BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7076
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 53/65 (81%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G EIA V + Y A+ SEQLSL+ GQLI+I KK T+GWW+GELQA+GKKRQ GWFPAS+
Sbjct: 4 GSSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASH 63
Query: 275 VKVMG 279
VK++G
Sbjct: 64 VKLLG 68
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 47 FVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RG---QTGWFPESYVEPCDETGE 100
+V+ ++LS PG +I++ +K+N GW GEL RG Q GWFP S+V+ + E
Sbjct: 16 YVASGSEQLSLAPGQLILI-LKKNTS-GWWQGELQARGKKRQKGWFPASHVKLLGPSSE 72
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEA 159
E YIA YPY S EPGDLTF + E I VT+K+ +WWTG+IGDR+G+FPSNYV P ++
Sbjct: 9 EEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIFPSNYVKPKDS 64
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
Y A+Y + S +L+F G+ I+V K W G + ++G FP +YV+P D
Sbjct: 9 EEYIALYPYSSVEPGDLTFTEGEEILVTQKDGE---WWTGSIGDRSGIFPSNYVKPKD 63
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Query: 29 STDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP 88
+ D TG + YRAI ++ +G E++ GD+ V V + +E GW +++ + GW P
Sbjct: 2 AMDITGPIILQTYRAIADYEKTSGSEMALSTGDV--VEVVEKSESGWWFCQMKAKRGWIP 59
Query: 89 ESYVEPC---DETGEVVPEY----YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTG 140
S++EP DET + P Y Y+A Y + E +++ + E + V K D WW
Sbjct: 60 ASFLEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI 119
Query: 141 TIGDRTGLFPSNYV 154
D TG FPS Y+
Sbjct: 120 RKDDVTGYFPSMYL 133
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 52/186 (27%)
Query: 95 CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNY 153
D TG ++ + Y A Y+ T ++ + +V+ V +K E+ WW + + G P+++
Sbjct: 3 MDITGPIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASF 62
Query: 154 VVPYEAQXXXXXXXXXXXXXXXXXXXXXSEXXXXXXXXXXXXXXXXPDFSSFTAAQAGTP 213
+ P ++ P++ AG P
Sbjct: 63 LEPLDS--------------------------------PDETEDPEPNY-------AGEP 83
Query: 214 KGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPAS 273
+ YTA +++SL G+ + + K GWW K G+FP+
Sbjct: 84 -------YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWW-----VIRKDDVTGYFPSM 131
Query: 274 YVKVMG 279
Y++ G
Sbjct: 132 YLQKSG 137
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 30 TDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPE 89
+D TG + YRAI ++ +G E++ GD+ V V + +E GW +++ + GW P
Sbjct: 2 SDITGPIILQTYRAIADYEKTSGSEMALSTGDV--VEVVEKSESGWWFCQMKAKRGWIPA 59
Query: 90 SYVEPC---DETGEVVPEY----YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT 141
S++EP DET + P Y Y+A Y + E +++ + E + V K D WW
Sbjct: 60 SFLEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIR 119
Query: 142 IGDRTGLFPSNYV 154
D TG FPS Y+
Sbjct: 120 KDDVTGYFPSMYL 132
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/185 (19%), Positives = 68/185 (36%), Gaps = 52/185 (28%)
Query: 96 DETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
D TG ++ + Y A Y+ T ++ + +V+ V +K E+ WW + + G P++++
Sbjct: 3 DITGPIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFL 62
Query: 155 VPYEAQXXXXXXXXXXXXXXXXXXXXXSEXXXXXXXXXXXXXXXXPDFSSFTAAQAGTPK 214
P ++ P++ AG P
Sbjct: 63 EPLDSPDETEDPE--------------------------------PNY-------AGEPY 83
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
+ YTA +++SL G+ + + K GWW K G+FP+ Y
Sbjct: 84 -------VAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWW-----VIRKDDVTGYFPSMY 131
Query: 275 VKVMG 279
++ G
Sbjct: 132 LQKSG 136
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 34 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
G S YRA+Y F +RN DE+SF GDII V K EPGWL G +G GWFP +YVE
Sbjct: 1 GSSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60
Query: 94 --PCDETGEVV 102
P E + V
Sbjct: 61 KMPSSENEKAV 71
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKTT--TGWWEGELQAKGKKRQVGWFPASYVKVM 278
L P+ A + +++S + G +I + +KT GW G Q GWFP +YV+ M
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQG-----NFGWFPCNYVEKM 62
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
Y A YP+++ +++FN ++I V +K E W G+ G FP NYV
Sbjct: 8 YRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYV 59
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 32 PTGVSEY---RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP 88
P G E+ + YRAI ++ +G E++ GD+ V V + +E GW +++ + GW P
Sbjct: 2 PLGSPEFIILQTYRAIADYEKTSGSEMALSTGDV--VEVVEKSESGWWFCQMKAKRGWIP 59
Query: 89 ESYVEPC---DETGEVVPEY----YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTG 140
S++EP DET + P Y Y+A Y + E +++ + E + V K D WW
Sbjct: 60 ASFLEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI 119
Query: 141 TIGDRTGLFPSNYV 154
D TG FPS Y+
Sbjct: 120 RKDDVTGYFPSMYL 133
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/180 (18%), Positives = 65/180 (36%), Gaps = 52/180 (28%)
Query: 101 VVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA 159
++ + Y A Y+ T ++ + +V+ V +K E+ WW + + G P++++ P ++
Sbjct: 9 IILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDS 68
Query: 160 QXXXXXXXXXXXXXXXXXXXXXSEXXXXXXXXXXXXXXXXPDFSSFTAAQAGTPKGKKPE 219
P++ AG P
Sbjct: 69 --------------------------------PDETEDPEPNY-------AGEP------ 83
Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG 279
+ YTA +++SL G+ + + K GWW K G+FP+ Y++ G
Sbjct: 84 -YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWW-----VIRKDDVTGYFPSMYLQKSG 137
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 32 PTGVSEY---RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP 88
P G E+ + YRAI ++ +G E++ GD+ V V + +E GW +++ + GW P
Sbjct: 2 PLGSPEFIILQTYRAIADYEKTSGSEMALSTGDV--VEVVEKSESGWWFCQMKAKRGWIP 59
Query: 89 ESYVEPC---DETGEVVPEY----YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTG 140
S++EP DET + P Y Y+A Y + E +++ + E + V K D WW
Sbjct: 60 ASFLEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI 119
Query: 141 TIGDRTGLFPSNYV 154
D TG FPS Y+
Sbjct: 120 RKDDVTGYFPSMYL 133
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 222 TVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG 279
+ YTA +++SL G+ + + K GWW K G+FP+ Y++ G
Sbjct: 85 VAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWW-----VIRKDDVTGYFPSMYLQKSG 137
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 83 QTGWFPESYVEPCDETGE-VVPEYY-----IAAYPYDSTEPGDLTFNQDEVIYVTKKEN- 135
Q GWFP S+V+ + E P ++ IA Y Y + +L+F++ ++I V K++
Sbjct: 8 QKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDP 67
Query: 136 DWWTGTIGDRTGLFPSNYV 154
DWW G I TGLFPSNYV
Sbjct: 68 DWWQGEINGVTGLFPSNYV 86
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
A+Y++ + N DELSF G +I V K +P W GE+ G TG FP +YV+
Sbjct: 39 AMYDYAANNEDELSFSKGQLINVMNKD--DPDWWQGEINGVTGLFPSNYVK 87
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
Y A + ++LS S+GQLI + K WW+GE+ G FP++YVK+
Sbjct: 43 YAANNEDELSFSKGQLINVMNKDDPDWWQGEINGV-----TGLFPSNYVKM 88
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 13/14 (92%)
Query: 266 QVGWFPASYVKVMG 279
Q GWFPAS+VK++G
Sbjct: 8 QKGWFPASHVKLLG 21
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV 101
+A Y+F +R+ ELS + GDII + + + + GW GE+ G+ GWFP +YVE ++ E
Sbjct: 9 KARYDFCARDRSELSLKEGDIIKI-LNKKGQQGWWRGEIYGRIGWFPSNYVE--EDYSEY 65
Query: 102 VPE 104
+PE
Sbjct: 66 LPE 68
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 227 YTATSSEQLSLSRGQLI-MIRKKTTTGWWEGELQAKGKKRQVGWFPASYV---------K 276
+ A +LSL G +I ++ KK GWW GE+ + +GWFP++YV +
Sbjct: 14 FCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGR-----IGWFPSNYVEEDYSEYLPE 68
Query: 277 VMGGGGISIQKYLI 290
GG G S+ LI
Sbjct: 69 TGGGSGSSMTYKLI 82
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYV 154
A Y + + + +L+ + ++I + K + WW G I R G FPSNYV
Sbjct: 10 ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYV 58
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
+A Y + E GDL F + +VI + KK +NDWWTG + R G+FP+NYV
Sbjct: 7 VALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 57
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
A+Y F +L F+ GD+I + K +++ W G + G+ G FP +YVE
Sbjct: 8 ALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 58
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
+A Y + +PGDL F + +VI + KK +NDWWTG + G+FP+NYV
Sbjct: 7 VALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 57
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
A+Y F +L+F+ GD+I + K +++ W G G+ G FP +YV
Sbjct: 8 ALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYVR 58
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 52.4 bits (124), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
S RR +A+ +F + DEL F+ DII + + Q E W+ GEL G GWFP +VE
Sbjct: 5 SSGRRAKALLDFERHDDDELGFRKNDIITI-ISQKDEHCWV-GELNGLRGWFPAKFVEVL 62
Query: 96 DETGEVVPEYYIAAYP 111
DE + EY IA+ P
Sbjct: 63 DERSK---EYSIASGP 75
Score = 27.7 bits (60), Expect = 6.9, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
A L + ++L + +I I + W GEL GWFPA +V+V+
Sbjct: 10 AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNG-----LRGWFPAKFVEVL 62
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
S R +A+Y F +R DEL+ + GDI+++ K+ E GW G L G+ G FP +YVE
Sbjct: 5 SSGRLCKALYSFQARQDDELNLEKGDIVIIHEKK--EEGWWFGSLNGKKGHFPAAYVE 60
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G + L + A ++L+L +G +++I +K GWW G L GKK G FPA+Y
Sbjct: 4 GSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLN--GKK---GHFPAAY 58
Query: 275 VKVM 278
V+ +
Sbjct: 59 VEEL 62
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVT-KKENDWWTGTIGDRTGLFPSNYV 154
A Y + + + +L + +++ + KKE WW G++ + G FP+ YV
Sbjct: 12 ALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
RA + F N DELSF GD+I V + E GW G L G+TGWFP +YV
Sbjct: 12 RAKFNFQQTNEDELSFSKGDVIHVTRVE--EGGWWEGTLNGRTGWFPSNYVREV 63
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYVVPYEA 159
A + + T +L+F++ +VI+VT+ +E WW GT+ RTG FPSNYV +A
Sbjct: 13 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVREVKA 65
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
+ T+ ++LS S+G +I + + GWWEG L + GWFP++YV+
Sbjct: 17 FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGR-----TGWFPSNYVR 61
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
+ +A+Y++ ++ GDEL+F+ GD I+V K A GW GEL G+ GW P +YV+
Sbjct: 6 QVKALYDYDAQTGDELTFKEGDTIIVHQKDPA--GWWEGELNGKRGWVPANYVQ 57
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
L Y A + ++L+ G I++ +K GWWEGEL K GW PA+YV+
Sbjct: 10 LYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGK-----RGWVPANYVQ 57
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRTGLFPSNYV 154
A Y YD+ +LTF + + I V +K+ WW G + + G P+NYV
Sbjct: 9 ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 56
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
+ +A+Y++ ++ GDEL+F+ GD I+V K A GW GEL G+ GW P +YV+
Sbjct: 5 QVKALYDYDAQTGDELTFKEGDTIIVHQKDPA--GWWEGELNGKRGWVPANYVQ 56
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
L Y A + ++L+ G I++ +K GWWEGEL K GW PA+YV+
Sbjct: 9 LYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGK-----RGWVPANYVQ 56
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRTGLFPSNYV 154
A Y YD+ +LTF + + I V +K+ WW G + + G P+NYV
Sbjct: 8 ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 55
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQ 160
++ A + ++ E G+L F + +VI + K++ +WW G + +R G+FPSNYV PY +
Sbjct: 3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPYNSN 60
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
E + +A+++F + EL+F+ GD+I + K +P W G+L + G FP +YV P
Sbjct: 1 ETKFVQALFDFNPQESGELAFKRGDVITLINKD--DPNWWEGQLNNRRGIFPSNYVCP 56
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
+ L + S +L+ RG +I + K WWEG+L + G FP++YV
Sbjct: 3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRR-----GIFPSNYV 54
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQ 160
++ A + ++ E G+L F + +VI + K++ +WW G + +R G+FPSNYV PY +
Sbjct: 5 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVAPYNSN 62
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
E + +A+++F + EL+F+ GD+I + K +P W G+L + G FP +YV P
Sbjct: 3 ETKFVQALFDFNPQESGELAFKRGDVITLINKD--DPNWWEGQLNNRRGIFPSNYVAP 58
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
+ L + S +L+ RG +I + K WWEG+L + G FP++YV
Sbjct: 5 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRR-----GIFPSNYV 56
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPY 157
++ A + ++ E G+L F + +VI + K++ +WW G + +R G+FPSNYV PY
Sbjct: 3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY 57
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
E + +A+++F + EL+F+ GD+I + K +P W G+L + G FP +YV P
Sbjct: 1 ETKFVQALFDFNPQESGELAFKRGDVITLINKD--DPNWWEGQLNNRRGIFPSNYVCP 56
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
+ L + S +L+ RG +I + K WWEG+L + G FP++YV
Sbjct: 3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRR-----GIFPSNYV 54
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
A Y F +R+ ELS + GD++ + + + GW GE G+ GWFP +YVE
Sbjct: 12 ARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 227 YTATSSEQLSLSRGQLIMI--RKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG 279
+ A +LSL G ++ I R GWW+GE + +GWFP++YV+ G
Sbjct: 16 FAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGR-----IGWFPSTYVEEEG 65
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
+A Y + + + +L+ + +V+ + + + WW G R G FPS YV
Sbjct: 11 VARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 61
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
+R+ +A+Y + + ELSF G + V + EPGWL G L G+TG PE+YVE
Sbjct: 10 FRKAKALYACKAEHDSELSFTAG-TVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 64
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 108 AAYPYDSTEPGDLTFNQDEVI--YVTKKENDWWTGTIGDRTGLFPSNYV 154
A Y + +L+F V +E W GT+ +TGL P NYV
Sbjct: 15 ALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYV 63
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAG--ELRGQTGWFPESYVEPC 95
+RYRA+Y++ + + DE+SFQ GD I V V+Q + GW+ G E G TG P +YVE
Sbjct: 4 KRYRAVYDYSAADEDEVSFQDGDTI-VNVQQ-IDDGWMYGTVERTGDTGMLPANYVEAI 60
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 106 YIAAYPYDSTEPGDLTFNQ-DEVIYVTKKENDWWTGTI---GDRTGLFPSNYV 154
Y A Y Y + + +++F D ++ V + ++ W GT+ GD TG+ P+NYV
Sbjct: 6 YRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGD-TGMLPANYV 57
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
Y+A +++S G I+ ++ GW G ++ G G PA+YV+ +
Sbjct: 12 YSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGD---TGMLPANYVEAI 60
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
IA Y Y + +L+F++ ++I V K++ DWW G I TGLFPSNYV
Sbjct: 22 IAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 70
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
A+Y++ + N DELSF G +I V K + P W GE+ G TG FP +YV+
Sbjct: 23 AMYDYAANNEDELSFSKGQLINVMNKDD--PDWWQGEINGVTGLFPSNYVK 71
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
Y A + ++LS S+GQLI + K WW+GE+ G FP++YVK+
Sbjct: 27 YAANNEDELSFSKGQLINVMNKDDPDWWQGEINGV-----TGLFPSNYVKM 72
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
RA + F N DELSF GD+I V + E GW G G+TGWFP +YV
Sbjct: 10 RAKFNFQQTNEDELSFSKGDVIHVTRVE--EGGWWEGTHNGRTGWFPSNYV 58
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 154
A + + T +L+F++ +VI+VT+ +E WW GT RTG FPSNYV
Sbjct: 11 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
+ T+ ++LS S+G +I + + GWWEG + GWFP++YV+
Sbjct: 15 FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGR-----TGWFPSNYVR 59
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 34 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
G EY R ++ + N DEL+F+ G+II + K+ E GW GEL G+ G FP+++
Sbjct: 4 GAKEY--CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNF 59
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYVV 155
EY +PY T +LTF + E+I++ KE WW G + + G+FP N+ V
Sbjct: 7 EYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAV 61
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTT--TGWWEGELQAKGKKRQVGWFPASY 274
E L PYT T+ ++L+ G++I + K T GWW+GEL K G FP ++
Sbjct: 7 EYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGK-----EGVFPDNF 59
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4
And Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
Length = 59
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
RA + F N DELSF GD+I V + E GW G G+TGWFP +YV
Sbjct: 8 RAKFNFQQTNEDELSFSKGDVIHVTRVE--EGGWWEGTHNGRTGWFPSNYV 56
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 154
A + + T +L+F++ +VI+VT+ +E WW GT RTG FPSNYV
Sbjct: 9 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
+ T+ ++LS S+G +I + + GWWEG + GWFP++YV+
Sbjct: 13 FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGR-----TGWFPSNYVR 57
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
Length = 61
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
RA + F N DELSF GD+I V + E GW G G+TGWFP +YV
Sbjct: 10 RAKFNFQQTNEDELSFSKGDVIHVT--RVEEGGWWEGTHNGRTGWFPSNYV 58
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 154
A + + T +L+F++ +VI+VT+ +E WW GT RTG FPSNYV
