Query psy7075
Match_columns 135
No_of_seqs 123 out of 709
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 17:27:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jv3_A Intersectin-1; SH3 doma 100.0 2.7E-31 9.2E-36 202.0 11.3 134 2-135 100-238 (283)
2 2z0q_A XPLN, RHO guanine nucle 100.0 2.2E-31 7.6E-36 207.9 9.9 131 2-135 37-171 (346)
3 1xcg_A PDZ-rhogef, RHO guanine 100.0 2.6E-30 8.7E-35 203.2 11.9 132 2-135 39-180 (368)
4 3p6a_A RHO guanine nucleotide 100.0 3E-30 1E-34 203.3 11.2 133 2-135 45-187 (377)
5 1txd_A RHO guanine nucleotide 100.0 5.2E-30 1.8E-34 202.8 11.6 133 2-135 42-185 (385)
6 1by1_A Protein (PIX); RHO-GTPa 100.0 1.4E-30 4.7E-35 191.3 5.6 128 2-135 31-163 (209)
7 3t06_A PDZ-rhogef, RHO guanine 100.0 1.7E-29 5.8E-34 201.6 12.2 132 2-135 81-222 (418)
8 2vrw_B P95VAV, VAV1, proto-onc 100.0 1.3E-29 4.5E-34 201.8 11.0 129 2-135 43-175 (406)
9 2dfk_A Collybistin II; DH doma 100.0 3.2E-29 1.1E-33 199.8 10.9 132 2-135 59-195 (402)
10 1foe_A T-lymphoma invasion and 100.0 1.4E-29 4.7E-34 199.9 7.6 132 2-135 29-175 (377)
11 3odw_A RHO guanine nucleotide 100.0 6.8E-29 2.3E-33 204.5 11.4 133 2-135 198-340 (536)
12 3mpx_A FYVE, rhogef and PH dom 100.0 4.8E-29 1.6E-33 199.7 7.9 132 2-135 40-184 (434)
13 1dbh_A Protein (human SOS 1); 99.9 1.1E-28 3.6E-33 193.3 6.3 133 2-135 21-164 (354)
14 2pz1_A RHO guanine nucleotide 99.9 3.1E-28 1E-32 196.9 8.9 132 2-135 136-272 (466)
15 3jzy_A Intersectin 2; C2 domai 99.9 1.7E-29 5.7E-34 205.3 0.0 134 2-135 45-183 (510)
16 3ky9_A Proto-oncogene VAV; cal 99.9 1.2E-27 4E-32 198.7 7.2 129 2-135 215-347 (587)
17 3ksy_A SOS-1, SON of sevenless 99.9 6.2E-26 2.1E-30 198.5 5.6 133 2-135 218-361 (1049)
18 1kz7_A Guanine nucleotide exch 99.9 2.1E-25 7.2E-30 175.0 7.7 123 2-135 29-162 (353)
19 1nty_A Triple functional domai 99.9 2.4E-24 8.2E-29 166.1 9.4 122 2-135 27-157 (311)
20 2rgn_B RHOA/RAC/CDC42 exchange 99.9 3.9E-24 1.3E-28 167.9 7.1 122 2-135 30-158 (354)
21 4gou_A EHRGS-rhogef; RGS domai 89.6 0.94 3.2E-05 34.5 6.4 78 9-92 211-288 (518)
22 3f1i_H Hepatocyte growth facto 76.5 1.1 3.9E-05 28.3 1.6 47 3-49 9-60 (98)
23 2lwd_A Probable ATP-dependent 43.4 59 0.002 20.4 7.2 78 29-109 4-88 (100)
24 1m3w_A H10H24; four-helix bund 43.3 29 0.00098 16.7 3.0 19 33-51 4-22 (32)
25 3ygs_P Procaspase 9; apoptosis 34.5 40 0.0014 20.7 3.3 29 80-108 51-80 (97)
26 2lnm_A Protein TIC 40, chlorop 33.5 36 0.0012 19.1 2.7 18 95-112 19-36 (62)
27 3kae_A CDC27, possible protein 31.0 32 0.0011 24.6 2.5 61 32-99 181-241 (242)
28 2p1h_A APAF-1, apoptotic prote 24.6 57 0.002 19.5 2.7 30 79-108 49-79 (94)
29 1whr_A Hypothetical KIAA1002 p 22.5 73 0.0025 20.7 3.0 22 109-130 46-68 (124)
30 1j1v_A Chromosomal replication 20.9 1E+02 0.0035 18.8 3.3 26 83-108 65-90 (94)
No 1
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A
Probab=99.97 E-value=2.7e-31 Score=201.99 Aligned_cols=134 Identities=44% Similarity=0.799 Sum_probs=125.1
Q ss_pred chHhHHHHHHHHHHhCCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCC-CCccchHHHHHhhCCCcchHHHhhh
Q psy7075 2 KTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSK-GDIRMIGDILCEHLPRMTAYVRFCS 80 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~-~~~~~IGdvfl~~~~~~~~Y~~Yc~ 80 (135)
+|+++.++|+.|+...+++++.+++.||+|+++|+++|+.|+.+|+.+...+++ ...+.||++|+.+++.|++|..||+
T Consensus 100 ~L~~l~~~y~~~l~~~~~l~~~~~~~iF~ni~~i~~~~~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~~~~~Y~~Y~~ 179 (283)
T 3jv3_A 100 DLQLVTEIFQKPLTESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPHMQPYIRFCS 179 (283)
T ss_dssp HHHHHHHHTTHHHHTTCSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCHHHHHHHGGGGTHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHhccccCCchhHHHHHHHHHHhhchhHHHHHc
Confidence 588999999999999999999999999999999999999999999988665433 3368999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075 81 CQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEIV 135 (135)
Q Consensus 81 n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~ 135 (135)
|++.|..+++++.++|+.|++|+++|+.+|.|++++|.+ ++|+||+ |++||++|.
