RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7076
(290 letters)
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 125 bits (315), Expect = 2e-35
Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
+ YRAI ++ +G E++ GD++ V K E GW +++ + GW P S++EP
Sbjct: 9 IILQTYRAIADYEKTSGSEMALSTGDVVEVVEKS--ESGWWFCQMKAKRGWIPASFLEPL 66
Query: 96 DETGEVVP-------EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTG 147
D E E Y+A Y + E +++ + E + V K + WW D TG
Sbjct: 67 DSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTG 126
Query: 148 LFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSS 190
FPS Y+ A P + + + + + S
Sbjct: 127 YFPSMYLQKSGQDVSQAQRQIKRGAPPRRSSIRNAHSIHQRSR 169
Score = 90.0 bits (223), Expect = 5e-22
Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 52/190 (27%)
Query: 101 VVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA 159
++ + Y A Y+ T ++ + +V+ V +K E+ WW + + G P++++ P ++
Sbjct: 9 IILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDS 68
Query: 160 QTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPE 219
+P E
Sbjct: 69 PDETEDPEPNY----------------------------------------------AGE 82
Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG 279
+ YTA +++SL G+ + + K GWW G+FP+ Y++ G
Sbjct: 83 PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDV-----TGYFPSMYLQKSG 137
Query: 280 GGGISIQKYL 289
Q+ +
Sbjct: 138 QDVSQAQRQI 147
Score = 70.8 bits (173), Expect = 6e-15
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 210 AGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGW 269
G+P+ + +A Y TS +++LS G ++ + +K+ +GWW +++AK GW
Sbjct: 3 LGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAK-----RGW 57
Query: 270 FPASYVKVM 278
PAS+++ +
Sbjct: 58 IPASFLEPL 66
Score = 65.8 bits (160), Expect = 4e-13
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
+ DP Y AI + + GDE+S G+ + V GW TG+
Sbjct: 70 DETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVE--VIHKLLDGWWVIRKDDVTGY 127
Query: 87 FPESYVEPCDET 98
FP Y++ +
Sbjct: 128 FPSMYLQKSGQD 139
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 125 bits (314), Expect = 4e-34
Identities = 45/252 (17%), Positives = 81/252 (32%), Gaps = 41/252 (16%)
Query: 45 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP-------------ESY 91
Y R DE + +I + E G A ++ FP +
Sbjct: 78 YSLTVREADEGNAVCHYLI--ERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTE 135
Query: 92 VEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLF 149
+ + E + + + DL F Q E + + K DWW TGL
Sbjct: 136 ASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLV 195
Query: 150 PSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQ 209
P+NYV SS+ S+ T++
Sbjct: 196 PANYVQIQMEFHNDRTSKGAS-----------------QSSIGSSGGGAERFSSASTSSD 238
Query: 210 AGTPKGKKPEIATVLAPYTATSSE--QLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQV 267
+ + P A V + + QL + +GQ +++ +K + G ++ EL + +
Sbjct: 239 NIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQ-----I 293
Query: 268 GWFPASYVKVMG 279
G P +Y++
Sbjct: 294 GSVPHTYLRFTA 305
Score = 98.4 bits (244), Expect = 4e-24
Identities = 21/162 (12%), Positives = 46/162 (28%), Gaps = 40/162 (24%)
Query: 32 PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
++F +L F+ G+ + + + + + W A G TG P +Y
Sbjct: 141 AYKKPIIEVVVGTFKFTGERETDLPFEQGERLEI-LSKTNQDWWEARNALGTTGLVPANY 199
Query: 92 VEPCDETGEVVPEY--------------------------------------YIAAYPYD 113
V+ E +
Sbjct: 200 VQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPN 259
Query: 114 STEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
+ +P L + + + VT+K ++ + + + G P Y+
Sbjct: 260 AYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYL 301
Score = 59.8 bits (144), Expect = 1e-10
Identities = 27/177 (15%), Positives = 44/177 (24%), Gaps = 55/177 (31%)
Query: 113 DSTEPGD--LTFNQDEVIYVTK---------KENDWWTGTIGDRTGLFPSNYVVPYEAQT 161
DS+ PG+ LT + + KE+ + FP + +
Sbjct: 71 DSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKM 130
Query: 162 PAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIA 221
A+ K E+
Sbjct: 131 ----------------------------------------RVLTEASLLAAYKKPIIEVV 150
Query: 222 TVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
+T L +G+ + I KT WWE G PA+YV++
Sbjct: 151 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARN----ALGTTGLVPANYVQIQ 203
Score = 55.2 bits (132), Expect = 5e-09
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 11 SWGDNAWDNAPAADTWTASTDPT-GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQ 69
+ +A T + + + + + + + +L + G ++V K
Sbjct: 221 GSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKM 280
Query: 70 NAEPGWLAGELRGQTGWFPESYVEPCDET 98
+ G EL GQ G P +Y+ +
Sbjct: 281 S--NGMYKAELDGQIGSVPHTYLRFTAVS 307
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 100 bits (248), Expect = 1e-24
Identities = 45/250 (18%), Positives = 77/250 (30%), Gaps = 17/250 (6%)
Query: 34 GVSEYRRYRA---IYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPES 90
VS Y ++ + D L ++ + L S
Sbjct: 57 RVSHYIINSLPNRRFKIGDQEFDHL----PALLEFYKIHYLDTTTLIEPAPRYPSPPMGS 112
Query: 91 YVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGL 148
P T E EY Y + + DL F + E++ + +K E WW+ D R G+
Sbjct: 113 VSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGM 172
Query: 149 FPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAA 208
P YV E ++ + + + + +
Sbjct: 173 IPVPYV---EKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITP 229
Query: 209 QAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVG 268
T G A A L+L G ++ + + G WEGE+ + G
Sbjct: 230 LPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGR-----KG 284
Query: 269 WFPASYVKVM 278
FP ++VK+
Sbjct: 285 LFPFTHVKIF 294
Score = 86.6 bits (213), Expect = 8e-20
Identities = 34/188 (18%), Positives = 60/188 (31%), Gaps = 52/188 (27%)
Query: 26 WTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG 85
+A PT R +Y+F + ++L F+ G+I+++ +++ E W A G+ G
Sbjct: 113 VSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVI-IEKPEEQWWSARNKDGRVG 171
Query: 86 WFPESYVEPCDETGEVVPEYY--------------------------------------- 106
P YVE +
Sbjct: 172 MIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLP 231
Query: 107 -----------IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
I + + L +++ VT+ N W G + R GLFP +V
Sbjct: 232 STQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHV 291
Query: 155 VPYEAQTP 162
++ Q P
Sbjct: 292 KIFDPQNP 299
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 99.7 bits (247), Expect = 1e-24
Identities = 36/194 (18%), Positives = 62/194 (31%), Gaps = 19/194 (9%)
Query: 87 FPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD- 144
S + EY A + ++ + DL F + +++ + K E WW +
Sbjct: 118 VSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEG 177
Query: 145 RTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSS 204
+ G+ P YV Y + + + P G S
Sbjct: 178 KRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGG------------PEPGPYAQPS 225
Query: 205 FTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKK 264
G A L+L G+L+ + K +G WEGE K
Sbjct: 226 VNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGK--- 282
Query: 265 RQVGWFPASYVKVM 278
G FP ++V+++
Sbjct: 283 --RGHFPFTHVRLL 294
Score = 92.0 bits (227), Expect = 9e-22
Identities = 32/173 (18%), Positives = 54/173 (31%), Gaps = 43/173 (24%)
Query: 32 PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
E RA+++F + ++L F+ GDI+ + K + W A + G+ G P Y
Sbjct: 128 ILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPY 186
Query: 92 VEP-----------------------------------------CDETGEVVPEYYIAAY 110
VE + + I
Sbjct: 187 VEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKR 246
Query: 111 PYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYEAQTP 162
++ + L E++ VTK W G + G FP +V + Q P
Sbjct: 247 VPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNP 299
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 90.2 bits (224), Expect = 3e-23
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 81 RGQTGWFPESYVEPCDETGEVVP------EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK- 133
GQ GWFP S+V+ + E IA Y Y + +L+F++ ++I V K
Sbjct: 6 SGQKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKD 65
Query: 134 ENDWWTGTIGDRTGLFPSNYVVPYEAQTPAAA 165
+ DWW G I TGLFPSNYV + ++
Sbjct: 66 DPDWWQGEINGVTGLFPSNYVKMTTDSSGPSS 97
Score = 71.3 bits (175), Expect = 4e-16
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
++ + A+Y++ + N DELSF G +I V + ++ +P W GE+ G TG
Sbjct: 23 SSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINV-MNKD-DPDWWQGEINGVTGL 80
Query: 87 FPESYVEPCDETGE 100
FP +YV+ ++
Sbjct: 81 FPSNYVKMTTDSSG 94
Score = 56.7 bits (137), Expect = 9e-11
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 207 AAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQ 266
+++ TP + Y A + ++LS S+GQLI + K WW+GE+
Sbjct: 23 SSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEI-----NGV 77
Query: 267 VGWFPASYVKVM 278
G FP++YVK+
Sbjct: 78 TGLFPSNYVKMT 89
Score = 33.2 bits (76), Expect = 0.017
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 260 AKGKKRQVGWFPASYVKVMGGGG 282
+ G Q GWFPAS+VK++G
Sbjct: 2 SSGSSGQKGWFPASHVKLLGPSS 24
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 89.3 bits (222), Expect = 4e-23
Identities = 36/62 (58%), Positives = 46/62 (74%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQTP 162
E YIA YPY S EPGDLTF + E I VT+K+ +WWTG+IGDR+G+FPSNYV P ++
Sbjct: 8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIFPSNYVKPKDSGPS 67
Query: 163 AA 164
+
Sbjct: 68 SG 69
Score = 69.6 bits (171), Expect = 7e-16
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+G S Y A+Y + S +L+F G+ I+V + W G + ++G FP +YV
Sbjct: 3 SGSSGGEEYIALYPYSSVEPGDLTFTEGEEILV---TQKDGEWWTGSIGDRSGIFPSNYV 59
Query: 93 EPCD 96
+P D
Sbjct: 60 KPKD 63
Score = 53.8 bits (130), Expect = 4e-10
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
G+ E L PY++ L+ + G+ I++ +K WW G + + G F
Sbjct: 1 GSSGSSGGEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSI-----GDRSGIF 54
Query: 271 PASYVKVM 278
P++YVK
Sbjct: 55 PSNYVKPK 62
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 89.1 bits (221), Expect = 7e-23
Identities = 33/65 (50%), Positives = 39/65 (60%)
Query: 34 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
G S YRA+Y F +RN DE+SF GDII V K EPGWL G +G GWFP +YVE
Sbjct: 1 GSSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60
Query: 94 PCDET 98
+
Sbjct: 61 KMPSS 65
Score = 75.6 bits (186), Expect = 1e-17
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 99 GEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVV 155
G Y A YP+++ +++FN ++I V +K E W G+ G FP NYV
Sbjct: 1 GSSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60
Query: 156 PYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSS 190
+ AV P A PT S T S
Sbjct: 61 KMPSSENEKAVSPKKALL----PPTVSLSATSGPS 91
Score = 52.1 bits (125), Expect = 3e-09
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 216 KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQVGWFPAS 273
L P+ A + +++S + G +I + +KT GW G Q GWFP +
Sbjct: 3 SGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGN-----FGWFPCN 57
Query: 274 YVKVM 278
YV+ M
Sbjct: 58 YVEKM 62
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 89.7 bits (222), Expect = 2e-22
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 35/137 (25%)
Query: 34 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
G + +A Y+F +R+ ELS + GDII + + + + GW GE+ G+ GWFP +YVE
Sbjct: 1 GPGTFGTAKARYDFCARDRSELSLKEGDIIKI-LNKKGQQGWWRGEIYGRIGWFPSNYVE 59
Query: 94 PCDET---------------------------------GEVVPEYYIAAYPYDSTEPGDL 120
E Y D+ G+
Sbjct: 60 EDYSEYLPETGGGSGSSMTYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEW 119
Query: 121 TFNQ-DEVIYVTKKEND 136
T++ + VT+ +
Sbjct: 120 TYDDATKTFTVTEHSLE 136
Score = 74.0 bits (181), Expect = 1e-16
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
Query: 99 GEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVP 156
G A Y + + + +L+ + ++I + K+ WW G I R G FPSNYV
Sbjct: 1 GPGTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEE 60
Query: 157 YEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRS 197
++ + ++ K T++ + + +
Sbjct: 61 DYSEYLPETGGGSGSSMTYKLILNGKTLKGETTTEAVDAAT 101
Score = 52.0 bits (124), Expect = 1e-08
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
A + A +LSL G +I I KK GWW GE+ ++GWFP++YV+
Sbjct: 8 AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIY-----GRIGWFPSNYVEED 61
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 85
Score = 87.9 bits (218), Expect = 2e-22
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+G S A+ +++ N LSF GD+I + EPGW G G++G FP V
Sbjct: 3 SGSSGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIV 62
Query: 93 EPCDE 97
+P
Sbjct: 63 QPAAA 67
Score = 72.9 bits (179), Expect = 9e-17
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 98 TGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
+G Y IA Y + L+F++ ++I + E W G+ G R+GLFP++ V
Sbjct: 3 SGSSGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIV 62
Query: 155 VPYEAQTPAAAVDPTPATP 173
P A + + + +
Sbjct: 63 QPAAAPDFSFSKEQRSGSG 81
Score = 53.6 bits (129), Expect = 9e-10
Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQVG 268
G+ L Y + LS RG LI + T GW G + G
Sbjct: 1 GSSGSSGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGR-----SG 55
Query: 269 WFPASYVKVM 278
FPA V+
Sbjct: 56 LFPADIVQPA 65
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 89.4 bits (221), Expect = 1e-21
Identities = 34/216 (15%), Positives = 66/216 (30%), Gaps = 48/216 (22%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYEAQTPA 163
IA Y + +T +L+F + +++ V +E D W+ + + G P NY+
Sbjct: 3 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFF 62
Query: 164 AAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRS-------------------------- 197
+ A ++ + R S + G S
Sbjct: 63 GKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV 122
Query: 198 ----GTPDFSSFTAAQAGTPKGK-----------KPEIATVLAPYTATSSEQLSLSRGQL 242
+ + + + + + +P L + +L RG
Sbjct: 123 VKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDF 182
Query: 243 IMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
I + + WW+G Q G FP +YV +
Sbjct: 183 IHVMDNSDPNWWKGAC-----HGQTGMFPRNYVTPV 213
Score = 59.7 bits (144), Expect = 7e-11
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 92 VEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFP 150
E P Y A + +D E G+L F + + I+V + +WW G +TG+FP
Sbjct: 147 FLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFP 206
Query: 151 SNYVVPYE 158
NYV P
Sbjct: 207 RNYVTPVN 214
Score = 58.2 bits (140), Expect = 3e-10
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
+ +A+++F + EL F+ GD I V +P W G GQTG
Sbjct: 147 FLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNS--DPNWWKGACHGQTGM 204
Query: 87 FPESYVEPCDE 97
FP +YV P +
Sbjct: 205 FPRNYVTPVNR 215
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 72
Score = 84.6 bits (210), Expect = 2e-21
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 29 STDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP 88
S+ +G + +R+ +A+Y + + ELSF G + V + EPGWL G L G+TG P