Sbjct: 11 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
+ T+ ++LS S+G +I + + GWWEG + GWFP++YV+
Sbjct: 15 FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGR-----TGWFPSNYVR 59
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Proline- Serine-Threonine Phosphatase-Interacting
Protein 1
Length = 69
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+G S + YRA+Y++ ++N DEL GDI+ V ++ E GW E GQ G+ P SY+
Sbjct: 3 SGSSGAQEYRALYDYTAQNPDELDLSAGDILEVILE--GEDGWWTVERNGQRGFVPGSYL 60
Query: 93 E 93
E
Sbjct: 61 E 61
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG 280
L YTA + ++L LS G ++ + + GWW E + Q G+ P SY++ + G
Sbjct: 13 ALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVE-----RNGQRGFVPGSYLEKLSG 65
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 98 TGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVT-KKENDWWTGTIGDRTGLFPSNYV 154
+G + Y A Y Y + P +L + +++ V + E+ WWT + G P +Y+
Sbjct: 3 SGSSGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYL 60
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 82 GQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTG 140
G W P SY+E +A Y Y + +L+F + +IYV KK +D W+ G
Sbjct: 7 GDPPWAPRSYLEKV-----------VAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEG 55
Query: 141 TIGDRTGLFPSNYV 154
+ TGLFP NYV
Sbjct: 56 VMNGVTGLFPGNYV 69
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
S + AIY++ DELSFQ G II V +K+N + GW G + G TG FP +YVE
Sbjct: 15 SYLEKVVAIYDYTKDKEDELSFQEGAIIYV-IKKNDD-GWYEGVMNGVTGLFPGNYVE 70
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
E + YT ++LS G +I + KK GW+EG + G FP +YV+ +
Sbjct: 18 EKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNG-----VTGLFPGNYVESI 72
Query: 279 GG 280
G
Sbjct: 73 SG 74
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
P Y A + +D E G+L F + + I+V + +WW G +TG+FP NYV P
Sbjct: 158 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 212
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 98
+A+++F + EL F+ GD I V N++P W G GQTG FP +YV P +
Sbjct: 162 QALFDFDPQEDGELGFRRGDFIHV--MDNSDPNWWKGACHGQTGMFPRNYVTPVNRN 216
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
A Y+F + DELSF+ GDI+ V + + + W EL G+ G+ P++Y+E
Sbjct: 5 AKYDFKATADDELSFKRGDILKV-LNEECDQNWYKAELNGKDGFIPKNYIE 54
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 154
IA Y + +T +L+F + +++ V +E D W+ + + G P NY+
Sbjct: 4 IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYI 53
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 216 KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
++P L + +L RG I + + WW+G Q G FP +YV
Sbjct: 156 QQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHG-----QTGMFPRNYV 210
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
I Y Y + +L F++ ++I V KE+ DWW G + + GLFPSNYV
Sbjct: 6 IGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYV 54
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 44 IYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
+Y++ ++N DEL+F G II V K++ P W GE+ GQ G FP +YV+
Sbjct: 8 MYDYTAQNDDELAFSKGQIINVLNKED--PDWWKGEVSGQVGLFPSNYVK 55
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
YTA + ++L+ S+GQ+I + K WW+GE+ QVG FP++YVK+
Sbjct: 11 YTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSG-----QVGLFPSNYVKL 56
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRTGLFPSNYV 154
A Y YD+ + +L+FN +++I + K++ + WWTG + + GLFP+NYV
Sbjct: 10 ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+A+Y + +++ DELSF DII + +K++ GW G LRG+ G FP +YV
Sbjct: 9 KALYAYDAQDTDELSFNANDIIDI-IKEDPS-GWWTGRLRGKQGLFPNNYV 57
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
G+P+ K L Y A +++LS + +I I K+ +GWW G L+ K G F
Sbjct: 4 GSPQCK------ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGK-----QGLF 52
Query: 271 PASYV 275
P +YV
Sbjct: 53 PNNYV 57
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+A + F N DELS GDII V + E GW G L G+TGWFP +YV
Sbjct: 14 KARFNFKQTNEDELSVCKGDIIYVT--RVEEGGWWEGTLNGRTGWFPSNYV 62
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 154
A + + T +L+ + ++IYVT+ +E WW GT+ RTG FPSNYV
Sbjct: 15 ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
I + T+ ++LS+ +G +I + + GWWEG L + GWFP++YV+
Sbjct: 12 IVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGR-----TGWFPSNYVR 63
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYVV 155
P A Y ++ +PGDL F + I V K + DWW G + +TG+FP+NYV
Sbjct: 17 PIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVT 72
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
A+Y F + +L+FQ GD I V K ++ W G+LRGQTG FP +YV
Sbjct: 22 ALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYV 71
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With A
Herpesviral Ligand
Length = 65
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 96 DETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPSNY 153
+E G++V +A YPYD P DL+F + E + V ++ +WW + + G PSNY
Sbjct: 4 EEQGDIV----VALYPYDGIHPDDLSFKKGEKMKVLEEHGEWWKAKSLLTKKEGFIPSNY 59
Query: 154 V 154
V
Sbjct: 60 V 60
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In
Complex With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
RA+Y+F N EL F+ GDII + + W G L GQ+G+FP +YVE
Sbjct: 15 RALYDFEPENEGELGFKEGDIITL--TNQIDENWYEGMLHGQSGFFPINYVE 64
Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
A Y ++ G+L F + ++I +T + + +W+ G + ++G FP NYV
Sbjct: 16 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYV 63
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYVV 155
+ A Y ++ P +L F + ++IY+T + +WW GT RTGL PSNYV
Sbjct: 10 FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 60
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+ +RA+Y F R DEL F+ GDII + ++ W G +G+TG P +YV
Sbjct: 8 KVFRALYTFEPRTPDELYFEEGDIIY--ITDMSDTNWWKGTSKGRTGLIPSNYV 59
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G ++ L + + ++L G +I I + T WW+G K + G P++Y
Sbjct: 4 GSSGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGT-----SKGRTGLIPSNY 58
Query: 275 VKVMGG 280
V G
Sbjct: 59 VAEQSG 64
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVE 93
R RA+Y++ + DELSF+ GD + ++ E GW G L GQ G +P +YVE
Sbjct: 430 RVRALYDYEGQEHDELSFKAGDEL-TKMEDEDEQGWCKGRLDNGQVGLYPANYVE 483
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of
P67phox Complexed With The C-Terminal Tail Region Of
P47phox
Length = 62
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
+ A++ + + ++L FQ GDII+V K N E WL GE +G+ G FP+ +VE
Sbjct: 7 QVEALFSYEATQPEDLEFQEGDIILVLSKVNEE--WLEGESKGKVGIFPKVFVE 58
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
A + Y++T+P DL F + ++I V K N+ W G + G+FP +V
Sbjct: 10 ALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 29 STDPTGVSEYR----RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT 84
S P G S R R A+++F + EL+F+ GD+I + + N + WL G +RG T
Sbjct: 161 SVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKD--WLEGTVRGAT 218
Query: 85 GWFPESYVEPC-DETGEVVPEYYIAAYPYDST 115
G FP S+V+ D E P ++ Y Y+ T
Sbjct: 219 GIFPLSFVKILKDFPEEDDPTNWLRCYYYEDT 250
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
A + + +L F +VI++ + N DW GT+ TG+FP ++V
Sbjct: 179 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 226
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
+ I+ + ++N DEL+ + GDI+ + K + GW GEL G+ G FP+++V+
Sbjct: 11 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 62
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT--TGWWEGELQAKGKKRQVGWFPA 272
G + V+ PY A + ++L++ G ++ + K GWWEGEL + G FP
Sbjct: 4 GSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGR-----RGVFPD 58
Query: 273 SYVKVMGG 280
++VK++ G
Sbjct: 59 NFVKLLSG 66
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYV 154
+Y +PY++ +LT + +++ + K+ WW G + R G+FP N+V
Sbjct: 8 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 61
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
++ R A+++F + EL+F+ GD+I + + N + WL G +RG TG FP S+V+
Sbjct: 3 KHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKD--WLEGTVRGATGIFPLSFVK 57
Score = 32.3 bits (72), Expect = 0.28, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
A + + +L F +VI++ + N DW GT+ TG+FP ++V
Sbjct: 9 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 56
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
E R+ RAIY+F + +EL+F+ G+II V +++P W GE G FP ++V
Sbjct: 16 EARKVRAIYDFEAAEDNELTFKAGEIITVL--DDSDPNWWKGETHQGIGLFPSNFV 69
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
A Y +++ E +LTF E+I V + +WW G GLFPSN+V
Sbjct: 22 AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
+ A +L+ G++I + + WW+GE + +G FP+++V
Sbjct: 26 FEAAEDNELTFKAGEIITVLDDSDPNWWKGETH-----QGIGLFPSNFV 69
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 154
+ A Y ++ P +L F + ++IY+T + +WW GT RTGL PSNYV
Sbjct: 6 FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+ + +RA+Y F R DEL F+ GDII + ++ W G +G+TG P +YV
Sbjct: 2 QVKVFRALYTFEPRTPDELYFEEGDIIY--ITDMSDTNWWKGTSKGRTGLIPSNYV 55
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
++ L + + ++L G +I I + T WW+G +KG+ G P++YV
Sbjct: 4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKG--TSKGR---TGLIPSNYV 55
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3
Domain From Human Cd2ap (Cms) In Complex With A
Proline-Rich Peptide From Human Rin3
Length = 65
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
S+ R+ + ++E++ +N DEL + GDII + + E GW +G L + G FP ++V+
Sbjct: 5 SKKRQCKVLFEYIPQNEDELELKVGDII--DINEEVEEGWWSGTLNNKLGLFPSNFVKEL 62
Query: 96 DET 98
+ T
Sbjct: 63 EVT 65
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 213 PKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
P G K VL Y + ++L L G +I I ++ GWW G L K +G FP+
Sbjct: 2 PLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNK-----LGLFPS 56
Query: 273 SYVK 276
++VK
Sbjct: 57 NFVK 60
Score = 35.4 bits (80), Expect = 0.033, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 134 ENDWWTGTIGDRTGLFPSNYVVPYE 158
E WW+GT+ ++ GLFPSN+V E
Sbjct: 39 EEGWWSGTLNNKLGLFPSNFVKELE 63
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
R A+++F + EL+F+ GD+I + + N + WL G +RG TG FP S+V+
Sbjct: 20 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKD--WLEGTVRGATGIFPLSFVK 71
Score = 32.3 bits (72), Expect = 0.28, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
A + + +L F +VI++ + N DW GT+ TG+FP ++V
Sbjct: 23 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 70
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 45.1 bits (105), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
+A+++F + EL F+ GD I V N++P W G GQTG FP +YV P +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHV--MDNSDPNWWKGACHGQTGMFPRNYVTPVN 58
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
Y A + +D E G+L F + + I+V + +WW G +TG+FP NYV P
Sbjct: 4 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 56
Score = 27.7 bits (60), Expect = 6.8, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 234 QLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
+L RG I + + WW+G Q G FP +YV
Sbjct: 18 ELGFRRGDFIHVMDNSDPNWWKGACHG-----QTGMFPRNYV 54
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 45.1 bits (105), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
+A+++F + EL F+ GD I V N++P W G GQTG FP +YV P +
Sbjct: 4 QALFDFDPQEDGELGFRRGDFIHV--MDNSDPNWWKGACHGQTGMFPRNYVTPVN 56
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
A + +D E G+L F + + I+V + +WW G +TG+FP NYV P
Sbjct: 5 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 54
Score = 27.7 bits (60), Expect = 7.2, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 234 QLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
+L RG I + + WW+G Q G FP +YV
Sbjct: 16 ELGFRRGDFIHVMDNSDPNWWKGACHG-----QTGMFPRNYV 52
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
A V Y A ++LSL +G +++ +K + GWW G QVGWFP++YV
Sbjct: 20 AYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNG-----QVGWFPSNYV 69
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 45 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+ +++ DELS G ++V + GW G GQ GWFP +YV
Sbjct: 24 FNYMAEREDELSLIKGTKVIV--MEKCSDGWWRGSYNGQVGWFPSNYV 69
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 112 YDSTEPGDLTFN-----QDE--------VIYVTKKENDWWTGTIGDRTGLFPSNYV 154
YD P + FN +DE VI + K + WW G+ + G FPSNYV
Sbjct: 14 YDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 69
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 44.7 bits (104), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
+A+++F + EL F+ GD I V N++P W G GQTG FP +YV P +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHV--MDNSDPNWWKGACHGQTGMFPRNYVTPVN 58
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
Y A + +D E G+L F + + I+V + +WW G +TG+FP NYV P
Sbjct: 4 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 56
Score = 27.7 bits (60), Expect = 7.9, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 234 QLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
+L RG I + + WW+G Q G FP +YV
Sbjct: 18 ELGFRRGDFIHVMDNSDPNWWKGACHG-----QTGMFPRNYV 54
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
AIY + ++ DE+S PGDII V ++ + GW GE G G FP SY +
Sbjct: 4 EAIYAYEAQGDDEISIDPGDIITV-IRGDDGSGWTYGECDGLKGLFPTSYCK 54
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 44.7 bits (104), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
A Y +++ E +L F EV+ V N WWTG + ++ GLFP+NYV P
Sbjct: 6 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
R RA+Y+F + DEL F+ G++ V V ++ P W G L + G FP +YV P
Sbjct: 2 RWARALYDFEALEEDELGFRSGEV--VEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 44.7 bits (104), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
+ I+ + ++N DEL+ + GDI+ + K + GW GEL G+ G FP+++V+
Sbjct: 6 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 57
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKK--TTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
V+ PY A + ++L++ G ++ + K GWWEGEL + G FP ++VK++
Sbjct: 7 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRR-----GVFPDNFVKLL 59
Score = 37.0 bits (84), Expect = 0.011, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYV 154
+Y +PY++ +LT + +++ + K+ WW G + R G+FP N+V
Sbjct: 3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 56
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 44.7 bits (104), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
A Y +++ E +L F EV+ V N WWTG + ++ GLFP+NYV P
Sbjct: 8 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 57
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
R RA+Y+F + DEL F+ G++ V V ++ P W G L + G FP +YV P
Sbjct: 4 RWARALYDFEALEEDELGFRSGEV--VEVLDSSNPSWWTGRLHNKLGLFPANYVAP 57
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPC 95
+RA+Y++++ + DE+SF+ GD I+ Q + GW+ G ++ G+TG P +YVE
Sbjct: 6 FRAMYDYMAADADEVSFKDGDAIINV--QAIDEGWMYGTVQRTGRTGMLPANYVEAI 60
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 108 AAYPYDSTEPGDLTFNQ-DEVIYVTKKENDWWTGTIGD--RTGLFPSNYV 154
A Y Y + + +++F D +I V + W GT+ RTG+ P+NYV
Sbjct: 8 AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYV 57
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 44.7 bits (104), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
+ I+ + ++N DEL+ + GDI+ + K + GW GEL G+ G FP+++V+
Sbjct: 7 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 58
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 216 KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKK--TTTGWWEGELQAKGKKRQVGWFPAS 273
K + V+ PY A + ++L++ G ++ + K GWWEGEL + G FP +
Sbjct: 1 KSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRR-----GVFPDN 55
Query: 274 YVKVM 278
+VK++
Sbjct: 56 FVKLL 60
Score = 37.0 bits (84), Expect = 0.012, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYV 154
+Y +PY++ +LT + +++ + K+ WW G + R G+FP N+V
Sbjct: 4 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 57
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 94
Y+A+Y ++ +N DEL + GDI V V + + GW G R Q G FP +YV+P
Sbjct: 9 YQALYSYIPQNDDELELRDGDI--VDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRT---GLFPSNYVVP 156
Y A Y Y +L +++ V +K +D W RT G FP NYV P
Sbjct: 9 YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 94
Y+A+Y ++ +N DEL + GDI V V + + GW G R Q G FP +YV+P
Sbjct: 9 YQALYSYIPQNDDELELRDGDI--VDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRT---GLFPSNYVVP 156
Y A Y Y +L +++ V +K +D W RT G FP NYV P
Sbjct: 9 YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 44.7 bits (104), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
+ I+ + ++N DEL+ + GDI+ + K + GW GEL G+ G FP+++V+
Sbjct: 13 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 64
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 214 KGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKK--TTTGWWEGELQAKGKKRQVGWFP 271
+ K + V+ PY A + ++L++ G ++ + K GWWEGEL + G FP
Sbjct: 5 RTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRR-----GVFP 59
Query: 272 ASYVKVM 278
++VK++
Sbjct: 60 DNFVKLL 66
Score = 37.0 bits (84), Expect = 0.013, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYV 154