T Consensus 180 ~~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~ll 238 (283)
T 3jv3_A 180 CQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQRVTRYPLIIKNIL 238 (283)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHTTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHHHhCccccCCCHHHHhhhhHHHhcchHHHHHHHH
Confidence 999999999999999999999999999999999999998 5899999 999999973
No 2
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=99.97 E-value=2.2e-31 Score=207.95 Aligned_cols=131 Identities=27% Similarity=0.417 Sum_probs=110.0
Q ss_pred chHhHHHHHHHHHHhCCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCCCCccchHHHHHhhCCCcchHHHhhhc
Q psy7075 2 KTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRMTAYVRFCSC 81 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~~~~~~IGdvfl~~~~~~~~Y~~Yc~n 81 (135)
+|+++.++|+.||...+++++++++.||+|+++|+++|+.|+.+|+++...| +..+.||++|+++++.|++|..||+|
T Consensus 37 ~L~~l~~~y~~~l~~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~--~~~~~ig~~f~~~~~~~~~Y~~Y~~n 114 (346)
T 2z0q_A 37 DLKLAKKAYHDPMLKLSIMTEQELNQIFGTLDSLIPLHEELLSQLRDVRKPD--GSTEHVGPILVGWLPCLSSYDSYCSN 114 (346)
T ss_dssp HHHHHHHHTHHHHHHTTSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCTT--SCCSCCHHHHHHHGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHhccC--CccchHHHHHHHHhhHHHHHHHHHHC
Confidence 5889999999999999999999999999999999999999999999985544 44789999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCCc--cchHHH--HHHHHhhhC
Q psy7075 82 QLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETETI--SPLLKL--ISPLLKEIV 135 (135)
Q Consensus 82 ~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~~--~p~~~~--~~~~~~~~~ 135 (135)
|+.|..+++++. +|++|++|+++|+.+|.|++++|.++ +|+||+ |++||+||.
T Consensus 115 ~~~a~~~l~~~~-~~~~f~~fl~~~~~~~~~~~l~L~~~L~~PvQRi~rY~LLL~~ll 171 (346)
T 2z0q_A 115 QVAAKALLDHKK-QDHRVQDFLQRCLESPFSRKLDLWNFLDIPRSRLVKYPLLLREIL 171 (346)
T ss_dssp HHHHHHHHHHHT-TCHHHHCC-------------CTTTGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-cCHHHHHHHHHHHhCccCCCCCHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999975 89999999999999999999999994 999999 999999973
No 3
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=99.97 E-value=2.6e-30 Score=203.24 Aligned_cols=132 Identities=21% Similarity=0.334 Sum_probs=122.6
Q ss_pred chHhHHHHHHHHHHhCCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCCCCccchHHHHHhhCC------CcchH
Q psy7075 2 KTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLP------RMTAY 75 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~~~~~~IGdvfl~~~~------~~~~Y 75 (135)
+|+++.++|+.||...+++++++++.||||+++|+++|+.|+.+|+.+...+ +..+.||++|+++++ .+++|
T Consensus 39 ~L~~l~~~f~~~l~~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~--~~~~~ig~~f~~~~~~~~~~~~~~~Y 116 (368)
T 1xcg_A 39 TLRVLDLIFYQRMKKENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEG--PIIKEISDLMLARFDGPAREELQQVA 116 (368)
T ss_dssp HHHHHHHHTHHHHHHTTSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHTC--SSCCCCHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcC--CCcCcHHHHHHHHccchhHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999875443 457899999999875 36999
Q ss_pred HHhhhcHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075 76 VRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEIV 135 (135)
Q Consensus 76 ~~Yc~n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~ 135 (135)
..||+|++.|..+++++.++|+.|++|+++|+.+|.|++++|.+ ++|+||+ |++||++|+
T Consensus 117 ~~Y~~~~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~ll 180 (368)
T 1xcg_A 117 AQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESII 180 (368)
T ss_dssp HHHHTTHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhCCHHHHHHHHHHHhChhhccCChHHHhhhHhhhhhhHHHHHHHHH
Confidence 99999999999999999989999999999999999999999998 5999999 999999973
No 4
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=99.97 E-value=3e-30 Score=203.30 Aligned_cols=133 Identities=26% Similarity=0.331 Sum_probs=123.1
Q ss_pred chHhHHHHHHHHHHhCCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCCCCccchHHHHHhhCCC-----c-chH
Q psy7075 2 KTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPR-----M-TAY 75 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~~~~~~IGdvfl~~~~~-----~-~~Y 75 (135)
+|+++.++|+.|+...+++++++++.||+|+++|+++|+.|+.+|+.+...+ +...+.||++|+++++. | ++|
T Consensus 45 ~L~~l~~~y~~~l~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~-~~~~~~ig~~fl~~~~~~~~~~~~~~Y 123 (377)
T 3p6a_A 45 MLRVLHDLFFQPMAECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQES-GYLIEEIGDVLLARFDGAEGSWFQKIS 123 (377)
T ss_dssp HHHHHHHHTHHHHHHHTSSCHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcCCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHhcc-CCCCCcHHHHHHHHhcchhhHHHHHHH
Confidence 5899999999999999999999999999999999999999999999886655 34478999999999985 4 899
Q ss_pred HHhhhcHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075 76 VRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEIV 135 (135)
Q Consensus 76 ~~Yc~n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~ 135 (135)
..||+||+.|..+++++.++|+.|++|+++|+.+|.|++++|.+ ++|+||+ |++||++|.
