BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7075
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 76/102 (74%), Gaps = 1/102 (0%)
Query: 5 LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSS-KGDIRMIGD 63
L ++F+KPL ES++LT +E IFVNWKE+I+CN L+ALRVR+ MS K ++MIGD
Sbjct: 103 LVTEIFQKPLTESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGD 162
Query: 64 ILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKK 105
IL LP M Y+RFCSCQL+ AAL+Q+ TD++P+FK K+
Sbjct: 163 ILSAQLPHMQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKR 204
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 116 bits (291), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 5 LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSS-KGDIRMIGD 63
L ++F+KPL ES++LT +E IFVNWKE+I+CN L+ALRVR+ MS K ++MIGD
Sbjct: 30 LVTEIFQKPLMESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGD 89
Query: 64 ILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISR 111
IL LP M Y+RFCS QL+ AAL+Q+ TD++P+FK K+ R
Sbjct: 90 ILSAQLPHMQPYIRFCSRQLNGAALIQQKTDEAPDFKEFVKRLEMDPR 137
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|D Chain D, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 351
Score = 116 bits (290), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Query: 5 LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSS-KGDIRMIGD 63
L ++F+KPL ES++LT +E IFVNWKE+I+CN L+ALRVR+ MS K ++MIGD
Sbjct: 30 LVTEIFQKPLMESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGD 89
Query: 64 ILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKK 105
IL LP M Y+RFCS QL+ AAL+Q+ TD++P+FK K+
Sbjct: 90 ILSAQLPHMQPYIRFCSRQLNGAALIQQKTDEAPDFKEFVKR 131
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 5 LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSS-KGDIRMIGD 63
L +VF+K + ES LT E IFVNWKE+I+ N L+ALRVR+ K ++MIGD
Sbjct: 119 LVVEVFQKRMAESGFLTEGEMALIFVNWKELIMSNTKLLKALRVRKKTGGEKMPVQMIGD 178
Query: 64 ILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKK 105
IL L M AY+RFCSCQL+ AALLQ+ TD+ +FK KK
Sbjct: 179 ILAAELSHMQAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKK 220
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 102 bits (254), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 5 LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSS-KGDIRMIGD 63
L +VF+K + ES LT E IFVNWKE+I+ N L+ALRVR+ K ++MIGD
Sbjct: 48 LVVEVFQKRMAESGFLTEGEMALIFVNWKELIMSNTKLLKALRVRKKTGGEKMPVQMIGD 107
Query: 64 ILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKK 105
IL L M AY+RFCSCQL+ AALLQ+ TD+ +FK KK
Sbjct: 108 ILAAELSHMQAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKK 149
>pdb|3EO2|A Chain A, Crystal Structure Of The Rhogef Domain Of Human
Neuroepithelial Cell- Transforming Gene 1 Protein
Length = 231
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 5 LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDI 64
L R+ + P+ + I++ EE IF + I + L R+ G + IG I
Sbjct: 53 LARKAYHDPMLKLSIMSEEELTHIFGDLDSYIPLHEDLLT--RIGEATKPDGTVEQIGHI 110
Query: 65 LCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKC 106
L LPR+ AY +CS QL+A ALL + Q P + ++C
Sbjct: 111 LVSWLPRLNAYRGYCSNQLAAKALLDQ-KKQDPRVQDFLQRC 151
>pdb|2Z0Q|A Chain A, Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln)
Length = 352
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 5 LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDI 64
L ++ + P + I T +E QIF +I + L LR R G +G I
Sbjct: 40 LAKKAYHDPXLKLSIXTEQELNQIFGTLDSLIPLHEELLSQLRDVR--KPDGSTEHVGPI 97
Query: 65 LCEHLPRMTAYVRFCSCQLSAAALL 89
L LP +++Y +CS Q++A ALL
Sbjct: 98 LVGWLPCLSSYDSYCSNQVAAKALL 122
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 34.7 bits (78), Expect = 0.016, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 5 LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDI 64
+C + K + + + E+ IF N ++I C F++AL R + + + +G
Sbjct: 140 ICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFN-RERPHLSELGAC 198
Query: 65 LCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRI 112
EH Y +C+ +A L +LT S ++ + CR + ++
Sbjct: 199 FLEHQADFQIYSEYCNNHPNACVELSRLTKLS-KYVYFFEACRLLQKM 245
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 33.5 bits (75), Expect = 0.034, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 5 LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDI 64
+C + K + + E+ IF N ++I C F++AL R + + + +G
Sbjct: 177 ICEGYVRQCRKRADXFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFN-RERPHLSELGAC 235
Query: 65 LCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISR 111
EH Y +C+ +A L +LT S ++ + CR + +
Sbjct: 236 FLEHQADFQIYSEYCNNHPNACVELSRLTKLS-KYVYFFEACRLLQK 281
