RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7073
(127 letters)
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 91.6 bits (227), Expect = 5e-23
Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 7/104 (6%)
Query: 10 PTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSP 69
P K +C+++MGSQ +TT I +TL PKWN + QF IKD+ +DVLC+T+FD+ +SP
Sbjct: 404 PNGKSNPYCEISMGSQSYTTRTIQ-DTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSP 462
Query: 70 DEFLGKTK------RVKGEAINPREPNLLMGSLCSKYVLYKFTV 107
D+FLG+T+ R + E+ P LL+ + + V +F +
Sbjct: 463 DDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDL 506
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 61.9 bits (151), Expect = 1e-13
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 17 FCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKT 76
FC + +G+ T + L P+WN F IKD+ DVL +TVFD+ P +FLGK
Sbjct: 37 FCLLELGNDRLQTHTVY-KNLNPEWNKVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKV 94
Query: 77 KRVKGEAINPREP 89
+ +I +P
Sbjct: 95 A-IPLLSIRDGQP 106
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 61.2 bits (149), Expect = 3e-13
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 17 FCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKT 76
+ Q+T +Q+ +++ P+WN + F + + L +FDK + D+ +G+
Sbjct: 34 YVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVGTEDDAVGEA 92
Query: 77 K 77
Sbjct: 93 T 93
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 61.4 bits (149), Expect = 4e-13
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 17 FCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKT 76
+ +VT+ Q T + NT PKW + ++ L V+ D LG
Sbjct: 60 YVEVTVDGQSKKTEKCN-NTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLLGTA 116
Query: 77 K 77
Sbjct: 117 A 117
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular
dystrophy, cardiomyopathy, membrane fusion, dystrophin,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 55.9 bits (135), Expect = 3e-11
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 17 FCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQED---VLCITVFDKGHYSPDEFL 73
V ++ T + N L P WN ++F ++ + D L I V D ++ +
Sbjct: 30 IVSVIFKDEKKKTKKVD-NELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLI 88
Query: 74 GKTK 77
G
Sbjct: 89 GTAT 92
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 55.2 bits (133), Expect = 4e-11
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 17 FCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKT 76
+ + + + T P W+ + + ++ + + VF D+F+
Sbjct: 41 YIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRK--IELAVFHDAPIGYDDFVANC 98
Query: 77 K 77
Sbjct: 99 T 99
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 57.6 bits (138), Expect = 5e-11
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 11 THKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQF-LIKDVQEDVLCITVFDKGHYSP 69
T + +V G QE T ++ N P+W M F + L + V+D +
Sbjct: 411 TTATDAYLKVFFGGQEFRTGVVW-NNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWD 469
Query: 70 DEFLGKTK 77
D+ LG
Sbjct: 470 DDLLGSCD 477
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 53.1 bits (127), Expect = 5e-10
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 17 FCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKT 76
+ V++ + T +P +N + D L + VF + D F+
Sbjct: 63 YLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDGGH--LELAVFHETPLGYDHFVANC 120
Query: 77 K 77
Sbjct: 121 T 121
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 52.5 bits (126), Expect = 7e-10
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 14/84 (16%)
Query: 17 FCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDK-----------G 65
+ V +G + T I L P W + F + D + + V D+
Sbjct: 41 YVTVQVGKTKKRTKTIY-GNLNPVWEENFHFECHN-SSDRIKVRVLDEDDDIKSRVKQRF 98
Query: 66 HYSPDEFLGKTKRVKGEAINPREP 89
D+FLG+T ++ ++
Sbjct: 99 KRESDDFLGQT-IIEVRTLSGEMD 121
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 48.9 bits (117), Expect = 9e-09
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 17 FCQVTMGS---QEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFL 73
+ ++ + + T + N + P WN + +F++ QE+VL IT+ D + DE L
Sbjct: 30 YVELFISTTPDSRKRTRHFN-NDINPVWNETFEFILDPNQENVLEITLMDANYVM-DETL 87
Query: 74 GKTK 77
G
Sbjct: 88 GTAT 91
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 46.4 bits (110), Expect = 2e-07