+Y +PY++ +LT + +++ + K+ WW G + R G+FP N+V
Sbjct: 10 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 63
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 44.7 bits (104), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
A Y +++ E +L F EV+ V N WWTG + ++ GLFP+NYV P
Sbjct: 10 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 59
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
R RA+Y+F + DEL F+ G++ V V ++ P W G L + G FP +YV P
Sbjct: 6 RWARALYDFEALEEDELGFRSGEV--VEVLDSSNPSWWTGRLHNKLGLFPANYVAP 59
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
Length = 72
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
A+Y F + +EL F+ GD I + E GWL G L+G+TG FP +V+ C
Sbjct: 18 ALYRFQALEPNELDFEVGDKIRI--LATLEDGWLEGSLKGRTGIFPYRFVKLC 68
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 105 YYIAAYPYDSTEPGDLTFNQ-DEVIYVTKKENDWWTGTIGDRTGLFPSNYV 154
Y +A Y + + EP +L F D++ + E+ W G++ RTG+FP +V
Sbjct: 15 YGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFV 65
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
A V Y A ++LSL +G +++ +K + GWW G QVGWFP++YV
Sbjct: 7 AYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNG-----QVGWFPSNYV 56
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 45 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+ +++ DELS G ++V K GW G GQ GWFP +YV
Sbjct: 11 FNYMAEREDELSLIKGTKVIVMEK--CSDGWWRGSYNGQVGWFPSNYV 56
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 126 EVIYVTKKENDWWTGTIGDRTGLFPSNYV 154
+VI + K + WW G+ + G FPSNYV
Sbjct: 28 KVIVMEKCSDGWWRGSYNGQVGWFPSNYV 56
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 44.7 bits (104), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
R+ + ++E++ +N DEL + GDII + + E GW +G L + G FP ++V+
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDII--DINEEVEEGWWSGTLNNKLGLFPSNFVK 54
Score = 37.4 bits (85), Expect = 0.009, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
VL Y + ++L L G +I I ++ GWW G L K +G FP+++VK
Sbjct: 6 VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNK-----LGLFPSNFVK 54
Score = 35.8 bits (81), Expect = 0.026, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 134 ENDWWTGTIGDRTGLFPSNYV 154
E WW+GT+ ++ GLFPSN+V
Sbjct: 33 EEGWWSGTLNNKLGLFPSNFV 53
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In
Complex With A Peptide Of Xirp2
Length = 64
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 10/64 (15%)
Query: 35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEP---GWLAGELR--GQTGWFPE 89
++ R YRA+Y++ +++ DE+SF+ GD I+ N +P GW+ G ++ G+TG P
Sbjct: 3 MANLRTYRAMYDYSAQDEDEVSFRDGDYIV-----NVQPIDDGWMYGTVQRTGRTGMLPA 57
Query: 90 SYVE 93
+Y+E
Sbjct: 58 NYIE 61
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 106 YIAAYPYDSTEPGDLTFNQ-DEVIYVTKKENDWWTGTIGD--RTGLFPSNYV 154
Y A Y Y + + +++F D ++ V ++ W GT+ RTG+ P+NY+
Sbjct: 9 YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYI 60
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
+ Y+A +++S G I+ + GW G +Q G+ G PA+Y++ +
Sbjct: 12 MYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGR---TGMLPANYIEFV 63
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1
Bound With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1
Bound With A Synthetic Peptide
Length = 70
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
+A+Y + ++ + L+F D+I V +Q+ W GE++GQ GWFP+SYV+
Sbjct: 16 QALYPWRAKKDNHLNFNKNDVITVLEQQDM---WWFGEVQGQKGWFPKSYVK 64
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 154
A YP+ + + L FN+++VI V ++++ WW G + + G FP +YV
Sbjct: 17 ALYPWRAKKDNHLNFNKNDVITVLEQQDMWWFGEVQGQKGWFPKSYV 63
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 207 AAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQ 266
AAQ +G + A L P+ A L+ ++ +I + ++ WW GE+Q Q
Sbjct: 2 AAQPAMAQGALLQ-AQALYPWRAKKDNHLNFNKNDVITVLEQQDM-WWFGEVQG-----Q 54
Query: 267 VGWFPASYVKVMGGGG 282
GWFP SYVK++
Sbjct: 55 KGWFPKSYVKLISAAA 70
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQ-DEVIYVTKKENDWWTGTIGDRTGLFPSNYVVP 156
EY A Y +D + GDL D+V + K +W+ G+ RTG+FP+NYV P
Sbjct: 3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKP 56
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
A+Y+F + +L +PGD V + + P W G G+TG FP +YV+P
Sbjct: 6 EALYQFDPQQDGDLGLKPGD--KVQLLEKLSPEWYKGSCNGRTGIFPANYVKP 56
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
A Y +++ E +L F EV+ V N WWTG + ++ GLFP+NYV P
Sbjct: 7 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 56
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
RA+Y+F + DEL F+ G++ V V ++ P W G L + G FP +YV P
Sbjct: 6 RALYDFEALEEDELGFRSGEV--VEVLDSSNPSWWTGRLHNKLGLFPANYVAP 56
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
A V Y A ++LSL +G + + +K + GWW G Q+GWFP++YV
Sbjct: 3 AFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNG-----QIGWFPSNYV 52
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 45 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+ +V+ DELS G V V + GW G GQ GWFP +YV
Sbjct: 7 FAYVAEREDELSLVKGS--RVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVV 155
+ Y + +L+ + + V +K +D WW G+ + G FPSNYV+
Sbjct: 4 FVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVL 53
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 154
+ A Y ++ P +L + ++IY+T + +WW GT RTGL PSNYV
Sbjct: 17 FRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYV 66
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+ + +RA+Y F R DEL + GDII + ++ W G +G+TG P +YV
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGDIIYIT--DXSDTNWWKGTSKGRTGLIPSNYV 66
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 233 EQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
++L + G +I I + T WW+G +KG+ G P++YV
Sbjct: 29 DELYIEEGDIIYITDXSDTNWWKG--TSKGR---TGLIPSNYV 66
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVE 93
R RA+Y++ + DELSF+ GD + + + E GW G L GQ G +P +YVE
Sbjct: 5 RVRALYDYDGQEQDELSFKAGD-ELTKLGEEDEQGWCRGRLDSGQLGLYPANYVE 58
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain
Of Cd2ap
Length = 57
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
Y Y++ + + DEL+ + G+II VK+ E GWL GEL G+ G FP+++V+
Sbjct: 3 YIVEYDYDAVHDDELTIRVGEIIR-NVKKLQEEGWLEGELNGRRGMFPDNFVK 54
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYV 154
YI Y YD+ +LT E+I KK E W G + R G+FP N+V
Sbjct: 3 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 53
Score = 31.6 bits (70), Expect = 0.50, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 227 YTATSSEQLSLSRGQLIM-IRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
Y A ++L++ G++I ++K GW EGEL + G FP ++VK
Sbjct: 9 YDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRR-----GMFPDNFVK 54
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
Y+A Y + E DL ++I + + N DWW G I DR G FP+N+V
Sbjct: 10 YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFV 59
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
Y A+Y+FV + ++L +PGDII + N + W G+++ + G+FP ++V+
Sbjct: 10 YVALYKFVPQENEDLEMRPGDIITLLEDSNED--WWKGKIQDRIGFFPANFVQ 60
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 222 TVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG 280
L + +E L + G +I + + + WW+G++Q + +G+FPA++V+ + G
Sbjct: 11 VALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDR-----IGFFPANFVQRLSG 64
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1
Length = 68
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
S RR + + ++ +N DEL + GDII V E GW G L G+TG FP ++++
Sbjct: 5 SSGRRCQVAFSYLPQNDDELELKVGDII--EVVGEVEEGWWEGVLNGKTGMFPSNFIK 60
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G++ ++A Y + ++L L G +I + + GWWEG L K G FP+++
Sbjct: 7 GRRCQVAF---SYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGK-----TGMFPSNF 58
Query: 275 VKVMGG 280
+K + G
Sbjct: 59 IKELSG 64
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
A+ Y +L ++I V + E WW G + +TG+FPSN++
Sbjct: 12 VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 59
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
Length = 62
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
Y Y++ + + DEL+ + G+II VK+ E GWL GEL G+ G FP+++V+
Sbjct: 4 YIVEYDYDAVHDDELTIRVGEIIR-NVKKLQEEGWLEGELNGRRGMFPDNFVK 55
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYV 154
YI Y YD+ +LT E+I KK E W G + R G+FP N+V
Sbjct: 4 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 54
Score = 31.6 bits (70), Expect = 0.53, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 227 YTATSSEQLSLSRGQLIM-IRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
Y A ++L++ G++I ++K GW EGEL + G FP ++VK
Sbjct: 10 YDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRR-----GMFPDNFVK 55
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
+A+Y+F N EL F+ GD+I + + W G L GQ+G+FP SYV+
Sbjct: 17 KALYDFEPENDGELGFREGDLITL--TNQIDENWYEGXLHGQSGFFPLSYVQ 66
Score = 32.3 bits (72), Expect = 0.36, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
A Y ++ G+L F + ++I +T + + +W+ G + ++G FP +YV
Sbjct: 18 ALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYV 65
Score = 32.0 bits (71), Expect = 0.42, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 234 QLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
+L G LI + + W+EG L Q G+FP SYV+V+
Sbjct: 29 ELGFREGDLITLTNQIDENWYEGXLHG-----QSGFFPLSYVQVL 68
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
RA+Y+F N EL F+ GDII + + W G L G +G+FP +YVE
Sbjct: 11 RALYDFEPENEGELGFKEGDIIT--LTNQIDENWYEGMLHGHSGFFPINYVE 60
Score = 35.0 bits (79), Expect = 0.048, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
A Y ++ G+L F + ++I +T + + +W+ G + +G FP NYV
Sbjct: 12 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYV 59
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
P Y A + +D E G+L F + + I+V + +WW G +TG+FP NYV
Sbjct: 2 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+A+++F + EL F+ GD I V N++P W G GQTG FP +YV
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHV--MDNSDPNWWKGACHGQTGMFPRNYV 54
Score = 28.5 bits (62), Expect = 4.6, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
P L + +L RG I + + WW+G Q G FP +YV
Sbjct: 2 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHG-----QTGMFPRNYV 54
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 95 CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNY 153
DETG+ E +A Y Y PG++T + +++ + N DWW + DR G P+ Y
Sbjct: 1 MDETGK---ELVLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAY 57
Query: 154 V 154
V
Sbjct: 58 V 58
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
A Y+F + DELSF+ GDI+ V + + + W EL G+ G+ P++Y+E
Sbjct: 14 AKYDFKATADDELSFKRGDILKV-LNEECDQNWYKAELNGKDGFIPKNYIE 63
Score = 33.1 bits (74), Expect = 0.19, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 154
IA Y + +T +L+F + +++ V +E D W+ + + G P NY+
Sbjct: 13 IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYI 62
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
R +Y+F N EL F+ GDII + + W G + G++G+FP +YVE
Sbjct: 7 RGLYDFEPENQGELGFKEGDIITL--TNQIDENWYEGMIHGESGFFPINYVE 56
Score = 36.2 bits (82), Expect = 0.020, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 110 YPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV---VPYE 158
Y ++ G+L F + ++I +T + + +W+ G I +G FP NYV VP E
Sbjct: 10 YDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPLE 62
>pdb|1WXU|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse
Peroxisomal Biogenesis Factor 13
Length = 93
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEP---GWLAGELRGQ-TGWFP 88
+G ++ RA Y+FV+ + +E+SF+ GD++ + +K+ +P GWL L GQ TG P
Sbjct: 12 SGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQ-QPKVRGWLLASLDGQTTGLIP 70
Query: 89 ESYVE 93
+YV+
Sbjct: 71 ANYVK 75
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG 279
+ A S E++S G ++ + K G L A + G PA+YVK++G
Sbjct: 26 FVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILG 78
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States
By Relaxation Dispersion Nmr
Length = 62
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 108 AAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYV 154
A Y YD+ E +LTF D++I + ++DWW G + GLFPSNYV
Sbjct: 9 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 58
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
AT Y A +L+ I+ + WW GEL+ G K G FP++YV +
Sbjct: 7 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSK---GLFPSNYVSL 60
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQ---TGWFPESYV 92
++ RR + IY+ + N DEL+F G++I+V +++ E W G + GQ G FP S+V
Sbjct: 8 NKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQE--WWIGHIEGQPERKGVFPVSFV 65
Query: 93 EPCDETG 99
++G
Sbjct: 66 HILSDSG 72
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G K + A + ++L+ G++I++ + WW G ++ + +++ G FP S+
Sbjct: 7 GNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERK--GVFPVSF 64
Query: 275 VKVMGGGG 282
V ++ G
Sbjct: 65 VHILSDSG 72
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 110 YPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIG---DRTGLFPSNYV 154
Y + +LTF + EVI VT +E+ +WW G I +R G+FP ++V
Sbjct: 17 YDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 65
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G E +A Y AT QLS RG+ I+I ++TT WW GE + G+ PA++
Sbjct: 4 GSSGEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGE-----RAGCCGYIPANH 58
Query: 275 VKVMGG 280
V G
Sbjct: 59 VGKHSG 64
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
E ++A Y +T+ L+F + E I + ++ DWW G G P+N+V
Sbjct: 8 EEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHV 59
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 108 AAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYV 154
A Y YD+ E +LTF D++I + ++DWW G + GLFPSNYV
Sbjct: 6 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 55
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
AT Y A +L+ I+ + WW GEL+ G K G FP++YV +
Sbjct: 4 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSK---GLFPSNYVSL 57
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 108 AAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYV 154
A Y YD+ E +LTF D++I + ++DWW G + GLFPSNYV
Sbjct: 5 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
AT Y A +L+ I+ + WW GEL+ G K G FP++YV +
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSK---GLFPSNYVSL 56
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 96 DETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
DETG+ E +A Y Y P ++T + +++ + N DWW +GDR G P+ YV
Sbjct: 2 DETGK---ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYV 58
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
R ++F +++ EL+ Q GDI+ + + + WL GE G+ G FP +YVE
Sbjct: 5 RLKFDFQAQSPKELTLQKGDIVYI--HKEVDKNWLEGEHHGRLGIFPANYVE 54
Score = 37.4 bits (85), Expect = 0.010, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 110 YPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
+ + + P +LT + +++Y+ K+ + +W G R G+FP+NYV
Sbjct: 8 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 53
>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell
Receptor Signaling 1
Length = 94
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGD-IIMVPVKQNA-EPGWLAGE--LRGQTGWFPESY 91
+ + + IY + +N DEL PGD I M P++Q + GW+ G G +G PE+Y
Sbjct: 14 ANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENY 73
Query: 92 VEPCDET 98
+ DE
Sbjct: 74 ITKADEC 80
>pdb|1X6B|A Chain A, Solution Structures Of The Sh3 Domain Of Human Rho
Guanine Exchange Factor (Gef) 16
Length = 79
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 47 FVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LR-GQTGWFPESY 91
F ++ DE++ Q D+++V E GWL GE LR G+TGWFPE +
Sbjct: 26 FFAKQADEVTLQQADVVLVL---QQEDGWLYGERLRDGETGWFPEDF 69
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 214 KGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPAS 273
KG P++ A + A +++++L + ++++ ++ GW GE G + GWFP
Sbjct: 14 KGDLPQVEITKA-FFAKQADEVTLQQADVVLVLQQED-GWLYGERLRDG---ETGWFPED 68
Query: 274 YVKVMGG 280
+ + + G
Sbjct: 69 FARFISG 75
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 95 CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNY 153
DETG+ E +A Y Y P ++T + +++ + N DWW + DR G P+ Y
Sbjct: 12 SDETGK---ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAY 68
Query: 154 V 154
V
Sbjct: 69 V 69
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 95 CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNY 153
DETG+ E +A Y Y P ++T + +++ + N DWW + DR G P+ Y
Sbjct: 1 MDETGK---ELVLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAY 57
Query: 154 V 154
V
Sbjct: 58 V 58
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P D
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG--TIGDRTGLFPSNYVVP 156
++A Y Y+S DL+F + E + V E DWW +TG PSNYV P
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAP 58
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 95 CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNY 153
DETG+ E +A Y Y P ++T + +++ + N DWW + DR G P++Y
Sbjct: 1 MDETGK---ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASY 57
