q psy7073 78 -RVKGEAINPREPNLLMGSLCSKYVLYK---FTVAEIIQRKFKLL 118 (127)
Q Consensus 78 -~l~~~~~~~~~~~~~~~~~~~~~~l~~---~~~G~i~~~~~~l~ 118 (127)
.+.-+-. . ..+..-+.+.+ ...|.|.+ ++.++
T Consensus 468 ikle~Len-~-------cei~e~~~l~DGRK~vGGkLev-KvRiR 503 (523)
T KOG3837|consen 468 IKLEILEN-M-------CEICEYLPLKDGRKAVGGKLEV-KVRIR 503 (523)
T ss_pred eeehhhhc-c-------cchhhceeccccccccCCeeEE-EEEEe
Confidence 8876552 2 22333444442 22488888 77764
No 132
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.14 E-value=0.11 Score=38.48 Aligned_cols=112 Identities=11% Similarity=0.205 Sum_probs=77.2
Q ss_pred CeeeecCCCCCCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEec-------CCCCeEEEEEEEcC-CCCCCce
Q psy7073 1 MSSGYKLKAPTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKD-------VQEDVLCITVFDKG-HYSPDEF 72 (127)
Q Consensus 1 vi~a~~L~~~~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~-------~~~~~l~v~v~d~~-~~~~d~~ 72 (127)
|++|+++.... .....+..++......|..+. .+..|.||..+...+.. .+..+|++++|..+ .-+..+.
T Consensus 6 i~egr~F~~~~-~~~~vv~a~~ng~~l~TDpv~-~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~ 83 (340)
T PF12416_consen 6 ILEGRNFPQRP-RHPIVVEAKFNGESLETDPVP-HTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRES 83 (340)
T ss_pred EecccCCCCCC-CccEEEEEEeCCceeeecCCC-CCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCccee
Confidence 46777776542 223567777788888999998 89999999988886642 23568999999988 4467789
Q ss_pred eEEEe-cccccc-cCCCCCccCCCceeeEEEeccc------ccceEEEEeEEEEE
Q psy7073 73 LGKTK-RVKGEA-INPREPNLLMGSLCSKYVLYKF------TVAEIIQRKFKLLR 119 (127)
Q Consensus 73 iG~~~-~l~~~~-~~~~~~~~~~~~~~~~~~l~~~------~~G~i~~~~~~l~~ 119 (127)
||.+- +|..+. ..... ...-.+|+.|-+. -..||.+ .+.+..
T Consensus 84 iGyv~LdLRsa~~~~~~~----~~~~~~W~~LL~~~~~y~~~KPEl~l-~l~ie~ 133 (340)
T PF12416_consen 84 IGYVVLDLRSAVVPQEKN----QKQKPKWYKLLSSSSKYKKHKPELLL-SLSIED 133 (340)
T ss_pred ccEEEEEccccccccccc----cccCCCeeEccccccccccCCccEEE-EEEEec
Confidence 99999 999882 11111 1245677766543 2367777 666543
No 133
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=96.03 E-value=0.0093 Score=35.58 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=45.1
Q ss_pred eEEEeEEEeCCCCCCeEccEEEEEEec--CCCCeEEEEEEEcCCCCCCceeEEEe-ccccccc
Q psy7073 25 QEHTTSIISINTLEPKWNSSMQFLIKD--VQEDVLCITVFDKGHYSPDEFLGKTK-RVKGEAI 84 (127)
Q Consensus 25 ~~~~T~~~~~~~~~P~w~e~~~f~~~~--~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~~ 84 (127)
...||+..+ +..+|.+.|+|.|.+.. ...-.|.++|+. ...+.+.||.+. .++++-.
T Consensus 35 v~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~s~ge 94 (103)
T cd08684 35 VHFKSSAKE-GSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLRTLST 94 (103)
T ss_pred ccccchhhc-CCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccceeeEEEeecccCCH
Confidence 456888888 99999999999997643 333468889988 345788999999 9988774
No 134
>KOG1265|consensus
Probab=95.93 E-value=0.031 Score=45.74 Aligned_cols=77 Identities=26% Similarity=0.432 Sum_probs=55.2
Q ss_pred CeeeecCCCCCCCcccEEEEEE-C------CeEEEeEEEeCCCCCCeEcc-EEEEE-EecCCCCeEEEEEEEcCCCCCCc
Q psy7073 1 MSSGYKLKAPTHKRQVFCQVTM-G------SQEHTTSIISINTLEPKWNS-SMQFL-IKDVQEDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 1 vi~a~~L~~~~g~sdpyv~i~~-g------~~~~~T~~~~~~~~~P~w~e-~~~f~-~~~~~~~~l~v~v~d~~~~~~d~ 71 (127)
||+|.-|.++ +...||.+.+ | ...++|+++..++.||+|++ .|.|. +..|.-..|.|.||+.+ ..
T Consensus 709 VISgqFLSdr--kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg----gK 782 (1189)
T KOG1265|consen 709 VISGQFLSDR--KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG----GK 782 (1189)
T ss_pred EEeeeecccc--ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC----Cc
Confidence 4566666655 2237999887 3 24678888876789999997 56774 43443347999999865 46
Q ss_pred eeEEEe-cccccc
Q psy7073 72 FLGKTK-RVKGEA 83 (127)
Q Consensus 72 ~iG~~~-~l~~~~ 83 (127)
+||+-- |+..+.