T Consensus 124 ~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~ll 187 (377)
T 3p6a_A 124 SRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIG 187 (377)
T ss_dssp HHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 5999999 999999973
No 5
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=99.96 E-value=5.2e-30 Score=202.83 Aligned_cols=133 Identities=21% Similarity=0.250 Sum_probs=121.6
Q ss_pred chHhHHHHHHHHHHhCCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcC-CCCccchHHHHHhhCCC-----c-ch
Q psy7075 2 KTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSS-KGDIRMIGDILCEHLPR-----M-TA 74 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~-~~~~~~IGdvfl~~~~~-----~-~~ 74 (135)
+|+++.++|+.||...+++++++++.||+|+++|+++| .|+.+|+.+...++ +...+.||++|+++++. | ++
T Consensus 42 ~L~~l~~~f~~~l~~~~~l~~~~~~~iF~ni~~I~~~h-~fL~~l~~~~~~~~~~~~~~~ig~~fl~~~~~~~~~~f~~~ 120 (385)
T 1txd_A 42 TLKVLDQVFYQRVSREGILSPSELRKIFSNLEDILQLH-IGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHA 120 (385)
T ss_dssp HHHHHHHHTHHHHHHHTCSCHHHHHHHHTTHHHHHHHH-HHHHHHHHHHHTTCTTCCCCCCHHHHHHHHSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHHHHhhcCCCcccHHHHHHHHccchhHHHHHHH
Confidence 58999999999999999999999999999999999999 99999998643332 34478999999999863 5 99
Q ss_pred HHHhhhcHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075 75 YVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEIV 135 (135)
Q Consensus 75 Y~~Yc~n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~ 135 (135)
|..||+||+.|..++++++++|+.|++|+++|+.+|.|++++|.+ ++|+||+ |++||++|+
T Consensus 121 Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~ll 185 (385)
T 1txd_A 121 AATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIA 185 (385)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHHSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHchHHHHHHHHHHHhcCHHHHHHHHHHHhCccccCCChHHHhhhHHhHhhhHHHHHHHHH
Confidence 999999999999999999889999999999999999999999999 5999999 999999973
No 6
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1
Probab=99.96 E-value=1.4e-30 Score=191.30 Aligned_cols=128 Identities=22% Similarity=0.339 Sum_probs=117.5
Q ss_pred chHhHHHHHHHHHHhCCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCCCCccchHHHHHhhCCCcc-hHHHhhh
Q psy7075 2 KTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRMT-AYVRFCS 80 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~~~~~~IGdvfl~~~~~~~-~Y~~Yc~ 80 (135)
+|+++.++|+.|+...+++++++++.||||+++|+++|+.|+.+|+.+...| ...+.||++|+++.+.|+ +|..||+
T Consensus 31 ~L~~l~~~y~~pl~~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~--~~~~~ig~~f~~~~~~f~~~Y~~Y~~ 108 (209)
T 1by1_A 31 ELQTVLSTYLRPLQTSEKLSSANISYLMGNLEEICSFQQMLVQSLEECTKLP--EAQQRVGGCFLNLMPQMKTLYLTYCA 108 (209)
T ss_dssp HHHHHHHHHHHHHTTTSSSSSSGGGTTHHHHHHHHHHHHHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999998999999999999999999999999999999986655 347899999999999995 9999999
Q ss_pred cHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075 81 CQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEIV 135 (135)
Q Consensus 81 n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~ 135 (135)
||+.|.++++++ ++.|++|++.|+. +.|++++|.+ ++|+||+ |++||++|+
T Consensus 109 n~~~a~~~l~~~---~~~f~~fl~~~~~-~~~~~l~L~s~Li~PvQRi~rY~LLL~~Ll 163 (209)
T 1by1_A 109 NHPSAVNVLTEH---SEELGEFMETKGA-SSPGILVLTTGLSKPFMRLDKYPTLLKELE 163 (209)
T ss_dssp HHHHHHHHHHHH---TTTHHHHTTTTCC-CSSTTTHHHHHTTSTTTGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CHHHHHHHHHhcC-CCCCcCCHHHHhhHHHHHHhHHHHHHHHHH
Confidence 999999999987 6899999999854 6788999998 5999999 999999973
No 7
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=99.96 E-value=1.7e-29 Score=201.58 Aligned_cols=132 Identities=21% Similarity=0.334 Sum_probs=123.4
Q ss_pred chHhHHHHHHHHHHhCCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCCCCccchHHHHHhhCCCc------chH
Q psy7075 2 KTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRM------TAY 75 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~~~~~~IGdvfl~~~~~~------~~Y 75 (135)
+|+++.++|+.||...+++++++++.||+|+++|+++|+.|+.+|+.+...+ ...+.||++|+++++.+ ++|
T Consensus 81 ~L~~l~~~y~~~l~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~--~~~~~ig~ifl~~~~~~~~~~~~~~Y 158 (418)
T 3t06_A 81 TLRVLDLIFYQRMKKENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEG--PIIKEISDLMLARFDGPAREELQQVA 158 (418)
T ss_dssp HHHHHHHHTHHHHHHTTSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHGGGC--SSCCCCHHHHHHHHSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHhcC--CCcCcHHHHHHHhcchhhhHHHhhhh
Confidence 5899999999999999999999999999999999999999999999875443 45789999999999874 899
Q ss_pred HHhhhcHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075 76 VRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEIV 135 (135)
Q Consensus 76 ~~Yc~n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~ 135 (135)
..||+||+.|..+++++.++|+.|++|+++|+.+|.|++++|.+ ++|+||+ |++||++|+
T Consensus 159 ~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~ll 222 (418)
T 3t06_A 159 AQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESII 222 (418)
T ss_dssp HHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHhCcccccCCHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999989999999999999999999999998 5999999 999999973
No 8
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=99.96 E-value=1.3e-29 Score=201.81 Aligned_cols=129 Identities=22% Similarity=0.327 Sum_probs=121.4
Q ss_pred chHhHHHHHHHHHHhCCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCCCCccchHHHHHhhCCCcchHHHhhhc
Q psy7075 2 KTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRMTAYVRFCSC 81 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~~~~~~IGdvfl~~~~~~~~Y~~Yc~n 81 (135)
+|+++.++|+.||. +++++++++.||+|+++|+++|+.|+.+|+++...| ..+.||++|+++.+.|++|..||+|
T Consensus 43 ~L~~l~~~f~~~l~--~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~---~~~~ig~~f~~~~~~~~~Y~~Y~~n 117 (406)
T 2vrw_B 43 TLGSIQQHFMKPLQ--RFLKPQDMETIFVNIEELFSVHTHFLKELKDALAGP---GATTLYQVFIKYKERFLVYGRYCSQ 117 (406)
T ss_dssp HHHHHHHHTHHHHT--TTSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSG---GGTTHHHHHHHHTTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HhCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999998 689999999999999999999999999999986544 2678999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075 82 QLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEIV 135 (135)
Q Consensus 82 ~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~ 135 (135)
++.|..+++++.++|+.|++|+++|+.+|.|++++|.+ ++|+||+ |++||+||+
T Consensus 118 ~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~ll 175 (406)
T 2vrw_B 118 VESASKHLDQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELV 175 (406)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTSCCHHHHTTHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhccccCCcchHHHhhhHHHHHhhHHHHHHHHH
Confidence 99999999999989999999999999999999999998 5999999 999999973
No 9
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=99.96 E-value=3.2e-29 Score=199.76 Aligned_cols=132 Identities=20% Similarity=0.349 Sum_probs=120.9
Q ss_pred chHhHHHHHHHHHHh-CCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCCCCccchHHHHHhhCCCcchHHHhhh
Q psy7075 2 KTILCRQVFEKPLKE-SKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRMTAYVRFCS 80 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~-~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~~~~~~IGdvfl~~~~~~~~Y~~Yc~ 80 (135)
+|+++.++|+.|+.. .+++++++++.||||+++|+++|+.|+.+|+.+...+ ++..+.||++|+++.+.|++|..||+
T Consensus 59 ~L~~l~~~y~~pl~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~~~~-~~~~~~ig~ifl~~~~~f~~Y~~Y~~ 137 (402)
T 2dfk_A 59 HLKDICEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNND-DPHLSEIGPCFLEHQDGFWIYSEYCN 137 (402)
T ss_dssp HHHHHHHHTHHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCSS-CGGGCCCHHHHHHTTTGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHccC-CCchhhHHHHHHHHHhhhHHHHHHHH
Confidence 588999999999985 5899999999999999999999999999999875433 23367999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075 81 CQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEIV 135 (135)
Q Consensus 81 n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~ 135 (135)
|++.|..+++++. ++++|++|++.|+..|.|++++|.+ ++|+||+ |++||+||+
T Consensus 138 n~~~a~~~l~~~~-~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Ll 195 (402)
T 2dfk_A 138 NHLDACMELSKLM-KDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELL 195 (402)
T ss_dssp HHHHHHHHHHHHT-TSHHHHHHHHHHHHHTTCCSCCHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH-cChHHHHHHHHHHhhhhcccCCHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999998 5899999999999999999999998 5999999 999999973
No 10
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=99.96 E-value=1.4e-29 Score=199.91 Aligned_cols=132 Identities=20% Similarity=0.284 Sum_probs=119.9
Q ss_pred chHhHHHHHHHHHHhCCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCCC-----------CccchHHHHHhhCC
Q psy7075 2 KTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKG-----------DIRMIGDILCEHLP 70 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~~-----------~~~~IGdvfl~~~~ 70 (135)
+|+++.++|+.||...+++++++++.||||+++|+++|+.|+.+|+++...|++. ....||++|+.+.+
T Consensus 29 ~L~~l~~~y~~pl~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~~~~~~~~~~~~~~ig~~f~~~~~ 108 (377)
T 1foe_A 29 DLNCLMERYLKPLQKETFLTQDELDVLFGNLTEMVEFQVEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYAD 108 (377)
T ss_dssp HHHHHHHHTHHHHHTSSSSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSSCGGGCCSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999987655331 13579999999999
Q ss_pred CcchHHHhhhcHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075 71 RMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEIV 135 (135)
Q Consensus 71 ~~~~Y~~Yc~n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~ 135 (135)
.|++|..||+||+.|..++++++ +|+.|++|+++|+..+ |++++|.+ ++|+||+ |++||+||.