Query: 154 V 154
V
Sbjct: 58 V 58
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 40.8 bits (94), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
A Y +++ E +LTF E+I V + +WW G TGLFPSN+V
Sbjct: 10 ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
RR RA+Y+F + +EL+F+ G++I V +++ W GE TG FP ++V
Sbjct: 6 RRVRALYDFEAVEDNELTFKHGELIT--VLDDSDANWWQGENHRGTGLFPSNFV 57
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
L + A +L+ G+LI + + WW+GE R G FP+++V
Sbjct: 11 LYDFEAVEDNELTFKHGELITVLDDSDANWWQGE-----NHRGTGLFPSNFV 57
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
A V Y A ++LSL G + + + + GWW G Q+GWFP++YV
Sbjct: 4 AFVXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNG-----QIGWFPSNYV 53
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 45 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+ +V+ DELS G V V + GW G GQ GWFP +YV
Sbjct: 8 FAYVAEREDELSLVXGS--RVTVXEXCSDGWWRGSYNGQIGWFPSNYV 53
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVV 155
+ Y + +L+ + V + +D WW G+ + G FPSNYV+
Sbjct: 5 FVXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYVL 54
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
L YTA S++L++ RG +I + K WW G + K Q G+FPA++V
Sbjct: 9 VVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSI----GKGQEGYFPANHV 59
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
A+Y++ + DEL+ GDII V K N E W +GQ G+FP ++V
Sbjct: 11 ALYDYTANRSDELTIHRGDIIRVFFKDN-EDWWYGSIGKGQEGYFPANHV 59
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYV 154
+A Y Y + +LT ++ ++I V K+N DWW G+IG + G FP+N+V
Sbjct: 10 VALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHV 59
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG---TIGDRTGLFPSNYVVP 156
++A Y Y+S DL+F + E + V E DWW T G RTG PSNYV P
Sbjct: 3 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTG-RTGYIPSNYVAP 56
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEP 94
+ A+Y++ SR +LSF+ G+ + + V WLA L G+TG+ P +YV P
Sbjct: 3 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLTTGRTGYIPSNYVAP 56
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
A +F + DELSF+ GDI+ V + + ++ W EL G+ G+ P++Y+E
Sbjct: 5 AKVDFKATADDELSFKRGDILKV-LNEESDQNWYKAELNGKDGFIPKNYIE 54
Score = 31.6 bits (70), Expect = 0.60, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 154
IA + +T +L+F + +++ V +E+D W+ + + G P NY+
Sbjct: 4 IAKVDFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYI 53
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 30 TDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPE 89
T+ G RR + + ++ +N DEL + GDII V E GW G L G+TG FP
Sbjct: 10 TNKRGERRRRRCQVAFSYLPQNDDELELKVGDII--EVVGEVEEGWWEGVLNGKTGMFPS 67
Query: 90 SYV 92
+++
Sbjct: 68 NFI 70
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG 280
V Y + ++L L G +I + + GWWEG L K G FP++++K + G
Sbjct: 21 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGK-----TGMFPSNFIKELSG 75
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 96 DETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
++ GE A+ Y +L ++I V + E WW G + +TG+FPSN++
Sbjct: 11 NKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 70
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 95 CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNY 153
DETG+ E +A Y Y P ++T + +++ + N DWW + DR G P+ Y
Sbjct: 1 MDETGK---ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGY 57
Query: 154 V 154
V
Sbjct: 58 V 58
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 95 CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNY 153
DETG+ E +A Y Y P ++T + +++ + N DWW + DR G P+ Y
Sbjct: 1 MDETGK---ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAY 57
Query: 154 V 154
V
Sbjct: 58 V 58
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 95 CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNY 153
DETG+ E +A Y Y P ++T + +++ + N DWW + DR G P+ Y
Sbjct: 1 MDETGK---ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAY 57
Query: 154 V 154
V
Sbjct: 58 V 58
>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
Hypothetical Protein Sh3rf2
Length = 70
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWT---GTIGDRTGLFPSNYVVP 156
++A + Y + P +L + E I V K D W + RTG+FPS+YV+P
Sbjct: 10 FVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIP 63
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPC 95
+ A++ + + +EL Q G+ I V K + GWL G L G+TG FP YV P
Sbjct: 10 FVALHTYSAHRPEELDLQKGEGIRVLGKY--QDGWLKGLSLLTGRTGIFPSDYVIPV 64
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G + L Y+A E+L L +G+ I + K GW +G G+ G FP+ Y
Sbjct: 4 GSSGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGR---TGIFPSDY 60
Query: 275 V 275
V
Sbjct: 61 V 61
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 95 CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNY 153
DETG+ E +A Y Y P ++T + +++ + N DWW + DR G P+ Y
Sbjct: 1 MDETGK---ELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAY 57
Query: 154 V 154
V
Sbjct: 58 V 58
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
A+Y++ ++ DE++ + GDI+ + N + W E+ + G+ P +YV+ D
Sbjct: 11 ALYDYQEKSPDEVTMKKGDILTLLNSTNKD--WWKVEVNDRQGFVPAAYVKKLD 62
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 96 DETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
DETG+ E +A Y Y P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 2 DETGK---ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYV 58
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
IA Y Y + +++F+ D++I + +D WW G R GLFP+NYV
Sbjct: 13 IALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
A+Y++ + DE+SF P DII + + GW G +G+ G FP +YVE
Sbjct: 14 ALYDYQAAGDDEISFDPDDIIT--NIEMIDDGWWRGVCKGRYGLFPANYVE 62
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
A L Y A +++S +I + GWW G + + G FPA+YV++
Sbjct: 12 AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGR-----YGLFPANYVEL 63
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 94
YRA+Y++ +N DEL + GD V V Q + GW G R + G FP +YV P
Sbjct: 10 YRAMYQYRPQNEDELELREGD--RVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRT---GLFPSNYVVP 156
Y A Y Y +L + + + V ++ +D W + RT G FP NYV P
Sbjct: 10 YRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
R +A+ + +N +L F GD+I++ ++ + W GE+ G +G FP S VE
Sbjct: 9 RAKALCNYRGKNPGDLKFNKGDVILL--RRQLDENWYQGEINGVSGIFPASSVE 60
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
A Y PGDL FN+ +VI + ++ + +W+ G I +G+FP++ V
Sbjct: 12 ALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSV 59
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG 280
A L Y + L ++G +I++R++ W++GE+ G FPAS V+V+ G
Sbjct: 10 AKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEING-----VSGIFPASSVEVISG 64
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
A+Y++ + DE+SF P DII + + GW G +G+ G FP +YVE
Sbjct: 22 ALYDYQAAGDDEISFDPDDIIT--NIEMIDDGWWRGVCKGRYGLFPANYVE 70
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
+A Y Y + +++F+ D++I + +D WW G R GLFP+NYV
Sbjct: 21 VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 69
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
A L Y A +++S +I + GWW G K + G FPA+YV++
Sbjct: 20 AVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVC-----KGRYGLFPANYVEL 71
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG 280
+ A S ++L+L +G ++ I K+ W EGE + +G FPA+YV+V+ G
Sbjct: 16 FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGR-----LGIFPANYVEVLSG 64
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
R ++F +++ EL+ Q GDI+ + + + WL GE G+ G FP +YVE
Sbjct: 11 RLKFDFQAQSPKELTLQKGDIVYI--HKEVDKNWLEGEHHGRLGIFPANYVE 60
Score = 35.4 bits (80), Expect = 0.042, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 110 YPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
+ + + P +LT + +++Y+ K+ + +W G R G+FP+NYV
Sbjct: 14 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 59
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
A Y +++ E +LTF E+I V + +WW G GLFPSN+V
Sbjct: 22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFV 69
Score = 38.5 bits (88), Expect = 0.004, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
R+ RA+Y+F + +EL+F+ G+II+ V +++ W GE G FP ++V
Sbjct: 18 RKVRALYDFEAVEDNELTFKHGEIII--VLDDSDANWWKGENHRGIGLFPSNFV 69
Score = 34.3 bits (77), Expect = 0.088, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
L + A +L+ G++I++ + WW+GE R +G FP+++V
Sbjct: 23 LYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGE-----NHRGIGLFPSNFV 69
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG---TIGDRTGLFPSNYVVP 156
++A Y Y+S DL+F + E + V E DWW T G +TG PSNYV P
Sbjct: 6 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTG-QTGYIPSNYVAP 59
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P D
Sbjct: 6 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLTTGQTGYIPSNYVAPSD 61
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P D
Sbjct: 88 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 143
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG--TIGDRTGLFPSNYVVPYEA 159
++A Y Y+S DL+F + E + V E DWW +TG PSNYV P ++
Sbjct: 88 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS 144
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
A+Y++ + DE+SF P DII + + GW G +G+ G FP +YVE
Sbjct: 15 ALYDYQAAGDDEISFDPDDIIT--NIEMIDDGWWRGVCKGRYGLFPANYVE 63
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
+A Y Y + +++F+ D++I + +D WW G R GLFP+NYV
Sbjct: 14 VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 62
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 213 PKGKKPEI---ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGW 269
P G + ++ A L Y A +++S +I + GWW G + + G
Sbjct: 2 PLGSENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGR-----YGL 56
Query: 270 FPASYVKV 277
FPA+YV++
Sbjct: 57 FPANYVEL 64
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase
C-src, In Complex With Amp-pnp
Length = 452
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P D
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGTIGD--RTGLFPSNYVVP 156
++A Y Y+S DL+F + E + V E DWW +TG PSNYV P
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAP 58
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P D
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGTIGD--RTGLFPSNYVVP 156
++A Y Y+S DL+F + E + V E DWW +TG PSNYV P
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAP 58
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P D
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGTIGD--RTGLFPSNYVVP 156
++A Y Y+S DL+F + E + V E DWW +TG PSNYV P
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAP 58
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 95 CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNY 153
DETG+ E + Y Y P +LT + +++ + N DWW + DR G P+ Y
Sbjct: 1 MDETGK---ELVLVLYDYQEKSPRELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAY 57
Query: 154 V 154
+
Sbjct: 58 L 58
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
I + Y + +LT + E+I +KE+ WW G I R GLFP N+V
Sbjct: 5 IVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53
Score = 35.8 bits (81), Expect = 0.030, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
A V Y A ++L++S G++I +K GWWEG++ + G FP ++V+
Sbjct: 4 AIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRR-----GLFPDNFVR 54
Score = 34.3 bits (77), Expect = 0.092, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 45 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+++ +++ DEL+ G+II K++ GW G++ G+ G FP+++V
Sbjct: 8 FDYQAQHDDELTISVGEIITNIRKEDG--GWWEGQINGRRGLFPDNFV 53
>pdb|2DLP|A Chain A, Solution Structure Of The Sh3 Domain Of Human Kiaa1783
Protein
Length = 85
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
A+ +++ N LSF GD+I + EPGW G G++G FP V+P
Sbjct: 13 ALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQP 64
Score = 30.8 bits (68), Expect = 0.89, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIY---VTKKENDWWTGTIGDRTGLFPSNYVVPYEA 159
Y IA Y + L+F++ ++I V E W G+ G R+GLFP++ V P A
Sbjct: 10 YVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAA 67
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNA-EPGWLAGELRGQTGWFPESY 91
+G S +A+Y++ + DELSF G II + K+N + G+ GE G+ G FP
Sbjct: 3 SGSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVL 62
Query: 92 VE 93
VE
Sbjct: 63 VE 64
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----WWTGTIGDRTGLFPSNYV 154
+ A Y Y+ +L+F + +I + KEN +W G R G+FPS V
Sbjct: 10 FVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 63
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 95 CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNY 153
DETG+ E +A Y Y P ++T + +++ + N DWW + DR G P+ Y
Sbjct: 1 MDETGK---ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAY 57
Query: 154 V 154
V
Sbjct: 58 V 58
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQ---TGWFPESYV 92
RR + IY+ + N DEL+F G++I+V +++ E W G + GQ G FP S+V
Sbjct: 2 RRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQE--WWIGHIEGQPERKGVFPVSFV 56
Score = 33.5 bits (75), Expect = 0.14, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Query: 119 DLTFNQDEVIYVTKKEN-DWWTGTIG---DRTGLFPSNYV 154
+LTF + EVI VT +E+ +WW G I +R G+FP ++V
Sbjct: 17 ELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 56
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
Y A+ +F ++ +L+F+ G+I++V +++ + W+A + +G G P +Y+EP E
Sbjct: 11 EEYIAVGDFTAQQVGDLTFKKGEILLV-IEKKPDGWWIAKDAKGNEGLVPRTYLEPYSE 68
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD-RTGLFPSNYVVPY 157
E YIA + + + GDLTF + E++ V +K+ D WW GL P Y+ PY
Sbjct: 11 EEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPY 66
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
+ +TA L+ +G+++++ +K GWW AK K G P +Y++
Sbjct: 16 VGDFTAQQVGDLTFKKGEILLVIEKKPDGWW----IAKDAKGNEGLVPRTYLE 64
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Sorbin And Sh3 Domain-Containing Protein 1
Length = 68
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMV--PVKQNAEPGWLAGELRGQTGWFPESYVE 93
R RA ++F ++ EL Q GDI+ + + QN W GE G+ G FP +Y+E
Sbjct: 8 RPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQN----WYEGEHHGRVGIFPRTYIE 60
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG 280
+ A + ++L L +G ++ I K+ W+EGE + VG FP +Y++++ G
Sbjct: 16 FKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGR-----VGIFPRTYIELLSG 64
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
A + + + +L + +++Y+ K+ + +W+ G R G+FP Y+
Sbjct: 12 AKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYI 59
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
A+++ V+ EL+F+ GD+I V N + W G++ + GWFP S+V
Sbjct: 14 EAVWDHVTMANRELAFKAGDVIKVLDASNKD--WWWGQIDDEEGWFPASFV 62
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
A + + + +L F +VI V N DWW G I D G FP+++V
Sbjct: 15 AVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFV 62
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
A + + ++ +L+ G +I + + WW G++ + GWFPAS+V++
Sbjct: 13 AEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQID-----DEEGWFPASFVRL 64
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG---TIGDRTGLFPSNYVVP 156
++A Y Y+S DL+F + E + V E DWW T G +TG PSNYV P
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTG-QTGYIPSNYVAP 63
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEP 94
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLTTGQTGYIPSNYVAP 63
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG---TIGDRTGLFPSNYVVP 156
++A Y Y+S DL+F + E + V E DWW T G +TG PSNYV P
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTG-QTGYIPSNYVAP 63
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEP 94
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLTTGQTGYIPSNYVAP 63
>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3
Domain With Adjacent Proline Rich Region
Length = 80
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 32 PTGVSEYRRY-RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPES 90
P G E+ +Y RA+ ++ + L F+ DII + K + E W G+L G+ G FP
Sbjct: 3 PLGSPEFAKYARALKDYNVSDTSLLPFKRNDIITITFK-DQENKWFMGQLNGKEGSFPVD 61
Query: 91 YVE 93
+VE
Sbjct: 62 HVE 64
Score = 31.6 bits (70), Expect = 0.48, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYV 154
+Y A Y+ ++ L F ++++I +T K EN W+ G + + G FP ++V
Sbjct: 11 KYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHV 63
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
R+ + ++++ +N DEL GD+I V + E GW +G L + G FP ++V+
Sbjct: 5 RQCKVLFDYSPQNEDELELIVGDVI--DVIEEVEEGWWSGTLNNKLGLFPSNFVK 57
Score = 36.6 bits (83), Expect = 0.018, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 125 DEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYE 158
D + + + E WW+GT+ ++ GLFPSN+V E
Sbjct: 27 DVIDVIEEVEEGWWSGTLNNKLGLFPSNFVKELE 60
Score = 35.0 bits (79), Expect = 0.048, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
VL Y+ + ++L L G +I + ++ GWW G L K +G FP+++VK
Sbjct: 9 VLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNK-----LGLFPSNFVK 57
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 95 CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNY 153