T Consensus 783 ~ig~RIlpvd~l~ 795 (1189)
T KOG1265|consen 783 FIGQRILPVDGLN 795 (1189)
T ss_pred eeeeeccchhccc
Confidence 999988 888666
No 135
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.81 E-value=0.13 Score=34.43 Aligned_cols=80 Identities=23% Similarity=0.338 Sum_probs=49.1
Q ss_pred eeecCCCCCCCcccEEEEEE--CCe----EEEeEEEeCCCCCCeEccEEEEEEe--c-CCCCeEEEEEEEcCCCC-----
Q psy7073 3 SGYKLKAPTHKRQVFCQVTM--GSQ----EHTTSIISINTLEPKWNSSMQFLIK--D-VQEDVLCITVFDKGHYS----- 68 (127)
Q Consensus 3 ~a~~L~~~~g~sdpyv~i~~--g~~----~~~T~~~~~~~~~P~w~e~~~f~~~--~-~~~~~l~v~v~d~~~~~----- 68 (127)
.+.++.-.....+.|+.+.+ |.+ ...|+.+. .+..+.|||.+.|.+. + |.+..|.|+||+.....
T Consensus 16 ~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~ 94 (173)
T cd08693 16 KISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRS 94 (173)
T ss_pred EeccCccCCCCceEEEEEEEEECCEEccCceEccccC-CCCccccceeEEcccchhcCChhHeEEEEEEEeccccccccc
Confidence 33444322233456766554 543 23555555 4567999999999653 2 23457999999875321
Q ss_pred -----------CCceeEEEe-cccccc
Q psy7073 69 -----------PDEFLGKTK-RVKGEA 83 (127)
Q Consensus 69 -----------~d~~iG~~~-~l~~~~ 83 (127)
.+..||-+. +|-+..
T Consensus 95 ~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 95 RKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred ccccccccccCcceEEEEEeEEEEccc
Confidence 135789988 887644
No 136
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.51 E-value=0.14 Score=33.47 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=46.0
Q ss_pred CcccEEEEEE--CCe----EEEeEEEeCCCCCCeEccEEEEEEe---cCCCCeEEEEEEEcCCCC--CCceeEEEe-ccc
Q psy7073 13 KRQVFCQVTM--GSQ----EHTTSIISINTLEPKWNSSMQFLIK---DVQEDVLCITVFDKGHYS--PDEFLGKTK-RVK 80 (127)
Q Consensus 13 ~sdpyv~i~~--g~~----~~~T~~~~~~~~~P~w~e~~~f~~~---~~~~~~l~v~v~d~~~~~--~d~~iG~~~-~l~ 80 (127)
..+-|+.+.+ |.+ ...|.... .+.++.|||.+.|.+. -|.+..|.+++|+.+..+ .+..||.+. +|-
T Consensus 27 ~~~l~V~~~l~~g~~~l~~~~~t~~~~-~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lF 105 (156)
T cd08380 27 DLKLYVRVQLYHGGEPLCPPQSTKKVP-FSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLF 105 (156)
T ss_pred ceeEEEEEEEEECCEEccCceeccCCc-CCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeE
Confidence 3455666654 543 23444343 3368999999988643 233457999999977543 457999999 988
Q ss_pred ccc
Q psy7073 81 GEA 83 (127)
Q Consensus 81 ~~~ 83 (127)
+..
T Consensus 106 d~~ 108 (156)
T cd08380 106 DYK 108 (156)
T ss_pred ccc
Confidence 754
No 137
>KOG1327|consensus
Probab=95.44 E-value=0.054 Score=42.07 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=45.7
Q ss_pred EEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCC----CCCCceeEEEe-ccccccc
Q psy7073 26 EHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGH----YSPDEFLGKTK-RVKGEAI 84 (127)
Q Consensus 26 ~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~----~~~d~~iG~~~-~l~~~~~ 84 (127)
..+|.++. +.++|.|-+.|.........+.+.+.++|-+. +..++|+|++. .+..+..
T Consensus 42 ~~rte~i~-~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs 104 (529)
T KOG1327|consen 42 VGRTEVIR-NVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVS 104 (529)
T ss_pred ccceeeee-ccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhh
Confidence 35899999 99999999888765544334578999998764 34568999999 9998884
No 138
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=95.20 E-value=0.35 Score=29.03 Aligned_cols=84 Identities=11% Similarity=0.121 Sum_probs=55.3
Q ss_pred CCcccEEEEEECC-eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-cccccccCCCCC
Q psy7073 12 HKRQVFCQVTMGS-QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-RVKGEAINPREP 89 (127)
Q Consensus 12 g~sdpyv~i~~g~-~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~~~~~~~ 89 (127)
|-++..+.+.+.+ .+..|.-.. ..+..|++.|.+.+.. ++.|.|.||-.|- ..+-|... .|++...
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~--~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~~~----- 74 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKP--KSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDERH----- 74 (98)
T ss_pred cccceEEEEEEcCeEEeeccccc--cccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhhcc-----
Confidence 3356677788865 556666555 3488999999999887 4689999987653 33455555 7777431
Q ss_pred ccCCCceeeEEEecccccceEEEEeEEE
Q psy7073 90 NLLMGSLCSKYVLYKFTVAEIIQRKFKL 117 (127)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~G~i~~~~~~l 117 (127)
...+.-.+.|.+.. .+.+
T Consensus 75 ---------~~~~~lepqg~l~~-ev~f 92 (98)
T cd08687 75 ---------EVQLDMEPQLCLVA-ELTF 92 (98)
T ss_pred ---------cceeccccccEEEE-EEEe
Confidence 13334556777776 5554
No 139
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=95.20 E-value=0.22 Score=32.00 Aligned_cols=56 Identities=25% Similarity=0.396 Sum_probs=39.5
Q ss_pred EEeEEEeCCC-CCCeEccEEEEEEe--c-CCCCeEEEEEEEcCCCCCC----ceeEEEe-cccccc
Q psy7073 27 HTTSIISINT-LEPKWNSSMQFLIK--D-VQEDVLCITVFDKGHYSPD----EFLGKTK-RVKGEA 83 (127)
Q Consensus 27 ~~T~~~~~~~-~~P~w~e~~~f~~~--~-~~~~~l~v~v~d~~~~~~d----~~iG~~~-~l~~~~ 83 (127)
..|+... -+ ..+.|+|.+.|.+. + |.+..|.++||..+..... ..||-+. +|-+..
