RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7075
(135 letters)
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 70.2 bits (171), Expect = 2e-16
Identities = 56/112 (50%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Query: 5 LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMS-SKGDIRMIGD 63
L ++F+KPL ES++LT +E IFVNWKE+I+CN L+ALRVR+ MS K ++MIGD
Sbjct: 30 LVTEIFQKPLMESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGD 89
Query: 64 ILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLL 115
IL LP M Y+RFCS QL+ AAL+Q+ TD++P+FK K+ R +
Sbjct: 90 ILSAQLPHMQPYIRFCSRQLNGAALIQQKTDEAPDFKEFVKRLEMDPRCKGM 141
>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor
12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Length = 234
Score = 60.6 bits (146), Expect = 1e-12
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 6/109 (5%)
Query: 5 LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDI 64
+ QVF + + IL+ E +IF N ++I+ + ++ R + I IG+
Sbjct: 43 VLDQVFYQRVSREGILSPSELRKIFSNLEDILQLHIGLNEQMKAVRKRNETSVIDQIGED 102
Query: 65 LCEHLPR------MTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCR 107
L A FCS Q A +++ + F+T +
Sbjct: 103 LLTWFSGPGEEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAE 151
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 55.1 bits (132), Expect = 7e-11
Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 3/110 (2%)
Query: 5 LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDI 64
+ +PL+ S+ L+ + N +EI M +++L + + +G
Sbjct: 34 TVLSTYLRPLQTSEKLSSANISYLMGNLEEICSFQQMLVQSLEECTKLPE--AQQRVGGC 91
Query: 65 LCEHLPRM-TAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIF 113
+P+M T Y+ +C+ SA +L + +++ EF +
Sbjct: 92 FLNLMPQMKTLYLTYCANHPSAVNVLTEHSEELGEFMETKGASSPGILVL 141
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 54.0 bits (129), Expect = 2e-10
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 5 LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDI 64
+Q F KPL+ + L ++ IFVN +E+ + FL+ L+ + +
Sbjct: 48 SIQQHFMKPLQ--RFLKPQDMETIFVNIEELFSVHTHFLKELKDALAGP---GATTLYQV 102
Query: 65 LCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCR 107
++ R Y R+CS SA+ L ++ + + ++C
Sbjct: 103 FIKYKERFLVYGRYCSQVESASKHLDQVATAREDVQMKLEECS 145
>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion
and metastasis inducing protein 1) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 206
Score = 52.8 bits (126), Expect = 6e-10
Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 13/144 (9%)
Query: 5 LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSS---------- 54
+ + KPL++ LT++E +F N E++ FL+ L +
Sbjct: 28 CLMERYLKPLQKETFLTQDELDVLFGNLTEMVEFQVEFLKTLEDGVRLVPDLEKLEKVDQ 87
Query: 55 -KGDIRMIGDILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIF 113
K + +G + R Y FC+ +L K + + +
Sbjct: 88 FKKVLFSLGGSFLYYADRFKLYSAFCASHTKVPKVLVKAKTDTAFKAFLDAQNPRQQHSS 147
Query: 114 LLETETISPLLKL--ISPLLKEIV 135
LE+ I P+ ++ LL+E+
Sbjct: 148 TLESYLIKPIQRVLKYPLLLRELF 171
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor
11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 51.3 bits (122), Expect = 2e-09
Identities = 21/109 (19%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query: 5 LCRQVFEKPLKESKILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDI 64
+ +F + +K+ ++ REE ++F N E+I ++ + A++ R+ I+ I D+
Sbjct: 42 VLDLIFYQRMKKENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEGP--IIKEISDL 99
Query: 65 LCEHLPR------MTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCR 107
+ +FCS Q A L++ + F+ ++
Sbjct: 100 MLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAE 148
>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 49.0 bits (116), Expect = 2e-08
Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 6/109 (5%)
Query: 5 LCRQVFEKPLKES-KILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGD-IRMIG 62
L +VF +P + K+ + + IF +I + L + +M+ +G ++G
Sbjct: 24 LIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGSPHPLVG 83
Query: 63 DILCEHLPRM--TAYVRFCSCQLSAAAL--LQKLTDQSPEFKTISKKCR 107
+ + Y + L + +
Sbjct: 84 SCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGE 132
>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor
9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 203
Score = 45.9 bits (108), Expect = 1e-07
Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 5 LCRQVFEKPLKESK-ILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGD 63
+ + K ++ + + + E+ IF N ++I F+R L + + + IG
Sbjct: 35 DICEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDP-HLSEIGP 93
Query: 64 ILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISR 111
EH Y +C+ L A L KL + ++ + CR + +
Sbjct: 94 CFLEHQDGFWIYSEYCNNHLDACMELSKLM-KDSRYQHFFEACRLLQQ 140
>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 195
Score = 41.7 bits (97), Expect = 5e-06
Identities = 14/112 (12%), Positives = 37/112 (33%), Gaps = 10/112 (8%)
Query: 5 LCRQVFEKPLKES------KILTREEHGQIFVNWKEIIVCNHMFLRALRVRRDMSSKGDI 58
+ + + + + +F N +EI ++ +R S
Sbjct: 30 CVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRI----FLRELESCIDCP 85
Query: 59 RMIGDILCEHLPRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWIS 110
++G E + Y ++C + + +L ++ +D + K +S
Sbjct: 86 ELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQCSDCPFFQECQKKLDHKLS 137
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta
subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 325
Score = 27.3 bits (60), Expect = 0.53
Identities = 10/91 (10%), Positives = 26/91 (28%), Gaps = 13/91 (14%)
Query: 29 FVNWKEIIVCNHMFLRALRVRRDMSSKGDIRMIGDILCEHLPR--------MTAYVRFCS 80
+ ++ ++ L + + +++ + RF
Sbjct: 82 SIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSF 141
Query: 81 CQLSAAALLQKLTDQSPEFKTISKKCRWISR 111
C ++ ALL KL + K ++
Sbjct: 142 CAVATLALLGKLDA-----INVEKAIEFVLS 167
>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
10891]}
Length = 1264
Score = 25.3 bits (55), Expect = 3.0
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 14/69 (20%)
Query: 70 PRMTAYVRFCSCQLSAAALLQKLTDQSPEFKTI----------SKKCRWISRIFLLETET 119
PRMT+ + L A+LQ+ P + S W F+L+T++
Sbjct: 219 PRMTSAIPPLLSDLVNLAILQQTAGLDPSLVKLGVQICLHAAASSSYSW----FILKTKS 274
Query: 120 ISPLLKLIS 128
I P L S
Sbjct: 275 IFPQNTLHS 283
>d1nq7a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-beta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 244
Score = 24.7 bits (53), Expect = 4.6
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 72 MTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETETISPLLKLISPLL 131
A L KL + P + ++ + + + L PL
Sbjct: 182 YFALQHVIQKNHLDDETLAKLIAKIPTITAVCNLH--GEKLQVFKQSHPDIVNTLFPPLY 239
Query: 132 KEI 134
KE+
Sbjct: 240 KEL 242
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 24.7 bits (53), Expect = 5.0
Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 72 MTAYVRFCSCQLSAAALLQKLTDQSPEFKTISKKCRWISRIFLLETETISPLLKLISPLL 131
A +L KL + + + + ++ + + PL
Sbjct: 190 QLALQHVLQKNHREDGILTKLICKVSTLRALCGRH--TEKLMAFKAIYPDIVRLHFPPLY 247
Query: 132 KEI 134
KE+
Sbjct: 248 KEL 250
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.139 0.420
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 519,302
Number of extensions: 22925
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 22
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (22.6 bits)