DETG+ E + Y Y P +LT + +++ + N DWW + DR G P+ Y
Sbjct: 1 MDETGK---ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAY 57
Query: 154 V 154
+
Sbjct: 58 L 58
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
SE ++ A+Y+++ N ++L + GD + + N P W A + GQ G+ P +YV
Sbjct: 6 SELKKVVALYDYMPMNANDLQLRKGDEYFILEESNL-PWWRARDKNGQEGYIPSNYVTEA 64
Query: 96 DET 98
+++
Sbjct: 65 EDS 67
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 234 QLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
+LS +G+ I + +K W+EG + G++ G FPASYV+V
Sbjct: 33 ELSFRKGEHICLIRKVNENWYEGRITGTGRQ---GIFPASYVQV 73
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYEA 159
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P ++
Sbjct: 6 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVDS 62
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ +R D+LSF G+ + N+ G W A L G+TG+ P +YV P D
Sbjct: 6 FVALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVD 61
>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein
Tyrosine Kinase
Length = 67
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
EI + + AT + L L RGQ +I +K WW +A+ K G+ P++YV
Sbjct: 2 SEIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWW----RARDKYGSEGYIPSNYV 55
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
E +A Y Y P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 6 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 57
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYEA 159
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P ++
Sbjct: 7 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVDS 63
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ +R D+LSF G+ + N+ G W A L G+TG+ P +YV P D
Sbjct: 7 FVALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVD 62
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
S R+ R +Y++ + N ELS ++I V + WL GE Q G P +Y+E
Sbjct: 15 SNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELL 74
Query: 96 D 96
+
Sbjct: 75 N 75
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 110 YPYDSTEPGDLTFNQDEVI---YVTKKENDWWTGTIGDRTGLFPSNYV 154
Y YD+ +L+ DEVI V ++DW G G++ G P Y+
Sbjct: 24 YDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYL 71
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 37.4 bits (85), Expect = 0.009, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 224 LAPYTATSSEQ-LSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
L P++ Q L + G+LI + + GWWEGE + + GWFPASYV+++
Sbjct: 9 LYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLR----GWFPASYVQLL 60
Score = 33.9 bits (76), Expect = 0.10, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 40 RYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVE 93
R R +Y F R+G L F G++I + Q + GW GE G GWFP SYV+
Sbjct: 5 RCRTLYPFSGERHGQGLRFAAGELITL--LQVPDGGWWEGEKEDGLRGWFPASYVQ 58
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
E +A Y Y P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 6 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 57
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase C,
Gamma 2
Length = 69
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G L Y A S++L+ RG LI K GWW+G+ + ++ +FP++Y
Sbjct: 4 GSSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQ----YFPSNY 59
Query: 275 VKVMGG 280
V+ + G
Sbjct: 60 VEDISG 65
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGDRT-GLFPSNYV 154
A Y Y + +LTF + +I+ V+K+ WW G G R FPSNYV
Sbjct: 12 ALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYV 60
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEP-GWLAGEL--RGQTGWFPESYVE 93
R +A+Y++ ++ DEL+F G +I K EP GW G+ R Q +FP +YVE
Sbjct: 8 RTVKALYDYKAKRSDELTFCRGALIHNVSK---EPGGWWKGDYGTRIQQ-YFPSNYVE 61
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYEA 159
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P ++
Sbjct: 8 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVDS 64
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ +R D+LSF G+ + N+ G W A L G+TG+ P +YV P D
Sbjct: 8 FVALYDYEARTEDDLSFHKGEKFQI---LNSSEGDWWEARSLTTGETGYIPSNYVAPVD 63
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
RA+++F + ++L F+ GDI+ + K E W A ++ G+ G P YVE C
Sbjct: 5 RALFDFNGNDDEDLPFKKGDILKIRDKP-EEQWWNAEDMDGKRGMIPVPYVEKC 57
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 64/182 (35%), Gaps = 29/182 (15%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPYEAQX 161
EY A + ++ + DL F + +++ + K E WW D + G+ P YV
Sbjct: 2 EYVRALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYV------- 54
Query: 162 XXXXXXXXXXXXXXXXXXXXSEXXXXXXXXXXXXXXXXPDFSSFTAAQAGTPK---GKKP 218
S P+ + TP P
Sbjct: 55 ----------EKCRPSSASVSTLTGGNQDSSHPQPLGGPEPGPYAQPSINTPLPNLQNGP 104
Query: 219 EIATVLAPYTATSSEQ--LSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
A V+ + ++ L+L G+L+ + K +G WEGE K G FP ++V+
Sbjct: 105 FYARVIQKRVPNAYDKTALALEVGELVKVTKINMSGQWEGECNGK-----RGHFPFTHVR 159
Query: 277 VM 278
++
Sbjct: 160 LL 161
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
L Y A ++L+ ++ +I +K GWW G+ G K+Q+ WFP++YV+ M
Sbjct: 12 LFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDY---GGKKQL-WFPSNYVEEM 62
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG-WFPESYVE 93
+A++++ ++ DEL+F II KQ+ GW G+ G+ WFP +YVE
Sbjct: 10 KALFDYKAQREDELTFTKSAIIQNVEKQDG--GWWRGDYGGKKQLWFPSNYVE 60
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
E +A Y Y P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 2 ELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 53
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
A+Y++ ++ DE++ + GDI+ + N + W E+ + G+ P +YV+ D
Sbjct: 6 ALYDYQEKSPDEVTMKKGDILTLLNSTNKD--WWKVEVNDRQGFVPAAYVKKLD 57
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 95 CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNY 153
DETG+ E + Y Y P ++T + +++ + N DWW + DR G P+ Y
Sbjct: 1 MDETGK---ELVLVLYDYQEKSPREVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAY 57
Query: 154 V 154
+
Sbjct: 58 L 58
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWF 87
S+ +GV E + +A+ + ++ + L+F DII V +Q W GE+ G GWF
Sbjct: 1 GSSGSSGV-ENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQE---NWWFGEVHGGRGWF 56
Query: 88 PESYVE--PCDETG 99
P+SYV+ P E+G
Sbjct: 57 PKSYVKIIPGSESG 70
Score = 34.3 bits (77), Expect = 0.080, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG 280
A L +TA L+ S+ +I + ++ WW GE+ GWFP SYVK++ G
Sbjct: 13 AQALCSWTAKKDNHLNFSKHDIITVLEQQEN-WWFGEVHGGR-----GWFPKSYVKIIPG 66
Score = 31.2 bits (69), Expect = 0.73, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 120 LTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 154
L F++ ++I V +++ +WW G + G FP +YV
Sbjct: 27 LNFSKHDIITVLEQQENWWFGEVHGGRGWFPKSYV 61
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C
Gamma-1
Length = 61
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
L Y A ++L+ ++ +I +K GWW G+ G K+Q+ WFP++YV+ M
Sbjct: 9 LFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDY---GGKKQL-WFPSNYVEEM 59
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG-WFPESYVEPC 95
+A++++ ++ DEL+F II KQ+ GW G+ G+ WFP +YVE
Sbjct: 7 KALFDYKAQREDELTFTKSAIIQNVEKQDG--GWWRGDYGGKKQLWFPSNYVEEM 59
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYEA 159
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P ++
Sbjct: 6 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVDS 62
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPE 89
TGV+ + A+Y++ +R D+LSF G+ + N+ G W A L G+TG+ P
Sbjct: 1 TGVT---LFVALYDYEARTEDDLSFHKGEKFQI---LNSSEGDWWEARSLTTGETGYIPS 54
Query: 90 SYVEPCD 96
+YV P D
Sbjct: 55 NYVAPVD 61
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYE 158
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P +
Sbjct: 18 FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVD 73
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ + D+LSF G+ + N+ G W A L G+TG+ P +YV P D
Sbjct: 18 FVALYDYEAITEDDLSFHKGEKFQI---LNSSEGDWWEARSLTTGETGYIPSNYVAPVD 73
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYEA 159
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P ++
Sbjct: 8 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVDS 64
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ +R D+LSF G+ + N+ G W A L G+TG+ P +YV P D
Sbjct: 8 FVALYDYEARTEDDLSFHKGEKFQI---LNSSEGDWWEARSLTTGETGYIPSNYVAPVD 63
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYEA 159
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P ++
Sbjct: 3 FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVDS 59
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ + D+LSF G+ + N+ G W A L G+TG+ P +YV P D
Sbjct: 3 FVALYDYEAITEDDLSFHKGEKFQI---LNSSEGDWWEARSLTTGETGYIPSNYVAPVD 58
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
I L Y A ++E LS +G+ I T WWE A GK G+ P++YV
Sbjct: 7 IFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKN---GYIPSNYV 59
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG--TIGDRTGLFPSNYVVPYEA 159
++A Y Y++ DL+F + E + E DWW + G PSNYV P ++
Sbjct: 8 FVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYVAPADS 64
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCD 96
+ A+Y++ +R ++LSF+ G+ + N E W G+ G+ P +YV P D
Sbjct: 8 FVALYDYEARTTEDLSFKKGE--RFQIINNTEGDWWEARSIATGKNGYIPSNYVAPAD 63
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTG---TIGDRTGLFPSNYVVPYEA 159
++A Y Y++T DL+F++ E + ++ DWW T G+ TG PSNYV P ++
Sbjct: 9 FVALYDYNATRWTDLSFHKGEKFQILDGDSGDWWEARSLTTGE-TGYIPSNYVAPVDS 65
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 214 KGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPAS 273
+G + L Y AT LS +G+ I + WWE G + G+ P++
Sbjct: 2 RGSGVTLFVALYDYNATRWTDLSFHKGEKFQILDGDSGDWWEARSLTTG---ETGYIPSN 58
Query: 274 YV 275
YV
Sbjct: 59 YV 60
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ + +LSF G+ + + ++ W A L G+TG+ P +YV P D
Sbjct: 9 FVALYDYNATRWTDLSFHKGEKFQI-LDGDSGDWWEARSLTTGETGYIPSNYVAPVD 64
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 20 APAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE 79
+P + +A PT R +Y+F + ++L F+ G+I+++ +++ E W A
Sbjct: 107 SPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVI-IEKPEEQWWSARN 165
Query: 80 LRGQTGWFPESYVE 93
G+ G P YVE
Sbjct: 166 KDGRVGMIPVPYVE 179
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 71/198 (35%), Gaps = 32/198 (16%)
Query: 94 PCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPS 151
P T E EY Y + + DL F + E++ + +K E WW+ D R G+ P
Sbjct: 116 PNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPV 175
Query: 152 NYVVPYEAQXXXXXXXXXXXXXXXXXXXXXSEXXXXXXXXXXXXXXXXPDFSSFTAAQAG 211
YV + P ++ A +G
Sbjct: 176 PYV--------------EKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSG 221
Query: 212 TPKGK-KPEIATVLAPYTATSSEQ----------LSLSRGQLIMIRKKTTTGWWEGELQA 260
+P P +T P A + ++ L+L G ++ + + G WEGE+
Sbjct: 222 SPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN- 280
Query: 261 KGKKRQVGWFPASYVKVM 278
G+K G FP ++VK+
Sbjct: 281 -GRK---GLFPFTHVKIF 294
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 20 APAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE 79
+P + +A PT R +Y+F + ++L F+ G+I+++ +++ E W A
Sbjct: 107 SPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVI-IEKPEEQWWSARN 165
Query: 80 LRGQTGWFPESYVE 93
G+ G P YVE
Sbjct: 166 KDGRVGMIPVPYVE 179
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 72/198 (36%), Gaps = 32/198 (16%)
Query: 94 PCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPS 151
P T E EY Y + + DL F + E++ + +K E WW+ D R G+ P
Sbjct: 116 PNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPV 175
Query: 152 NYVVPYEAQXXXXXXXXXXXXXXXXXXXXXSEXXXXXXXXXXXXXXXXPDFSSFTAAQAG 211
YV + P ++ A +G
Sbjct: 176 PYV--------------EKLVRSSPHGKHGNRNSNSYGIPEPAHAXAQPQTTTPLPAVSG 221
Query: 212 TPKGK-KPEIATVLAPYTATSSEQ----------LSLSRGQLIMIRKKTTTGWWEGELQA 260
+P P +T P A + ++ L+L G ++ + + G WEGE+
Sbjct: 222 SPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN- 280
Query: 261 KGKKRQVGWFPASYVKVM 278
G+K G FP ++VK+
Sbjct: 281 -GRK---GLFPFTHVKIF 294
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 39 RRYRAIYEFVSR----NGD---ELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
RR A+Y++ R N D EL+F GDII V + E G+ GEL GQ G P ++
Sbjct: 8 RRMVALYDYDPRESSPNVDVEAELTFCTGDIITV-FGEIDEDGFYYGELNGQKGLVPSNF 66
Query: 92 VE 93
+E
Sbjct: 67 LE 68
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 94 PCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG--TIGDRTGLFP 150
P TG V ++A Y Y++ DL+F + E + E DWW ++G P
Sbjct: 20 PTGLTGGVT--IFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIP 77
Query: 151 SNYVVP 156
SNYVVP
Sbjct: 78 SNYVVP 83
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
I L Y A ++E LS +G+ I T WWE A GK G+ P++YV
Sbjct: 29 IFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKS---GYIPSNYV 81
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCD 96
+ A+Y++ +R ++LSF+ G+ + N E W G++G+ P +YV P D
Sbjct: 30 FVALYDYEARTTEDLSFKKGERFQII--NNTEGDWWEARSIATGKSGYIPSNYVVPAD 85
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYEA 159
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P ++
Sbjct: 4 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVDS 60
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ +R D+LSF G+ + N+ G W A L G+TG+ P +YV P D
Sbjct: 4 FVALYDYEARTEDDLSFHKGEKFQI---LNSSEGDWWEARSLTTGETGYIPSNYVAPVD 59
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVP 156
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P
Sbjct: 3 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAP 56
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGEL-RGQTGWFPESYVEPC 95
+ A+Y++ +R D+LSF G+ + N+ G W A L G+TG+ P +YV P
Sbjct: 3 FVALYDYEARTEDDLSFHKGEKFQI---LNSSEGDWWEARSLTTGETGYIPSNYVAPV 57
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVP 156
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P
Sbjct: 7 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAP 60
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ +R D+LSF G+ + N+ G W A L G+TG+ P +YV P D
Sbjct: 7 FVALYDYEARTEDDLSFHKGEKFQI---LNSSEGDWWEARSLTTGETGYIPSNYVAPVD 62
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
L Y A ++L+ + +I +K GWW G+ G K+Q+ WFP++YV+ M
Sbjct: 12 LFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY---GGKKQL-WFPSNYVEEM 62
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGDRTGL-FPSNYV 154
A + Y + +LTF + +I V K+E WW G G + L FPSNYV
Sbjct: 11 ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYV 59
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVP 156
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P
Sbjct: 4 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAP 57
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ +R D+LSF G+ + N+ G W A L G+TG+ P +YV P D
Sbjct: 4 FVALYDYEARTEDDLSFHKGEKFQI---LNSSEGDWWEARSLTTGETGYIPSNYVAPVD 59
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+G S +Y + + S++ DE+ F+ G + V +++N E GW G+ GW P SY+
Sbjct: 3 SGSSGEEKYVTVQPYTSQSKDEIGFEKGVTVEV-IRKNLE-GWWYIRYLGKEGWAPASYL 60
Query: 93 EPCDETG 99
+ ++G
Sbjct: 61 KKAKDSG 67
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
E + PYT+ S +++ +G + + +K GWW ++ GK+ GW PASY+K
Sbjct: 9 EKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWW--YIRYLGKE---GWAPASYLK 61
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 36.2 bits (82), Expect = 0.021, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
A ++F + DELSF+ G I+ + + + W EL G+ G P +Y+E
Sbjct: 5 AKHDFSATADDELSFRKGQILKI-LNMEDDSNWYRAELDGKEGLIPSNYIE 54
Score = 35.4 bits (80), Expect = 0.040, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 154
IA + + +T +L+F + +++ + E+D W+ + + GL PSNY+
Sbjct: 4 IAKHDFSATADDELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYI 53
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV-------EP 94
A+++ V+ + EL F+ GD+I V N E W G + GWFP S+V EP
Sbjct: 40 EALWDHVTMDDQELGFKAGDVIEVMDATNRE--WWWGRVADGEGWFPASFVRLRVNQDEP 97
Query: 95 CDE 97
D+
Sbjct: 98 ADD 100
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
A L + ++L G +I + T WW G + A G+ GWFPAS+V++
Sbjct: 38 CAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRV-ADGE----GWFPASFVRL 90
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
A + + + + +L F +VI V N +WW G + D G FP+++V
Sbjct: 41 ALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 88
>pdb|1ZUU|A Chain A, Crystal Structure Of The Yeast Bzz1 First Sh3 Domain At
0.97-A Resolution
Length = 58
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW--LAGELRGQTGWFPESYV 92
+ +Y +V ++ DE++ PGD I + V ++ GW + + G+TG P +Y+
Sbjct: 5 KVLYAYVQKDDDEITITPGDKISL-VARDTGSGWTKINNDTTGETGLVPTTYI 56
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPE---SYVE 93
+R A+Y+F N +EL GDI+ + K GWL E +TG PE SY++
Sbjct: 6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQ--GWLVAENESGSKTGLVPEEFVSYIQ 63
Query: 94 P 94
P
Sbjct: 64 P 64
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYE 158