>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
pdb|3P6A|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
Length = 377
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 9 VFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEH 68
+F +P+ E EE IF + E+I + +FL L RR S I IGD+L
Sbjct: 52 LFFQPMAECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYL-IEEIGDVLLAR 110
Query: 69 LPRMTA------YVRFCSCQLSAAALLQKLTDQSPEF 99
RFCS Q A L+ + P F
Sbjct: 111 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRF 147
>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
pdb|3ODO|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
Length = 375
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 9 VFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEH 68
+F +P+ E EE IF + E+I + +FL L RR S I IGD+L
Sbjct: 50 LFFQPMAECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYL-IEEIGDVLLAR 108
Query: 69 LPRMTA------YVRFCSCQLSAAALLQKLTDQSPEF 99
RFCS Q A L+ + P F
Sbjct: 109 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRF 145
>pdb|3ODX|A Chain A, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
pdb|3ODX|B Chain B, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
Length = 417
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 9 VFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEH 68
+F +P+ E EE IF + E+I + +FL L RR S I IGD+L
Sbjct: 92 LFFQPMAECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYL-IEEIGDVLLAR 150
Query: 69 LPRMTA------YVRFCSCQLSAAALLQKLTDQSPEF 99
RFCS Q A L+ + P F
Sbjct: 151 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRF 187
>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
pdb|3ODW|B Chain B, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
Length = 536
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 9 VFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEH 68
+F +P+ E EE IF + E+I + +FL L RR S I IGD+L
Sbjct: 205 LFFQPMAECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYL-IEEIGDVLLAR 263
Query: 69 LPRMTA------YVRFCSCQLSAAALLQKLTDQSPEF 99
RFCS Q A L+ + P F
Sbjct: 264 FDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRF 300
>pdb|2DFK|A Chain A, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|C Chain C, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 402
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 5 LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDI 64
+C ++ K + + E+ IF N ++I F+R L + + + + IG
Sbjct: 63 ICEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYN-NDDPHLSEIGPC 121
Query: 65 LCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRI 112
EH Y +C+ L A L KL S ++ + CR + ++
Sbjct: 122 FLEHQDGFWIYSEYCNNHLDACMELSKLMKDS-RYQHFFEACRLLQQM 168
>pdb|3T06|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|E Chain E, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 418
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Query: 9 VFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILC-- 66
+F + +K+ ++ REE ++F N E+I ++ + A++ R+ I+ I D++
Sbjct: 88 IFYQRMKKENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGPI--IKEISDLMLAR 145
Query: 67 ------EHLPRMTAYVRFCSCQLSAAALLQ 90
E L ++ A +FCS Q A L++
Sbjct: 146 FDGPAREELQQVAA--QFCSYQSIALELIK 173
>pdb|1XCG|A Chain A, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|E Chain E, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
Length = 368
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Query: 9 VFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILC-- 66
+F + +K+ ++ REE ++F N E+I ++ + A++ R+ I+ I D++
Sbjct: 46 IFYQRMKKENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGPI--IKEISDLMLAR 103
Query: 67 ------EHLPRMTAYVRFCSCQLSAAALLQ 90
E L ++ A +FCS Q A L++
Sbjct: 104 FDGPAREELQQVAA--QFCSYQSIALELIK 131
>pdb|3KZ1|A Chain A, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|B Chain B, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 383
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Query: 9 VFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILC-- 66
+F + +K+ ++ REE ++F N E+I ++ + A++ R+ I+ I D++
Sbjct: 51 IFYQRMKKENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGPI--IKEISDLMLAR 108
Query: 67 ------EHLPRMTAYVRFCSCQLSAAALLQ 90
E L ++ A +FCS Q A L++
Sbjct: 109 FDGPAREELQQVAA--QFCSYQSIALELIK 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,044,099
Number of Sequences: 62578
Number of extensions: 93662
Number of successful extensions: 213
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 18
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 46 (22.3 bits)