Sbjct: 2 SSGSSG-TPFRKAKALYACKAEHDSELSFTAGTVFDN-VHPSQEPGWLEGTLNGKTGLIP 59
Query: 89 ESYVEP 94
E+YVE
Sbjct: 60 ENYVEF 65
Score = 63.8 bits (156), Expect = 1e-13
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYEAQT 161
A Y + +L+F V + W GT+ +TGL P NYV +
Sbjct: 11 RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGPS 70
Query: 162 PA 163
Sbjct: 71 SG 72
Score = 53.4 bits (129), Expect = 7e-10
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 213 PKGKKPEIATVLAPYTATSSEQLSLSRGQLIM-IRKKTTTGWWEGELQAKGKKRQVGWFP 271
G A L A +LS + G + + GW EG L K G P
Sbjct: 5 SSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGK-----TGLIP 59
Query: 272 ASYVKVMGG 280
+YV+ + G
Sbjct: 60 ENYVEFLSG 68
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 84.8 bits (210), Expect = 2e-21
Identities = 43/67 (64%), Positives = 53/67 (79%)
Query: 214 KGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPAS 273
G EIA V + Y A+ SEQLSL+ GQLI+I KK T+GWW+GELQA+GKKRQ GWFPAS
Sbjct: 3 SGSSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPAS 62
Query: 274 YVKVMGG 280
+VK++G
Sbjct: 63 HVKLLGP 69
Score = 63.6 bits (155), Expect = 2e-13
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDR-----TGLFPSNYVVP 156
E Y ++ L+ ++I + KK WW G + R G FP+++V
Sbjct: 7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66
Query: 157 YEAQTPAAA 165
+ A+
Sbjct: 67 LGPSSERAS 75
Score = 62.8 bits (153), Expect = 3e-13
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG-----QTGWFPES 90
S + +V+ ++LS PG +I++ K GW GEL+ Q GWFP S
Sbjct: 5 SSGEIAQVTSAYVASGSEQLSLAPGQLILILKKN--TSGWWQGELQARGKKRQKGWFPAS 62
Query: 91 YVEPCDETGE 100
+V+ + E
Sbjct: 63 HVKLLGPSSE 72
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 84.2 bits (209), Expect = 2e-21
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG 99
Y Y++ + + DEL+ + G+II VK+ E GWL GEL G+ G FP+++V+
Sbjct: 3 DYIVEYDYDAVHDDELTIRVGEIIRN-VKKLQEEGWLEGELNGRRGMFPDNFVKEIKRET 61
Query: 100 E 100
E
Sbjct: 62 E 62
Score = 71.1 bits (175), Expect = 2e-16
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYEAQT 161
YI Y YD+ +LT E+I KK + W G + R G+FP N+V + +T
Sbjct: 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRET 61
Score = 52.6 bits (127), Expect = 1e-09
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIM-IRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
V Y A ++L++ G++I ++K GW EGEL G+ G FP ++VK +
Sbjct: 4 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGEL--NGR---RGMFPDNFVKEI 57
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 81
Score = 84.7 bits (210), Expect = 3e-21
Identities = 20/72 (27%), Positives = 32/72 (44%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
+ D S R+ R +Y++ + N ELS ++I V + WL GE Q G
Sbjct: 6 SGLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGK 65
Query: 87 FPESYVEPCDET 98
P +Y+E +
Sbjct: 66 VPITYLELLNSG 77
Score = 67.0 bits (164), Expect = 1e-14
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYEA 159
Y YD+ +L+ DEVI V ++DW G G++ G P Y+ +
Sbjct: 17 NRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNS 76
Query: 160 QTPAA 164
+
Sbjct: 77 GPSSG 81
Score = 54.3 bits (131), Expect = 4e-10
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQA 260
SS ++ + A VL Y A +S +LSL ++I + W GE
Sbjct: 2 SSGSSGLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGER-- 59
Query: 261 KGKKRQVGWFPASYVKVMGGG 281
Q G P +Y++++ G
Sbjct: 60 ---GNQKGKVPITYLELLNSG 77
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 83.1 bits (206), Expect = 7e-21
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
S A Y F +R+ ELS + GD++ + + + GW GE G+ GWFP +YVE
Sbjct: 5 SSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEE 64
Query: 96 DETGE 100
Sbjct: 65 GIQSG 69
Score = 72.4 bits (178), Expect = 8e-17
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYEAQ 160
+A Y + + + +L+ + +V+ + + + WW G R G FPS YV Q
Sbjct: 8 GTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGIQ 67
Query: 161 TPAAA 165
+ ++
Sbjct: 68 SGPSS 72
Score = 56.6 bits (137), Expect = 5e-11
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQVGWFPA 272
G A + A +LSL G ++ I + GWW+GE + +GWFP+
Sbjct: 4 GSSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGR-----IGWFPS 58
Query: 273 SYVKVMG 279
+YV+ G
Sbjct: 59 TYVEEEG 65
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 82.8 bits (205), Expect = 1e-20
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 29 STDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP 88
S D S+ + I+ + ++N DEL+ + GDI+ + K + GW GEL G+ G FP
Sbjct: 1 SMDSRTKSK-DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFP 59
Query: 89 ESYVEPCDETGE 100
+++V+ E
Sbjct: 60 DNFVKLLPPDFE 71
Score = 71.2 bits (175), Expect = 2e-16
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
+Y +PY++ +LT + +++ + K + WW G + R G+FP N+V
Sbjct: 9 KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 63
Score = 61.2 bits (149), Expect = 1e-12
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 210 AGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQV 267
+ + K + V+ PY A + ++L++ G ++ + K GWWEGEL +
Sbjct: 1 SMDSRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGR-----R 55
Query: 268 GWFPASYVKVM 278
G FP ++VK++
Sbjct: 56 GVFPDNFVKLL 66
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling
protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 81.5 bits (202), Expect = 3e-20
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 98
+ I+ + ++N DEL+ + GDI+ + K + GW GEL G+ G FP+++V+
Sbjct: 3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPL 62
Score = 75.8 bits (187), Expect = 4e-18
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
+Y +PY++ +LT + +++ + K + WW G + R G+FP N+V
Sbjct: 2 SDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 56
Score = 57.7 bits (140), Expect = 2e-11
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQVGWFPASYV 275
+ V+ PY A + ++L++ G ++ + K GWWEGEL + G FP ++V
Sbjct: 2 SDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGR-----RGVFPDNFV 56
Query: 276 KVM 278
K++
Sbjct: 57 KLL 59
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 80.7 bits (200), Expect = 4e-20
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
R ++ + N DEL+F+ G+II + K+ E GW GEL G+ G FP+++
Sbjct: 7 EYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQ 62
Score = 76.1 bits (188), Expect = 2e-18
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVP 156
EY +PY T +LTF + E+I++ K E WW G + + G+FP N+ V
Sbjct: 6 KEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQ 62
Score = 57.6 bits (140), Expect = 2e-11
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 214 KGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQVGWFP 271
E L PYT T+ ++L+ G++I + K T GWW+GEL K G FP
Sbjct: 2 AMGAKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGK-----EGVFP 56
Query: 272 ASYVKVM 278
++ +
Sbjct: 57 DNFAVQI 63
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 80.7 bits (200), Expect = 5e-20
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPY 157
++ A + ++ E G+L F + +VI + K++ +WW G + +R G+FPSNYV PY
Sbjct: 2 TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY 57
Score = 74.9 bits (185), Expect = 6e-18
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
E + +A+++F + EL+F+ GD+I + + ++ +P W G+L + G FP +YV P +
Sbjct: 1 ETKFVQALFDFNPQESGELAFKRGDVITL-INKD-DPNWWEGQLNNRRGIFPSNYVCPYN 58
Score = 58.3 bits (142), Expect = 7e-12
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
+ + L + S +L+ RG +I + K WWEG+L + G FP++YV
Sbjct: 1 ETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL-----NNRRGIFPSNYVC 55
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 87.7 bits (216), Expect = 5e-20
Identities = 33/218 (15%), Positives = 63/218 (28%), Gaps = 22/218 (10%)
Query: 64 MVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFN 123
++E A +S + + A + + +L F
Sbjct: 135 FYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFK 194
Query: 124 QDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKS 182
+VI++ + N DW GT+ TG+FP ++V ++KD P +
Sbjct: 195 AGDVIFLLSRINKDWLEGTVRGATGIFPLSFV------------------KILKDFPEED 236
Query: 183 EGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQL 242
+ T + + TP K T + + G L
Sbjct: 237 DPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDL 296
Query: 243 IMIRKKTTTGWWEGELQAKGKKRQVGWFP-ASYVKVMG 279
+ + + A+G Q FP ++
Sbjct: 297 VRLLSDEDVALMVRQ--ARGLPSQKRLFPWKLHITQKD 332
Score = 73.1 bits (178), Expect = 5e-15
Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 41/169 (24%)
Query: 26 WTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG 85
+ + R A+++F + EL+F+ GD+I + + N WL G +RG TG
Sbjct: 162 VSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRIN--KDWLEGTVRGATG 219
Query: 86 WFPESYVEPCDETGEV------------VPEYYIAAYPYDSTEPGDLTFNQDEVIYV--- 130
FP S+V+ + E + +D +
Sbjct: 220 IFPLSFVKILKDFPEEDDPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRRE 279
Query: 131 ---------------------TKKENDWWTGT---IGDRTGLFPSNYVV 155
+ ++ + + LFP +
Sbjct: 280 FQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHI 328
Score = 60.8 bits (146), Expect = 8e-11
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 5/106 (4%)
Query: 173 PVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSS 232
V+ +S + + + Q + A L +T S
Sbjct: 129 EDVRIFFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGNSK 188
Query: 233 EQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
+L+ G +I + + W EG + + G FP S+VK++
Sbjct: 189 LELNFKAGDVIFLLSRINKDWLEGTV-----RGATGIFPLSFVKIL 229
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 79.5 bits (197), Expect = 1e-19
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
EY A Y +D + GDL + + + +K + +W+ G+ RTG+FP+NYV P
Sbjct: 2 MEYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKP 56
Score = 71.4 bits (176), Expect = 1e-16
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
A+Y+F + +L +PGD + + +++ P W G G+TG FP +YV+P
Sbjct: 3 EYVEALYQFDPQQDGDLGLKPGDKVQL-LEKL-SPEWYKGSCNGRTGIFPANYVKPA 57
Score = 55.2 bits (134), Expect = 1e-10
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
E L + L L G + + +K + W++G + G FPA+YVK
Sbjct: 2 MEYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGR-----TGIFPANYVK 55
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 80.0 bits (198), Expect = 1e-19
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+G S + YRA+Y++ ++N DEL GDI+ V + + E GW E GQ G+ P SY+
Sbjct: 3 SGSSGAQEYRALYDYTAQNPDELDLSAGDILEV-ILEG-EDGWWTVERNGQRGFVPGSYL 60
Query: 93 EPCDE 97
E
Sbjct: 61 EKLSG 65
Score = 69.2 bits (170), Expect = 1e-15
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 98 TGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP 156
+G + Y A Y Y + P +L + +++ V + E+ WWT + G P +Y+
Sbjct: 3 SGSSGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEK 62
Query: 157 YEAQTPA 163
+
Sbjct: 63 LSGPSSG 69
Score = 61.5 bits (150), Expect = 9e-13
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
G+ + L YTA + ++L LS G ++ + + GWW E + G+
Sbjct: 1 GSSGSSGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQ-----RGFV 55
Query: 271 PASYVKVMGG 280
P SY++ + G
Sbjct: 56 PGSYLEKLSG 65
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 79.1 bits (196), Expect = 2e-19
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
P Y A + +D E G+L F + + I+V + +WW G +TG+FP NYV
Sbjct: 2 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTA 56
Score = 70.3 bits (173), Expect = 3e-16
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
+A+++F + EL F+ GD I V + + +P W G GQTG FP +YV +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHV-MDNS-DPNWWKGACHGQTGMFPRNYVTAVN 58
Score = 57.6 bits (140), Expect = 2e-11
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
P L + +L RG I + + WW+G Q G FP +YV
Sbjct: 2 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC-----HGQTGMFPRNYVTA 56
Query: 278 M 278
+
Sbjct: 57 V 57
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 79.4 bits (196), Expect = 3e-19
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWF 87
T+ G RR + + ++ +N DEL + GDII V V + E GW G L G+TG F
Sbjct: 8 MGTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEV-VGEV-EEGWWEGVLNGKTGMF 65
Query: 88 PESYVEPCDETGEVVPE 104
P ++++ + +
Sbjct: 66 PSNFIKELSGESDELGI 82
Score = 72.1 bits (177), Expect = 2e-16
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 94 PCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSN 152
++ GE A+ Y +L ++I V + + WW G + +TG+FPSN
Sbjct: 9 GTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSN 68
Query: 153 YVVPYEAQTPAAAV 166
++ ++ +
Sbjct: 69 FIKELSGESDELGI 82
Score = 59.4 bits (144), Expect = 8e-12
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 190 SVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKT 249
S++GG + GT ++ V Y + ++L L G +I + +
Sbjct: 1 SMTGGQQMGTN-----------KRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEV 49
Query: 250 TTGWWEGELQAKGKKRQVGWFPASYVKVM 278
GWWEG L + G FP++++K +
Sbjct: 50 EEGWWEGVL-----NGKTGMFPSNFIKEL 73
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 78.5 bits (194), Expect = 4e-19
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWF 87
S+ +G S +A + F N DELS GDII V + E GW G L G+TGWF
Sbjct: 1 GSSGSSG-SHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVE--EGGWWEGTLNGRTGWF 57
Query: 88 PESYVEPCDETGEVVP 103
P +YV + P
Sbjct: 58 PSNYVREIKSSERSGP 73
Score = 69.6 bits (171), Expect = 8e-16
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQT 161
A + + T +L+ + ++IYVT+ E WW GT+ RTG FPSNYV ++
Sbjct: 10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSE 69
Query: 162 PAA 164
+
Sbjct: 70 RSG 72
Score = 60.8 bits (148), Expect = 2e-12
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 212 TPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFP 271
G I + T+ ++LS+ +G +I + + GWWEG L + GWFP
Sbjct: 4 GSSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGR-----TGWFP 58
Query: 272 ASYVKVM 278
++YV+ +
Sbjct: 59 SNYVREI 65
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 78.5 bits (194), Expect = 5e-19
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
+ I+ + ++N DEL+ + GDI+ + K + GW GEL G+ G FP+++V+
Sbjct: 8 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL 64
Score = 71.9 bits (177), Expect = 1e-16
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
+Y +PY++ +LT + +++ + K + WW G + R G+FP N+V
Sbjct: 7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 61
Score = 56.5 bits (137), Expect = 5e-11
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQVGWFPA 272
G + V+ PY A + ++L++ G ++ + K GWWEGEL + G FP
Sbjct: 4 GSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGR-----RGVFPD 58
Query: 273 SYVKVMGG 280
++VK++ G
Sbjct: 59 NFVKLLSG 66
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 78.6 bits (194), Expect = 5e-19
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV---VPYE 158
E +A Y Y P ++T + +++ + N DWW + DR G P+ YV P +
Sbjct: 2 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQ 61
Query: 159 AQTPAAAVDPTPATP 173
+ + P P P
Sbjct: 62 SASRENLGGPPPVPP 76
Score = 69.3 bits (170), Expect = 1e-15
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG 99