T Consensus 109 ~f~~Y~~Y~~n~~~a~~~l~~~~-~~~~f~~fl~~~~~~~-~~~l~L~s~Li~PvQRi~rY~LLL~~ll 175 (377)
T 1foe_A 109 RFKLYSAFCASHTKVPKVLVKAK-TDTAFKAFLDAQNPRQ-QHSSTLESYLIKPIQRVLKYPLLLRELF 175 (377)
T ss_dssp GGGGHHHHHHHTTTHHHHHTTTT-TCHHHHHHHHHHCTTC-CGGGSHHHHTTHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHh-cCHHHHHHHHHHhhcc-ccCcCHHHHhccchhhhccHHHHHHHHH
Confidence 99999999999999999999974 8999999999998765 89999998 5999999 999999973
No 11
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=99.96 E-value=6.8e-29 Score=204.46 Aligned_cols=133 Identities=26% Similarity=0.331 Sum_probs=122.5
Q ss_pred chHhHHHHHHHHHHhCCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCCCCccchHHHHHhhCCC-----c-chH
Q psy7075 2 KTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPR-----M-TAY 75 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~~~~~~IGdvfl~~~~~-----~-~~Y 75 (135)
+|+++.++|+.||...+++++++++.||+||++|+++|+.|+.+|+.+...+ +...+.||++|+++++. | ++|
T Consensus 198 ~L~~l~~~y~~pl~~~~~l~~~~~~~IF~nie~I~~~h~~fL~~L~~~~~~~-~~~~~~Igdifl~~~~~~~~~~f~~~Y 276 (536)
T 3odw_A 198 MLRVLHDLFFQPMAECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQES-GYLIEEIGDVLLARFDGAEGSWFQKIS 276 (536)
T ss_dssp HHHHHHHHTHHHHHHTTSSCHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTC----CCCCHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc-CcccccHHHHHHHHcchhhhHHHHHHH
Confidence 5899999999999999999999999999999999999999999999976554 34478999999999984 4 899
Q ss_pred HHhhhcHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075 76 VRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEIV 135 (135)
Q Consensus 76 ~~Yc~n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~ 135 (135)
..||+||+.|..++++++++|+.|++|+++|+.+|.|++|+|.+ ++|+||+ |++||++|+
T Consensus 277 ~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Ll 340 (536)
T 3odw_A 277 SRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIG 340 (536)
T ss_dssp HHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTTSGGGTTCCHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhCHHHHHHHHHHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 5999999 999999973
No 12
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=4.8e-29 Score=199.67 Aligned_cols=132 Identities=14% Similarity=0.045 Sum_probs=117.0
Q ss_pred chHhHHHHHHHHHHh---------CCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCCCCccchHHHHHhhCCCc
Q psy7075 2 KTILCRQVFEKPLKE---------SKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRM 72 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~---------~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~~~~~~IGdvfl~~~~~~ 72 (135)
+|+++.++|+.||.+ .+++++++++.||+|+++|+++|+.|+.+|+.+...| ...+.||++|+++.+.|
T Consensus 40 ~L~~l~~~f~~pl~~~l~~~~~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~~~~--~~~~~ig~ifl~~~~~~ 117 (434)
T 3mpx_A 40 MLQHLNLDFHGAVMRALDDMDHEGRDTLAREELRQGLSELPAIHDLHQGILEELEERLSNW--ESQQKVADVFLAREQGF 117 (434)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCCCTHHHHTTTTTH
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhc--cCcccHHHHHHHhhHHH
Confidence 589999999999975 3789999999999999999999999999999987665 34789999999999999
Q ss_pred chHHHhhhcHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075 73 TAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEIV 135 (135)
Q Consensus 73 ~~Y~~Yc~n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~ 135 (135)
++|..||+||+.|..+++++.++|+.|++|+++|+.+|.|++++|.+ ++|+||+ |++||++|+
T Consensus 118 ~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~ll 184 (434)
T 3mpx_A 118 DHHATHILQFDRYLGLLSENCLHSPRLAAAVREFEQSVQGGSQTAKHRLLRVVQRLFQYQVLLTDYL 184 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHcCcccCCCCHHHHHhhhHHhhhHHHHHHHHHH
Confidence 99999999999999999999989999999999999999999999999 4999999 999999973
No 13
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=99.95 E-value=1.1e-28 Score=193.28 Aligned_cols=133 Identities=13% Similarity=0.168 Sum_probs=118.5
Q ss_pred chHhHHHHHHHHHHhC-CCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCC-CCccchHHHHHhhCC--CcchHHH
Q psy7075 2 KTILCRQVFEKPLKES-KILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSK-GDIRMIGDILCEHLP--RMTAYVR 77 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~~-~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~-~~~~~IGdvfl~~~~--~~~~Y~~ 77 (135)
+|+++.++|+.||... +++++++++.||||+++|+++|+.|+.+|+++...+.+ +..+.||++|+++.+ .|++|..