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 17 FCQVTMG------SQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPD 70
+ +VT+ T I +L PKWN + F + Q + VFD+ + D
Sbjct: 32 YVRVTLYDPMSGILTSVQTKTIK-KSLNPKWNEEILFRVLP-QRHRILFEVFDENRLTRD 89
Query: 71 EFLGKTK 77
+FLG+
Sbjct: 90 DFLGQVD 96
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 44.0 bits (104), Expect = 9e-07
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 17 FCQVTMG------SQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPD 70
+ +VT+ T I +L PKWN + F + Q+ L VFD+ + D
Sbjct: 44 YVRVTLYDPMNGVLTSVQTKTIK-KSLNPKWNEEILFRVHP-QQHRLLFEVFDENRLTRD 101
Query: 71 EFLGKTK 77
+FLG+
Sbjct: 102 DFLGQVD 108
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 44.9 bits (105), Expect = 1e-06
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 17 FCQVTMG---SQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFL 73
+ ++ + T + N + P WN + +F++ QE+VL IT+ D + DE L
Sbjct: 45 YVELFISTTPDSRKRTRHFN-NDINPVWNETFEFILDPNQENVLEITLMDANYVM-DETL 102
Query: 74 GKTK 77
G
Sbjct: 103 GTAT 106
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding,
membrane associate, lipid binding PROT; 1.96A {Homo
sapiens} PDB: 2jqz_A
Length = 132
Score = 43.5 bits (103), Expect = 1e-06
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 17 FCQVTM--GSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDE--- 71
F ++ + Q H+T + NTL+PKWN + + + D + I+V++ +
Sbjct: 29 FAKIVVDGSGQCHSTDTVK-NTLDPKWNQH--YDLYVGKTDSITISVWNHKKIHKKQGAG 85
Query: 72 FLGKTK 77
FLG +
Sbjct: 86 FLGCVR 91
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 43.1 bits (102), Expect = 2e-06
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 23 GSQEHTTSIISINTLEPKWNSSMQFLIK-DVQEDVLCITVFDKGHYSPDEFLGKTK 77
+ T I +TL P+WN S F +K ++ L + ++D + ++F+G
Sbjct: 51 NESKQKTKTIR-STLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLS 105
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 44.1 bits (104), Expect = 2e-06
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 16 VFCQVTMGSQE-----HTTSIISINTLEPKWNSSMQFLIK--DVQEDVLCITVFDKGHYS 68
+ + ++ S+ TSI NTL P +N ++ F + V+ L I V D
Sbjct: 175 PYVKASLISEGRRLKKRKTSIKK-NTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIG 233
Query: 69 PDEFLGK 75
+E +G
Sbjct: 234 HNEVIGV 240
Score = 39.0 bits (91), Expect = 1e-04
Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 23 GSQEHTTSIISINTLEPKWNSSMQFLIK--DVQEDVLCITVFDKGHYSPDEFLGK 75
++ T + TL P +N + QF + ++ + L +V+D +S + +G+
Sbjct: 53 RKKKFQTKVHR-KTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQ 106
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 42.0 bits (99), Expect = 6e-06
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 10 PTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLI---KDVQEDVLCITVFDKGH 66
P + + Q + T + +L P+WN ++ + + + + L +TV+D
Sbjct: 49 PGRGQVMVVQNASAEYKRRTKYVQ-KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDR 107
Query: 67 YSPDEFLGKTK 77
+S ++FLG+
Sbjct: 108 FSSNDFLGEVL 118
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 41.2 bits (97), Expect = 1e-05
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 23 GSQEHTTSIISINTLEPKWNSSMQFLIKDVQED-VLCITVFDKGHYSPDEFLGKTK 77
+ T I +L P+WN + +F +K+ +D L + ++D S ++F+G
Sbjct: 66 SESKQKTKTIK-CSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLS 120
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 41.2 bits (97), Expect = 1e-05
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 23 GSQEHTTSIISINTLEPKWNSSMQFLIK--DVQEDVLCITVFDKGHYSPDEFLGKTK 77
GS E T++ L W + + ++ L +T+ +S G+ +
Sbjct: 57 GSVEAQTALKK-RQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELR 112
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 42.1 bits (99), Expect = 1e-05
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 16 VFCQVTMGSQE-----HTTSIISINTLEPKWNSSMQFLIK--DVQEDVLCITVFDKGHYS 68
+ ++ + T+I NTL P +N S F + +Q+ + +TV D
Sbjct: 173 PYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG 231
Query: 69 PDEFLGK 75
++ +GK
Sbjct: 232 KNDAIGK 238
Score = 37.1 bits (86), Expect = 6e-04
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 23 GSQEHTTSIISINTLEPKWNSSMQFLI--KDVQEDVLCITVFDKGHYSPDEFLGKTK 77
++ T + TL P +N F + ++ L + V+D +S + +G+ K
Sbjct: 52 KKKKFETKVHR-KTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFK 107