A+Y++ ++ E++ + GDI+ + + W E+ + G+ P +YV+ D
Sbjct: 4 LVLALYDYQEKSPREVTMKKGDILTL--LNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQ 61
Query: 100 EVVPE 104
E
Sbjct: 62 SASRE 66
Score = 57.8 bits (140), Expect = 2e-11
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
E+ L Y S ++++ +G ++ + T WW+ E+ + G+ PA+YVK
Sbjct: 2 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV-----NDRQGFVPAAYVKK 56
Query: 278 M 278
+
Sbjct: 57 L 57
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 78.0 bits (193), Expect = 7e-19
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
S +R ++ FV +EL PG+I+ V +K+ W GQ G P +Y+EP
Sbjct: 5 SSGEAHRVLFGFVPETKEELQVMPGNIVFV-LKKG-NDNWATVMFNGQKGLVPCNYLEP 61
Score = 68.4 bits (168), Expect = 2e-15
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVP 156
E + + + +L +++V KK ND W T + GL P NY+ P
Sbjct: 8 EAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEP 61
Score = 56.8 bits (138), Expect = 4e-11
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G E VL + + E+L + G ++ + KK W Q G P +Y
Sbjct: 4 GSSGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMF-----NGQKGLVPCNY 58
Query: 275 VKVMGG 280
++ + G
Sbjct: 59 LEPVSG 64
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 77.2 bits (191), Expect = 9e-19
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
+ R ++F +++ EL+ Q GDI+ + K+ + WL GE G+ G FP +YVE
Sbjct: 2 KAARLKFDFQAQSPKELTLQKGDIVYI-HKEV-DKNWLEGEHHGRLGIFPANYVEV 55
Score = 71.9 bits (177), Expect = 1e-16
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
+ + + + P +LT + +++Y+ K+ + +W G R G+FP+NYV
Sbjct: 2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 53
Score = 58.8 bits (143), Expect = 6e-12
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
A + + A S ++L+L +G ++ I K+ W EGE + +G FPA+YV+V+
Sbjct: 4 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGR-----LGIFPANYVEVL 56
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 77.2 bits (191), Expect = 9e-19
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
AIY + ++ DE+S PGDII V ++ + GW GE G G FP SY +
Sbjct: 2 AMEAIYAYEAQGDDEISIDPGDIITV-IRGDDGSGWTYGECDGLKGLFPTSYCK 54
Score = 66.0 bits (162), Expect = 1e-14
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 154
A Y Y++ +++ + ++I V + ++ W G GLFP++Y
Sbjct: 5 AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYC 53
Score = 50.2 bits (121), Expect = 5e-09
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 222 TVLAPYTATSSEQLSLSRGQLIM-IRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
+ Y A +++S+ G +I IR +GW GE G FP SY K
Sbjct: 4 EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGEC-----DGLKGLFPTSYCK 54
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 77.4 bits (191), Expect = 1e-18
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
S R +A+Y F +R DEL+ + GDI+++ K+ E GW G L G+ G FP +YVE
Sbjct: 5 SSGRLCKALYSFQARQDDELNLEKGDIVIIHEKK--EEGWWFGSLNGKKGHFPAAYVEEL 62
Query: 96 DETGEVVPE 104
Sbjct: 63 PSNAGNTAT 71
Score = 67.0 bits (164), Expect = 9e-15
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQTP 162
A Y + + + +L + +++ + +K E WW G++ + G FP+ YV +
Sbjct: 8 RLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAG 67
Query: 163 AAAVDPTP 170
A +
Sbjct: 68 NTATKASG 75
Score = 56.6 bits (137), Expect = 7e-11
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G + L + A ++L+L +G +++I +K GWW G L K G FPA+Y
Sbjct: 4 GSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGK-----KGHFPAAY 58
Query: 275 VKVM 278
V+ +
Sbjct: 59 VEEL 62
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 76.8 bits (190), Expect = 1e-18
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
+ ++ R A+++F + EL+F+ GD+I + + + WL G +RG TG FP S+V+
Sbjct: 1 LIKHMRAEALFDFTGNSKLELNFKAGDVIFL-LSRI-NKDWLEGTVRGATGIFPLSFVKI 58
Score = 74.9 bits (185), Expect = 7e-18
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
A + + +L F +VI++ + N DW GT+ TG+FP ++V
Sbjct: 8 EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 56
Score = 57.9 bits (141), Expect = 1e-11
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
A L +T S +L+ G +I + + W EG ++ G FP S+VK++
Sbjct: 7 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGA-----TGIFPLSFVKIL 59
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 76.5 bits (189), Expect = 2e-18
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
S+ R+ + ++E++ +N DEL + GDII + ++ E GW +G L + G FP ++V+
Sbjct: 5 SKKRQCKVLFEYIPQNEDELELKVGDIIDI-NEEV-EEGWWSGTLNNKLGLFPSNFVKEL 62
Query: 96 DET 98
+ T
Sbjct: 63 EVT 65
Score = 71.1 bits (175), Expect = 2e-16
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA 159
+ Y +L ++I + ++ E WW+GT+ ++ GLFPSN+V E
Sbjct: 8 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEV 64
Score = 57.3 bits (139), Expect = 3e-11
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 213 PKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
P G K VL Y + ++L L G +I I ++ GWW G L ++G FP+
Sbjct: 2 PLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL-----NNKLGLFPS 56
Query: 273 SYVKVM 278
++VK +
Sbjct: 57 NFVKEL 62
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 76.1 bits (188), Expect = 2e-18
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
+ + + A++ + + ++L FQ GDII+V + + WL GE +G+ G FP+ +VE
Sbjct: 2 LKKGSQVEALFSYEATQPEDLEFQEGDIILV-LSKV-NEEWLEGESKGKVGIFPKVFVED 59
Query: 95 CD 96
Sbjct: 60 SA 61
Score = 75.3 bits (186), Expect = 5e-18
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
A + Y++T+P DL F + ++I V K N +W G + G+FP +V
Sbjct: 5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVED 59
Score = 58.4 bits (142), Expect = 1e-11
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 216 KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
KK L Y AT E L G +I++ K W EGE + K VG FP +V
Sbjct: 3 KKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGK-----VGIFPKVFV 57
Query: 276 K 276
+
Sbjct: 58 E 58
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 77.2 bits (190), Expect = 3e-18
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 24 DTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVK--QNAEPGWLAG--E 79
+ S D + + + IY + +N DEL PGD I + + GW+ G
Sbjct: 3 SGSSGSRDIR-FANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSL 61
Query: 80 LRGQTGWFPESYVEPCDET 98
G +G PE+Y+ DE
Sbjct: 62 TTGCSGLLPENYITKADEC 80
Score = 55.2 bits (133), Expect = 3e-10
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-----WWTGTIGD--RTGLFPSNYVVP 156
E YPY +L + I+++ E W GT +GL P NY+
Sbjct: 17 ETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITK 76
Score = 50.2 bits (120), Expect = 2e-08
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 213 PKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT----GWWEGELQAKGKKRQVG 268
+ E V+ PYT + ++L L G I + T GW G G G
Sbjct: 11 IRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGC---SG 67
Query: 269 WFPASYVK 276
P +Y+
Sbjct: 68 LLPENYIT 75
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 76.1 bits (188), Expect = 3e-18
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 98
R+ + ++E++ +N DEL + GDII + ++ E GW +G L + G FP ++V+ +
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDIIDI-NEEV-EEGWWSGTLNNKLGLFPSNFVKELELE 59
Score = 73.0 bits (180), Expect = 4e-17
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYEAQTP 162
+ Y +L ++I + ++ + WW+GT+ ++ GLFPSN+V E +
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELEHH 61
Score = 54.9 bits (133), Expect = 2e-10
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
VL Y + ++L L G +I I ++ GWW G L ++G FP+++VK +
Sbjct: 4 CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL-----NNKLGLFPSNFVKEL 56
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 76.1 bits (188), Expect = 3e-18
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
S R RA ++F ++ EL Q GDI+ + KQ + W GE G+ G FP +Y+E
Sbjct: 5 SSGRPARAKFDFKAQTLKELPLQKGDIVYI-YKQI-DQNWYEGEHHGRVGIFPRTYIELL 62
Query: 96 DE 97
Sbjct: 63 SG 64
Score = 68.4 bits (168), Expect = 2e-15
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
A + + + +L + +++Y+ K+ + +W+ G R G+FP Y+
Sbjct: 8 RPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYI 59
Score = 57.6 bits (140), Expect = 2e-11
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G A + A + ++L L +G ++ I K+ W+EGE +VG FP +Y
Sbjct: 4 GSSGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEH-----HGRVGIFPRTY 58
Query: 275 VKVMGG 280
++++ G
Sbjct: 59 IELLSG 64
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 75.8 bits (187), Expect = 4e-18
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPSNYVVPYE 158
+ +A YPYD P DL+F + E + V ++ +WW + + G PSNYV
Sbjct: 7 GDIVVALYPYDGIHPDDLSFKKGEKMKVLEEHGEWWKAKSLLTKKEGFIPSNYVAKLN 64
Score = 54.6 bits (132), Expect = 2e-10
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEP 94
+ A+Y + + D+LSF+ G+ + V ++++ E W A L + G+ P +YV
Sbjct: 5 EQGDIVVALYPYDGIHPDDLSFKKGEKMKV-LEEHGE-WWKAKSLLTKKEGFIPSNYVAK 62
Query: 95 CD 96
+
Sbjct: 63 LN 64
Score = 49.6 bits (119), Expect = 2e-08
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
G+P+ + +I L PY + LS +G+ + + ++ WW+ + + G+
Sbjct: 1 GSPEEQ-GDIVVALYPYDGIHPDDLSFKKGEKMKVLEE-HGEWWKAKSLLTK---KEGFI 55
Query: 271 PASYVK 276
P++YV
Sbjct: 56 PSNYVA 61
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 75.7 bits (187), Expect = 4e-18
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
+A Y + E GDL F + +VI + KK +NDWWTG + R G+FP+NYV
Sbjct: 4 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 57
Score = 70.3 bits (173), Expect = 3e-16
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
+ A+Y F +L F+ GD+I + K +++ W G + G+ G FP +YVE
Sbjct: 5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 59
Score = 51.8 bits (125), Expect = 2e-09
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKT--TTGWWEGELQAKGKKRQVGWFPASYVKVM 278
A L + S L +G +I I KK+ WW G + + G FPA+YV+++
Sbjct: 6 AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGR-----EGIFPANYVELV 60
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 75.7 bits (187), Expect = 4e-18
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
S + +RA+Y F R DEL F+ GDII + + + W G +G+TG P +YV
Sbjct: 5 SSGKVFRALYTFEPRTPDELYFEEGDIIYI-TDMS-DTNWWKGTSKGRTGLIPSNYVAEQ 62
Query: 96 DE 97
Sbjct: 63 SG 64
Score = 71.9 bits (177), Expect = 1e-16
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEA 159
+ + A Y ++ P +L F + ++IY+T + +WW GT RTGL PSNYV
Sbjct: 7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQSG 64
Score = 56.8 bits (138), Expect = 4e-11
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G ++ L + + ++L G +I I + T WW+G K + G P++Y
Sbjct: 4 GSSGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTS-----KGRTGLIPSNY 58
Query: 275 VKVMGG 280
V G
Sbjct: 59 VAEQSG 64
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 75.3 bits (186), Expect = 5e-18
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
+ + A Y ++ P +L F + ++IY+T + +WW GT RTGL PSNYV
Sbjct: 4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55
Score = 74.1 bits (183), Expect = 1e-17
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
+ +RA+Y F R DEL F+ GDII + + + W G +G+TG P +YV
Sbjct: 4 KVFRALYTFEPRTPDELYFEEGDIIYI-TDMS-DTNWWKGTSKGRTGLIPSNYVA 56
Score = 54.5 bits (132), Expect = 2e-10
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
+ ++ L + + ++L G +I I + T WW+G K + G P++YV
Sbjct: 2 QVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTS-----KGRTGLIPSNYVA 56
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 75.3 bits (186), Expect = 5e-18
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 96 DETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
DETG+ E + Y Y P +LT + +++ + N DWW + R G P+ Y+
Sbjct: 2 DETGK---ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYL 58
Query: 155 VPYE 158
+
Sbjct: 59 KKLD 62
Score = 71.5 bits (176), Expect = 2e-16
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
+ +Y++ ++ EL+ + GDI+ + + W E+ G+ G+ P +Y++
Sbjct: 4 TGKELVLVLYDYQEKSPRELTVKKGDILTL--LNSTNKDWWKIEVNGRQGFVPAAYLKKL 61
Query: 96 D 96
D
Sbjct: 62 D 62
Score = 59.2 bits (144), Expect = 4e-12
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
E+ VL Y S +L++ +G ++ + T WW+ E+ + G+ PA+Y+K +
Sbjct: 7 ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEV-----NGRQGFVPAAYLKKL 61
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein
1; IRTKS-SH3, espfu, complex structure, protein
binding; NMR {Homo sapiens}
Length = 67
Score = 75.4 bits (186), Expect = 5e-18
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 39 RRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPC 95
++ + I+ N LSF GD+I + + + GWL GE GWFP SY +
Sbjct: 7 QKVKTIFPHTAGSNKTLLSFAQGDVITL-LIPEEKDGWLYGEHDVSKARGWFPSSYTKLL 65
Query: 96 DE 97
+E
Sbjct: 66 EE 67
Score = 57.7 bits (140), Expect = 2e-11
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 217 KPEIATVLAPYTATSSE-QLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWFPASY 274
K + + P+TA S++ LS ++G +I + + GW GE + GWFP+SY
Sbjct: 5 KKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKAR---GWFPSSY 61
Query: 275 VKVM 278
K++
Sbjct: 62 TKLL 65
Score = 55.4 bits (134), Expect = 1e-10
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 108 AAYPYD-STEPGDLTFNQDEVIYVTKKEND--WWTGTI--GDRTGLFPSNYVVPYE 158
+P+ + L+F Q +VI + E W G G FPS+Y E
Sbjct: 11 TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE 66
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 75.4 bits (186), Expect = 7e-18
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 97 ETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVV 155
+G E Y+ PY S ++ F + + V +K WW + G P++Y+
Sbjct: 2 SSGSSGEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLK 61
Query: 156 PYEAQTPAA 164
+ P++
Sbjct: 62 KAKDSGPSS 70
Score = 72.7 bits (179), Expect = 7e-17
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+G S +Y + + S++ DE+ F+ G + V +++N GW G+ GW P SY+
Sbjct: 3 SGSSGEEKYVTVQPYTSQSKDEIGFEKGVTVEV-IRKN-LEGWWYIRYLGKEGWAPASYL 60
Query: 93 EPCDETG 99
+ ++G
Sbjct: 61 KKAKDSG 67
Score = 61.2 bits (149), Expect = 1e-12
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
G+ E + PYT+ S +++ +G + + +K GWW + GW
Sbjct: 1 GSSGSSGEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYL-----GKEGWA 55
Query: 271 PASYVKVMGGGG 282
PASY+K G
Sbjct: 56 PASYLKKAKDSG 67
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 75.4 bits (186), Expect = 7e-18
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYE 158
E +A Y Y P ++T + +++ + N DWW + DR G P+ YV +
Sbjct: 5 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 61
Score = 72.0 bits (177), Expect = 1e-16
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
+ A+Y++ ++ E++ + GDI+ + + W E+ + G+ P +YV+
Sbjct: 3 TGKELVLALYDYQEKSPREVTMKKGDILTL--LNSTNKDWWKVEVNDRQGFVPAAYVKKL 60
Query: 96 DETGEVVPE 104
D E
Sbjct: 61 DPAQSASRE 69
Score = 58.9 bits (143), Expect = 8e-12
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G E+ L Y S ++++ +G ++ + T WW+ E+ + G+ PA+Y
Sbjct: 2 GTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV-----NDRQGFVPAAY 56
Query: 275 VKVM 278
VK +
Sbjct: 57 VKKL 60