T Consensus 22 ~~T~~~~-~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~ 86 (142)
T PF00792_consen 22 QSTSYVP-FSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR 86 (142)
T ss_dssp EE-S-EE-SS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT
T ss_pred eeccccc-cccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC
Confidence 3676677 55 79999999999754 2 3455899999998765444 6899999 988664
No 140
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.16 E-value=0.42 Score=31.54 Aligned_cols=69 Identities=14% Similarity=0.288 Sum_probs=45.4
Q ss_pred CcccEEEEEE--CCeE----EEeEEEeCCCCCCeEccEEEEEEe--c-CCCCeEEEEEEEcCCCC----CCceeEEEe-c
Q psy7073 13 KRQVFCQVTM--GSQE----HTTSIISINTLEPKWNSSMQFLIK--D-VQEDVLCITVFDKGHYS----PDEFLGKTK-R 78 (127)
Q Consensus 13 ~sdpyv~i~~--g~~~----~~T~~~~~~~~~P~w~e~~~f~~~--~-~~~~~l~v~v~d~~~~~----~d~~iG~~~-~ 78 (127)
.++.|+.+.+ |.+. ..|+.+. . .++.|||.+.|.+. + |.+..|.|+||+...-. ....+|.+. +
T Consensus 25 ~~~l~V~v~l~~g~~~L~~pv~T~~v~-~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~ 102 (158)
T cd08398 25 IDKIYVRTGIYHGGEPLCDNVNTQRVP-C-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNIN 102 (158)
T ss_pred cCeEEEEEEEEECCEEccCeeEecccC-C-CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEE
Confidence 4577887765 5432 2455444 3 57999999988654 2 23458999999975421 124699999 8
Q ss_pred ccccc
Q psy7073 79 VKGEA 83 (127)
Q Consensus 79 l~~~~ 83 (127)
|-+-.
T Consensus 103 LFd~~ 107 (158)
T cd08398 103 LFDYT 107 (158)
T ss_pred EECCC
Confidence 88744
No 141
>KOG1452|consensus
Probab=95.01 E-value=0.055 Score=39.54 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=60.9
Q ss_pred eeeecCCCC---CC-CcccEEEEEECC-eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCce--eE
Q psy7073 2 SSGYKLKAP---TH-KRQVFCQVTMGS-QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEF--LG 74 (127)
Q Consensus 2 i~a~~L~~~---~g-~sdpyv~i~~g~-~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~--iG 74 (127)
++|++|+-. .| .-+-|+++.... ...+|.+-. ....-.|.|.|...+.. ...+.+-||.|+.-.++++ .|
T Consensus 58 ~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs-~~~~f~w~e~F~~Dvv~--~~vl~~lvySW~pq~RHKLC~~g 134 (442)
T KOG1452|consen 58 YNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRS-SGPGFAWAEDFKHDVVN--IEVLHYLVYSWPPQRRHKLCHLG 134 (442)
T ss_pred ecccccccChhccCceeeeeeeeeecccCcccccccc-CCCCccchhhceeeccc--ceeeeEEEeecCchhhccccccc
Confidence 456777644 23 447788888753 566777766 66777888888877665 3578888998876544543 44
Q ss_pred EEecccccccCCCCCccCCCceeeEEEecccccceEEEEeEE
Q psy7073 75 KTKRVKGEAINPREPNLLMGSLCSKYVLYKFTVAEIIQRKFK 116 (127)
Q Consensus 75 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~i~~~~~~ 116 (127)
-.+ +..+..+.+ .+.+-++-.+.|++.+ ++.
T Consensus 135 ~l~-~~~v~rqsp---------d~~~Al~lePrgq~~~-r~~ 165 (442)
T KOG1452|consen 135 LLE-AFVVDRQSP---------DRVVALYLEPRGQPPL-RLP 165 (442)
T ss_pred hhh-hhhhhhcCC---------cceeeeecccCCCCce-ecc
Confidence 222 222221111 2335555666777777 443
No 142
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=94.22 E-value=0.51 Score=31.38 Aligned_cols=83 Identities=19% Similarity=0.163 Sum_probs=49.9
Q ss_pred CcccEEEEEE--CCeE----EEeEEEe---CCCCCCeEccEEEEEEe---cCCCCeEEEEEEEcCCCC---------CCc
Q psy7073 13 KRQVFCQVTM--GSQE----HTTSIIS---INTLEPKWNSSMQFLIK---DVQEDVLCITVFDKGHYS---------PDE 71 (127)
Q Consensus 13 ~sdpyv~i~~--g~~~----~~T~~~~---~~~~~P~w~e~~~f~~~---~~~~~~l~v~v~d~~~~~---------~d~ 71 (127)
..+-|+.+.+ |.+. ..|+... .-...+.|||.+.|.+. -|.+..|.|++|+....+ .+.