T Consensus 21 ~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~~~~f~~Y~~ 100 (354)
T 1dbh_A 21 ELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYES 100 (354)
T ss_dssp HHHHHHHTTTHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCTTSSSCCCHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHhHHhhhhHHHH
Confidence 5899999999999976 58999999999999999999999999999998665532 334899999999999 7899999
Q ss_pred hhhcH--HHHHHHHHHHHhcCHhHHHHHHH-HhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075 78 FCSCQ--LSAAALLQKLTDQSPEFKTISKK-CRWISRIFLLETET--ISPLLKL--ISPLLKEIV 135 (135)
Q Consensus 78 Yc~n~--~~A~~~L~~l~~~n~~F~~fl~~-~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~ 135 (135)
||+|| +.|.++++++. +||+|+.|+++ |+..|.|++++|.+ ++|+||+ |++||++|.
T Consensus 101 Y~~n~~~~~a~~~l~~~~-~~~~f~~~l~~~~~~~~~~~~~~L~~~Li~PvQRi~rY~LLL~~ll 164 (354)
T 1dbh_A 101 YARDILRPGFHDRFLSQL-SKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLE 164 (354)
T ss_dssp HHHHHTSTTHHHHHHHHH-HSTTHHHHHHHHCTTHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHh-cChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhchHHHHHHHHH
Confidence 99999 55679999996 89999999998 55578899999998 5999999 999999973
No 14
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=99.95 E-value=3.1e-28 Score=196.91 Aligned_cols=132 Identities=19% Similarity=0.404 Sum_probs=120.6
Q ss_pred chHhHHHHHHHHHHh-CCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCCCCccchHHHHHhhCCCcchHHHhhh
Q psy7075 2 KTILCRQVFEKPLKE-SKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRMTAYVRFCS 80 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~-~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~~~~~~IGdvfl~~~~~~~~Y~~Yc~ 80 (135)
+|+++.++|+.|+.. .+++++++++.||+|+++|+++|+.|+.+|+.+...+ +.....||++|+++.+.|++|..||+
T Consensus 136 ~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~~~~-~~~~~~ig~~fl~~~~~f~~Y~~Y~~ 214 (466)
T 2pz1_A 136 HLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRE-RPHLSELGACFLEHQADFQIYSEYCN 214 (466)
T ss_dssp HHHHHHHHTHHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCSS-CGGGCCCHHHHHHTHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHccC-CCccchHHHHHHHhhHHHHHHHHHHH
Confidence 588999999999975 4899999999999999999999999999999875433 23367999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075 81 CQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEIV 135 (135)
Q Consensus 81 n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~ 135 (135)
||+.|..+++++. ++++|++|++.|+..+.|++++|.+ ++|+||+ |++||+||+
T Consensus 215 n~~~a~~~l~~~~-~~~~f~~f~~~~~~~~~~~~l~L~~~Li~PvQRi~rY~LLL~~ll 272 (466)
T 2pz1_A 215 NHPNACVELSRLT-KLSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELL 272 (466)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH-hccHHHHHHHHHHHhhhhccCCHHHHhhhHHHHhhhHHHHHHHHH
Confidence 9999999999998 5889999999999999999999999 5999999 999999973
No 15
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.95 E-value=1.7e-29 Score=205.28 Aligned_cols=134 Identities=42% Similarity=0.672 Sum_probs=0.0
Q ss_pred chHhHHHHHHHHHHhCCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCC-CCccchHHHHHhhCCCcchHHHhhh
Q psy7075 2 KTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSK-GDIRMIGDILCEHLPRMTAYVRFCS 80 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~-~~~~~IGdvfl~~~~~~~~Y~~Yc~ 80 (135)
+|+++.++|+.|+...+++++++++.||+|+++|+++|+.|+.+|+.+.+.+++ ...+.||++|+.+++.|++|..||+
T Consensus 45 ~L~~l~~~y~~~l~~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~~~~~~~~ig~~f~~~~~~~~~Y~~Y~~ 124 (510)
T 3jzy_A 45 DLQLVVEVFQKRMAESGFLTEGEMALIFVNWKELIMSNTKLLKALRVRKKTGGEKMPVQMIGDILAAELSHMQAYIRFCS 124 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHhHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999988665432 2368999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCCc--cchHHH--HHHHHhhhC
Q psy7075 81 CQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETETI--SPLLKL--ISPLLKEIV 135 (135)
Q Consensus 81 n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~~--~p~~~~--~~~~~~~~~ 135 (135)
|++.|.++++++.++|+.|++|+++|+.+|.|++++|.++ +|+||+ |++||++|.
T Consensus 125 ~~~~a~~~l~~~~~~~~~f~~~~~~~~~~~~~~~l~L~~~L~~PvQRi~rY~LLL~~ll 183 (510)
T 3jzy_A 125 CQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIRSIL 183 (510)
T ss_dssp -----------------------------------------------------------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHhCccccCCCHHHHhChhhhhhcCcHHHHHHHH
Confidence 9999999999999999999999999999999999999995 899999 999999974
No 16
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=99.94 E-value=1.2e-27 Score=198.65 Aligned_cols=129 Identities=19% Similarity=0.323 Sum_probs=121.7
Q ss_pred chHhHHHHHHHHHHhCCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCCCCccchHHHHHhhCCCcchHHHhhhc
Q psy7075 2 KTILCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRMTAYVRFCSC 81 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~~~~~~IGdvfl~~~~~~~~Y~~Yc~n 81 (135)
+|+++.++|+.||. +++++++++.||+|+++|+++|+.|+.+|+.+...+ ..+.||++|+++.+.|++|..||+|
T Consensus 215 ~L~~l~~~y~~~L~--~~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~~~~---~~~~ig~if~~~~~~f~~Y~~Y~~n 289 (587)
T 3ky9_A 215 TLGSIQQHFLKPLQ--RFLKPQDIEIIFINIEDLLRVHTHFLKEMKEALGTP---GAANLYQVFIKYKERFLVYGRYCSQ 289 (587)
T ss_dssp HHHHHHHHTHHHHH--TTSCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTCSHHHHHHHTTTGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HhCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhcc---CccHHHHHHHHHHHhcchHHHHHhC
Confidence 58999999999999 699999999999999999999999999999986654 2679999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCCc--cchHHH--HHHHHhhhC
Q psy7075 82 QLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETETI--SPLLKL--ISPLLKEIV 135 (135)
Q Consensus 82 ~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~~--~p~~~~--~~~~~~~~~ 135 (135)
++.|..+++++.++|+.|++|+++|+..|.|++++|.++ +|+||+ |++||++|.