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 74.9 bits (185), Expect = 7e-18
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
+ A Y +++ E +L F EV+ V N WWTG + ++ GLFP+NYV P
Sbjct: 2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55
Score = 71.8 bits (177), Expect = 8e-17
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
R RA+Y+F + DEL F+ G+++ V + + P W G L + G FP +YV P
Sbjct: 2 RWARALYDFEALEEDELGFRSGEVVEV-LDSS-NPSWWTGRLHNKLGLFPANYVAP 55
Score = 54.8 bits (133), Expect = 2e-10
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
A L + A ++L G+++ + + WW G L ++G FPA+YV M
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL-----HNKLGLFPANYVAPM 56
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 74.9 bits (185), Expect = 7e-18
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
+++ +++ DEL+ G+II K+ + GW G++ G+ G FP+++V +
Sbjct: 3 EAIVEFDYQAQHDDELTISVGEIITNIRKE--DGGWWEGQINGRRGLFPDNFVREIKK 58
Score = 70.6 bits (174), Expect = 2e-16
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
I + Y + +LT + E+I +KE+ WW G I R GLFP N+V
Sbjct: 5 IVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53
Score = 57.5 bits (140), Expect = 2e-11
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
A V Y A ++L++S G++I +K GWWEG++ G+ G FP ++V+ +
Sbjct: 4 AIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQI--NGR---RGLFPDNFVREI 56
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 75.4 bits (186), Expect = 7e-18
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
A Y+F + DELSF+ GDI+ V + + + W EL G+ G+ P++Y+E
Sbjct: 7 VGSMEAIAKYDFKATADDELSFKRGDILKV-LNEECDQNWYKAELNGKDGFIPKNYIEMK 65
Query: 96 DETGEVVPE 104
+V +
Sbjct: 66 PHPEFIVTD 74
Score = 70.0 bits (172), Expect = 7e-16
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 97 ETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 154
V IA Y + +T +L+F + +++ V +E D W+ + + G P NY+
Sbjct: 3 RRASVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYI 62
Score = 52.3 bits (126), Expect = 2e-09
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 210 AGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT-TGWWEGELQAKGKKRQVG 268
A + AT+ ++LS RG ++ + + W++ EL + G
Sbjct: 1 GSRRASVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAEL-----NGKDG 55
Query: 269 WFPASYVKVM 278
+ P +Y+++
Sbjct: 56 FIPKNYIEMK 65
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 74.6 bits (184), Expect = 8e-18
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
RA + F N DELSF GD+I V + E GW G G+TGWFP +YV
Sbjct: 5 SVVRAKFNFQQTNEDELSFSKGDVIHVTRVE--EGGWWEGTHNGRTGWFPSNYVRE 58
Score = 70.7 bits (174), Expect = 2e-16
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP 156
A + + T +L+F++ +VI+VT+ E WW GT RTG FPSNYV
Sbjct: 5 SVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 58
Score = 58.4 bits (142), Expect = 8e-12
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G + + T+ ++LS S+G +I + + GWWEG + GWFP++Y
Sbjct: 1 GPLGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGR-----TGWFPSNY 55
Query: 275 VKVM 278
V+ +
Sbjct: 56 VREI 59
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 74.9 bits (185), Expect = 8e-18
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
PE+ IA + Y +L+F + + + + DWW G GL P Y+
Sbjct: 6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYI 58
Score = 67.2 bits (165), Expect = 4e-15
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
A +++V R+ ELSF+ G +++ A W G G G P Y+
Sbjct: 10 IAKFDYVGRSARELSFKKGASLLL--YHRASEDWWEGRHNGIDGLVPHQYIV 59
Score = 60.3 bits (147), Expect = 2e-12
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
PE A Y S+ +LS +G +++ + + WWEG G P Y+ V
Sbjct: 6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGI-----DGLVPHQYIVV 60
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins,
CIN85, PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 75.0 bits (185), Expect = 8e-18
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 98
RA + F N DELSF GD+I V + E GW G G+TGWFP +YV +
Sbjct: 7 LVVRAKFNFQQTNEDELSFSKGDVIHVTRVE--EGGWWEGTHNGRTGWFPSNYVREIKPS 64
Score = 70.3 bits (173), Expect = 4e-16
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
A + + T +L+F++ +VI+VT+ E WW GT RTG FPSNYV
Sbjct: 6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
Score = 57.6 bits (140), Expect = 2e-11
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 214 KGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPAS 273
+ + T+ ++LS S+G +I + + GWWEG G+ GWFP++
Sbjct: 2 SANSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTH--NGR---TGWFPSN 56
Query: 274 YVKVM 278
YV+ +
Sbjct: 57 YVREI 61
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 75.1 bits (185), Expect = 9e-18
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYVVPYEA 159
P A Y ++ +PGDL F + I V K + DWW G + +TG+FP+NYV
Sbjct: 17 PIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNSG 76
Query: 160 QTPA 163
+
Sbjct: 77 PSSG 80
Score = 74.0 bits (182), Expect = 3e-17
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
+ +++ A+Y F + +L+FQ GD I V K ++ W G+LRGQTG
Sbjct: 6 SGHERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGI 65
Query: 87 FPESYVEPCDE 97
FP +YV
Sbjct: 66 FPANYVTMNSG 76
Score = 56.6 bits (137), Expect = 6e-11
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKT--TTGWWEGELQA 260
SS ++ +P T L + L+ G I + KT WWEG+L
Sbjct: 2 SSGSSGHERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKL-- 59
Query: 261 KGKKRQVGWFPASYVKVMGG 280
+ Q G FPA+YV + G
Sbjct: 60 ---RGQTGIFPANYVTMNSG 76
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 75.1 bits (185), Expect = 9e-18
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 32 PTGVSEYRRY-RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPES 90
P G E+ +Y RA+ ++ + L F+ DII + ++ E W G+L G+ G FP
Sbjct: 3 PLGSPEFAKYARALKDYNVSDTSLLPFKRNDIITI-TFKDQENKWFMGQLNGKEGSFPVD 61
Query: 91 YVEPCDET 98
+VE
Sbjct: 62 HVEILLSD 69
Score = 74.7 bits (184), Expect = 1e-17
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYVVPYEAQ 160
+Y A Y+ ++ L F ++++I +T K EN W+ G + + G FP ++V +
Sbjct: 10 AKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSD 69
Query: 161 TPAAAVDPTPATPV 174
P P P PV
Sbjct: 70 VPP----PQPVHPV 79
Score = 53.1 bits (128), Expect = 1e-09
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 210 AGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT-TGWWEGELQAKGKKRQVG 268
+ + A L Y + + L R +I I K W+ G+L K G
Sbjct: 2 GPLGSPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGK-----EG 56
Query: 269 WFPASYVKVM 278
FP +V+++
Sbjct: 57 SFPVDHVEIL 66
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 74.7 bits (184), Expect = 1e-17
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 36 SEYRRYRAIYEFVS-RNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYV 92
S ++ + I+ + N LSF GD++ + + + GWL GE GWFP SY
Sbjct: 5 SSGQKVKTIFPHTAGNNKTLLSFAQGDVLTL-LIPEEKDGWLYGEHDTTKARGWFPSSYT 63
Query: 93 EPCDE 97
+
Sbjct: 64 KLLSG 68
Score = 57.0 bits (138), Expect = 4e-11
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 214 KGKKPEIATVLAPYTA-TSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWFP 271
G + + P+TA + LS ++G ++ + + GW GE + GWFP
Sbjct: 3 SGSSGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKAR---GWFP 59
Query: 272 ASYVKVMGG 280
+SY K++ G
Sbjct: 60 SSYTKLLSG 68
Score = 52.7 bits (127), Expect = 1e-09
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 103 PEYYIAAYPYDSTE-PGDLTFNQDEVIYVTKKEND--WWTGTI--GDRTGLFPSNYVVPY 157
+ +P+ + L+F Q +V+ + E W G G FPS+Y
Sbjct: 7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL 66
Query: 158 EAQT 161
+
Sbjct: 67 SGPS 70
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 74.6 bits (184), Expect = 1e-17
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 97 ETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVV 155
+G E Y+ Y E +L+ EV+ V +K E+ WW + + G P+ Y+
Sbjct: 2 SSGSSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLE 61
Query: 156 PYEAQTPAA 164
+ +
Sbjct: 62 AQNSGPSSG 70
Score = 72.3 bits (178), Expect = 8e-17
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWF 87
S+ +G+ +Y + + + ELS Q G+++ V +++N E GW + GW
Sbjct: 1 GSSGSSGL---EQYVVVSNYKKQENSELSLQAGEVVDV-IEKN-ESGWWFVSTSEEQGWV 55
Query: 88 PESYVEPCDET 98
P +Y+E +
Sbjct: 56 PATYLEAQNSG 66
Score = 61.2 bits (149), Expect = 1e-12
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
G+ E V++ Y + +LSL G+++ + +K +GWW + GW
Sbjct: 1 GSSGSSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTS-----EEQGWV 55
Query: 271 PASYVKVMGGG 281
PA+Y++ G
Sbjct: 56 PATYLEAQNSG 66
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 74.2 bits (183), Expect = 1e-17
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 99 GEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
G + A Y YD+ + +L+FN +++I + K+ + WWTG + + GLFP+NYV
Sbjct: 1 GPLGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57
Score = 73.4 bits (181), Expect = 3e-17
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
+ +A+Y + +++ DELSF DII + +K++ GW G LRG+ G FP +YV
Sbjct: 6 PQCKALYAYDAQDTDELSFNANDIIDI-IKED-PSGWWTGRLRGKQGLFPNNYVTK 59
Score = 54.9 bits (133), Expect = 2e-10
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
L Y A +++LS + +I I K+ +GWW G L +GK G FP +YV
Sbjct: 5 SPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRL--RGK---QGLFPNNYVTK 59
Query: 278 M 278
+
Sbjct: 60 I 60
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 74.7 bits (184), Expect = 1e-17
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
S RR +A+ +F + DEL F+ DII + ++ + GEL G GWFP +VE
Sbjct: 5 SSGRRAKALLDFERHDDDELGFRKNDIITIISQK--DEHCWVGELNGLRGWFPAKFVEVL 62
Query: 96 DETGEVVP 103
DE +
Sbjct: 63 DERSKEYS 70
Score = 70.8 bits (174), Expect = 3e-16
Identities = 11/69 (15%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQTPA 163
A ++ + +L F ++++I + +++ W G + G FP+ +V + ++
Sbjct: 9 RAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKE 68
Query: 164 AAVDPTPAT 172
++ P++
Sbjct: 69 YSIASGPSS 77
Score = 52.3 bits (126), Expect = 2e-09
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
G+ A L + ++L + +I I + W GEL GWF
Sbjct: 1 GSSGSSGRR-AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELN-----GLRGWF 54
Query: 271 PASYVKVM 278
PA +V+V+
Sbjct: 55 PAKFVEVL 62
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 68
Score = 74.2 bits (183), Expect = 1e-17
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
RR + + ++ +N DEL + GDII V + E GW G L G+TG FP ++++
Sbjct: 8 RRCQVAFSYLPQNDDELELKVGDIIEVVGEV--EEGWWEGVLNGKTGMFPSNFIKE 61
Score = 68.4 bits (168), Expect = 2e-15
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYEA 159
A+ Y +L ++I V + + WW G + +TG+FPSN++
Sbjct: 8 RRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSG 64
Score = 54.9 bits (133), Expect = 2e-10
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G V Y + ++L L G +I + + GWWEG L + G FP+++
Sbjct: 4 GSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL-----NGKTGMFPSNF 58
Query: 275 VKVMGG 280
+K + G
Sbjct: 59 IKELSG 64
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 75.5 bits (185), Expect = 2e-17
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 15/94 (15%)
Query: 16 AWDNAPAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE--- 72
+ T P G + +A +++ + + DEL + GD+++V QN E
Sbjct: 24 VNGAVEGSTTTGRLDLPPGFM--FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQD 81
Query: 73 PGWLAG----------ELRGQTGWFPESYVEPCD 96
GWL G EL G FPE++ E
Sbjct: 82 EGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ 115
Score = 55.5 bits (133), Expect = 3e-10
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 16/87 (18%)
Query: 88 PESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND------WWTGT 141
S + A + Y +T+ +L +V+ V +N W G
Sbjct: 29 EGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGV 88
Query: 142 ----------IGDRTGLFPSNYVVPYE 158
+ G+FP N+ +
Sbjct: 89 KESDWNQHKELEKCRGVFPENFTERVQ 115
Score = 47.0 bits (111), Expect = 4e-07
Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 13/104 (12%)
Query: 188 TSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEI---ATVLAPYTATSSEQLSLSRGQLIM 244
+S + + + P YTAT +++L L G +++
Sbjct: 11 SSGLVPRGSHMATVNGAVEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVL 70
Query: 245 IRKKTTT-----GWWEGELQAKGKKR-----QVGWFPASYVKVM 278
+ GW G ++ + G FP ++ + +
Sbjct: 71 VIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 114
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 73.7 bits (182), Expect = 2e-17
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
+ +A+Y++ ++ GDEL+F+ GD I+V K GW GEL G+ GW P +YV+
Sbjct: 5 QVKALYDYDAQTGDELTFKEGDTIIVHQKD--PAGWWEGELNGKRGWVPANYVQD 57
Score = 69.1 bits (170), Expect = 1e-15
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
A Y YD+ +LTF + + I V +K WW G + + G P+NYV
Sbjct: 5 QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 55
Score = 55.3 bits (134), Expect = 1e-10
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
L Y A + ++L+ G I++ +K GWWEGEL GK GW PA+YV+ +
Sbjct: 6 VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGEL--NGK---RGWVPANYVQDI 58
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 73.9 bits (182), Expect = 2e-17
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 39 RRYRAIYEFVS-RNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPC 95
R +AI+ + N LSF+ GD+I + V + A GW GE GWFP SY
Sbjct: 8 MRVKAIFSHAAGDNSTLLSFKEGDLITLLVPE-ARDGWHYGESEKTKMRGWFPFSYTRVL 66
Query: 96 D 96
D
Sbjct: 67 D 67
Score = 55.8 bits (135), Expect = 9e-11
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 213 PKGKKPEIATVLAPYTA-TSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWF 270
P G + + A +S LS G LI + + GW GE + + GWF
Sbjct: 2 PLGSGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMR---GWF 58
Query: 271 PASYVKVM 278
P SY +V+
Sbjct: 59 PFSYTRVL 66
Score = 54.2 bits (131), Expect = 3e-10
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 103 PEYYIAAYPYDSTE-PGDLTFNQDEVIYVTKKEND--WWTGTI--GDRTGLFPSNYVVPY 157
A + + + + L+F + ++I + E W G G FP +Y
Sbjct: 7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL 66
Query: 158 E 158
+
Sbjct: 67 D 67
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 74.3 bits (183), Expect = 2e-17
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
A + + +L F +VI++ + N DW GT+ TG+FP ++V
Sbjct: 22 EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 70
Score = 73.5 bits (181), Expect = 3e-17
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
R A+++F + EL+F+ GD+I + + + WL G +RG TG FP S+V+
Sbjct: 16 MAAPRAEALFDFTGNSKLELNFKAGDVIFL-LSRI-NKDWLEGTVRGATGIFPLSFVKIL 73
Query: 96 DETGE 100
+ E
Sbjct: 74 KDFPE 78
Score = 58.1 bits (141), Expect = 2e-11
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
A L +T S +L+ G +I + + W EG ++ G FP S+VK++
Sbjct: 21 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGA-----TGIFPLSFVKIL 73
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 73.4 bits (181), Expect = 3e-17
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYEA 159
P ++A Y + ++ L+ + E + V ++ W + G PS Y+ P +
Sbjct: 5 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVNS 63
Score = 69.5 bits (171), Expect = 8e-16