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 40.4 bits (94), Expect = 3e-05
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 6 KLKAPTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKG 65
K K + + + + E TT I++ +P W F I + L + V++KG
Sbjct: 24 KFDGAQEKFNTYVTLKVQNVESTT--IAVRGSQPSWEQDFMFEINRLDLG-LTVEVWNKG 80
Query: 66 HYSPDEFLGKTK 77
D +G
Sbjct: 81 LIW-DTMVGTVW 91
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 39.6 bits (93), Expect = 4e-05
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 29 TSIISINTLEPKWNSSMQFLIK--DVQEDVLCITVFDKGHYSPDEFLGK 75
T + T +N F I ++E + V D S +E +G+
Sbjct: 71 THVKK-CTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGR 118
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 38.9 bits (91), Expect = 6e-05
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 24 SQEHTTSIISINTLEPKWNSSMQFLIK--DVQEDVLCITVFDKGHYSPDEFLGKTK 77
++ T + TL P +N F + ++ L + V+D +S + +G+ K
Sbjct: 68 KKKFETKVHR-KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFK 122
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 38.9 bits (91), Expect = 8e-05
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 29 TSIISINTLEPKWNSSMQFLIK--DVQEDVLCITVFDKGHYSPDEFLGK 75
T I TL P++N + IK D+ + L I+V+D ++++G
Sbjct: 78 TQIKK-KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGG 125
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 38.9 bits (91), Expect = 8e-05
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 24 SQEHTTSIISINTLEPKWNSSMQFLIK--DVQEDVLCITVFDKGHYSPDEFLGKTK 77
++ T + TL P +N F + ++ L + V+D +S + +G+ K
Sbjct: 76 KKKFETKVHR-KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFK 130
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 38.2 bits (89), Expect = 1e-04
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 35 NTLEPKWNSSMQFLIK--DVQEDVLCITVFDKGHYSPDEFLGKTK 77
T +P + F I + Q L +TV D +S +GK
Sbjct: 77 KTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVS 121
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 38.1 bits (89), Expect = 1e-04
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 29 TSIISINTLEPKWNSSMQFLIK--DVQEDVLCITVFDKGHYSPDEFLGK 75
T L P +N S F I ++E + ITV DK S ++ +GK
Sbjct: 57 TVTKK-RNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGK 104
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 38.1 bits (89), Expect = 2e-04
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 29 TSIISINTLEPKWNSSMQFLI---KDVQEDVLCITVFDKGHYSPDEFLGKTK 77
T + L P WN + F + V + +L + V D +S ++ +G+
Sbjct: 65 TKVKR-KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVS 115
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 38.2 bits (89), Expect = 2e-04
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 29 TSIISINTLEPKWNSSMQFLIK--DVQEDVLCITVFDKGHYSPDEFLGK 75
T+I NTL P +N S F + +Q+ + +TV D ++ +GK
Sbjct: 66 TTIKK-NTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGK 113
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 37.3 bits (87), Expect = 3e-04
Identities = 9/44 (20%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 35 NTLEPKWNSSMQFLI--KDVQEDVLCITVFDKGHYSPDEFLGKT 76
+T+ P ++ ++++ I + + L +V+ G + + FLG+
Sbjct: 70 DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEA 113
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 36.9 bits (86), Expect = 3e-04
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 24 SQEHTTSIISINTLEPKWNSSMQFLI---KDVQEDVLCITVFDKGHYSPDEFLGKTK 77
+ T ++ TL+P ++ + F +QE L T+ +S D+ +G+
Sbjct: 57 KHKVKTRVLR-KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVL 112
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 36.6 bits (85), Expect = 5e-04
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 29 TSIISINTLEPKWNSSMQFL---IKDVQEDVLCITVFDKGHYSPDEFLGKTK 77
T + NT P WN ++Q+ +D+Q L I+V D+ + +EF+G+T+
Sbjct: 70 TKTLR-NTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETR 120
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 36.8 bits (84), Expect = 0.001
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 24 SQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLG 74
+ T++I+ N P+W+ +F + ++ V D S ++F+G
Sbjct: 535 TGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIG 585
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 35.5 bits (82), Expect = 0.001
Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 24 SQEHTTSIISINTLEPKWNSSMQFLIK--DVQEDVLCITVFDKGHYSPDEFLGKTK 77