T Consensus 290 ~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Ll 347 (587)
T 3ky9_A 290 VESASKHLDRVAAAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELV 347 (587)
T ss_dssp HHHHHHHHHHHHHTCHHHHTTTTHHHHHHHSSSCCHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccccCCCCHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999994 999999 999999973
No 17
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.92 E-value=6.2e-26 Score=198.49 Aligned_cols=133 Identities=13% Similarity=0.168 Sum_probs=120.9
Q ss_pred chHhHHHHHHHHHHhC-CCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCC-CCccchHHHHHhhCC--CcchHHH
Q psy7075 2 KTILCRQVFEKPLKES-KILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSK-GDIRMIGDILCEHLP--RMTAYVR 77 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~~-~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~-~~~~~IGdvfl~~~~--~~~~Y~~ 77 (135)
+|+++.++|+.||... +++++++++.|||||++|+++|+.|+.+|+.+...+++ +..+.||++|+++++ .|++|..
T Consensus 218 ~L~~l~~~y~~pL~~~~~~l~~~~~~~IF~Ni~~I~~~h~~fL~~Le~~~~~~~~~~~~~~IgdiFl~~~~~~~F~~Y~~ 297 (1049)
T 3ksy_A 218 ELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYES 297 (1049)
T ss_dssp HHHHHHHTTHHHHHHCTTTSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHCCSSSSSCCCHHHHHHHHHTTTTSHHHH
T ss_pred HHHHHHHHHHHHHHhCccCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHHHhhhhHHHH
Confidence 5899999999999987 78999999999999999999999999999998776533 336899999999966 6799999
Q ss_pred hhhcH--HHHHHHHHHHHhcCHhHHHHHHH-HhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075 78 FCSCQ--LSAAALLQKLTDQSPEFKTISKK-CRWISRIFLLETET--ISPLLKL--ISPLLKEIV 135 (135)
Q Consensus 78 Yc~n~--~~A~~~L~~l~~~n~~F~~fl~~-~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~ 135 (135)
||+|| +.|..+++++. +|+.|++|+++ |+..|.|++|+|.+ ++|+||+ |++||++|.
T Consensus 298 Yc~ny~~~~a~~~l~~l~-~~~~f~~fl~~~~~~~~~~~~l~L~s~LikPvQRI~rY~LLL~~Ll 361 (1049)
T 3ksy_A 298 YARDILRPGFHDRFLSQL-SKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLE 361 (1049)
T ss_dssp HHHHHHCTTHHHHHHTTS-SSTTHHHHHHHHCTTHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHh-cChHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHhHHHHHHHHHH
Confidence 99996 88999999999 89999999999 77779999999998 5999999 999999973
No 18
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=99.92 E-value=2.1e-25 Score=175.03 Aligned_cols=123 Identities=17% Similarity=0.378 Sum_probs=107.2
Q ss_pred chHhHHHHHHHHHHhCC---CCCH---HhHhcccCChHHHHHHHH-HHHHHHHHHHhhcCCCCccchHHHHHhhCCCcch
Q psy7075 2 KTILCRQVFEKPLKESK---ILTR---EEHGQIFVNWKEIIVCNH-MFLRALRVRRDMSSKGDIRMIGDILCEHLPRMTA 74 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~~~---il~~---~~~~~iF~NieeI~~~~~-~fl~~L~~r~~~~~~~~~~~IGdvfl~~~~~~~~ 74 (135)
+|+++.++|+.||...+ ++++ ++++.||||+++|+++|. .|+.+|+.+... .+.||++|+++.+.|++
T Consensus 29 ~L~~l~~~y~~pl~~~~~~~~~p~~~~~~~~~iF~ni~~I~~~h~~~fl~~Le~~~~~-----~~~ig~~fl~~~~~f~~ 103 (353)
T 1kz7_A 29 ELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELESCIDC-----PELVGRCFLERMEEFQI 103 (353)
T ss_dssp HHHHHHHHTTGGGGCTTTTTTSCHHHHHTHHHHHTTHHHHHHHHHHTHHHHHHTTTTC-----GGGHHHHHHTTTTGGGH
T ss_pred HHHHHHHHHHHHHhccccccCCChhhhhhHHHHHhCHHHHHHHHHHHHHHHHHHHhcC-----HHHHHHHHHHhhHHHHH
Confidence 58999999999998764 7786 589999999999999996 899999976322 36899999999999999
Q ss_pred HHHhhhcHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075 75 YVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEIV 135 (135)
Q Consensus 75 Y~~Yc~n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~ 135 (135)
|..||+|++.|..+++++. ++ .|+++|+..+ |++++|.+ ++|+||+ |++||+||.
T Consensus 104 Y~~Y~~n~~~a~~~l~~~~-~~----~f~~~~~~~~-~~~l~L~~~Li~PvQRi~rY~LLL~~ll 162 (353)
T 1kz7_A 104 YEKYCQNKPRSESLWRQCS-DC----PFFQECQKKL-DHKLSLDSYLLKPVQRITKYQLLLKEML 162 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TC----HHHHHHHHHH-TCSSCHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHhh-cc----hHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 44 5667777654 89999999 5999999 999999973
No 19
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=99.91 E-value=2.4e-24 Score=166.15 Aligned_cols=122 Identities=16% Similarity=0.264 Sum_probs=103.7
Q ss_pred chHhHHHHHHHHHHhC-CCCCH---HhHhcccCChHHHHHHHHH-HHHHHHHHHhhcCCCCccchHHHHHhhCCCcchHH
Q psy7075 2 KTILCRQVFEKPLKES-KILTR---EEHGQIFVNWKEIIVCNHM-FLRALRVRRDMSSKGDIRMIGDILCEHLPRMTAYV 76 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~~-~il~~---~~~~~iF~NieeI~~~~~~-fl~~L~~r~~~~~~~~~~~IGdvfl~~~~~~~~Y~ 76 (135)
+|+++.++|+.|+... +.+++ ++++.||||+++|+++|+. |+.+|+.+.. ..+.||++|+++.+.|++|.
T Consensus 27 ~L~~l~~~y~~~l~~~~~~l~~~~~~~~~~iF~ni~~i~~~h~~~fl~~L~~~~~-----~~~~ig~~f~~~~~~~~~Y~ 101 (311)
T 1nty_A 27 DLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQ-----LPEDVGHCFVTWADKFQMYV 101 (311)
T ss_dssp HHHHHHHHHHHHHHHCCSCCCTTTTTCHHHHHTTHHHHHHHHHHTHHHHHHHTTT-----CGGGTHHHHHHTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCChhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHhHHHH
Confidence 5889999999999874 55665 4789999999999999996 9999997632 24689999999999999999
Q ss_pred HhhhcHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075 77 RFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEIV 135 (135)
Q Consensus 77 ~Yc~n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~ 135 (135)
.||+||+.|..++++.. ..|++.|+..+. .+++|.+ ++|+||+ |++||+||.