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 8 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSAYITPVN 62
Score = 51.4 bits (124), Expect = 3e-09
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTG-WWEGELQAKGKKRQVGWFPASYVK 276
P + L + A+ LS+++G+ + + G W E + K GW P++Y+
Sbjct: 5 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT-----KNGQGWVPSAYIT 59
Query: 277 VM 278
+
Sbjct: 60 PV 61
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 73.4 bits (181), Expect = 3e-17
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQTP 162
Y+A Y + E DL ++I + + N DWW G I DR G FP+N+V +
Sbjct: 8 NTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSGPSS 67
Query: 163 A 163
Sbjct: 68 G 68
Score = 71.1 bits (175), Expect = 2e-16
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
Y A+Y+FV + ++L +PGDII + ++ + W G+++ + G+FP ++V+
Sbjct: 8 NTYVALYKFVPQENEDLEMRPGDIITL-LEDS-NEDWWKGKIQDRIGFFPANFVQRLSG 64
Score = 56.5 bits (137), Expect = 4e-11
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G L + +E L + G +I + + + WW+G++ + ++G+FPA++
Sbjct: 4 GSSGNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKI-----QDRIGFFPANF 58
Query: 275 VKVMGG 280
V+ + G
Sbjct: 59 VQRLSG 64
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 73.4 bits (181), Expect = 3e-17
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
S R +A+ + +N +L F GD+I++ +Q + W GE+ G +G FP S VE
Sbjct: 5 SSGPRAKALCNYRGKNPGDLKFNKGDVILL-RRQL-DENWYQGEINGVSGIFPASSVEVI 62
Query: 96 DE 97
Sbjct: 63 SG 64
Score = 69.6 bits (171), Expect = 7e-16
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
A Y PGDL FN+ +VI + ++ + +W+ G I +G+FP++ V
Sbjct: 7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSV 59
Score = 57.6 bits (140), Expect = 2e-11
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
G+ P A L Y + L ++G +I++R++ W++GE+ G F
Sbjct: 1 GSSGSSGPR-AKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGV-----SGIF 54
Query: 271 PASYVKVMGG 280
PAS V+V+ G
Sbjct: 55 PASSVEVISG 64
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 74.0 bits (182), Expect = 3e-17
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 97 ETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVV 155
+ E E +A Y Y P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 11 GSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 70
Query: 156 PYEAQTP 162
A
Sbjct: 71 KLAAAWS 77
Score = 69.0 bits (169), Expect = 2e-15
Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
+ + A+Y++ ++ E++ + GDI+ + + W E+ + G+
Sbjct: 6 HHHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILT--LLNSTNKDWWKVEVNDRQGF 63
Query: 87 FPESYVEPCDE 97
P +YV+
Sbjct: 64 VPAAYVKKLAA 74
Score = 58.2 bits (141), Expect = 2e-11
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 208 AQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQV 267
E+ L Y S ++++ +G ++ + T WW+ E+ +
Sbjct: 7 HHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV-----NDRQ 61
Query: 268 GWFPASYVKVM 278
G+ PA+YVK +
Sbjct: 62 GFVPAAYVKKL 72
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 73.0 bits (180), Expect = 4e-17
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
R +Y+F N EL F+ GDII + Q + W G + G++G+FP +YVE
Sbjct: 7 RGLYDFEPENQGELGFKEGDIITL-TNQI-DENWYEGMIHGESGFFPINYVEV 57
Score = 72.3 bits (178), Expect = 7e-17
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
Y ++ G+L F + ++I +T + + +W+ G I +G FP NYV
Sbjct: 7 RGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYV 55
Score = 56.9 bits (138), Expect = 4e-11
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
L + + +L G +I + + W+EG + + G+FP +YV+V+
Sbjct: 6 CRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGE-----SGFFPINYVEVI 58
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 73.1 bits (180), Expect = 5e-17
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCD 96
+R A+Y+F N +EL GDI+ + ++ GWL E +TG PE +V
Sbjct: 6 QRAVALYDFEPENDNELRLAEGDIVFI-SYKH-GQGWLVAENESGSKTGLVPEEFVSYIQ 63
Query: 97 ETGEVVPEYY 106
E ++
Sbjct: 64 PELEHHHHHH 73
Score = 65.0 bits (159), Expect = 4e-14
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 101 VVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT--IGDRTGLFPSNYV 154
+V + +A Y ++ +L + ++++++ K W G +TGL P +V
Sbjct: 3 IVNQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 59
Score = 57.7 bits (140), Expect = 2e-11
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
+ A L + + +L L+ G ++ I K GW E ++ K G P +V +
Sbjct: 6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSK---TGLVPEEFVSYI 62
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 73.1 bits (180), Expect = 5e-17
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQT 161
P IA + Y +L+F + + + ++ + DWW G GL P Y+V +
Sbjct: 9 PIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTSG 68
Query: 162 PAA 164
P++
Sbjct: 69 PSS 71
Score = 70.0 bits (172), Expect = 5e-16
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
E A +++V R ELSF+ G +++ Q A W G G G P Y+
Sbjct: 7 GEPIEAIAKFDYVGRTARELSFKKGASLLL--YQRASDDWWEGRHNGIDGLIPHQYIVVQ 64
Query: 96 DETG 99
D +G
Sbjct: 65 DTSG 68
Score = 60.0 bits (146), Expect = 3e-12
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 212 TPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFP 271
+ +P A Y ++ +LS +G +++ ++ + WWEG G P
Sbjct: 3 SGSSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGI-----DGLIP 57
Query: 272 ASYVKVMGGGG 282
Y+ V G
Sbjct: 58 HQYIVVQDTSG 68
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 73.2 bits (180), Expect = 6e-17
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQ 160
V A Y +++ E +LTF E+I V + +WW G GLFPSN+V
Sbjct: 16 VARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNI 75
Query: 161 TPAAAVDPTPAT 172
AA P++
Sbjct: 76 ETEAAAVSGPSS 87
Score = 68.6 bits (168), Expect = 4e-15
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
+ S R+ RA+Y+F + +EL+F+ G+II+V + W GE G
Sbjct: 6 SGSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDS--DANWWKGENHRGIGL 63
Query: 87 FPESYVEPCDET 98
FP ++V
Sbjct: 64 FPSNFVTTNLNI 75
Score = 56.7 bits (137), Expect = 7e-11
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
SS ++ K L + A +L+ G++I++ + WW+GE
Sbjct: 2 SSGSSGSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGEN---- 57
Query: 263 KKRQVGWFPASYVKVM 278
R +G FP+++V
Sbjct: 58 -HRGIGLFPSNFVTTN 72
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 72.2 bits (178), Expect = 6e-17
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
A Y +++ E +LTF E+I V + +WW G TGLFPSN+V
Sbjct: 6 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57
Score = 70.3 bits (173), Expect = 4e-16
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
RR RA+Y+F + +EL+F+ G++I V + + + W GE TG FP ++V
Sbjct: 6 RRVRALYDFEAVEDNELTFKHGELITV-LDDS-DANWWQGENHRGTGLFPSNFVT 58
Score = 51.1 bits (123), Expect = 4e-09
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
L + A +L+ G+LI + + WW+GE R G FP+++V
Sbjct: 8 VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGEN-----HRGTGLFPSNFVT 58
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 72.7 bits (179), Expect = 7e-17
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNA-EPGWLAGELRGQTGWFPESY 91
+G S +A+Y++ + DELSF G II + K+N + G+ GE G+ G FP
Sbjct: 3 SGSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVL 62
Query: 92 VEPCDE 97
VE
Sbjct: 63 VEELSS 68
Score = 68.9 bits (169), Expect = 2e-15
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 98 TGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----WWTGTIGDRTGLFPSNY 153
+G + A Y Y+ +L+F + +I + KEN +W G R G+FPS
Sbjct: 3 SGSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVL 62
Query: 154 VVPYEAQTPAA 164
V + +
Sbjct: 63 VEELSSGPSSG 73
Score = 58.1 bits (141), Expect = 2e-11
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT---GWWEGELQAKGKKRQV 267
G+ L Y + ++LS G +I I K G+WEGE + +
Sbjct: 1 GSSGSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGR-----I 55
Query: 268 GWFPASYVKVMGGG 281
G FP+ V+ + G
Sbjct: 56 GVFPSVLVEELSSG 69
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 72.7 bits (179), Expect = 7e-17
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 93 EPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPS 151
+ A Y +++ E +LTF E+I V + +WW G GLFPS
Sbjct: 7 HHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPS 66
Query: 152 NYV 154
N+V
Sbjct: 67 NFV 69
Score = 71.2 bits (175), Expect = 3e-16
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 30 TDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPE 89
+ E R+ RAIY+F + +EL+F+ G+II V + + +P W GE G FP
Sbjct: 9 SHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITV-LDDS-DPNWWKGETHQGIGLFPS 66
Query: 90 SYVE 93
++V
Sbjct: 67 NFVT 70
Score = 54.6 bits (132), Expect = 3e-10
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 209 QAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVG 268
+ + + + A +L+ G++I + + WW+GE + +G
Sbjct: 8 HSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGET-----HQGIG 62
Query: 269 WFPASYVK 276
FP+++V
Sbjct: 63 LFPSNFVT 70
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 72.3 bits (178), Expect = 8e-17
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYE 158
E ++A Y +T+ L+F + E I + ++ DWW G G P+N+V +
Sbjct: 8 EEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHS 63
Score = 70.4 bits (173), Expect = 5e-16
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
S + AI ++ + + +LSF G+ I+ + + W GE G G+ P ++V
Sbjct: 5 SSGEEFVAIADYAATDETQLSFLRGEKIL--ILRQTTADWWWGERAGCCGYIPANHVGKH 62
Query: 96 DE 97
Sbjct: 63 SG 64
Score = 56.1 bits (136), Expect = 7e-11
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G E +A Y AT QLS RG+ I+I ++TT WW GE G+ PA++
Sbjct: 4 GSSGEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGER-----AGCCGYIPANH 58
Query: 275 VKVMGG 280
V G
Sbjct: 59 VGKHSG 64
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 72.8 bits (179), Expect = 8e-17
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPSNYVVPYE 158
+A Y Y S P DL+F + + + V ++ +WW + G PSNYV +
Sbjct: 4 IIVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 60
Score = 52.4 bits (126), Expect = 2e-09
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 96
A+Y++VS + D+LSFQ GD ++V ++++ E W A L + G+ P +YV D
Sbjct: 6 VVALYDYVSWSPDDLSFQKGDQMVV-LEESGE-WWKARSLATRKEGYIPSNYVARVD 60
Score = 45.5 bits (108), Expect = 7e-07
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
+ I L Y + S + LS +G +++ ++ + WW+ A + G+ P++YV
Sbjct: 2 EDIIVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATR---KEGYIPSNYVA 57
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 72.4 bits (178), Expect = 1e-16
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQT 161
A + + + +L F +VI V N DWW G I D G FP+++V + Q
Sbjct: 10 IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQE 69
Query: 162 PAAAVDPTPAT 172
P++
Sbjct: 70 DEVEEGSGPSS 80
Score = 69.0 bits (169), Expect = 2e-15
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWF 87
S+ +G A+++ V+ EL+F+ GD+I V N W G++ + GWF
Sbjct: 1 GSSGSSG-DSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASN--KDWWWGQIDDEEGWF 57
Query: 88 PESYVEPCDETGEVVPE 104
P S+V + V E
Sbjct: 58 PASFVRLWVNQEDEVEE 74
Score = 56.6 bits (137), Expect = 6e-11
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 210 AGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGW 269
+ G A + + ++ +L+ G +I + + WW G++ + GW
Sbjct: 2 SSGSSGDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQI-----DDEEGW 56
Query: 270 FPASYVKVM 278
FPAS+V++
Sbjct: 57 FPASFVRLW 65
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 72.5 bits (178), Expect = 1e-16
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 94 PCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPS 151
P +A Y Y++ DL+F + + + V ++ +WW + G PS
Sbjct: 16 PGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPS 75
Query: 152 NYVVPYE 158
NYV +
Sbjct: 76 NYVARVD 82
Score = 56.7 bits (137), Expect = 7e-11
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 20 APAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE 79
P + SE A+Y++ + + ++LSFQ GD ++V ++++ E W A
Sbjct: 7 GPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVV-LEESGE-WWKARS 64
Query: 80 LR-GQTGWFPESYVEPCD 96
L + G+ P +YV D
Sbjct: 65 LATRKEGYIPSNYVARVD 82
Score = 48.6 bits (116), Expect = 5e-08
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 194 GSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGW 253
G S + G + I L Y A E LS +G +++ ++ + W
Sbjct: 1 GPLGSPGPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEW 59
Query: 254 WEGELQAKGKKRQVGWFPASYVK 276
W+ A K+ G+ P++YV
Sbjct: 60 WKARSLATRKE---GYIPSNYVA 79
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 71.8 bits (177), Expect = 1e-16
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCD 96
+ +RAI+ FV R+ DEL + D ++V ++ AE W G G FP Y
Sbjct: 4 QTHRAIFRFVPRHEDELELEVDDPLLVELQ--AEDYWYEAYNMRTGARGVFPAYYAIEVT 61
Query: 97 E 97
+
Sbjct: 62 K 62
Score = 59.1 bits (144), Expect = 4e-12
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVVP 156
+ + A + + +L D+ + V + D W+ G+FP+ Y +
Sbjct: 4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 59
Score = 52.6 bits (127), Expect = 1e-09
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
+ + + ++L L +++ + W+E G G FPA Y +
Sbjct: 4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTG---ARGVFPAYYAIEV 60
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 71.6 bits (176), Expect = 1e-16
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGT--IGDRTGLFPSNYVVP 156
IA + Y+ + GDL F + E + + ++ +WW + G P N+V
Sbjct: 6 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61
Score = 50.4 bits (121), Expect = 6e-09
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEP 94
+ A++ + + +L F+ G+ + + W + GQ G+ P ++V
Sbjct: 5 QDNLVIALHSYEPSHDGDLGFEKGEQLRI---LEQSGEWWKAQSLTTGQEGFIPFNFVAK 61
Score = 46.9 bits (112), Expect = 1e-07
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
G+P + + L Y + L +G+ + I ++ + WW+ + G Q G+
Sbjct: 1 GSPL--QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTG---QEGFI 54
Query: 271 PASYVK 276
P ++V
Sbjct: 55 PFNFVA 60
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 72.0 bits (177), Expect = 1e-16
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 28 ASTDPTGV--SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG 85
+S DP S + AIY++ DELSFQ G II V +K+N + GW G + G TG
Sbjct: 5 SSGDPPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYV-IKKN-DDGWYEGVMNGVTG 62
Query: 86 WFPESYVEPCDE 97
FP +YVE
Sbjct: 63 LFPGNYVESISG 74
Score = 70.8 bits (174), Expect = 4e-16
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQTP 162
E +A Y Y + +L+F + +IYV KK ++ W+ G + TGLFP NYV +
Sbjct: 18 EKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISGPSS 77
Query: 163 A 163
Sbjct: 78 G 78
Score = 58.1 bits (141), Expect = 2e-11
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
SS ++ E + YT ++LS G +I + KK GW+EG +
Sbjct: 2 SSGSSGDPPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVM---- 57
Query: 263 KKRQVGWFPASYVKVMGG 280
G FP +YV+ + G
Sbjct: 58 -NGVTGLFPGNYVESISG 74
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 71.9 bits (177), Expect = 1e-16