+ T + + +N + + + L + V +E LG +
Sbjct: 80 TCLFRTRPLD-ASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQ 134
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 35.0 bits (80), Expect = 0.002
Identities = 8/63 (12%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 17 FCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKD--VQEDVLCITVFDKGHYSPDEFLG 74
+VT Q + ++ ++ + ++ + + +VL I +F+ ++ +G
Sbjct: 40 IAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIG 99
Query: 75 KTK 77
+
Sbjct: 100 TFR 102
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 33.9 bits (78), Expect = 0.005
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 29 TSIISINTLEPKWNSSMQFLIK--DVQEDVLCITVFDKGHYSPDE--FLGKT 76
T + TL P ++ S F + +VQ L + V + G + + LGK
Sbjct: 64 THVSK-KTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKV 114
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 33.8 bits (78), Expect = 0.005
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 35 NTLEPKWNSSMQFLI---KDVQEDVLCITVFDKGHYSPDEFLGKTK 77
T P +N + + + +++ L ++V + FLG
Sbjct: 65 KTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGIT 110
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 33.2 bits (76), Expect = 0.011
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 29 TSIISINTLEPKWNSSMQFLIKDVQEDVLCITVF-DKGHYSPDEFLGKT 76
T I TL+P + S+ F Q VL + V+ D G F+G
Sbjct: 72 TRIAR-KTLDPLYQQSLVFDE-SPQGKVLQVIVWGDYGRMDHKCFMGVA 118
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 32.4 bits (74), Expect = 0.020
Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 27 HTTSIISINTLEPKWNSSMQFLIK-DVQEDVLCITVFDKGHYS-PDEFLGKTKRVKGEAI 84
T + + +P ++ F ++ + + L +TV+++ S +G +
Sbjct: 65 QKTQTVP-DCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLL 123
Query: 85 NPREP 89
P +
Sbjct: 124 TPDKE 128
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 31.1 bits (71), Expect = 0.036
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 35 NTLEPKWNSSMQFLI---KDVQEDVLCITVFDKGHYSPDE--FLGKTK 77
TLEPKWN + + ++ +E +L IT++D+ +E FLG+
Sbjct: 64 KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEIL 111
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 31.1 bits (71), Expect = 0.044
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 35 NTLEPKWNSSMQFLI---KDVQEDVLCITVFDKGHYSPDE--FLGKTK 77
TLEPKWN + + ++ +E +L IT++D+ +E FLG+
Sbjct: 67 KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEIL 114
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.069
Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 52/121 (42%)
Query: 6 KLKAPTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFL--------------IKD 51
K KAP+ Q ++ S+ K S +FL
Sbjct: 395 KAKAPSGLDQ--SRIPF-SER-------------KLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 52 VQEDV-----------LCITVFDKGHYSPDEFLGKTKRVKGEAINPREPNLLMGSLCSKY 100
+ +D+ + I V+D + D G RV +I+ R ++ +
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYD----TFD---GSDLRVLSGSISER----IVDCIIRLP 487
Query: 101 V 101
V
Sbjct: 488 V 488
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 26.2 bits (58), Expect = 3.9
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 32 ISINTLEPKWNSSMQFLIKDVQE 54
+++TL P+W+ F +
Sbjct: 297 KTMDTLFPEWSFWGDFFVSRTSG 319
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 25.9 bits (56), Expect = 5.3
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 44 SMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKT 76
SM + +V +V + +FD+ HY D+ G
Sbjct: 181 SMLYRGSEVMREVAWV-IFDEVHYMRDKERGVV 212
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 26.0 bits (56), Expect = 5.4
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 44 SMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKT 76
SM + +V +V + +FD+ HY D+ G
Sbjct: 279 SMLYRGSEVMREVAWV-IFDEVHYMRDKERGVV 310
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 5.8
Identities = 4/38 (10%), Positives = 11/38 (28%), Gaps = 23/38 (60%)
Query: 33 SINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPD 70
++ L+ +S++ Y+ D
Sbjct: 21 ALKKLQ----ASLKL-------------------YADD 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.408
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,832,343
Number of extensions: 93280
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 49
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)