RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7073
(127 letters)
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 40.1 bits (93), Expect = 1e-05
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 6 KLKAPTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKG 65
+ + + Q+T +Q+ +++ P+WN + F + + L +FDK
Sbjct: 23 EDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKD 81
Query: 66 HYSPDEFLGKTK 77
+ D+ +G+
Sbjct: 82 VGTEDDAVGEAT 93
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme
D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 38.6 bits (89), Expect = 3e-05
Identities = 12/60 (20%), Positives = 27/60 (45%)
Query: 17 FCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKT 76
V + T++I+ N P+W+ +F + ++ V D S ++F+G++
Sbjct: 35 IHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQS 94
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 38.1 bits (88), Expect = 4e-05
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 16 VFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQED-VLCITVFDKGHYSPDEFLG 74
+ S+ + +L P+WN + +F +K+ +D L + ++D S ++F+G
Sbjct: 42 LKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMG 101
Query: 75 KTK 77
Sbjct: 102 SLS 104
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 37.9 bits (87), Expect = 8e-05
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 15 QVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLI--KDVQEDVLCITVFDKGHYSPDEF 72
++ + + I NTL P +N S F + + +Q+ + +TV D ++
Sbjct: 51 KIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDA 110
Query: 73 LGKT 76
+GK
Sbjct: 111 IGKV 114
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 37.0 bits (85), Expect = 1e-04
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 8 KAPTHKRQVFCQVTMGSQ-----EHTTSIISINTLEPKWNSSMQFLIK--DVQEDVLCIT 60
+ + +V + + T + T +N F I ++E +
Sbjct: 30 SDVSGLSDPYVKVNLYHAKKRISKKKTHVKK-CTPNAVFNELFVFDIPCESLEEISVEFL 88
Query: 61 VFDKGHYSPDEFLGKT 76
V D S +E +G+
Sbjct: 89 VLDSERGSRNEVIGRL 104
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 33.9 bits (77), Expect = 0.001
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 23 GSQEHTTSIISINTLEPKWNSSMQFLI---KDVQEDVLCITVFDKGHYSPD--EFLGKTK 77
+ T + TLEPKWN + + ++ +E +L IT++D+ + EFLG+
Sbjct: 49 DKNKRRTKTVK-KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEIL 107
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 33.2 bits (75), Expect = 0.003
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 11 THKRQVFCQVTMGSQEHTTS----IISINTLEPKWNSSMQFLI--KDVQEDVLCITVFDK 64
T + + ++ S+ I NTL P +N ++ F + + V+ L I V D
Sbjct: 38 TGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY 97
Query: 65 GHYSPDEFLGKTK 77
+E +G +
Sbjct: 98 DCIGHNEVIGVCR 110
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 33.2 bits (75), Expect = 0.003
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 16 VFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIK--DVQEDVLCITVFDKGHYSPDEFL 73
V + ++ + + TL P +N F + ++ L + V+D +S + +
Sbjct: 59 VKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDII 118
Query: 74 GKTK 77
G+ K
Sbjct: 119 GEFK 122
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 142
Score = 31.8 bits (71), Expect = 0.010
Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 10 PTHKRQVFCQVTMGSQEHTTSIISINTLEPKWNSSMQFLI---KDVQEDVLCITVFDKGH 66
P + + Q + T + +L P+WN ++ + + + + L +TV+D
Sbjct: 49 PGRGQVMVVQNASAEYKRRTKYVQ-KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDR 107
Query: 67 YSPDEFLGKTKRVKGEAINPREP 89
+S ++FLG+ + + + +
Sbjct: 108 FSSNDFLGEV-LIDLSSTSHLDN 129
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 31.6 bits (71), Expect = 0.011
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 23 GSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDV---LCITVFDKGHYSPDEFLGKTK 77
+ T ++ TL+P ++ + F + L T+ +S D+ +G+
Sbjct: 56 KKHKVKTRVLR-KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVL 112
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy
{Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 28.6 bits (63), Expect = 0.15
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 17 FCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKT 76
+ +VT+ Q T + PKW + ++ V + V+ D LG
Sbjct: 30 YVEVTVDGQSKKTEKCNNT-NSPKWKQPLTVIVTPVSKLH--FRVWSHQTLKSDVLLGTA 86
Query: 77 K 77
Sbjct: 87 A 87
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 25.9 bits (56), Expect = 0.96
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 17 FCQVTMGSQEHTTSIISINTLEPKWNSSMQFLIKDVQEDVLCITVFDKGHYSPDEFLGKT 76
FC + +G+ T + L P+WN F IKD DVL +TVFD+ P +FLGK
Sbjct: 30 FCLLELGNDRLQTHTV-YKNLNPEWNKVFTFPIKD-IHDVLEVTVFDEDGDKPPDFLGKV 87
Query: 77 KRVKGEAINPREPN 90
+ +I +PN
Sbjct: 88 -AIPLLSIRDGQPN 100
>d1d6za3 d.17.2.1 (A:186-300) Copper amine oxidase, domains 1 and
2 {Escherichia coli [TaxId: 562]}
Length = 115
Score = 24.4 bits (53), Expect = 3.0
Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 39 PKWNSSMQFL-IKDVQEDVLCITVFDKGHYSPDEFLGKTKRV 79
++ ++++ I D + T G++ + L + R+
Sbjct: 18 EEFAAAVKKRGITDA--KKVITTPLTVGYFDGKDGLKQDARL 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.408
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 454,591
Number of extensions: 18528
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 13
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.8 bits)