T Consensus 28 ~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~ 107 (171)
T cd04012 28 FEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPE 107 (171)
T ss_pred cccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccce
Confidence 4677777765 5432 2333211 01225679999888653 233457999999976543 346
Q ss_pred eeEEEe-cccccccCCCCCccCCCceeeEE
Q psy7073 72 FLGKTK-RVKGEAINPREPNLLMGSLCSKY 100 (127)
Q Consensus 72 ~iG~~~-~l~~~~~~~~~~~~~~~~~~~~~ 100 (127)
.||-+. +|-+... .|..|.....+
T Consensus 108 ~lG~~~~~LFd~~~-----~L~~G~~~L~l 132 (171)
T cd04012 108 ELGWVSLPLFDFRG-----VLRQGSLLLGL 132 (171)
T ss_pred EEEEEeEeeEcchh-----hhccCCEEEEe
Confidence 899999 9887542 33456544443
No 143
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=92.76 E-value=1.6 Score=27.69 Aligned_cols=102 Identities=21% Similarity=0.269 Sum_probs=64.8
Q ss_pred cEEEEEECCe---EEEeEEEeCCCCCCeEccEEEEEEecC--------CCCeEEEEEEEcCCCCCCceeEEEe-cccccc
Q psy7073 16 VFCQVTMGSQ---EHTTSIISINTLEPKWNSSMQFLIKDV--------QEDVLCITVFDKGHYSPDEFLGKTK-RVKGEA 83 (127)
Q Consensus 16 pyv~i~~g~~---~~~T~~~~~~~~~P~w~e~~~f~~~~~--------~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~ 83 (127)
.|++...|.. ...|......+..-.|++.|.+.+.-. ....+.+.|+....-++...+|.+. +|.+..
T Consensus 26 v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~ 105 (143)
T PF10358_consen 26 VFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYA 105 (143)
T ss_pred EEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhh
Confidence 4566656654 345555442455689999998854321 2236889998874333336999999 999999
Q ss_pred cCCCCCccCCCceeeEEEeccc--ccceEEEEeEEEEEecccC
Q psy7073 84 INPREPNLLMGSLCSKYVLYKF--TVAEIIQRKFKLLRFDREN 124 (127)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~--~~G~i~~~~~~l~~~~~~~ 124 (127)
... ..+....+.+... ....|.+ .+.+...+...
T Consensus 106 ~~~------~~~~~~~~~l~~~~~~~a~L~i-si~~~~~~~~~ 141 (143)
T PF10358_consen 106 NED------EEPITVRLLLKKCKKSNATLSI-SISLSELREDP 141 (143)
T ss_pred CcC------CCcEEEEEeCccCCCCCcEEEE-EEEEEECccCC
Confidence 421 2346667777654 3467777 77776665543
No 144
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=91.71 E-value=2.7 Score=27.89 Aligned_cols=68 Identities=12% Similarity=0.259 Sum_probs=48.1
Q ss_pred cccEEEEEEC-CeEEEeEEEeC-CCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-cccccc
Q psy7073 14 RQVFCQVTMG-SQEHTTSIISI-NTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-RVKGEA 83 (127)
Q Consensus 14 sdpyv~i~~g-~~~~~T~~~~~-~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~ 83 (127)
..-|+++.+. +.+.+|+.... ....-.+++.|.+.+.... +.|.++||.... ..+..|+++. |+-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P-esi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP-ESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCC-CEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 3467888885 45667766551 2223456788888776643 589999999887 5688999999 987655
No 145
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=90.26 E-value=1.3 Score=26.76 Aligned_cols=51 Identities=25% Similarity=0.470 Sum_probs=33.7
Q ss_pred cccEEEEEE--CCeE----EEeEEEeCCCCCCeEccEEEEEEe---cCCCCeEEEEEEEcC
Q psy7073 14 RQVFCQVTM--GSQE----HTTSIISINTLEPKWNSSMQFLIK---DVQEDVLCITVFDKG 65 (127)
Q Consensus 14 sdpyv~i~~--g~~~----~~T~~~~~~~~~P~w~e~~~f~~~---~~~~~~l~v~v~d~~ 65 (127)
++-|+.+.+ |+.. ..|+... -...+.|||.+.|.+. -|.+..|.+++|+..
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~-~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKP-FFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccC-CCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 467887765 5432 3455444 4556899999888643 223457999999864
No 146
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=89.21 E-value=2 Score=28.78 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=32.1
Q ss_pred EEEeEEEeCCCCCCeEccEEEEEEecCC--CCeEEEEEEEcCCCC-CC--ceeEEEe-cccc
Q psy7073 26 EHTTSIISINTLEPKWNSSMQFLIKDVQ--EDVLCITVFDKGHYS-PD--EFLGKTK-RVKG 81 (127)
Q Consensus 26 ~~~T~~~~~~~~~P~w~e~~~f~~~~~~--~~~l~v~v~d~~~~~-~d--~~iG~~~-~l~~ 81 (127)
.+.|.+.. .+.+|.|+|++.+.+.... ...|.+++++...-. ++ ..+|-+. ||-+
T Consensus 60 ~~~S~v~y-h~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYY-HNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----T-T-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEe-cCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 45677777 7789999999999887553 346889999865422 12 6899999 9887
No 147
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=88.86 E-value=5.4 Score=26.88 Aligned_cols=49 Identities=31% Similarity=0.434 Sum_probs=32.0
Q ss_pred cEEEEEE--CCeE---EEeEEEeCCCCCCeEccEEEEEEe--c-CCCCeEEEEEEEcC
Q psy7073 16 VFCQVTM--GSQE---HTTSIISINTLEPKWNSSMQFLIK--D-VQEDVLCITVFDKG 65 (127)
Q Consensus 16 pyv~i~~--g~~~---~~T~~~~~~~~~P~w~e~~~f~~~--~-~~~~~l~v~v~d~~ 65 (127)
.||.+.+ |... .+|.... -+.++.|||.+.|.+. + |.+..|.++||+..