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P +
Sbjct: 18 FVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVD 73
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ + D+LSF G+ + N+ G W A L G+TG+ P +YV P D
Sbjct: 18 FVALYDYEAWTEDDLSFHKGEKFQI---LNSSEGDWWEARSLTTGETGYIPSNYVAPVD 73
>pdb|1BB9|A Chain A, Crystal Structure Of The Sh3 Domain From Rat Amphiphysin 2
Length = 115
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 13/67 (19%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE---PGWLAG----------ELRGQTGW 86
+ +A +++ + + DEL + GD+++V QN E GWL G EL G
Sbjct: 46 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGV 105
Query: 87 FPESYVE 93
FPE++ E
Sbjct: 106 FPENFTE 112
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRT------GLFPSNYVVPYE 158
Y+ + + S +L+F +V +V +KE WW T+ D G P NY+ E
Sbjct: 13 YVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE 71
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+Y +++F SR +ELSF+ GD+ V K+ E W A L G + YV
Sbjct: 12 KYVGLWDFKSRTDEELSFRAGDVFHVARKE--EQWWWATLLDEAGGAVAQGYV 62
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYV 92
+R A+Y+F N +EL GDI+ + K GWL E +TG PE +V
Sbjct: 2 QRAVALYDFEPENDNELRLAEGDIVFISYKHG--QGWLVAENESGSKTGLVPEEFV 55
>pdb|2DMO|A Chain A, Refined Solution Structure Of The 1st Sh3 Domain From
Human Neutrophil Cytosol Factor 2 (Ncf-2)
Length = 68
Score = 35.4 bits (80), Expect = 0.033, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
+R ++ FV +EL PG+I+ V K N W GQ G P +Y+EP
Sbjct: 10 HRVLFGFVPETKEELQVMPGNIVFVLKKGN--DNWATVMFNGQKGLVPCNYLEP 61
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 35.4 bits (80), Expect = 0.037, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 154
IA + + +T +L+F + +++ + E+D W+ + + GL PSNY+
Sbjct: 4 IAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYI 53
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 95 CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNY 153
DETG+ E + Y Y P +LT + +++ + N DWW + R G P+ Y
Sbjct: 1 MDETGK---ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAY 57
Query: 154 V 154
+
Sbjct: 58 L 58
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVP 156
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P
Sbjct: 4 FVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAP 57
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPC 95
+ A+Y++ + D+LSF G+ + N+ G W A L G+TG+ P +YV P
Sbjct: 4 FVALYDYEAWTEDDLSFHKGEKFQI---LNSSEGDWWEARSLTTGETGYIPSNYVAPV 58
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTG---TIGDRTGLFPSNYVVPYEA 159
++A Y Y++T DL+F++ E + + DWW T G+ TG PSNYV P ++
Sbjct: 9 FVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGE-TGYIPSNYVAPVDS 65
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 214 KGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPAS 273
+G + L Y AT LS +G+ I + WWE G + G+ P++
Sbjct: 2 RGSGVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTG---ETGYIPSN 58
Query: 274 YV 275
YV
Sbjct: 59 YV 60
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ + +LSF G+ + PG W A L G+TG+ P +YV P D
Sbjct: 9 FVALYDYNATRWTDLSFHKGEKFQI---LEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 67/182 (36%), Gaps = 29/182 (15%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPYEAQX 161
EY A + ++ + DL F + +++ + K E WW + + G+ P YV Y
Sbjct: 135 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRP-- 192
Query: 162 XXXXXXXXXXXXXXXXXXXXSEXXXXXXXXXXXXXXXXPDFSSFTAAQAGTP---KGKKP 218
S P+ + TP P
Sbjct: 193 ---------------ASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGP 237
Query: 219 EIATVLAPYTATSSEQ--LSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
A V+ + ++ L+L G+L+ + K +G WEGE GK+ G FP ++V+
Sbjct: 238 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGE--CNGKR---GHFPFTHVR 292
Query: 277 VM 278
++
Sbjct: 293 LL 294
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPE-EQWWNAEDSEGKRGMIPVPYVE 188
>pdb|2KXC|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For
Irtks-Sh3 And Espfu- R47 Complex
pdb|2LNH|B Chain B, Enterohaemorrhagic E. Coli (Ehec) Exploits A Tryptophan
Switch To Hijack Host F-Actin Assembly
Length = 67
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 51 NGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCDE 97
N LSF GD+I + + + + GWL GE + GWFP SY + +E
Sbjct: 20 NKTLLSFAQGDVITLLIPEEKD-GWLYGEHDVSKARGWFPSSYTKLLEE 67
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 216 KKPEIATVLAPYTATSSEQL-SLSRGQLI-MIRKKTTTGWWEGELQAKGKKRQVGWFPAS 273
KK ++ T+ P+TA S++ L S ++G +I ++ + GW GE + GWFP+S
Sbjct: 5 KKQKVKTIF-PHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVS---KARGWFPSS 60
Query: 274 YVKVM 278
Y K++
Sbjct: 61 YTKLL 65
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYV 154
+A Y Y S P DL+F + + + V ++ +WW ++ R G PSNYV
Sbjct: 7 VALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV 56
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT-GWFPESYVEPCD 96
A+Y++VS + D+LSFQ GD MV ++++ E W A L + G+ P +YV D
Sbjct: 8 ALYDYVSWSPDDLSFQKGD-QMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 60
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 35.0 bits (79), Expect = 0.055, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAE--PGWLAGELRGQTGWFP 88
+A+Y+ V+ + DELSF+ GDI+ V ++Q+ + GW L G+ G P
Sbjct: 7 KALYDNVAESPDELSFRKGDIMTV-LEQDTQGLDGWWLCSLHGRQGIVP 54
Score = 27.7 bits (60), Expect = 7.2, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKE----NDWWTGTIGDRTGLFPSN 152
A Y + P +L+F + +++ V +++ + WW ++ R G+ P N
Sbjct: 8 ALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGN 56
>pdb|1RUW|A Chain A, Crystal Structure Of The Sh3 Domain From S. Cerevisiae
Myo3
Length = 69
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 40 RYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGW-LAGELRG-QTGWFPESYVEPCD 96
++ A Y+F S + EL + GDI+ + ++ GW LA L G + GW P +Y+ P
Sbjct: 4 KFEAAYDFPGSGSSSELPLKKGDIVFI--SRDEPSGWSLAKLLDGSKEGWVPTAYMTPYK 61
Query: 97 ETGEVVP 103
+T VP
Sbjct: 62 DTRNTVP 68
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 231 SSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
SS +L L +G ++ I + +GW +L K+ GW P +Y+
Sbjct: 16 SSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKE---GWVPTAYM 57
>pdb|1VA7|A Chain A, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|B Chain B, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|C Chain C, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|D Chain D, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
Length = 70
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 40 RYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGW-LAGELRG-QTGWFPESYVEPCD 96
++ A Y+F S + EL + GDI+ + ++ GW LA L G + GW P +Y+ P
Sbjct: 5 KFEAAYDFPGSGSSSELPLKKGDIVFI--SRDEPSGWSLAKLLDGSKEGWVPTAYMTPYK 62
Query: 97 ETGEVVP 103
+T VP
Sbjct: 63 DTRNTVP 69
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
GK P+ + SS +L L +G ++ I + +GW +L K+ GW P +Y
Sbjct: 1 GKDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKE---GWVPTAY 57
Query: 275 V 275
+
Sbjct: 58 M 58
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGEL-RGQTGWFPESYVEPCD 96
+ A+Y++ +R D+LSF G+ + N+ G W A L G+TG+ P Y+ P D
Sbjct: 8 FEALYDYEARTEDDLSFHKGEKFQI---LNSSEGDWWEARSLTTGETGYIPSIYLAPVD 63
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVP 156
A Y Y++ DL+F++ E + E DWW T G+ TG PS Y+ P
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSIYLAP 61
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 222 TVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG 281
V++ Y + +LSL G+++ + +K +GWW + GW PA+Y++ G
Sbjct: 12 VVVSNYKKQENSELSLQAGEVVDVIEKNESGWW-----FVSTSEEQGWVPATYLEAQNSG 66
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+G S +Y + + + ELS Q G+++ V K E GW + GW P +Y+
Sbjct: 3 SGSSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKN--ESGWWFVSTSEEQGWVPATYL 60
Query: 93 E 93
E
Sbjct: 61 E 61
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
E Y+ Y E +L+ EV+ V +K E+ WW + + G P+ Y+
Sbjct: 9 EQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYL 60
>pdb|2BTT|A Chain A, Nmr Structure Of Myo3-Sh3 Domain From Myosin-Type I From
S. Cerevisiae
Length = 69
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 40 RYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGW-LAGELRG-QTGWFPESYVEPCD 96
++ A Y+F S + EL + GDI+ + ++ GW LA L G + GW P +Y+ P
Sbjct: 4 KFEAAYDFPGSGSSSELPLKKGDIVFI--SRDEPSGWSLAKLLDGSKEGWVPTAYMTPYK 61
Query: 97 ETGEVVP 103
+T VP
Sbjct: 62 DTRNTVP 68
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
A+++ V+ + EL F+ GD+I V N E W G + GWFP S+V
Sbjct: 72 ALWDHVTXDDQELGFKAGDVIEVXDATNRE--WWWGRVADGEGWFPASFV 119
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
A L + ++L G +I + T WW G + A G+ GWFPAS+V++
Sbjct: 69 CAEALWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRV-ADGE----GWFPASFVRL 121
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine
Kinase, 20 Structures
Length = 58
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
A+Y+++ N ++L + GD + + N P W A + GQ G+ P +YV
Sbjct: 6 ALYDYMPMNANDLQLRKGDEYFILEESNL-PWWRARDKNGQEGYIPSNYV 54
>pdb|1MV3|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 213
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 13/67 (19%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE---PGWLAG----------ELRGQTGW 86
+ +A +++ + + DEL + GD+++V QN E GWL G +L G
Sbjct: 144 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGV 203
Query: 87 FPESYVE 93
FPE++ E
Sbjct: 204 FPENFTE 210
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYV 154
+A Y Y S P DL+F + + + V ++ +WW ++ R G PSNYV
Sbjct: 7 VALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV 56
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT-GWFPESYVEPCD 96
A+Y++VS + D+LSFQ GD MV ++++ E W A L + G+ P +YV D
Sbjct: 8 ALYDYVSWSPDDLSFQKGD-QMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 60
>pdb|1TG0|A Chain A, 0.97-A Structure Of The Sh3 Domain Of Bbc1
pdb|1ZUK|A Chain A, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From Las17
pdb|1ZUK|B Chain B, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From Las17
Length = 68
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 226 PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG 279
PY + + L+ + Q I++ W+ GE Q G FP S+V V G
Sbjct: 15 PYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQG 68
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKE------NDWWTGTI-GDRTGLFPSNYVVP 156
+ A + Y++ +LT + + + V ++ WWTG + R G+FPSNYV P
Sbjct: 32 WTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP 89
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 212 TPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT-----GWWEGELQAKGKKRQ 266
TP G + T + Y A E+L+L RG + + + GWW G+L + +
Sbjct: 26 TPAGP---VWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSG----R 78
Query: 267 VGWFPASYV 275
VG FP++YV
Sbjct: 79 VGVFPSNYV 87
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNA---EPGWLAGEL-RGQTGWFPESYVEP 94
A++++ + +EL+ + GD + V + A + GW G+L G+ G FP +YV P
Sbjct: 34 AVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP 89
>pdb|1PNJ|A Chain A, Solution Structure And Ligand-Binding Site Of The Sh3
Domain Of The P85alpha Subunit Of Phosphatidylinositol
3- Kinase
pdb|2PNI|A Chain A, Solution Structure And Ligand-Binding Site Of The Sh3
Domain Of The P85alpha Subunit Of Phosphatidylinositol
3- Kinase
Length = 86
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 15/69 (21%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPV----------KQNAEP---GWLAG--ELRGQT 84
+YRA+Y++ +++ GDI+ V Q A+P GWL G E G+
Sbjct: 9 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEAKPEEIGWLNGYNETTGER 68
Query: 85 GWFPESYVE 93
G FP +YVE
Sbjct: 69 GDFPGTYVE 77
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
A+++ V+ + EL F+ GD+I V N E W G + GWFP S+V
Sbjct: 35 ALWDHVTMDDQELGFKAGDVIEVMDATNRE--WWWGRVADGEGWFPASFV 82
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
A L + ++L G +I + T WW G + A G+ GWFPAS+V++
Sbjct: 32 CAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRV-ADGE----GWFPASFVRL 84
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
A + + + + +L F +VI V N +WW G + D G FP+++V
Sbjct: 35 ALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 82
>pdb|1WDX|A Chain A, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|B Chain B, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|C Chain C, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|D Chain D, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
Length = 69
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 226 PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG 279
PY + + L+ + Q I++ W+ GE Q G FP S+V V G
Sbjct: 16 PYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQG 69
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYV 154
+A Y Y++ DL+F + + + V ++ +WW ++ R G PSNYV
Sbjct: 13 VALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV 62
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT-GWFPESYVEPCD 96
A+Y++ + + ++LSFQ GD MV ++++ E W A L + G+ P +YV D
Sbjct: 14 ALYDYEAIHHEDLSFQKGD-QMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 66
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYV 154
+A Y Y++ DL+F + + + V ++ +WW ++ R G PSNYV
Sbjct: 4 VALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV 53
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT-GWFPESYVEPCD 96
A+Y++ + + ++LSFQ GD MV ++++ E W A L + G+ P +YV D
Sbjct: 5 ALYDYEAIHHEDLSFQKGD-QMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 57
>pdb|3I5R|A Chain A, Pi3k Sh3 Domain In Complex With A Peptide Ligand
pdb|3I5S|A Chain A, Crystal Structure Of Pi3k Sh3
pdb|3I5S|B Chain B, Crystal Structure Of Pi3k Sh3
pdb|3I5S|C Chain C, Crystal Structure Of Pi3k Sh3
pdb|3I5S|D Chain D, Crystal Structure Of Pi3k Sh3
Length = 83
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPV----------KQNAEP---GWLAG--ELRGQT 84
+YRA+Y++ +++ GDI+ V Q A P GWL G E G+
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 85 GWFPESYVE 93
G FP +YVE
Sbjct: 67 GDFPGTYVE 75
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
E +A Y Y ++T + +++ + N DWW + DR G P+ YV
Sbjct: 1 KELVLALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 53
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
A+Y++ + E++ + GDI+ + N + W E+ + G+ P +YV+ D
Sbjct: 6 ALYDYQEKGDSEVTMKKGDILTLLNSTNKD--WWKVEVNDRQGFVPAAYVKKLD 57
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYV 154
+A Y Y++ DL+F + + + V ++ +WW ++ R G PSNYV
Sbjct: 12 VALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV 61
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT-GWFPESYVEPCD 96
A+Y++ + + ++LSFQ GD MV ++++ E W A L + G+ P +YV D
Sbjct: 13 ALYDYEAIHHEDLSFQKGD-QMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 65
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYV 154
+A Y Y++ DL+F + + + V ++ +WW ++ R G PSNYV
Sbjct: 6 VALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV 55
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT-GWFPESYVEPCD 96
A+Y++ + + ++LSFQ GD MV ++++ E W A L + G+ P +YV D
Sbjct: 7 ALYDYEAIHHEDLSFQKGD-QMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 59
>pdb|2FRY|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Nck2
Adaptor Protein
Length = 61
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG-WLAGELRGQTGWFPESYV 92
+ +Y F S +EL+F+ G+ + V K +P W RGQ G P++YV
Sbjct: 6 QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 57
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTG--WWEGELQAKGKKRQVGWFPASYVK 276
+ L P+++ + E+L+ +G+ + + +K WW + K + QVG P +YV
Sbjct: 3 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWW----KCKNARGQVGLVPKNYVV 58
Query: 277 VM 278
V+
Sbjct: 59 VL 60
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM
NMR RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW--LAGELRGQTGWFPESYVEPCD 96
+ A+Y++ +R D+LSF G+ + ++E W + G+TG+ P Y+ P D
Sbjct: 10 FEALYDYEARTEDDLSFHKGE--KFQILNSSEGDWWEVRSLTTGETGYIPSPYLAPVD 65
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYV-TKKENDWW---TGTIGDRTGLFPSNYVVP 156
A Y Y++ DL+F++ E + E DWW + T G+ TG PS Y+ P
Sbjct: 12 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGE-TGYIPSPYLAP 63
>pdb|2O88|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|2O88|B Chain B, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
Length = 58
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 3 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSAYITPVN 57
>pdb|1PKS|A Chain A, Structure Of The Pi3k Sh3 Domain And Analysis Of The Sh3
Family
pdb|1PKT|A Chain A, Structure Of The Pi3k Sh3 Domain And Analysis Of The Sh3
Family
Length = 79
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPV----------KQNAEP---GWLAG--ELRGQT 84
+YRA+Y++ +++ GDI+ V Q A P GWL G E G+
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 85 GWFPESYVE 93
G FP +YVE
Sbjct: 67 GDFPGTYVE 75