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 28 ASTDPTGVS--EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG 85
+ DP + + +A+Y+F N EL F+ GD+I + Q + W G L GQ+G
Sbjct: 1 GAMDPEFMPPLDQPSCKALYDFEPENDGELGFREGDLITL-TNQI-DENWYEGMLHGQSG 58
Query: 86 WFPESYVE 93
+FP SYV+
Sbjct: 59 FFPLSYVQ 66
Score = 69.6 bits (171), Expect = 8e-16
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
A Y ++ G+L F + ++I +T + + +W+ G + ++G FP +YV
Sbjct: 14 PSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYV 65
Score = 55.7 bits (135), Expect = 1e-10
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 207 AAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQ 266
A L + + +L G LI + + W+EG L +
Sbjct: 2 AMDPEFMPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQ----- 56
Query: 267 VGWFPASYVKVM 278
G+FP SYV+V+
Sbjct: 57 SGFFPLSYVQVL 68
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 71.4 bits (176), Expect = 1e-16
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPY 157
EY A + ++ + DL F + +++ + K E WW + + G+ P YV Y
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57
Score = 64.5 bits (158), Expect = 5e-14
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
RA+++F + ++L F+ GDI+ + + E W A + G+ G P YVE
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRI-RDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
Score = 52.1 bits (126), Expect = 1e-09
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
E L + E L +G ++ IR K WW E ++G + G P YV+
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEG---KRGMIPVPYVE 55
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 72.0 bits (177), Expect = 1e-16
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQ---T 84
S+ +G ++ RR + IY+ + N DEL+F G++I+V ++ + W G + GQ
Sbjct: 1 GSSGSSG-NKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEE--DQEWWIGHIEGQPERK 57
Query: 85 GWFPESYVEPCDETG 99
G FP S+V ++G
Sbjct: 58 GVFPVSFVHILSDSG 72
Score = 68.9 bits (169), Expect = 2e-15
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI---GDRTGLFPSNYVVPYE 158
Y + +LTF + EVI VT +E+ +WW G I +R G+FP ++V
Sbjct: 10 VRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILS 69
Query: 159 AQTPAAA 165
P++
Sbjct: 70 DSGPSSG 76
Score = 58.5 bits (142), Expect = 1e-11
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 213 PKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
G K + A + ++L+ G++I++ + WW G + +G+ + G FP
Sbjct: 5 SSGNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHI--EGQPERKGVFPV 62
Query: 273 SYVKVM 278
S+V ++
Sbjct: 63 SFVHIL 68
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 71.6 bits (176), Expect = 2e-16
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD-----RTGLFPSNYV 154
VP +A +PY S DL F +D+ I VT E+ W+ G D G+FP ++V
Sbjct: 6 VPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 64
Score = 60.8 bits (148), Expect = 1e-12
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG-----QTGWFPESYVE 93
+ A + + S D+L+F+ I+V + W GE + G FP+S+V
Sbjct: 9 KVVAQFPYKSDYEDDLNFEKDQEIIV-TSVE-DAEWYFGEYQDSNGDVIEGIFPKSFVA 65
Score = 58.9 bits (143), Expect = 8e-12
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 226 PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG 279
PY + + L+ + Q I++ W+ GE Q G FP S+V V G
Sbjct: 15 PYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQG 68
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 71.5 bits (176), Expect = 2e-16
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
S RA+Y+F N EL F+ GDII + + W G L G +G+FP +YVE
Sbjct: 5 SSGPCCRALYDFEPENEGELGFKEGDIIT--LTNQIDENWYEGMLHGHSGFFPINYVEIL 62
Query: 96 DETGEVVP 103
P
Sbjct: 63 VALPHSGP 70
Score = 68.8 bits (169), Expect = 2e-15
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV---VPYEAQ 160
A Y ++ G+L F + ++I +T + + +W+ G + +G FP NYV V
Sbjct: 9 CCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHS 68
Query: 161 TPAAA 165
P++
Sbjct: 69 GPSSG 73
Score = 53.4 bits (129), Expect = 7e-10
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
G+ P L + + +L G +I + + W+EG L G+F
Sbjct: 1 GSSGSSGP-CCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGH-----SGFF 54
Query: 271 PASYVKVM 278
P +YV+++
Sbjct: 55 PINYVEIL 62
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 71.6 bits (176), Expect = 2e-16
Identities = 13/61 (21%), Positives = 26/61 (42%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQTP 162
A + + + L F++ ++I V +++ +WW G + G FP +YV
Sbjct: 10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQQENWWFGEVHGGRGWFPKSYVKIIPGSES 69
Query: 163 A 163
Sbjct: 70 G 70
Score = 70.4 bits (173), Expect = 4e-16
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 30 TDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPE 89
+ + E + +A+ + ++ + L+F DII V +Q W GE+ G GWFP+
Sbjct: 2 SSGSSGVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQE---NWWFGEVHGGRGWFPK 58
Query: 90 SYVEPCDET 98
SYV+ +
Sbjct: 59 SYVKIIPGS 67
Score = 51.6 bits (124), Expect = 3e-09
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 212 TPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFP 271
G + A L +TA L+ S+ +I + ++ WW GE+ GWFP
Sbjct: 4 GSSGVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQE-NWWFGEVH-----GGRGWFP 57
Query: 272 ASYVKVM 278
SYVK++
Sbjct: 58 KSYVKII 64
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 71.5 bits (176), Expect = 2e-16
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNA-EPGWLAGELRGQTGWFPESYVEP 94
S RA+Y+ DEL+F GDI+ + + GW L G+ G P + ++
Sbjct: 5 SSGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64
Query: 95 CDE 97
Sbjct: 65 LSG 67
Score = 62.7 bits (153), Expect = 3e-13
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTIGDRTGLFPSNYV 154
A Y +L F++ +++ + ++ WW + R GL P+N +
Sbjct: 8 LLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRL 62
Score = 51.5 bits (124), Expect = 4e-09
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT---GWWEGELQAKGKKRQVGWFP 271
G +A L S++L+ SRG ++ I ++ GWW+ L + G P
Sbjct: 4 GSSGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGR-----QGLAP 58
Query: 272 ASYVKVMGG 280
A+ ++++ G
Sbjct: 59 ANRLQILSG 67
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 71.9 bits (176), Expect = 2e-16
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMV-------------PVKQNAEPG 74
E +YRA+Y F ++L PGD+++V + G
Sbjct: 1 GPLGSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVG 60
Query: 75 WLAG--ELRGQTGWFPESYVE 93
W+ G E Q G FP +YVE
Sbjct: 61 WMPGLNERTRQRGDFPGTYVE 81
Score = 46.9 bits (111), Expect = 3e-07
Identities = 17/79 (21%), Positives = 23/79 (29%), Gaps = 18/79 (22%)
Query: 94 PCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----------------W 137
P Y A YP+ P DL +V+ V++ W
Sbjct: 2 PLGSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGW 61
Query: 138 WTGTIG--DRTGLFPSNYV 154
G + G FP YV
Sbjct: 62 MPGLNERTRQRGDFPGTYV 80
Score = 46.5 bits (110), Expect = 3e-07
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 18/89 (20%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT---------------GWWE 255
G+ G + L P+ E L L G ++++ + GW
Sbjct: 4 GSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMP 63
Query: 256 GELQAKGKKRQVGWFPASYVKVMGGGGIS 284
G + ++ G FP +YV+ +G ++
Sbjct: 64 GLNERTRQR---GDFPGTYVEFLGPVALA 89
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 71.6 bits (176), Expect = 2e-16
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 39 RRYRAIYEFVSRNG-------DELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
RR A+Y++ R EL+F GDII V + E G+ GEL GQ G P ++
Sbjct: 8 RRMVALYDYDPRESSPNVDVEAELTFCTGDIITV-FGEIDEDGFYYGELNGQKGLVPSNF 66
Query: 92 VEPC 95
+E
Sbjct: 67 LEEV 70
Score = 60.5 bits (147), Expect = 2e-12
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 103 PEYYIAAYPYDSTEP-------GDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNY 153
+A Y YD E +LTF ++I V + E+ ++ G + + GL PSN+
Sbjct: 7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNF 66
Query: 154 V 154
+
Sbjct: 67 L 67
Score = 45.1 bits (107), Expect = 8e-07
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 215 GKKPEIATVLAPYTATSS-------EQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQ 266
G L Y S +L+ G +I + + G++ GEL Q
Sbjct: 4 GSSGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNG-----Q 58
Query: 267 VGWFPASYVKVMGG 280
G P+++++ + G
Sbjct: 59 KGLVPSNFLEEVSG 72
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 71.7 bits (176), Expect = 2e-16
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 97 ETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVV 155
E + + Y + +L+ + + V +K +D WW G+ + G FPSNYV
Sbjct: 11 ERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVT 70
Query: 156 PYEAQTPAAAVDPTPAT 172
V P++
Sbjct: 71 EEGDSPLGDHVGSGPSS 87
Score = 69.8 bits (171), Expect = 1e-15
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 98
+ +++ DELS G ++V K GW G GQ GWFP +YV ++
Sbjct: 19 PAYVKFNYMAEREDELSLIKGTKVIVMEKC--SDGWWRGSYNGQVGWFPSNYVTEEGDS 75
Score = 60.2 bits (146), Expect = 4e-12
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
SS ++ G A V Y A ++LSL +G +++ +K + GWW G +
Sbjct: 2 SSGSSGDPGERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQ- 60
Query: 263 KKRQVGWFPASYVKVMGG 280
VGWFP++YV G
Sbjct: 61 ----VGWFPSNYVTEEGD 74
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 70.7 bits (174), Expect = 2e-16
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEP 94
++ R RA+Y++ + DELSF+ GD + + + E GW G L GQ G +P +YVE
Sbjct: 1 AKGVRVRALYDYDGQEQDELSFKAGDELTK-LGEEDEQGWCRGRLDSGQLGLYPANYVEA 59
Score = 64.9 bits (159), Expect = 4e-14
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGD-RTGLFPSNYV 154
A Y YD E +L+F + + + E W G + + GL+P+NYV
Sbjct: 7 RALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYV 57
Score = 46.4 bits (111), Expect = 2e-07
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIM-IRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
L Y ++LS G + + ++ GW G L + Q+G +PA+YV+ +
Sbjct: 6 VRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSG----QLGLYPANYVEAI 60
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 70.7 bits (174), Expect = 3e-16
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVE 93
+R A+Y+F N +EL GDI+ + ++ GWL E +TG PE +V
Sbjct: 2 QRAVALYDFEPENDNELRLAEGDIVFI-SYKH-GQGWLVAENESGSKTGLVPEEFVS 56
Score = 62.6 bits (153), Expect = 3e-13
Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYV 154
+ +A Y ++ +L + ++++++ K W G +TGL P +V
Sbjct: 2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 55
Score = 57.2 bits (139), Expect = 3e-11
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
+ A L + + +L L+ G ++ I K GW E ++ K G P +V +
Sbjct: 2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSK---TGLVPEEFVSYI 58
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 70.8 bits (174), Expect = 3e-16
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV---VPYEAQTP 162
+A + Y +L+F + +V+ + ++ +DWW G GL P Y+ E Q
Sbjct: 14 VACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTEKQVV 73
Query: 163 AAA 165
A
Sbjct: 74 GAG 76
Score = 70.8 bits (174), Expect = 4e-16
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWF 87
S+ +G A + + R ELSF+ GD++ + + A W GE G G
Sbjct: 1 GSSGSSG-EGVVEAVACFAYTGRTAQELSFRRGDVLRL--HERASSDWWRGEHNGMRGLI 57
Query: 88 PESYVEPCDET 98
P Y+ T
Sbjct: 58 PHKYITLPAGT 68
Score = 58.1 bits (141), Expect = 1e-11
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
G+ A YT ++++LS RG ++ + ++ ++ WW GE G
Sbjct: 3 SGSSGEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEH-----NGMRGLI 57
Query: 271 PASYVKVM 278
P Y+ +
Sbjct: 58 PHKYITLP 65
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 73.7 bits (180), Expect = 4e-16
Identities = 27/125 (21%), Positives = 41/125 (32%), Gaps = 17/125 (13%)
Query: 45 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV------------ 92
Y R DE + +I + E G A ++ FP+
Sbjct: 49 YSLTVREADEGNAVCHYLIER--GEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTE 106
Query: 93 -EPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLF 149
+ + E + + + DL F Q E + + K DWW TGL
Sbjct: 107 ASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLV 166
Query: 150 PSNYV 154
P+NYV
Sbjct: 167 PANYV 171
Score = 53.3 bits (127), Expect = 6e-09
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 32 PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
++F +L F+ G+ + + + + + W A G TG P +Y
Sbjct: 112 AYKKPIIEVVVGTFKFTGERETDLPFEQGERLEI-LSKTNQDWWEARNALGTTGLVPANY 170
Query: 92 VE 93
V+
Sbjct: 171 VQ 172
Score = 52.5 bits (125), Expect = 1e-08
Identities = 27/168 (16%), Positives = 46/168 (27%), Gaps = 33/168 (19%)
Query: 130 VTKKENDWWTGTIGDRTGLF-------PSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKS 182
++++E G G F P Y + AV +
Sbjct: 19 MSREEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAV---------CHYLIER 69
Query: 183 EGVTRTSSVSGGSRSGTPDFSS-------------FTAAQAGTPKGKKPEIATVLAPYTA 229
+ + G + F A+ K E+ +T
Sbjct: 70 GEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTG 129
Query: 230 TSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
L +G+ + I KT WWE + G PA+YV++
Sbjct: 130 ERETDLPFEQGERLEILSKTNQDWWEA----RNALGTTGLVPANYVQI 173
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 70.3 bits (173), Expect = 4e-16
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYVVPYEAQT 161
EY A + ++ + DL F + +++ + K WW + + G+ P YV Y
Sbjct: 4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHHHH 63
Score = 66.5 bits (163), Expect = 1e-14
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
RA+++F + ++L F+ GDI+ + + E W A + G+ G P YVE
Sbjct: 4 EYVRALFDFNGNDEEDLPFKKGDILRI-RDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH 61
Score = 52.6 bits (127), Expect = 1e-09
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
E L + E L +G ++ IR K WW E ++GK G P YV+
Sbjct: 4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGK---RGMIPVPYVEKY 59
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding
protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A
1neb_A 3i35_A
Length = 64
Score = 69.9 bits (172), Expect = 5e-16
Identities = 22/64 (34%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYV 92
++ R YRA+Y++ +++ DE+SF+ GD I+ V+ + GW+ G ++ G+TG P +Y+
Sbjct: 3 MANLRTYRAMYDYSAQDEDEVSFRDGDYIVN-VQPI-DDGWMYGTVQRTGRTGMLPANYI 60
Query: 93 EPCD 96
E +
Sbjct: 61 EFVN 64
Score = 62.2 bits (152), Expect = 3e-13
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD--RTGLFPSNYV 154
Y A Y Y + + +++F + I + ++ W GT+ RTG+ P+NY+
Sbjct: 7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYI 60
Score = 53.4 bits (129), Expect = 5e-10
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 215 GKKPEIATVLA--PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
G + T A Y+A +++S G I+ + GW G +Q G + G PA
Sbjct: 1 GAMANLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTG---RTGMLPA 57
Query: 273 SYVKVM 278
+Y++ +
Sbjct: 58 NYIEFV 63
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 70.5 bits (173), Expect = 5e-16
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMV--PVKQNAEPGWLAGELRGQT 84
++ + + + Y A+Y F +RN +ELS + + W E+ G+