T Consensus 32 l~V~~~Ly~g~~~l~~~~T~~~~-~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 32 VFVEANIQHGQQVLCQRRTSPKP-FTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred EEEEEEEEECCeecccceeeccC-CCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4555544 5432 2556555 5667999999888653 2 23458999999963
No 148
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=87.02 E-value=4.1 Score=27.77 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=38.1
Q ss_pred EEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCC-CC-ceeEEEe-ccc
Q psy7073 26 EHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYS-PD-EFLGKTK-RVK 80 (127)
Q Consensus 26 ~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~-~d-~~iG~~~-~l~ 80 (127)
.++|-+.. .+.+|.|+|++.+.++.. ....|.+++++...-. ++ ..+|-+- ||-
T Consensus 54 e~~S~V~y-H~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLY-HNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEE-cCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 57888888 888999999998877643 3447888887754321 11 4678777 764
No 149
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=86.92 E-value=5.3 Score=24.58 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=43.8
Q ss_pred EEEEEECC-eEEEeEEEeCCCCCCeEccEEEEEEecC-------CCCeEEEEEEEcCCCCCCceeEEEe-cccccccCCC
Q psy7073 17 FCQVTMGS-QEHTTSIISINTLEPKWNSSMQFLIKDV-------QEDVLCITVFDKGHYSPDEFLGKTK-RVKGEAINPR 87 (127)
Q Consensus 17 yv~i~~g~-~~~~T~~~~~~~~~P~w~e~~~f~~~~~-------~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~~~~~ 87 (127)
||.+.+-. +.+.|.++. +.+|.++.+..|.+... ....+.|+++.... ...+.+|.+. ++.+++....
T Consensus 2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S
T ss_pred EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCC
Confidence 44444433 566778777 67999998888877643 23478999988653 2357899999 9999995222
Q ss_pred CCccCCCceeeEEEeccc---ccceEEEEeEEE
Q psy7073 88 EPNLLMGSLCSKYVLYKF---TVAEIIQRKFKL 117 (127)
Q Consensus 88 ~~~~~~~~~~~~~~l~~~---~~G~i~~~~~~l 117 (127)
. .+.....+.+. .-|.|.. .+.|
T Consensus 79 ~------~i~~~~~l~g~~~~~~g~l~y-~~rl 104 (107)
T PF11618_consen 79 E------RIHGSATLVGVSGEDFGTLEY-WIRL 104 (107)
T ss_dssp --------EEEEEEE-BSSS-TSEEEEE-EEEE
T ss_pred c------eEEEEEEEeccCCCeEEEEEE-EEEe
Confidence 1 24444444332 3377755 4444
No 150
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=83.00 E-value=7.7 Score=26.60 Aligned_cols=55 Identities=16% Similarity=0.208 Sum_probs=38.1
Q ss_pred eEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCC-CCC---ceeEEEe-ccc
Q psy7073 25 QEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHY-SPD---EFLGKTK-RVK 80 (127)
Q Consensus 25 ~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~-~~d---~~iG~~~-~l~ 80 (127)
..++|-+.. .+.+|.|+|++.+.+... .+..|.+++++...- .+| ..+|-+- ||-
T Consensus 53 se~~S~V~Y-h~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYY-QVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEe-ecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 357888878 788999999998876543 345788998775421 122 4577777 764
No 151
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=79.77 E-value=13 Score=24.76 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=37.2
Q ss_pred EEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCC-----CCCceeEEEe-cccc
Q psy7073 27 HTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHY-----SPDEFLGKTK-RVKG 81 (127)
Q Consensus 27 ~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~-----~~d~~iG~~~-~l~~ 81 (127)
.-+.++. .+.+|.|++++.+.++.. ....|.+++++-..- .....+|-+. ||-+
T Consensus 54 ~~~sv~~-~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVY-YHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEE-cCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3445555 458999999998887543 234688999886532 2346789888 8775
No 152
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=75.39 E-value=22 Score=23.99 Aligned_cols=55 Identities=13% Similarity=0.173 Sum_probs=37.9
Q ss_pred eEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCCCCC------CceeEEEe-ccc
Q psy7073 25 QEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGHYSP------DEFLGKTK-RVK 80 (127)
Q Consensus 25 ~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~~~~------d~~iG~~~-~l~ 80 (127)
....|.+.. .+.+|.|++++.+.+... ....|.+++++-+.-.+ ...+|-+- ||-
T Consensus 54 ~~~~S~V~y-Hnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTY-HNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEE-eCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 356788888 889999999998877644 23468888887542111 24578777 664
No 153
>KOG2419|consensus
Probab=72.55 E-value=0.48 Score=37.98 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=38.4
Q ss_pred CcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCC-CCeEEEEEEEcCCCCCCc
Q psy7073 13 KRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQ-EDVLCITVFDKGHYSPDE 71 (127)
Q Consensus 13 ~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~-~~~l~v~v~d~~~~~~d~ 71 (127)
..++++...++.+.++|+... .+.+|+||+. .+...+.+ ++.|...+-+++.+..+|
T Consensus 304 ~~~~~~itsf~~~~frt~~~~-~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~~~lnd 361 (975)
T KOG2419|consen 304 KDKWLAITSFGEQTFRTEISD-DTEKPIYNED-EREDSDFQSNRYLGNKIVGYCELDLND 361 (975)
T ss_pred CCCchheeecchhhhhhhhhc-cccccccccc-ccccccchhhHHHhhhccccccccccc
Confidence 457888899999999999999 9999999997 55443322 223444454444443333
No 154
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=72.12 E-value=12 Score=21.41 Aligned_cols=26 Identities=19% Similarity=0.511 Sum_probs=21.1
Q ss_pred CeEEEEEEEcCCCCCCceeEEEe-ccc
Q psy7073 55 DVLCITVFDKGHYSPDEFLGKTK-RVK 80 (127)
Q Consensus 55 ~~l~v~v~d~~~~~~d~~iG~~~-~l~ 80 (127)
....|++|+.+.+..|+++++.. +-.