>pdb|1BBZ|A Chain A, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|C Chain C, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|G Chain G, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|E Chain E, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
Length = 58
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 3 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITPVN 57
>pdb|2VKN|A Chain A, Yeast Sho1 Sh3 Domain Complexed With A Peptide From Pbs2
Length = 70
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 119 DLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYV 154
+++F Q+E++ V+ E WW + TG+ PSNYV
Sbjct: 23 EISFEQNEILQVSDIEGRWWKARRANGETGIIPSNYV 59
>pdb|1JU5|C Chain C, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 61
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 5 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITPVN 59
>pdb|3EG0|A Chain A, Crystal Structure Of The N114t Mutant Of Abl-Sh3 Domain
Length = 63
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 8 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSTYITPVN 62
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In
Rho-Gtpase-Activating Protein 4
Length = 76
Score = 33.1 bits (74), Expect = 0.16, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
A + + R ELSF+ GD++ + + A W GE G G P Y+
Sbjct: 15 ACFAYTGRTAQELSFRRGDVLR--LHERASSDWWRGEHNGMRGLIPHKYI 62
Score = 33.1 bits (74), Expect = 0.18, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG 280
YT ++++LS RG ++ + ++ ++ WW GE G P Y+ + G
Sbjct: 19 YTGRTAQELSFRRGDVLRLHERASSDWWRGEHNG-----MRGLIPHKYITLPAG 67
Score = 29.6 bits (65), Expect = 1.8, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
+A + Y +L+F + +V+ + ++ +DWW G GL P Y+
Sbjct: 14 VACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYI 62
>pdb|1PHT|A Chain A, Phosphatidylinositol 3-Kinase P85-Alpha Subunit Sh3
Domain, Residues 1-85
Length = 85
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPV----------KQNAEP---GWLAG--ELRGQT 84
+YRA+Y++ +++ GDI+ V Q A P GWL G E G+
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 85 GWFPESYVE 93
G FP +YVE
Sbjct: 67 GDFPGTYVE 75
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYV 154
+A Y Y++ DL+F + + + V ++ +WW ++ R G PSNYV
Sbjct: 13 VALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV 62
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT-GWFPESYVEPCD 96
A+Y++ + + ++LSFQ GD MV ++++ E W A L + G+ P +YV D
Sbjct: 14 ALYDYEAIHHEDLSFQKGD-QMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 66
>pdb|1ABO|A Chain A, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABO|B Chain B, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABQ|A Chain A, Crystal Structure Of The Unliganded Abl Tyrosine Kinase
Sh3 Domain
Length = 62
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 7 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITPVN 61
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 90 SYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGL 148
S V+ T EV+ IA + Y + + +L ++E +++ WW +RTG
Sbjct: 21 SLVKNLHMTEEVI---VIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGY 77
Query: 149 FPSNYV 154
PSNYV
Sbjct: 78 VPSNYV 83
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 11 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITPVN 65
>pdb|3EG3|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-sh3 Domain
pdb|3EGU|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Length = 63
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 8 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSAYITPVN 62
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG 280
+ + ++S +G+ I + ++ W+EG + G RQ G FP +YV V+ G
Sbjct: 16 FNGDTQVEMSFRKGERITLLRQVDENWYEGRI--PGTSRQ-GIFPITYVDVISG 66
>pdb|1U5S|A Chain A, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain
And Pinch-1 Lim4 Domain
Length = 71
Score = 33.1 bits (74), Expect = 0.20, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWL-AGELRGQTGWFPESYV 92
+ +Y F S +EL+F+ G+ + V K +P W RGQ G P++YV
Sbjct: 10 QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 61
Score = 32.7 bits (73), Expect = 0.25, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTG--WWEGELQAKGKKRQVGWFPASYVKV 277
+ L P+++ + E+L+ +G+ + + +K WW + K + QVG P +YV V
Sbjct: 8 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWW----KCKNARGQVGLVPKNYVVV 63
Query: 278 MGGG 281
+ G
Sbjct: 64 LSDG 67
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
Length = 86
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYV 154
+A Y Y++ DL+F + + + V ++ +WW ++ R G PSNYV
Sbjct: 29 VALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV 78
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT-GWFPESYVEPCD 96
A+Y++ + + ++LSFQ GD MV ++++ E W A L + G+ P +YV D
Sbjct: 30 ALYDYEAIHHEDLSFQKGD-QMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 82
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 212 TPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEG-ELQAKGKKRQVGWF 270
P ++ + Y A +++LSL G + I + T GW+ G L+ K KK G F
Sbjct: 5 VPTKREEKYGVAFYNYDARGADELSLQIGDTVHILE-TYEGWYRGYTLRKKSKK---GIF 60
Query: 271 PASYVKV 277
PASY+ +
Sbjct: 61 PASYIHL 67
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAG---ELRGQTGWFPESYVE 93
A Y + +R DELS Q GD + + GW G + + G FP SY+
Sbjct: 16 AFYNYDARGADELSLQIGDTVHIL---ETYEGWYRGYTLRKKSKKGIFPASYIH 66
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI---GDRTGLFPSNYVVPYEA 159
+Y +A Y YD+ +L+ + +++ + W+ G + G+FP++Y+ EA
Sbjct: 12 KYGVAFYNYDARGADELSLQIGDTVHILETYEGWYRGYTLRKKSKKGIFPASYIHLKEA 70
>pdb|1AWO|A Chain A, The Solution Nmr Structure Of Abl Sh3 And Its
Relationship To Sh2 In The Sh(32) Construct, 20
Structures
Length = 62
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P
Sbjct: 8 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITP 60
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 34 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
G +EY RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 1 GSAEY--VRALFDFNGNDEEDLPFKKGDILRIRDKPE-EQWWNAEDSEGKRGMIPVPYVE 57
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPY 157
EY A + ++ + DL F + +++ + K E WW + + G+ P YV Y
Sbjct: 4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 59
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKE--NDWWTG---TIGDRTGLFPSNYVVPYEA 159
++A Y Y + DL+F++ E + DWW T G+ TG PSNYV P ++
Sbjct: 9 FVALYDYQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGE-TGYIPSNYVAPVDS 66
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ + +LSF G+ + W A L G+TG+ P +YV P D
Sbjct: 9 FVALYDYQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGETGYIPSNYVAPVD 65
>pdb|1WX6|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck2
Length = 91
Score = 32.7 bits (73), Expect = 0.27, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWL-AGELRGQTGWFPESYV 92
+ +Y F S +EL+F+ G+ + V K +P W RGQ G P++YV
Sbjct: 21 QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 72
Score = 32.3 bits (72), Expect = 0.34, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTG--WWEGELQAKGKKRQVGWFPASYVKV 277
+ L P+++ + E+L+ +G+ + + +K WW + K + QVG P +YV V
Sbjct: 19 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWW----KCKNARGQVGLVPKNYVVV 74
Query: 278 MGGG 281
+ G
Sbjct: 75 LSDG 78
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 46 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITPVN 100
>pdb|2IIM|A Chain A, Sh3 Domain Of Human Lck
Length = 62
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG---TIGDRTGLFPSNYV 154
IA + Y+ + GDL F + E + + ++ +WW T G + G P N+V
Sbjct: 10 IALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTG-QEGFIPFNFV 59
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 43 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITPVN 97
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 85 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITPVN 139
>pdb|1MUZ|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
pdb|1MV0|B Chain B, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 81
Score = 32.3 bits (72), Expect = 0.33, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 13/67 (19%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE---PGWLAG----------ELRGQTGW 86
+ +A +++ + + DEL + GD+++V QN E GWL G +L G
Sbjct: 12 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGV 71
Query: 87 FPESYVE 93
FPE++ E
Sbjct: 72 FPENFTE 78
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQN-AEPGWLAGELRGQTGWFPESY 91
A++++ + GDELSF+ G+ + V + E W L GQ G+ P +Y
Sbjct: 159 ALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 114 STEPGD-LTFNQDEVIYVTKK----ENDWWTGTIGDRTGLFPSNY 153
S E GD L+F + E + V ++ E DWW + + G P NY
Sbjct: 164 SAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 98 TGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGLFPSNYV 154
T EV+ IA + Y + + +L ++E +++ WW +RTG PSNYV
Sbjct: 2 TEEVIV---IAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYV 56
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 18 RALFDFNGNDEEDLPFKKGDILRIRDKPE-EQWWNAEDSEGKRGMIPVPYVE 68
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPY 157
EY A + ++ + DL F + +++ + K E WW + + G+ P YV Y
Sbjct: 15 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 70
>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of
Kiaa1010 Protein [homo Sapiens]
Length = 79
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-----DWWTGTIGDRTGLFPSNYVVPYE 158
+ Y A Y + + P +L+ + ++ + + + ++ +WW + + G PSNY+ E
Sbjct: 14 QVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTE 73
Query: 159 A 159
+
Sbjct: 74 S 74
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMV----PVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
Y A+Y F +RN +ELS + + V N E W E+ G+ G+ P +Y+ +
Sbjct: 16 YFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTE--WWLAEVNGKKGYVPSNYIRKTE 73
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From
Oncogene Protein C-Crk
Length = 58
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKP-EEQWWNAEDSEGKRGMIPVPYVE 55
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPY 157
EY A + ++ + DL F + +++ + K E WW + + G+ P YV Y
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
Length = 57
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKP-EEQWWNAEDSEGKRGMIPVPYVE 55
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPY 157
EY A + ++ + DL F + +++ + K E WW + + G+ P YV Y
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
Length = 60
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 45 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEP 94
Y+F++ + DEL+ + GD + + + ++ W+ + G++G P ++EP
Sbjct: 9 YDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 7 RALFDFNGNDEEDLPFKKGDILRIRDKPE-EQWWNAEDSEGKRGMIPVPYVE 57
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPY 157
EY A + ++ + DL F + +++ + K E WW + + G+ P YV Y
Sbjct: 4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 59
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKP-EEQWWNAEDSEGKRGMIPVPYVE 55
>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like
Protein
Length = 88
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 235 LSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
L+L G ++ + + G WEGE+ G+K G FP ++VK+
Sbjct: 35 LALEVGDIVKVTRMNINGQWEGEVN--GRK---GLFPFTHVKIF 73
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 112 YDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRTGLFPSNYVVPYEAQ 160
YD T L +++ VT+ N W G + R GLFP +V ++ Q
Sbjct: 30 YDKTA---LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ 76
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG---TIGDRTGLFPSNYV 154
IA + Y+ + GDL F + E + + ++ +WW T G + G P N+V
Sbjct: 8 IALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTG-QEGFIPFNFV 57
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated
N- Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 4 RALFDFNGNDEEDLPFKKGDILRIRDKP-EEQWWNAEDSEGKRGMIPVPYVE 54
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 32.0 bits (71), Expect = 0.42, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQD-EVIYVTKKENDWWTGTIGDRTGLFPSNYVV 155
PE+ IA + Y +L+F + ++ + DWW G GL P Y+V
Sbjct: 6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59
Score = 31.6 bits (70), Expect = 0.55, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEG 256
PE A Y S+ +LS +G +++ + + WWEG
Sbjct: 6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEG 44
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 140 RALFDFNGNDEEDLPFKKGDILRIRDKPE-EQWWNAEDSEGKRGMIPVPYVE 190
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPY 157
EY A + ++ + DL F + +++ + K E WW + + G+ P YV Y
Sbjct: 137 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 192
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG---TIGDRTGLFPSNYVV 155
IA + Y+ + GDL F + E + + ++ +WW T G + G P N+V
Sbjct: 16 IALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTG-QEGFIPFNFVA 66
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPE-EQWWNAEDSEGKRGMIPVPYVE 188
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPY 157
EY A + ++ + DL F + +++ + K E WW + + G+ P YV Y
Sbjct: 135 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 190
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG---TIGDRTGLFPSNYVV 155
IA + Y+ + GDL F + E + + ++ +WW T G + G P N+V
Sbjct: 16 IALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTG-QEGFIPFNFVA 66
>pdb|1SPK|A Chain A, Solution Structure Of Rsgi Ruh-010, An Sh3 Domain From
Mouse Cdna
Length = 72
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 36 SEYRRYRAIYEFVSRNGDEL-SFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYV 92
S ++ + I+ + N L SF GD++ + + + + GWL GE GWFP SY
Sbjct: 5 SSGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKD-GWLYGEHDTTKARGWFPSSYT 63
Query: 93 E 93
+
Sbjct: 64 K 64
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 215 GKKPEIATVLAPYTATSSEQL-SLSRGQ-LIMIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
G + + P+TA +++ L S ++G L ++ + GW GE + GWFP+
Sbjct: 4 GSSGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTT---KARGWFPS 60
Query: 273 SYVKVMGG 280
SY K++ G
Sbjct: 61 SYTKLLSG 68
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
+ + ++S +G+ I + ++ W+EG + G RQ G FP +YV V+
Sbjct: 15 FNGDTQVEMSFRKGERITLLRQVDENWYEGRI--PGTSRQ-GIFPITYVDVI 63
>pdb|2EYX|A Chain A, C-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 67
Score = 31.6 bits (70), Expect = 0.60, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 229 ATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
A L+L G+L+ + K +G WEGE GK+ G FP ++V+++
Sbjct: 19 AYDKTALALEVGELVKVTKINVSGQWEGE--CNGKR---GHFPFTHVRLL 63
>pdb|1WXT|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Hypothetical Protein Flj21522
Length = 68
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
+ + +YEF +RN EL+ G+ + V +++ WL G++G+ P + +EP
Sbjct: 9 KMQVLYEFEARNPRELTVVQGE--KLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLS 63
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 110 YPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGLFPSNYVVPY 157
Y +++ P +LT Q E + V WW R+G PSN + P
Sbjct: 14 YEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPL 62
>pdb|3O5Z|A Chain A, Crystal Structure Of The Sh3 Domain From P85beta Subunit
Of Phosphoinositide 3-Kinase (Pi3k)
pdb|3O5Z|B Chain B, Crystal Structure Of The Sh3 Domain From P85beta Subunit
Of Phosphoinositide 3-Kinase (Pi3k)
Length = 90
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVP--------VKQNAEP-----GWLAG--ELRGQT 84
+YRA+Y F ++L PGD+++V V + E GW+ G E Q
Sbjct: 13 QYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQR 72
Query: 85 GWFPESYVE 93
G FP +YVE
Sbjct: 73 GDFPGTYVE 81
>pdb|2KT1|A Chain A, Solution Nmr Structure Of The Sh3 Domain From The
P85beta Subunit Of Phosphatidylinositol 3-Kinase From
H.Sapiens, Northeast Structural Genomics Consortium
Target Hr5531e
Length = 88
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVP--------VKQNAEP-----GWLAG--ELRGQT 84
+YRA+Y F ++L PGD+++V V + E GW+ G E Q
Sbjct: 8 QYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQR 67
Query: 85 GWFPESYVE 93
G FP +YVE
Sbjct: 68 GDFPGTYVE 76
>pdb|1YP5|A Chain A, Yeast Myo5 Sh3 Domain, Tetragonal Crystal Form
pdb|1ZUY|A Chain A, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
pdb|1ZUY|B Chain B, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
Length = 58
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 231 SSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
S +L L +G +I I ++ +GW G+L K+ GW P +Y+K
Sbjct: 14 SPSELPLKKGDVIYITREEPSGWSLGKLLDGSKE---GWVPTAYMK 56
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 30.8 bits (68), Expect = 0.83, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 45 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEP 94
Y+F++ + DEL+ + GD + + + ++ W+ + G++G P ++EP