Sbjct: 2 SSGSSGSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKK 61
Query: 85 GWFPESYVEPCD 96
G+ P +Y+ +
Sbjct: 62 GYVPSNYIRKTE 73
Score = 68.6 bits (168), Expect = 2e-15
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-----ENDWWTGTIGDRTGLFPSNYVVPY 157
+ Y A Y + + P +L+ + ++ + + + +WW + + G PSNY+
Sbjct: 13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKT 72
Query: 158 EA 159
E+
Sbjct: 73 ES 74
Score = 50.8 bits (122), Expect = 8e-09
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 212 TPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMI----RKKTTTGWWEGELQAKGKKRQV 267
+ + ++ + + A + +LS+S Q + I T WW E+ +
Sbjct: 7 GSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVN-----GKK 61
Query: 268 GWFPASYVK 276
G+ P++Y++
Sbjct: 62 GYVPSNYIR 70
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 70.1 bits (172), Expect = 5e-16
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 39 RRYRAIYEFVSRNG-------DELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
+ A ++ +G L+ + GD++MV + G+ GEL G G P
Sbjct: 8 KIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMV-YGPMDDQGFYYGELGGHRGLVPAHL 66
Query: 92 VEPCDETG 99
++ G
Sbjct: 67 LDHMSLHG 74
Score = 60.5 bits (147), Expect = 2e-12
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 103 PEYYIAAYPYDSTEP-------GDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNY 153
+ IAA YD + G L +V+ V +D ++ G +G GL P++
Sbjct: 7 GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHL 66
Query: 154 V 154
+
Sbjct: 67 L 67
Score = 43.2 bits (102), Expect = 3e-06
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 13/74 (17%)
Query: 213 PKGKKPEIATVLAPY-------TATSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKK 264
G +I Y +L+L G ++M+ G++ GEL
Sbjct: 2 SSGSSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGH--- 58
Query: 265 RQVGWFPASYVKVM 278
G PA + M
Sbjct: 59 --RGLVPAHLLDHM 70
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 70.0 bits (172), Expect = 5e-16
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 34 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESY 91
G + +RAI+ FV R+ DEL + D ++V ++ AE W G G FP Y
Sbjct: 2 GEEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQ--AEDYWYEAYNMRTGARGVFPAYY 59
Query: 92 VEPCDETGE 100
+ E
Sbjct: 60 AIEVTKEPE 68
Score = 65.4 bits (160), Expect = 3e-14
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 99 GEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVV 155
GE + + A + + +L D+ + V + D W+ G+FP+ Y +
Sbjct: 2 GEEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 61
Query: 156 PYEAQTPAAA 165
+ A
Sbjct: 62 EVTKEPEHMA 71
Score = 53.8 bits (130), Expect = 4e-10
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 216 KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
+ + + + ++L L +++ + W+E G G FPA Y
Sbjct: 4 EHEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGA---RGVFPAYYA 60
Query: 276 KVM 278
+
Sbjct: 61 IEV 63
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 70.0 bits (172), Expect = 7e-16
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTIGDRTGLFPSNYV---VPYEA 159
A Y + P +L+F + +++ V ++ + WW ++ R G+ P N + V
Sbjct: 7 KALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYD 66
Query: 160 QTP 162
+ P
Sbjct: 67 KKP 69
Score = 67.7 bits (166), Expect = 4e-15
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNA-EPGWLAGELRGQTGWFPESYVEPCDETGE 100
+A+Y+ V+ + DELSF+ GDI+ V + GW L G+ G P + ++ +
Sbjct: 7 KALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYD 66
Query: 101 VVP 103
P
Sbjct: 67 KKP 69
Score = 53.5 bits (129), Expect = 7e-10
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTT---TGWWEGELQAKGKKRQVGWFPASYVK 276
+A L A S ++LS +G ++ + ++ T GWW L + G P + +K
Sbjct: 5 LAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGR-----QGIVPGNRLK 59
Query: 277 VMGG 280
++ G
Sbjct: 60 ILVG 63
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 70.2 bits (172), Expect = 7e-16
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQT 161
Y+ Y + +++F + V +K E+ WW G+ G PS+Y+V E +
Sbjct: 8 ATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQ 67
Query: 162 PAAAVDPTP 170
P + +
Sbjct: 68 PDPSGKESG 76
Score = 67.1 bits (164), Expect = 9e-15
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
+G S Y + E+SF G + V +++ E GW GW P Y+
Sbjct: 3 SGSSGATSYMTCSAYQKVQDSEISFPAGVEVQV-LEKQ-ESGWWYVRFGELEGWAPSHYL 60
Query: 93 EPCDE 97
+
Sbjct: 61 VLDEN 65
Score = 59.4 bits (144), Expect = 6e-12
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
G+ + Y ++S G + + +K +GWW GW
Sbjct: 1 GSSGSSGATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGEL-----EGWA 55
Query: 271 PASYVKVM 278
P+ Y+ +
Sbjct: 56 PSHYLVLD 63
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 69.6 bits (171), Expect = 8e-16
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPYE 158
E YIA + + + GDLTF + E++ V +K + WW GL P Y+ PY
Sbjct: 11 EEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS 67
Score = 69.2 bits (170), Expect = 9e-16
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 29 STDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP 88
++ S Y A+ +F ++ +L+F+ G+I++V +++ + W+A + +G G P
Sbjct: 1 GSESHKWSTGEEYIAVGDFTAQQVGDLTFKKGEILLV-IEKKPDGWWIAKDAKGNEGLVP 59
Query: 89 ESYVEPCDE 97
+Y+EP E
Sbjct: 60 RTYLEPYSE 68
Score = 53.0 bits (128), Expect = 1e-09
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
E + +TA L+ +G+++++ +K GWW AK K G P +Y++
Sbjct: 11 EEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWW----IAKDAKGNEGLVPRTYLE 64
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 69.2 bits (170), Expect = 1e-15
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI--GDRTGLFPSNYV 154
IA + ++ +++F + E I + ++ + +W+ G I R G+FP YV
Sbjct: 8 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 60
Score = 63.4 bits (155), Expect = 2e-13
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG--QTGWFPESYVEPCDE 97
A + F E+SF+ G+ I + + + W G + G + G FP +YV+
Sbjct: 8 EAIAKFNFNGDTQVEMSFRKGERIT--LLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR 65
Score = 60.3 bits (147), Expect = 2e-12
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 215 GKKPEIATVLA--PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
G P +A + + ++S +G+ I + ++ W+EG + + G FP
Sbjct: 1 GIDPFTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSR---QGIFPI 57
Query: 273 SYVKVM 278
+YV V+
Sbjct: 58 TYVDVI 63
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 69.3 bits (170), Expect = 1e-15
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWW--------TGTIGDRTGLFPSNYV 154
E +A Y Y P ++T + +++ + N DWW G +R G P+ YV
Sbjct: 2 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61
Query: 155 VPYE 158
+
Sbjct: 62 KKLD 65
Score = 56.2 bits (136), Expect = 5e-11
Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW--------LAGELRGQTGWFPESYV 92
A+Y++ ++ E++ + GDI+ + + W + G+ + G+ P +YV
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILT--LLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61
Query: 93 EPCD 96
+ D
Sbjct: 62 KKLD 65
Score = 52.0 bits (125), Expect = 2e-09
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKR---QVGWFPASYV 275
E+ L Y S ++++ +G ++ + T WW+ E++ + + G+ PA+YV
Sbjct: 2 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61
Query: 276 KVM 278
K +
Sbjct: 62 KKL 64
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 69.8 bits (171), Expect = 1e-15
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 19 NAPAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVK--QNAEPGWL 76
+ + W + D + RA Y+FV+ + +E+SF+ GD++ + +K Q GWL
Sbjct: 3 SGSSGTNWASGEDD-----HVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWL 57
Query: 77 AGELRGQ-TGWFPESYVE 93
L GQ TG P +YV+
Sbjct: 58 LASLDGQTTGLIPANYVK 75
Score = 58.3 bits (141), Expect = 2e-11
Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Query: 82 GQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-----D 136
G +G ++ D+ A Y + + +++F +++ + KE
Sbjct: 1 GSSGSSGTNWASGEDDHVVAR-----AEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRG 55
Query: 137 WWTGTI-GDRTGLFPSNYVVPYEAQTPAAAVDPTPAT 172
W ++ G TGL P+NYV + ++ P++
Sbjct: 56 WLLASLDGQTTGLIPANYVKILGKRRGRKTIESGPSS 92
Score = 53.6 bits (129), Expect = 1e-09
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKK----TTTGWWEGEL 258
SS ++ +A + A S E++S G ++ + K GW L
Sbjct: 2 SSGSSGTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASL 61
Query: 259 QAKGKKRQVGWFPASYVKVMG 279
+ G PA+YVK++G
Sbjct: 62 ----DGQTTGLIPANYVKILG 78
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 69.4 bits (170), Expect = 1e-15
Identities = 12/73 (16%), Positives = 18/73 (24%), Gaps = 2/73 (2%)
Query: 88 PESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDR 145
P + ++ Y S + F + E + V E WW R
Sbjct: 2 SSGSSGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLSTGR 61
Query: 146 TGLFPSNYVVPYE 158
P V
Sbjct: 62 ESYIPGICVARVS 74
Score = 54.0 bits (130), Expect = 5e-10
Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTG 85
+ + + ++ S + F+ G+ + V + W A L G+
Sbjct: 6 SGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRV-ISDEGG-WWKAISLSTGRES 63
Query: 86 WFPESYVEPCD 96
+ P V
Sbjct: 64 YIPGICVARVS 74
Score = 49.4 bits (118), Expect = 2e-08
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
SS ++ P+G + VL+ Y + RG+ + + GWW+ + G
Sbjct: 2 SSGSSGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTG 60
Query: 263 KKRQVGWFPASYVKVMGG 280
+ + P V + G
Sbjct: 61 ---RESYIPGICVARVSG 75
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 69.3 bits (170), Expect = 1e-15
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQTPAAA 165
PY + ++T + +++ + N DWW + DR G P+ YV ++ T
Sbjct: 4 PPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKEL 62
Query: 166 V 166
V
Sbjct: 63 V 63
Score = 63.9 bits (156), Expect = 1e-13
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV 101
+ + + E++ + GDI+ + N W E+ + G+ P +YV+ D
Sbjct: 4 PPLPPYSAGG-REVTMKKGDILTLLNSTN--KDWWKVEVNDRQGFVPAAYVKKLDS--GT 58
Query: 102 VPEYYIAAYPYDST 115
E +A Y Y
Sbjct: 59 GKELVLALYDYQEK 72
Score = 54.3 bits (131), Expect = 4e-10
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
A L PY+A E +++ +G ++ + T WW+ E+ + G+ PA+YVK +
Sbjct: 3 APPLPPYSAGGRE-VTMKKGDILTLLNSTNKDWWKVEVNDR-----QGFVPAAYVKKL 54
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 69.3 bits (170), Expect = 1e-15
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWF 87
+ D A+Y++ + DE+SF P DII ++ + GW G +G+ G F
Sbjct: 7 GTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITN-IEMI-DDGWWRGVCKGRYGLF 64
Query: 88 PESYVE 93
P +YVE
Sbjct: 65 PANYVE 70
Score = 65.8 bits (161), Expect = 3e-14
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 96 DETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
DE + +A Y Y + +++F+ D++I + + WW G R GLFP+NYV
Sbjct: 10 DEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 69
Score = 52.7 bits (127), Expect = 1e-09
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
SS ++ + A L Y A +++S +I + GWW G +
Sbjct: 2 SSGSSGTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--- 58
Query: 263 KKRQVGWFPASYVKVMGGG 281
+ G FPA+YV++ G
Sbjct: 59 --GRYGLFPANYVELRQSG 75
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 68.4 bits (168), Expect = 2e-15
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVE 93
S YRA+Y++ +N DEL + GD + V Q + GW G R + G FP +YV
Sbjct: 5 SSGTPYRAMYQYRPQNEDELELREGDRVD--VMQQCDDGWFVGVSRRTQKFGTFPGNYVA 62
Query: 94 P 94
P
Sbjct: 63 P 63
Score = 64.2 bits (157), Expect = 9e-14
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVVP 156
Y A Y Y +L + + + V ++ +D W+ G + G FP NYV P
Sbjct: 7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63
Score = 56.9 bits (138), Expect = 4e-11
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G + Y + ++L L G + + ++ GW+ G + K G FP +Y
Sbjct: 4 GSSGTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQK---FGTFPGNY 60
Query: 275 VKVMGG 280
V + G
Sbjct: 61 VAPVSG 66
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 68.4 bits (168), Expect = 2e-15
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVE 93
S + A++ + + +EL Q G+ I V + GWL G L G+TG FP YV
Sbjct: 5 SSGNMFVALHTYSAHRPEELDLQKGEGIR--VLGKYQDGWLKGLSLLTGRTGIFPSDYVI 62
Query: 94 PCDE 97
P
Sbjct: 63 PVSG 66
Score = 66.9 bits (164), Expect = 1e-14
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT--IGDRTGLFPSNYVVP 156
++A + Y + P +L + E I V K D W G + RTG+FPS+YV+P
Sbjct: 7 GNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIP 63
Score = 57.6 bits (140), Expect = 2e-11
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G + L Y+A E+L L +G+ I + K GW +G G+ G FP+ Y
Sbjct: 4 GSSGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGR---TGIFPSDY 60
Query: 275 VKVMGG 280
V + G
Sbjct: 61 VIPVSG 66
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 68.0 bits (167), Expect = 3e-15
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
A+Y++ + DE+SF P DII ++ + GW G +G+ G FP +YVE
Sbjct: 10 ITAIALYDYQAAGDDEISFDPDDIITN-IEMI-DDGWWRGVCKGRYGLFPANYVE 62
Score = 68.0 bits (167), Expect = 3e-15
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
IA Y Y + +++F+ D++I + + WW G R GLFP+NYV
Sbjct: 12 AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61
Score = 50.3 bits (121), Expect = 7e-09
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 213 PKGKKPEIATVLA--PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
P G T +A Y A +++S +I + GWW G K + G F
Sbjct: 2 PLGSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVC-----KGRYGLF 56
Query: 271 PASYVKV 277
PA+YV++
Sbjct: 57 PANYVEL 63
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 68.5 bits (168), Expect = 3e-15
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 31 DPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFP 88
+ + + F ++ DE++ Q D+++V + E GWL GE G+TGWFP
Sbjct: 10 GLSSKGDLPQVEITKAFFAKQADEVTLQQADVVLVLQQ---EDGWLYGERLRDGETGWFP 66
Query: 89 ESYVEP 94
E +
Sbjct: 67 EDFARF 72
Score = 60.8 bits (148), Expect = 2e-12
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYVVPYEAQTPA 163
+ + + ++T Q +V+ V ++E+ W G TG FP ++ +
Sbjct: 20 VEITKAFFAKQADEVTLQQADVVLVLQQEDGWLYGERLRDGETGWFPEDFARFISGPSSG 79
Score = 58.1 bits (141), Expect = 2e-11
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
S + Q + KG P+ + + A +++++L + ++++ ++ GW GE G
Sbjct: 3 SGSSGWQGLSSKGDLPQ-VEITKAFFAKQADEVTLQQADVVLVLQQED-GWLYGERLRDG 60
Query: 263 KKRQVGWFPASYVK 276
+ GWFP + +
Sbjct: 61 ET---GWFPEDFAR 71
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 67.7 bits (166), Expect = 4e-15
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGT--IGDRTGLFPSNYVVPYE 158
++A Y Y++ DL+F++ E + DWW TG PSNYV P +
Sbjct: 15 VTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 73
Score = 63.1 bits (154), Expect = 2e-13
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQT 84
T + G + + A+Y++ + D+LSF G+ + ++E W G+T
Sbjct: 4 TGTLRTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQ--ILNSSEGDWWEARSLTTGET 61
Query: 85 GWFPESYVEPCD 96
G+ P +YV P D
Sbjct: 62 GYIPSNYVAPVD 73
Score = 54.6 bits (132), Expect = 3e-10
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 208 AQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQV 267