T Consensus 12 ~~~~V~L~e~d~~~~Ddll~~~~Td~~ 38 (80)
T PF01060_consen 12 KNVKVKLWEDDYFDPDDLLDETKTDSD 38 (80)
T ss_pred CCCEEEEEECCCCCCCceeEEEEECCC
Confidence 35679999999878899999887 544
No 155
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=65.09 E-value=37 Score=22.40 Aligned_cols=65 Identities=18% Similarity=0.315 Sum_probs=41.9
Q ss_pred CcccEEEEEE--C--------Ce-EEEeEEEeCC----CCCCeEccEEEEEEe--cCCC-CeEEEEEEEcCCCCCCceeE
Q psy7073 13 KRQVFCQVTM--G--------SQ-EHTTSIISIN----TLEPKWNSSMQFLIK--DVQE-DVLCITVFDKGHYSPDEFLG 74 (127)
Q Consensus 13 ~sdpyv~i~~--g--------~~-~~~T~~~~~~----~~~P~w~e~~~f~~~--~~~~-~~l~v~v~d~~~~~~d~~iG 74 (127)
..+.||+..+ | .. ...|.+.... +..-.||..|.+... .+.. ..|.++||..|..+++.+.|
T Consensus 16 ~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~G 95 (168)
T PF07162_consen 16 EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEG 95 (168)
T ss_pred CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeE
Confidence 4467888776 2 23 4556555411 334678887766544 3322 47999999999999888776
Q ss_pred EEe
Q psy7073 75 KTK 77 (127)
Q Consensus 75 ~~~ 77 (127)
-..
T Consensus 96 YG~ 98 (168)
T PF07162_consen 96 YGF 98 (168)
T ss_pred EeE
Confidence 544
No 156
>KOG0694|consensus
Probab=64.36 E-value=2 Score=34.71 Aligned_cols=62 Identities=11% Similarity=-0.011 Sum_probs=39.6
Q ss_pred CcccEEEEEECC-eEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe
Q psy7073 13 KRQVFCQVTMGS-QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK 77 (127)
Q Consensus 13 ~sdpyv~i~~g~-~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~ 77 (127)
.-+||+.+.+.. +...+.+.+ .+..|.|+++|...+... ..+.|.|+.......+++..++.
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~-~~~~~~~~~~F~~~v~~~--~~~~i~v~~~~~~~~~~~~a~~~ 89 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKV-ELRIPELRETFHVEVVAG--GAKNIIVLLKSPDPKALSEAQLS 89 (694)
T ss_pred hhhhhheeccceeecccccCCC-CCCCchhhhheeeeeecC--CceEEEEEecCCcchhhHHHhHH
Confidence 347887777642 222333345 788999999999986653 46888888865444444333333
No 157
>KOG1329|consensus
Probab=62.58 E-value=4.9 Score=33.48 Aligned_cols=69 Identities=12% Similarity=0.088 Sum_probs=54.3
Q ss_pred cccEEEEEECC-eEEEeEEEeCCC-CCCeEccEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-ccccccc
Q psy7073 14 RQVFCQVTMGS-QEHTTSIISINT-LEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-RVKGEAI 84 (127)
Q Consensus 14 sdpyv~i~~g~-~~~~T~~~~~~~-~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~~~~~ 84 (127)
.++|+.+.+.. ...+|..+. +. .+|.|.+.|........ ..+.+.+-+.+..+....+|.+. ++..+..
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~-~f~e~s~~~f~~~~~~~h~~-g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~ 209 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIY-EFLENSRWSFSFDIGFAHKA-GYVIFRVKGARVPGWSKRWGRVKISFLQYCS 209 (887)
T ss_pred ccchheeeechhhhhchhhhh-cccccchhhhhccccccccc-cEEEEeecCCccccceeEEEEeccchhhhhc
Confidence 58999998854 455677666 55 68999998887777665 47888888887777678999999 9998885
No 158
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=60.63 E-value=50 Score=22.42 Aligned_cols=56 Identities=7% Similarity=0.166 Sum_probs=38.6
Q ss_pred eEEEeEEEeCCCCCCeEccEEEEEEecC--CCCeEEEEEEEcCC--CC-------CCceeEEEe-cccc
Q psy7073 25 QEHTTSIISINTLEPKWNSSMQFLIKDV--QEDVLCITVFDKGH--YS-------PDEFLGKTK-RVKG 81 (127)
Q Consensus 25 ~~~~T~~~~~~~~~P~w~e~~~f~~~~~--~~~~l~v~v~d~~~--~~-------~d~~iG~~~-~l~~ 81 (127)
....|.+.. .+.+|.|.+++.+.+... ..-.|.+++++-+- -. ....+|-+- ||-.