T Consensus 102 ~Y~~n~~~a~~~l~~~~------~~f~~~~~~~~~-~~l~L~~~Li~PvQRi~rY~LLL~~ll 157 (311)
T 1nty_A 102 TYCKNKPDSTQLILEHA------GSYFDEIQQRHG-LANSISSYLIKPVQRITKYQLLLKELL 157 (311)
T ss_dssp HHHHHHHHHHHHHHHHT------TTHHHHHHHHHT-CSSCHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHH------HHHHHHHHHhcc-CCCCHHHHhhhhHHHHHHHHHHHHHHH
Confidence 99999999999997643 356677777765 4799998 5999999 999999973
No 20
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=99.90 E-value=3.9e-24 Score=167.88 Aligned_cols=122 Identities=16% Similarity=0.258 Sum_probs=103.3
Q ss_pred chHhHHHHHHHHHHhCCCCC--HHhHhcccCChHHHHHHHHH-HHHHHHHHHhhcCCCCccchHHHHHhhCCCcchHHHh
Q psy7075 2 KTILCRQVFEKPLKESKILT--REEHGQIFVNWKEIIVCNHM-FLRALRVRRDMSSKGDIRMIGDILCEHLPRMTAYVRF 78 (135)
Q Consensus 2 ~L~~l~~~F~~pl~~~~il~--~~~~~~iF~NieeI~~~~~~-fl~~L~~r~~~~~~~~~~~IGdvfl~~~~~~~~Y~~Y 78 (135)
+|+++.++|+.||...++.+ .++++.||+|+++|+++|+. |+.+|+.+... .+.||++|+++.+.|++|..|
T Consensus 30 ~L~~l~~~y~~~l~~~~~p~~l~~~~~~iF~ni~~I~~~h~~~fl~~L~~~~~~-----~~~ig~~fl~~~~~f~~Y~~Y 104 (354)
T 2rgn_B 30 DLGQIVEGYMATMAAQGVPESLRGRDRIVFGNIQQIYEWHRDYFLQELQRCLKD-----PDWLAQLFIKHERRLHMYVVY 104 (354)
T ss_dssp HHHHHHTTHHHHHHHHCCCSSSGGGHHHHHTTHHHHHHHHHHTHHHHHHHHHSC-----GGGHHHHHHHTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHcC-----HHHHHHHHHHhHHHHHHHHHH
Confidence 58899999999999876422 35689999999999999999 99999987432 358999999999999999999
Q ss_pred hhcHHHHHHHHHHHHhcCHhHHHHHHHHhccccccCccCCC--ccchHHH--HHHHHhhhC
Q psy7075 79 CSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETET--ISPLLKL--ISPLLKEIV 135 (135)
Q Consensus 79 c~n~~~A~~~L~~l~~~n~~F~~fl~~~~~~p~c~~L~L~~--~~p~~~~--~~~~~~~~~ 135 (135)
|+||+.|..+++++. ++.|++ |.. +.|++++|.+ ++|+||+ |++||+||+
T Consensus 105 ~~n~~~a~~~l~~~~--~~~f~~----~~~-~~~~~l~L~s~Li~PvQRi~rY~LLL~~ll 158 (354)
T 2rgn_B 105 CQNKPKSEHVVSEFG--DSYFEE----LRQ-QLGHRLQLNDLLIKPVQRIMKYQLLLKDFL 158 (354)
T ss_dssp HHTSHHHHHHHTTTS--HHHHHH----HHH-HHCCSSCHHHHTTHHHHHHTSHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHH--HHHHHH----HHH-hcCCCCCHHHHhhhHHHHHhHHHHHHHHHH
Confidence 999999999998875 244444 443 5689999998 5999999 999999973
No 21
>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}
Probab=89.61 E-value=0.94 Score=34.49 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=62.9
Q ss_pred HHHHHHHhCCCCCHHhHhcccCChHHHHHHHHHHHHHHHHHHhhcCCCCccchHHHHHhhCCCcchHHHhhhcHHHHHHH
Q psy7075 9 VFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRMTAYVRFCSCQLSAAAL 88 (135)
Q Consensus 9 ~F~~pl~~~~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r~~~~~~~~~~~IGdvfl~~~~~~~~Y~~Yc~n~~~A~~~ 88 (135)
-|-+-|....++.++-++.+|..|.-+++.|+.|...|++.. ....+|+-+-.-..++-.|.-|..+-+....-
T Consensus 211 efseimtkkqilgpdvlkelfdhipvliqhhqkfisslqeak------adekvgeklnsglhflvlyryylrhvpkniak 284 (518)
T 4gou_A 211 EFSEIMTKKQILGPDVLKELFDHIPVLIQHHQKFISSLQEAK------ADEKVGEKLNSGLHFLVLYRYYLRHVPKNIAK 284 (518)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHTTHHHHHHHHHHHHHHHTSTT------GGGSHHHHHHHHTGGGGGGHHHHTTTTHHHHH
T ss_pred HHHHHHHhhhccChHHHHHHHhhchHHHHHHHHHHHHHHHhh------hhHHHHHhhccCceehHHHHHHHHhccHHHHH
Confidence 355666667899999999999999999999999999998642 23578998888777888899998888876665
Q ss_pred HHHH
Q psy7075 89 LQKL 92 (135)
Q Consensus 89 L~~l 92 (135)
+-..
T Consensus 285 lcsi 288 (518)
T 4gou_A 285 LCSI 288 (518)
T ss_dssp HHHH
T ss_pred HccC
Confidence 5443
No 22
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=76.55 E-value=1.1 Score=28.31 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=32.5
Q ss_pred hHhHHHHHHHHHHhC-----CCCCHHhHhcccCChHHHHHHHHHHHHHHHHH
Q psy7075 3 TILCRQVFEKPLKES-----KILTREEHGQIFVNWKEIIVCNHMFLRALRVR 49 (135)
Q Consensus 3 L~~l~~~F~~pl~~~-----~il~~~~~~~iF~NieeI~~~~~~fl~~L~~r 49 (135)
|..=+++|.+.|+.. ++-++..++++|-++..+..-=.....+++++
T Consensus 9 l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~ 60 (98)
T 3f1i_H 9 LQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDER 60 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578899998865 68888899999999876644444444455554
No 23
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=43.43 E-value=59 Score=20.35 Aligned_cols=78 Identities=14% Similarity=-0.025 Sum_probs=47.3
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhhcCCCCccchHHHHHhhCCC-----cchHHHhhhcHHHHHHHHHHHHh--cCHhHHH
Q psy7075 29 FVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPR-----MTAYVRFCSCQLSAAALLQKLTD--QSPEFKT 101 (135)
Q Consensus 29 F~NieeI~~~~~~fl~~L~~r~~~~~~~~~~~IGdvfl~~~~~-----~~~Y~~Yc~n~~~A~~~L~~l~~--~n~~F~~ 101 (135)
|..++++ +-|+.++..+..+.+.. -.+..|-+-+..+... ..+-..--+|...|..+|+.+.+ +.--|+.