Sbjct: 13 YDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 63
>pdb|2FPD|A Chain A, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|B Chain B, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|C Chain C, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|D Chain D, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPE|A Chain A, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|B Chain B, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|C Chain C, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|D Chain D, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|E Chain E, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|F Chain F, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|G Chain G, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|H Chain H, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
Length = 62
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAG--ELRGQTGWFPESY 91
+RAI+ FV R+ DEL + D ++V ++ AE W G G FP Y
Sbjct: 6 HRAIFRFVPRHEDELELEVDDPLLVELQ--AEDYWYEAYNXRTGARGVFPAYY 56
>pdb|2GGR|A Chain A, Solution Structure Of The C-Terminal Sh3 Domain Of C-Crkii
Length = 76
Score = 30.8 bits (68), Expect = 0.99, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 229 ATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
A L+L G+L+ + K +G WEGE K G FP ++V+++
Sbjct: 22 AYDKTALALEVGELVKVTKINVSGQWEGECNGKR-----GHFPFTHVRLL 66
>pdb|1KIK|A Chain A, Sh3 Domain Of Lymphocyte Specific Kinase (Lck)
Length = 57
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG---TIGDRTGLFPSNYV 154
IA + Y+ + GDL F + E + + ++ +WW T G + G P N+V
Sbjct: 4 IALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTG-QEGFIPFNFV 53
>pdb|2JW4|A Chain A, Nmr Solution Structure Of The N-Terminal Sh3 Domain Of
Human Nckalpha
Length = 72
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGLFPSNYV 154
+A + Y + + +L ++E +++ WW ++TG PSNYV
Sbjct: 11 VAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYV 59
>pdb|1H92|A Chain A, Sh3 Domain Of Human Lck Tyrosine Kinase
Length = 63
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG---TIGDRTGLFPSNYV 154
IA + Y+ + GDL F + E + + ++ +WW T G + G P N+V
Sbjct: 10 IALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTG-QEGFIPFNFV 59
>pdb|2FPF|A Chain A, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|B Chain B, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|C Chain C, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|D Chain D, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
Length = 71
Score = 30.4 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 34 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWL-AGELR-GQTGWFPESY 91
G + +RAI+ FV R+ DEL + D ++V ++ AE W A +R G G FP Y
Sbjct: 2 GEEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQ--AEDYWYEAYNMRTGARGVFPAYY 59
>pdb|2JS2|A Chain A, Solution Structure Of First Sh3 Domain Of Adaptor Nck
Length = 63
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGLFPSNYV 154
+A + Y + + +L ++E +++ WW ++TG PSNYV
Sbjct: 10 VAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYV 58
>pdb|3RNJ|A Chain A, Crystal Structure Of The Sh3 Domain From Irsp53 (Baiap2)
Length = 67
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 220 IATVLAPYTATSSEQLSLSRGQLI-MIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
+ + + +S LS G LI ++ + GW GE + K + GWFP SY +V+
Sbjct: 10 VKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESE---KTKMRGWFPFSYTRVL 66
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At S19-P20
Length = 63
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 117 PGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 3 PREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 41
>pdb|2L3P|A Chain A, Structure Of The Prolyl Cis Isomer Of The Crk Protein
pdb|2L3Q|A Chain A, Structure Of The Prolyl Trans Isomer Of The Crk Protein
Length = 78
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 229 ATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
A L+L G+L+ + K +G WEGE K G FP ++V+++
Sbjct: 32 AYDKTALALEVGELVKVTKINMSGQWEGECNGKR-----GHFPFTHVRLL 76
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related
Kinase
Length = 77
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR------GQ--TGWFPESYV 92
+ A++++ +R ++LSF+ GD + V + + E WLA L GQ G+ P +YV
Sbjct: 10 FVALFDYQARTAEDLSFRAGDKLQV-LDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYV 68
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WW---------TGTIGDRTGLFPSNY 153
+Y++A + Y + DL+F + + V ++ WW TG G PSNY
Sbjct: 8 QYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNY 67
Query: 154 VV 155
V
Sbjct: 68 VA 69
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYV 154
+A Y Y S DL+F + + + V ++ +WW ++ R G PSNYV
Sbjct: 7 VALYDYYSPFSWDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV 56
>pdb|2EKH|A Chain A, Solution Structures Of The Sh3 Domain Of Human Kiaa0418
Length = 80
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 106 YIAAYPYDSTEPGDLTFNQD-EVIYVTKKENDWWTGTIGDRTGLFPSNYVV 155
Y+ Y + +++F EV + K+E+ WW G+ G PS+Y+V
Sbjct: 11 YMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLV 61
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 117 PGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 5 PREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 43
>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
Fut8
Length = 526
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCDET 98
AIY R DE+ +PGDII V N G+ G R G+TG +P V ET
Sbjct: 447 AIYAHQPRTADEIPMEPGDII--GVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIET 502
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQD-EVIYVTKKENDWWTGTIGDRTGLFPSNYVV 155
IA + Y +L+F + ++ + +DWW G GL P Y+V
Sbjct: 13 IAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIV 62
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
Y ++ +LS +G +++ ++ + WWEG G P Y+ V
Sbjct: 18 YVGRTARELSFKKGASLLLYQRASDDWWEGRHNGID-----GLIPHQYIVV 63
>pdb|4DEX|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel
Beta-2 Subunit In Complex With The Cav2.2 I-Ii Linker
Length = 339
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 106 YIAAYPYDSTEPG-DLTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPS 151
Y AA+ D PG ++F + ++V +K NDWW G + G G PS
Sbjct: 49 YSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS 99
>pdb|1T3L|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core In Complex With
Alpha1 Interaction Domain
pdb|1T3S|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core
Length = 337
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 106 YIAAYPYDSTEPG-DLTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPS 151
Y AA+ D PG ++F + ++V +K NDWW G + G G PS
Sbjct: 47 YSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS 97
>pdb|4DEY|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel
Beta-2 Subunit In Complex With The Cav1.2 I-Ii Linker
Length = 337
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 106 YIAAYPYDSTEPG-DLTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPS 151
Y AA+ D PG ++F + ++V +K NDWW G + G G PS
Sbjct: 47 YSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS 97
>pdb|3UDS|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp.
pdb|3UDS|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp.
pdb|3UDT|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip5.
pdb|3UDT|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip5
Length = 493
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 94 PCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNY 153
P DE+ ++V EY IAA D + ++ + N W + GD L P+N
Sbjct: 383 PLDESLKIVKEYLIAATAKDCS-----------IMISFQSRNAWDSEPSGDYVSLKPTNQ 431
Query: 154 VVPYEAQ 160
Y+
Sbjct: 432 TFDYKVH 438
>pdb|4AXD|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase In Complex
With Amppnp
Length = 456
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 94 PCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNY 153
P DE+ ++V EY IAA D + ++ + N W + GD L P+N
Sbjct: 354 PLDESLKIVKEYLIAATAKDCS-----------IMISFQSRNAWDSEPSGDYVSLKPTNQ 402
Query: 154 VVPYEAQ 160
Y+
Sbjct: 403 TFDYKVH 409
>pdb|4AXC|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase Apo Form
Length = 456
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 94 PCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNY 153
P DE+ ++V EY IAA D + ++ + N W + GD L P+N
Sbjct: 354 PLDESLKIVKEYLIAATAKDCS-----------IMISFQSRNAWDSEPSGDYVSLKPTNQ 402
Query: 154 VVPYEAQ 160
Y+
Sbjct: 403 TFDYKVH 409
>pdb|2XAL|A Chain A, Lead Derivative Of Inositol 1,3,4,5,6-Pentakisphosphate 2-
Kinase From A. Thaliana In Complex With Adp And Ip6.
pdb|2XAL|B Chain B, Lead Derivative Of Inositol 1,3,4,5,6-Pentakisphosphate 2-
Kinase From A. Thaliana In Complex With Adp And Ip6.
pdb|2XAM|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip6.
pdb|2XAM|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip6.
pdb|2XAN|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Amp Pnp And Ip5
pdb|2XAN|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Amp Pnp And Ip5
pdb|2XAO|A Chain A, Inositol 1,3,4,5,6-pentakisphosphate 2-kinase From A.
Thaliana In Complex With Ip5
pdb|2XAO|B Chain B, Inositol 1,3,4,5,6-pentakisphosphate 2-kinase From A.
Thaliana In Complex With Ip5
pdb|2XAR|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Ip6.
pdb|2XAR|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Ip6
Length = 451
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 94 PCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNY 153
P DE+ ++V EY IAA D + ++ + N W + GD L P+N
Sbjct: 349 PLDESLKIVKEYLIAATAKDCS-----------IMISFQSRNAWDSEPSGDYVSLKPTNQ 397
Query: 154 VVPYEAQ 160
Y+
Sbjct: 398 TFDYKVH 404
>pdb|4AQK|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase In Complex
With Adp And Ip6
pdb|4AXF|A Chain A, Insp5 2-K In Complex With Ins(3,4,5,6)p4 Plus Amppnp
Length = 456
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 94 PCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNY 153
P DE+ ++V EY IAA D + ++ + N W + GD L P+N
Sbjct: 354 PLDESLKIVKEYLIAATAKDCS-----------IMISFQSRNAWDSEPSGDYVSLKPTNQ 402
Query: 154 VVPYEAQ 160
Y+
Sbjct: 403 TFDYKVH 409
>pdb|4AXE|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase In Complex
With Adp
Length = 456
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 94 PCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNY 153
P DE+ ++V EY IAA D + ++ + N W + GD L P+N
Sbjct: 354 PLDESLKIVKEYLIAATAKDCS-----------IMISFQSRNAWDSEPSGDYVSLKPTNQ 402
Query: 154 VVPYEAQ 160
Y+
Sbjct: 403 TFDYKVH 409
>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer
pdb|2BZY|A Chain A, Dimeric Of Crkl-Sh3c Domain
pdb|2BZY|B Chain B, Dimeric Of Crkl-Sh3c Domain
Length = 67
Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 229 ATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
A L+L G ++ + + G WEGE+ G+K G FP ++VK+
Sbjct: 14 AYDKTALALEVGDIVKVTRMNINGQWEGEVN--GRK---GLFPFTHVKI 57
Score = 27.3 bits (59), Expect = 9.9, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 112 YDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRTGLFPSNYVVPYEAQ 160
YD T L +++ VT+ N W G + R GLFP +V ++ Q
Sbjct: 15 YDKTA---LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ 61
>pdb|1AOJ|A Chain A, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined
Dimer
pdb|1AOJ|B Chain B, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined
Dimer
pdb|1I07|A Chain A, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I07|B Chain B, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I0C|A Chain A, Eps8 Sh3 Closed Monomer
pdb|1I0C|B Chain B, Eps8 Sh3 Closed Monomer
Length = 60
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 45 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
Y+FV+RN ELS D++ + + W G +G+ P + ++
Sbjct: 8 YDFVARNSSELSVMKDDVL--EILDDRRQWWKVRNASGDSGFVPNNILD 54
>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From
Human Cdna
Length = 71
Score = 28.9 bits (63), Expect = 3.6, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEP-GWLAGELRGQTGWFPESYVE 93
RA+Y+ DEL+F GDI+ + + E GW L G+ G P + ++
Sbjct: 11 RALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQ 63
>pdb|2GTJ|A Chain A, Reduced Form Of Adap Hsh3-N-Domain
pdb|2GTO|A Chain A, Oxidized Form Of Adap Hsh3-N
Length = 96
Score = 28.9 bits (63), Expect = 3.9, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 53 DELSFQPGDII-MVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
+ELSF+ G+ I ++ + N E WL RG G+ + VE
Sbjct: 42 NELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVE 83
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 119 DLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
++T + +++ + N DWW + DR G P+ YV
Sbjct: 15 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 51
>pdb|2K2M|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3
Binding
Length = 68
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 32 PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
P G + Y+F +RN ELS + D++ V ++ W + GQ G+ P +
Sbjct: 2 PLGSGALKWVLCNYDFQARNSSELSVKQRDVL--EVLDDSRKWWKVRDPAGQEGYVPYNI 59
Query: 92 VEP 94
+ P
Sbjct: 60 LTP 62
>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src
Kinase Complexed With A Peptide From The Tyrosine
Phosphatase Pep
Length = 83
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTK--KENDWWTGT--IGDRTGLFPSNYV 154
IA Y + T DL F + +V+ + K+ +W+ +G R G+ P+NYV
Sbjct: 15 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVG-REGIIPANYV 65
>pdb|1T0H|A Chain A, Crystal Structure Of The Rattus Norvegicus Voltage Gated
Calcium Channel Beta Subunit Isoform 2a
Length = 132
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 106 YIAAYPYDSTEPGD-LTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPS 151
Y AA D PG ++F + ++V +K NDWW G + G G PS
Sbjct: 57 YSAAQEDDVPVPGXAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS 107
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTK--KENDWWTGT--IGDRTGLFPSNYV 154
IA Y + T DL F + +V+ + K+ +W+ +G R G+ P+NYV
Sbjct: 15 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVG-REGIIPANYV 65
>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|B Chain B, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|C Chain C, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|D Chain D, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
Length = 71
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTK--KENDWWTGT--IGDRTGLFPSNYV 154
IA Y + T DL F + +V+ + K+ +W+ +G R G+ P+NYV
Sbjct: 15 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVG-REGIIPANYV 65
>pdb|1T0J|A Chain A, Crystal Structure Of A Complex Between Voltage-Gated
Calcium Channel Beta2a Subunit And A Peptide Of The
Alpha1c Subunit
Length = 132
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 106 YIAAYPYDSTEPG-DLTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPS 151
Y AA D PG ++F + ++V +K NDWW G + G G PS
Sbjct: 57 YSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS 107
>pdb|3A98|A Chain A, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
pdb|3A98|C Chain C, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
Length = 184
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESYVEPCDETG 99
AIY F +LS Q GD++ + Q W G L + G FP+S++ + T
Sbjct: 22 AIYNFQGSGAPQLSLQIGDVVRI---QETCGDWYRGYLIKHKXLQGIFPKSFIHIKEVTV 78
Query: 100 E 100
E
Sbjct: 79 E 79
>pdb|2ROL|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3
Binding
Length = 64
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 45 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
Y+F +RN ELS + D++ V ++ W + GQ G+ P + + P
Sbjct: 14 YDFQARNSSELSVKQRDVL--EVLDDSRKWWKVRDPAGQEGYVPYNILTP 61
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human Epidermal
Growth Factor Receptor Pathway Substrate 8-Like Protein
Length = 68
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGE 100
+ +Y+F +RN +ELS +++ V ++ W GQ G+ PC+ GE
Sbjct: 11 KILYDFTARNANELSVLKDEVL--EVLEDGRQWWKLRSRSGQAGYV------PCNILGE 61
>pdb|4DLO|A Chain A, Crystal Structure Of The Gain And Hormr Domains Of Brain
Angiogenesis Inhibitor 3 (Bai3)
pdb|4DLO|B Chain B, Crystal Structure Of The Gain And Hormr Domains Of Brain
Angiogenesis Inhibitor 3 (Bai3)
Length = 382
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 95 CDETGEVVPEYYIAAYPYDSTEPGDLTFNQ 124
C E+ PE Y+ + + T GDL FNQ
Sbjct: 13 CPAPYEICPEDYLMSMVWKRTPAGDLAFNQ 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.132 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,426,370
Number of Sequences: 62578
Number of extensions: 345761
Number of successful extensions: 1379
Number of sequences better than 100.0: 301
Number of HSP's better than 100.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 139
Number of HSP's that attempted gapping in prelim test: 704
Number of HSP's gapped (non-prelim): 606
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)