T Consensus 56 ~~~~s~V~y-h~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLH-HNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEE-cCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 356788888 889999999988876543 23468889988641 11 124578777 7654
No 159
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=60.48 E-value=73 Score=24.21 Aligned_cols=90 Identities=11% Similarity=0.220 Sum_probs=56.2
Q ss_pred ccEEEEEECCeEEEeEEEeCCCCCCeEc--cEEEEEEecCCCCeEEEEEEEcCCCCCCceeEEEe-ccc-ccccCCCCCc
Q psy7073 15 QVFCQVTMGSQEHTTSIISINTLEPKWN--SSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKTK-RVK-GEAINPREPN 90 (127)
Q Consensus 15 dpyv~i~~g~~~~~T~~~~~~~~~P~w~--e~~~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~-~l~-~~~~~~~~~~ 90 (127)
..|+.+..|....+|..+. -+..-.-+ +.....+... +..|.+.+|-.... +...||.+. .+. +++. .
T Consensus 75 hiyIef~~Gr~d~TT~~Ip-TsKK~RI~IqqRV~IkIRQc-DnTLkI~lfKKkLv-kk~hIgdI~InIn~dIId-----k 146 (508)
T PTZ00447 75 HIYIIFSTDKYDFTTDEIP-TNKKNRIHIDQRVDIKIRQC-DETLRVDLFTTKLT-KKVHIGQIKIDINASVIS-----K 146 (508)
T ss_pred eEEEEEEcCceEEEccccc-cCcCceEEEeeeeeeeeeec-CceEEEEEEecccc-ceeEEEEEEecccHHHHh-----c
Confidence 4577777788778776665 33332222 2233344443 35899999987654 577899999 887 4442 1
Q ss_pred cCCCceeeEEEec--ccccceEEEEeE
Q psy7073 91 LLMGSLCSKYVLY--KFTVAEIIQRKF 115 (127)
Q Consensus 91 ~~~~~~~~~~~l~--~~~~G~i~~~~~ 115 (127)
.-|-.+||.+. ++..++|.+ +|
T Consensus 147 --~FPKnkWy~c~kDGq~~cRIqL-SF 170 (508)
T PTZ00447 147 --SFPKNEWFVCFKDGQEICKVQM-SF 170 (508)
T ss_pred --cCCccceEEEecCCceeeeEEE-Ee
Confidence 34567788775 444477766 54
No 160
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=59.66 E-value=46 Score=21.61 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=54.0
Q ss_pred CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecC------------CCCeEEEEEEEcCCCCCCceeEEEe-
Q psy7073 11 THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDV------------QEDVLCITVFDKGHYSPDEFLGKTK- 77 (127)
Q Consensus 11 ~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~------------~~~~l~v~v~d~~~~~~d~~iG~~~- 77 (127)
..+.|.|..+++=++..+|+... .-.-=.+++.|.|.-... ..+.+.++++...... .+.++..+
T Consensus 17 ~~~~~vyL~v~~lg~~~~T~~~p-pvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~ye~ 94 (140)
T PF14909_consen 17 CDKGDVYLSVCILGQYKRTRCLP-PVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYYEE 94 (140)
T ss_pred CCCCCEEEEEEEcccEeecccCC-CcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEEec
Confidence 34668899999866677888776 444556788888853211 2457889999876643 78999999
Q ss_pred cccccccCCC
Q psy7073 78 RVKGEAINPR 87 (127)
Q Consensus 78 ~l~~~~~~~~ 87 (127)
+..|++-..+
T Consensus 95 n~rDfLfP~p 104 (140)
T PF14909_consen 95 NTRDFLFPEP 104 (140)
T ss_pred cccceEcCCC
Confidence 9999995443
No 161
>KOG0906|consensus
Probab=40.24 E-value=26 Score=28.69 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=34.4
Q ss_pred EeEEEeCCCCCCeEccEEEEEEecC---CCCeEEEEEEEcCCCCCCceeEEEe-ccc
Q psy7073 28 TTSIISINTLEPKWNSSMQFLIKDV---QEDVLCITVFDKGHYSPDEFLGKTK-RVK 80 (127)
Q Consensus 28 ~T~~~~~~~~~P~w~e~~~f~~~~~---~~~~l~v~v~d~~~~~~d~~iG~~~-~l~ 80 (127)
+|+... -...-.|||.+.+.+.-. .+..+.|++||...-....++|..+ .+.