T Consensus 4 ~~~~e~~-ee~r~lL~~~~p~l~~~--I~p~~IL~~L~~~L~~~d~E~I~a~~~~~G~~~aa~~LL~~L~r~~~~gWf~~ 80 (100)
T 2lwd_A 4 MKKIEKL-EEYRLLLKRLQPEFKTR--IIPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKT 80 (100)
T ss_dssp -CCHHHH-HHHHHHHHHTHHHHHHH--CCTTTTHHHHTTTSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCTHHHHH
T ss_pred HHHHHhh-HHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHCCHHHHHHHHHHHHccChHHHHHHHHHHHHhcCcCCcHHH
Confidence 3344443 55777777777765432 1122333322223321 34556666788889999999986 4458999
Q ss_pred HHHHHhcc
Q psy7075 102 ISKKCRWI 109 (135)
Q Consensus 102 fl~~~~~~ 109 (135)
|+...+.+
T Consensus 81 fl~AL~~~ 88 (100)
T 2lwd_A 81 LKLALEKE 88 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99988764
No 24
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=43.28 E-value=29 Score=16.72 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy7075 33 KEIIVCNHMFLRALRVRRD 51 (135)
Q Consensus 33 eeI~~~~~~fl~~L~~r~~ 51 (135)
-+|-.+|.+|+...++..+
T Consensus 4 geiwklheeflkkfeellk 22 (32)
T 1m3w_A 4 GEIWKLHEEFLKKFEELLK 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3678889999888876543
No 25
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.53 E-value=40 Score=20.66 Aligned_cols=29 Identities=17% Similarity=0.030 Sum_probs=24.2
Q ss_pred hcHHHHHHHHHHHHhc-CHhHHHHHHHHhc
Q psy7075 80 SCQLSAAALLQKLTDQ-SPEFKTISKKCRW 108 (135)
Q Consensus 80 ~n~~~A~~~L~~l~~~-n~~F~~fl~~~~~ 108 (135)
++++.|.+++..+.++ +.+|..|+...+.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~e 80 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLED 80 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 4688899999999876 5789999988865
No 26
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=33.53 E-value=36 Score=19.15 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=15.0
Q ss_pred cCHhHHHHHHHHhccccc
Q psy7075 95 QSPEFKTISKKCRWISRI 112 (135)
Q Consensus 95 ~n~~F~~fl~~~~~~p~c 112 (135)
+||.|.+-++.+.++|..
T Consensus 19 ~dP~~~~~lq~i~~NP~~ 36 (62)
T 2lnm_A 19 QNPRVQAALMECSENPMN 36 (62)
T ss_dssp TSHHHHHHHHHHTTCGGG
T ss_pred CCHHHHHHHHHHHHCHHH
Confidence 688888888888888874
No 27
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=30.95 E-value=32 Score=24.56 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCccchHHHHHhhCCCcchHHHhhhcHHHHHHHHHHHHhcCHhH
Q psy7075 32 WKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEF 99 (135)
Q Consensus 32 ieeI~~~~~~fl~~L~~r~~~~~~~~~~~IGdvfl~~~~~~~~Y~~Yc~n~~~A~~~L~~l~~~n~~F 99 (135)
+.+..++|+.+..++-+.- .+.+.+||.-|...+.. -|.+ .+=-+.+.+++..+++++|.|
T Consensus 181 ~~d~~~lHe~~s~~~ikkY----~n~iPGiGSY~va~aa~--~yf~-lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 181 VSDSIEFHESLSPSLVKKY----MEHVPGIGSYFISNAAR--RYFN-LGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp HHHHHHHHHHCCHHHHHHH----HTSTTTHHHHHHHHHHH--HHHH-TTCHHHHHHHHHHHHHHSTTT
T ss_pred hhhHHHHHHhccHHHHHHH----HHhCCCchhHHHHHHHH--HHHh-cccchhHHHHHHHHHhcCCCc
Confidence 4456666665544443321 13366777777654332 1111 334466778888888888876
No 28
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=24.58 E-value=57 Score=19.52 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=24.2
Q ss_pred hhcHHHHHHHHHHHHhc-CHhHHHHHHHHhc
Q psy7075 79 CSCQLSAAALLQKLTDQ-SPEFKTISKKCRW 108 (135)
Q Consensus 79 c~n~~~A~~~L~~l~~~-n~~F~~fl~~~~~ 108 (135)
-++.+.|.++|+.+.++ +.+|..|++..+.
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~ 79 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLH 79 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 36788899999999766 4589999988765
No 29
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=22.52 E-value=73 Score=20.72 Aligned_cols=22 Identities=0% Similarity=0.031 Sum_probs=17.0
Q ss_pred cccccCccCCCccchHHH-HHHH
Q psy7075 109 ISRIFLLETETISPLLKL-ISPL 130 (135)
Q Consensus 109 ~p~c~~L~L~~~~p~~~~-~~~~ 130 (135)
+|....+.+....+++|+ +|.+
T Consensus 46 d~~~~~~ef~pmnSy~RllvHrv 68 (124)
T 1whr_A 46 DNNNQFKKFPQMTSYHRMLLHRV 68 (124)
T ss_dssp CSSCCEEECCCCCHHHHHHHHHH
T ss_pred CCCccceECCCCCHHHHHHHHHH
Confidence 566667888888999999 6655
No 30
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=20.88 E-value=1e+02 Score=18.76 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHhc
Q psy7075 83 LSAAALLQKLTDQSPEFKTISKKCRW 108 (135)
Q Consensus 83 ~~A~~~L~~l~~~n~~F~~fl~~~~~ 108 (135)
-.|.+-+++..++|+.|+.-++....
T Consensus 65 ~ha~~ki~~~~~~d~~~~~~i~~l~~ 90 (94)
T 1j1v_A 65 LHACRKIEQLREESHDIKEDFSNLIR 90 (94)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 45788888888899999999887754
Done!