T Consensus 67 ~ts~~~-~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf 122 (843)
T KOG0906|consen 67 RTSYKA-FSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLF 122 (843)
T ss_pred cccccc-cCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEee
Confidence 344333 233345999888865432 3568999999987655667888877 654
No 162
>KOG3543|consensus
Probab=33.62 E-value=2.8e+02 Score=23.12 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=41.8
Q ss_pred eecCCCCCCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcCCC---CCCceeEEEe
Q psy7073 4 GYKLKAPTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHY---SPDEFLGKTK 77 (127)
Q Consensus 4 a~~L~~~~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~~~---~~d~~iG~~~ 77 (127)
-.+|++.....-.||.+.....+..|.-.. ...|.|..+=.|....+. ..+++.+|..... -.|.-+|++-
T Consensus 350 vqglksvapnrivyctmevegeklqtdqae--askp~wgtqgdfstthpl-pvvkvklftestgvlaledkelgrvi 423 (1218)
T KOG3543|consen 350 VQGLKSVAPNRIVYCTMEVEGEKLQTDQAE--ASKPKWGTQGDFSTTHPL-PVVKVKLFTESTGVLALEDKELGRVI 423 (1218)
T ss_pred eccccccCCCeeEEEEEEecccccccchhh--hcCCCCCcCCCcccCCCC-ceeEEEEEeecceeEEeechhhCeEE
Confidence 344444422223466666655555555444 457999988888877765 4788888876531 1344555544
No 163
>PHA01474 nonstructural protein
Probab=32.90 E-value=49 Score=16.76 Aligned_cols=14 Identities=21% Similarity=0.762 Sum_probs=8.1
Q ss_pred eEEEEEecccCCCC
Q psy7073 114 KFKLLRFDRENCNC 127 (127)
Q Consensus 114 ~~~l~~~~~~~~~~ 127 (127)
+|.+-.-.++.|+|
T Consensus 35 sfriswrtetkcdc 48 (52)
T PHA01474 35 SFRISWRTETKCDC 48 (52)
T ss_pred eEEEEEeecccccc
Confidence 44455556666666
No 164
>KOG4028|consensus
Probab=32.60 E-value=39 Score=21.76 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=17.3
Q ss_pred CeEEEEEEEcCCCCCCceeEE
Q psy7073 55 DVLCITVFDKGHYSPDEFLGK 75 (127)
Q Consensus 55 ~~l~v~v~d~~~~~~d~~iG~ 75 (127)
..|.+.||.+|++++.+..|-
T Consensus 74 prl~~qiw~~dnfgr~eiagy 94 (175)
T KOG4028|consen 74 PRLHFQIWHHDNFGRCEIAGY 94 (175)
T ss_pred ceeeeeeeecCcccceeeccc
Confidence 368999999999998887654
No 165
>PF03128 CXCXC: CXCXC repeat; InterPro: IPR004153 This repeat contains the conserved pattern CXCXC where X can be any amino acid. The repeat is found in up to five copies in Vascular endothelial growth factor C []. In the salivary glands of the dipteran Chironomus tentans, a specific messenger ribonucleoprotein (mRNP) particle, the Balbiani ring (BR) granule, can be visualized during its assembly on the gene and during its nucleocytoplasmic transport. This repeat is found over 70 copies in the balbiani ring protein 3 (Q03376 from SWISSPROT). It is also found in some silk proteins [].
Probab=31.28 E-value=29 Score=13.05 Aligned_cols=9 Identities=22% Similarity=1.125 Sum_probs=5.7
Q ss_pred EecccCCCC
Q psy7073 119 RFDRENCNC 127 (127)
Q Consensus 119 ~~~~~~~~~ 127 (127)
.++.++|.|
T Consensus 3 ~wn~~tC~C 11 (14)
T PF03128_consen 3 VWNDDTCQC 11 (14)
T ss_pred eecCCCcCc
Confidence 466677765
No 166
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=29.40 E-value=1.4e+02 Score=18.21 Aligned_cols=69 Identities=14% Similarity=0.090 Sum_probs=39.6
Q ss_pred CeEEEEEEEcCC---CCCCceeEEEe-cccccccCCCC-C----ccCCC-ceeeEEEec---ccccceEEEEeEEEEEec
Q psy7073 55 DVLCITVFDKGH---YSPDEFLGKTK-RVKGEAINPRE-P----NLLMG-SLCSKYVLY---KFTVAEIIQRKFKLLRFD 121 (127)
Q Consensus 55 ~~l~v~v~d~~~---~~~d~~iG~~~-~l~~~~~~~~~-~----~~~~~-~~~~~~~l~---~~~~G~i~~~~~~l~~~~ 121 (127)
-+|.+.+|+... .....+||.+. ++.+....-.+ . ..+.. .....|.|. ....|+|.+ .+.|--++
T Consensus 29 ~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l-~iRLsclG 107 (112)
T PF14924_consen 29 FPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISL-YIRLSCLG 107 (112)
T ss_pred CceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEE-EEEEecCc
Confidence 467777766432 34567899999 98866521000 0 00011 223346665 345699999 77777666
Q ss_pred ccC
Q psy7073 122 REN 124 (127)
Q Consensus 122 ~~~ 124 (127)
...
T Consensus 108 ~~I 110 (112)
T PF14924_consen 108 SSI 110 (112)
T ss_pred ccc
Confidence 543
No 167
>KOG1032|consensus
Probab=21.86 E-value=1.3e+02 Score=24.38 Aligned_cols=54 Identities=11% Similarity=-0.117 Sum_probs=35.4
Q ss_pred CCCcccEEEEEECCeEEEeEEEeCCCCCCeEccEEEEEEecCCCCeEEEEEEEcC
Q psy7073 11 THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKG 65 (127)
Q Consensus 11 ~g~sdpyv~i~~g~~~~~T~~~~~~~~~P~w~e~~~f~~~~~~~~~l~v~v~d~~ 65 (127)
++.++||..+..........+.. .+..|.|++.+.|.-...+-....+..+++.
T Consensus 115 n~~~~~~~l~~~~~cal~reill-QGrmyis~~~icF~s~i~gw~~~~vIpf~eI 168 (590)
T KOG1032|consen 115 NGVPDPEILLTDYSCALQREILL-QGRMYISEEHICFNSNIFGWETKVVIPFDEI 168 (590)
T ss_pred hcCCCcceeeeecchhhcccccc-ccccccccceeeecccccCccceeEEeeeee
Confidence 44668888887766555556666 6789999999999754433234444445443
Done!