T G + L Y A + + LS +G+ I + WWE G +
Sbjct: 5 GTLRTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTG---ET 61
Query: 268 GWFPASYVKVM 278
G+ P++YV +
Sbjct: 62 GYIPSNYVAPV 72
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 67.8 bits (166), Expect = 4e-15
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 100 EVVPEYYIAAYPYDS--TEPGDLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYVVP 156
+ A YPYD+ + +++F Q+E++ V+ E WW + TG+ PSNYV
Sbjct: 2 DNFIYKAKALYPYDADDDDAYEISFEQNEILQVSDIEGRWWKARRANGETGIIPSNYVQL 61
Query: 157 YEAQTPA 163
+
Sbjct: 62 IDGPEEM 68
Score = 59.7 bits (145), Expect = 3e-12
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 40 RYRAIYEFVSRNGD--ELSFQPGDIIMVPVKQNAEPG-WLAGELRGQTGWFPESYVEPCD 96
+ +A+Y + + + D E+SF+ +I+ V + E W A G+TG P +YV+ D
Sbjct: 7 KAKALYPYDADDDDAYEISFEQNEILQV---SDIEGRWWKARRANGETGIIPSNYVQLID 63
Query: 97 ETGEV 101
E+
Sbjct: 64 GPEEM 68
Score = 41.6 bits (98), Expect = 1e-05
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 218 PEIATVLAPYTATSSEQ--LSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
A L PY A + +S + +++ + WW+ +A G + G P++YV
Sbjct: 5 IYKAKALYPYDADDDDAYEISFEQNEILQVSDIEG-RWWKAR-RANG---ETGIIPSNYV 59
Query: 276 KVMGG 280
+++ G
Sbjct: 60 QLIDG 64
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 67.7 bits (166), Expect = 4e-15
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQ-TGWFPESYVEP 94
S R +A+Y++ ++ DEL+F G +I K+ GW G+ + +FP +YVE
Sbjct: 5 SSGRTVKALYDYKAKRSDELTFCRGALIHNVSKE--PGGWWKGDYGTRIQQYFPSNYVED 62
Query: 95 CDE 97
Sbjct: 63 ISG 65
Score = 64.6 bits (158), Expect = 6e-14
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDR-TGLFPSNYVVPYEAQ 160
A Y Y + +LTF + +I+ KE WW G G R FPSNYV
Sbjct: 7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISGP 66
Query: 161 T 161
+
Sbjct: 67 S 67
Score = 55.7 bits (135), Expect = 1e-10
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G L Y A S++L+ RG LI K GWW+G+ R +FP++Y
Sbjct: 4 GSSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDY----GTRIQQYFPSNY 59
Query: 275 VKVMGG 280
V+ + G
Sbjct: 60 VEDISG 65
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 67.6 bits (166), Expect = 4e-15
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI--GDRTGLFPSNYV 154
IA + ++ +++F + E I + ++ + +W+ G I R G+FP YV
Sbjct: 8 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61
Score = 63.0 bits (154), Expect = 2e-13
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG--QTGWFPESYVE 93
S A + F E+SF+ G+ I + + + W G + G + G FP +YV+
Sbjct: 5 SSGGEAIAKFNFNGDTQVEMSFRKGERIT--LLRQVDENWYEGRIPGTSRQGIFPITYVD 62
Query: 94 PCDE 97
Sbjct: 63 VISG 66
Score = 58.0 bits (141), Expect = 1e-11
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
G+ E A + + ++S +G+ I + ++ W+EG + + G F
Sbjct: 1 GSSGSSGGE-AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSR---QGIF 56
Query: 271 PASYVKVMGG 280
P +YV V+ G
Sbjct: 57 PITYVDVISG 66
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 68.2 bits (167), Expect = 4e-15
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTG--TIGDRTGLFPSNYVVPYE 158
++A Y Y++T DL+F++ E + + DWW TG PSNYV P +
Sbjct: 7 TLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64
Score = 61.6 bits (150), Expect = 9e-13
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVE 93
S + A+Y++ + +LSF G+ + + W G+TG+ P +YV
Sbjct: 4 SGVTLFVALYDYNATRWTDLSFHKGEKFQ--ILEFGPGDWWEARSLTTGETGYIPSNYVA 61
Query: 94 PCDE 97
P D
Sbjct: 62 PVDS 65
Score = 54.7 bits (132), Expect = 3e-10
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 214 KGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPAS 273
+G + L Y AT LS +G+ I + WWE G + G+ P++
Sbjct: 2 RGSGVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTG---ETGYIPSN 58
Query: 274 YVKVM 278
YV +
Sbjct: 59 YVAPV 63
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 67.8 bits (166), Expect = 5e-15
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGT--IGDRTGLFPSNYVVPYE 158
+ + A Y Y++ DL+F++ E + DWW TG PS Y+ P +
Sbjct: 4 ISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVD 63
Score = 61.6 bits (150), Expect = 9e-13
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYV 92
V + A+Y++ +R D+LSF G+ + ++E W G+TG+ P Y+
Sbjct: 2 VQISTLFEALYDYEARTEDDLSFHKGEKFQ--ILNSSEGDWWEARSLTTGETGYIPSIYL 59
Query: 93 EPCDE 97
P D
Sbjct: 60 APVDR 64
Score = 54.3 bits (131), Expect = 4e-10
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 216 KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
+ + L Y A + + LS +G+ I + WWE G + G+ P+ Y+
Sbjct: 3 QISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTG---ETGYIPSIYL 59
Query: 276 KVM 278
+
Sbjct: 60 APV 62
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 67.3 bits (165), Expect = 5e-15
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 42 RAIYEFV--SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 98
+AI + V + + L+ + GDI+ V + N G GE+ G+ G FP ++V+ D
Sbjct: 5 KAIQKRVPCAYDKTALALEVGDIVKV-TRMN-INGQWEGEVNGRKGLFPFTHVKIFDPQ 61
Score = 65.0 bits (159), Expect = 4e-14
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 218 PEIATVLAPYT--ATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
P A + A L+L G ++ + + G WEGE+ + G FP ++V
Sbjct: 1 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGR-----KGLFPFTHV 55
Query: 276 KVM 278
K+
Sbjct: 56 KIF 58
Score = 63.5 bits (155), Expect = 1e-13
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQTP 162
I + + L +++ VT+ N W G + R GLFP +V ++ Q P
Sbjct: 7 IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNP 63
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 68.2 bits (167), Expect = 5e-15
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD--RTGLFPSNYVVPYEAQTPA 163
+A Y + +L+F + E I + +K N +W+ G I R G+FP++YV
Sbjct: 21 VAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPRLR 80
Query: 164 AAVDPTPAT 172
D P++
Sbjct: 81 LCDDSGPSS 89
Score = 62.1 bits (151), Expect = 9e-13
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 32 PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPE 89
V EY A Y F ELSF+ G+ I + K N W G + G+ G FP
Sbjct: 11 TYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVN--ENWYEGRITGTGRQGIFPA 68
Query: 90 SYVEPCDETGEVVPE 104
SYV+ E + +
Sbjct: 69 SYVQVSREPRLRLCD 83
Score = 60.1 bits (146), Expect = 4e-12
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
SS ++ + T + + A + +LS +G+ I + +K W+EG + G
Sbjct: 2 SSGSSGKPPTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTG 61
Query: 263 KKRQVGWFPASYVKVM 278
+ G FPASYV+V
Sbjct: 62 ---RQGIFPASYVQVS 74
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 67.3 bits (165), Expect = 6e-15
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYVVPYE 158
+ +A Y Y DL + + ++ ++ N WW + + G PSNYV E
Sbjct: 9 KKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65
Score = 61.1 bits (149), Expect = 9e-13
Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 32 PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPES 90
SE ++ A+Y+++ N ++L + GD + + + W + GQ G+ P +
Sbjct: 2 SMSTSELKKVVALYDYMPMNANDLQLRKGDEYF--ILEESNLPWWRARDKNGQEGYIPSN 59
Query: 91 YVEPCDET 98
YV +++
Sbjct: 60 YVTEAEDS 67
Score = 52.2 bits (126), Expect = 2e-09
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
G+ + + L Y ++ L L +G I +++ WW K Q G+
Sbjct: 1 GSMSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD----KNGQEGYI 56
Query: 271 PASYVK 276
P++YV
Sbjct: 57 PSNYVT 62
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 67.4 bits (165), Expect = 6e-15
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW------TGTIGDRTGLFPSNYVVPY 157
Y+ + + S +L+F +V +V +KE WW G P NY+
Sbjct: 11 PKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAER 70
Query: 158 E 158
E
Sbjct: 71 E 71
Score = 57.8 bits (140), Expect = 2e-11
Identities = 13/67 (19%), Positives = 24/67 (35%)
Query: 210 AGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGW 269
+ L + + + E+LS G + + +K WW L G G+
Sbjct: 2 VSRDQAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGY 61
Query: 270 FPASYVK 276
P +Y+
Sbjct: 62 VPHNYLA 68
Score = 57.4 bits (139), Expect = 2e-11
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-----RG 82
S D + Y +++F SR +ELSF+ GD+ V + E W A L
Sbjct: 2 VSRDQAHLGPK--YVGLWDFKSRTDEELSFRAGDVFH--VARKEEQWWWATLLDEAGGAV 57
Query: 83 QTGWFPESYVEPCD 96
G+ P +Y+ +
Sbjct: 58 AQGYVPHNYLAERE 71
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN
structural genomics consortium, SGC; 2.00A {Homo
sapiens}
Length = 89
Score = 67.6 bits (165), Expect = 7e-15
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 8 VANSWGDNAWDNAPAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMV-- 65
+ + ++ + + + S T + A++++ + +EL+ + GD + V
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMGTTPAGPV--WTAVFDYEAAGDEELTLRRGDRVQVLS 58
Query: 66 -PVKQNAEPGWLAGEL-RGQTGWFPESYVEP 94
+ + GW G+L G+ G FP +YV P
Sbjct: 59 QDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP 89
Score = 65.6 bits (160), Expect = 4e-14
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 81 RGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK------E 134
+ + A + Y++ +LT + + + V + +
Sbjct: 7 HSSGVDLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGD 66
Query: 135 NDWWTGTIGD-RTGLFPSNYVVP 156
WWTG + R G+FPSNYV P
Sbjct: 67 EGWWTGQLPSGRVGVFPSNYVAP 89
Score = 54.8 bits (132), Expect = 3e-10
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 192 SGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT 251
S D + + T + Y A E+L+L RG + + +
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCA 62
Query: 252 -----GWWEGELQAKGKKRQVGWFPASYV 275
GWW G+L +VG FP++YV
Sbjct: 63 VSGDEGWWTGQL----PSGRVGVFPSNYV 87
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 67.0 bits (164), Expect = 9e-15
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPYEAQT 161
+A Y Y + +LT ++ ++I V K DWW G+IG + G FP+N+V
Sbjct: 7 PTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETLYQ 66
Query: 162 P 162
Sbjct: 67 E 67
Score = 65.1 bits (159), Expect = 4e-14
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVE 93
V A+Y++ + DEL+ GDII V K W G + +GQ G+FP ++V
Sbjct: 3 VDTAPTVVALYDYTANRSDELTIHRGDIIRVFFKD--NEDWWYGSIGKGQEGYFPANHVA 60
Query: 94 PCDETGEV 101
E+
Sbjct: 61 SETLYQEL 68
Score = 53.9 bits (130), Expect = 5e-10
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 218 PEIATVLA--PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
TV+A YTA S++L++ RG +I + K WW G + K Q G+FPA++V
Sbjct: 4 DTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIG----KGQEGYFPANHV 59
Query: 276 K 276
Sbjct: 60 A 60
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR
{Homo sapiens}
Length = 88
Score = 67.5 bits (165), Expect = 9e-15
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 20 APAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE 79
+ + P + + + + L+ + GDI+ V + N G GE
Sbjct: 4 GSSGPLPSTQNGPV----FAKAIQKRVPCAYDKTALALEVGDIVKV-TRMN-INGQWEGE 57
Query: 80 LRGQTGWFPESYVEPCDE 97
+ G+ G FP ++V+ D
Sbjct: 58 VNGRKGLFPFTHVKIFDP 75
Score = 62.9 bits (153), Expect = 4e-13
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQTPA 163
I + + L +++ VT+ N W G + R GLFP +V ++ Q P
Sbjct: 22 IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNPD 79
Score = 62.1 bits (151), Expect = 7e-13
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYT--ATSSEQLSLSRGQLIMIRKKTTTGWWEGELQA 260
S ++ P A + A L+L G ++ + + G WEGE+
Sbjct: 1 GSSGSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNG 60
Query: 261 KGKKRQVGWFPASYVKVM 278
+ G FP ++VK+
Sbjct: 61 R-----KGLFPFTHVKIF 73
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 66.6 bits (163), Expect = 1e-14
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG-WFPESYVEPCDETGE 100
+A++++ ++ DEL+F II KQ E GW G+ G+ WFP +YVE
Sbjct: 10 KALFDYKAQREDELTFIKSAIIQNVEKQ--EGGWWRGDYGGKKQLWFPSNYVEEMVNPEG 67
Query: 101 VVPE 104
+ +
Sbjct: 68 IHRD 71
Score = 65.0 bits (159), Expect = 4e-14
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGL-FPSNYVVPYEA 159
A + Y + +LTF + +I +K+ WW G G + L FPSNYV
Sbjct: 5 FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN 64
Query: 160 QTPAA 164
Sbjct: 65 PEGIH 69
Score = 54.6 bits (132), Expect = 3e-10
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
G+P K L Y A ++L+ + +I +K GWW G+ ++ WF
Sbjct: 1 GSPTFK--CAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY----GGKKQLWF 54
Query: 271 PASYVKVM 278
P++YV+ M
Sbjct: 55 PSNYVEEM 62
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 66.2 bits (162), Expect = 1e-14
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 37 EYRRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVE 93
+ ++ A Y+F S + EL + GDI+ + ++ GW +L + GW P +Y+
Sbjct: 1 KDPKFEAAYDFPGSGSSSELPLKKGDIVFI--SRDEPSGWSLAKLLDGSKEGWVPTAYMT 58
Query: 94 PCDETGEVVP 103
P +T VP
Sbjct: 59 PYKDTRNTVP 68
Score = 62.3 bits (152), Expect = 4e-13
Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 106 YIAAYPYD-STEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPYEAQT 161
+ AAY + S +L + +++++++ + W + G + G P+ Y+ PY+
Sbjct: 5 FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTR 64
Query: 162 PAAAV 166
V
Sbjct: 65 NTVPV 69
Score = 54.6 bits (132), Expect = 3e-10
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 217 KPEIATVLAPYTATSSE-QLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
K + + S +L L +G ++ I + +GW +L K+ GW P +Y+
Sbjct: 1 KDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKE---GWVPTAYM 57
Query: 276 K 276
Sbjct: 58 T 58
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 66.1 bits (162), Expect = 1e-14
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGL-FPSNYV 154
A + Y + +LTF + +I +K++ WW G G + L FPSNYV
Sbjct: 4 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 56
Score = 64.9 bits (159), Expect = 3e-14
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG-WFPESYVEP 94
+A++++ ++ DEL+F II KQ + GW G+ G+ WFP +YVE
Sbjct: 7 KALFDYKAQREDELTFTKSAIIQNVEKQ--DGGWWRGDYGGKKQLWFPSNYVEE 58
Score = 52.6 bits (127), Expect = 9e-10
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
L Y A ++L+ ++ +I +K GWW G+ ++ WFP++YV+ M
Sbjct: 6 VKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDY----GGKKQLWFPSNYVEEM 59
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 72.5 bits (176), Expect = 1e-14
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEP 94
R RA+Y++ + DELSF+ GD + ++ E GW G L GQ G +P +YVE
Sbjct: 428 EVRVRALYDYEGQEHDELSFKAGDELTK-MEDEDEQGWCKGRLDNGQVGLYPANYVEA 484
Score = 68.7 bits (166), Expect = 3e-13
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 3/100 (3%)
Query: 58 QPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEP 117
+ + + D+ A Y Y+ E
Sbjct: 383 KNVSSYEKTQSYPTDWSDDESNNPFSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEH 442
Query: 118 GDLTFNQDEVIYVTKK--ENDWWTGTIGD-RTGLFPSNYV 154
+L+F + + + E W G + + + GL+P+NYV
Sbjct: 443 DELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYV 482
Score = 54.4 bits (129), Expect = 2e-08
Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 6/198 (3%)
Query: 82 GQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGT 141
G +P+ D + A + + T +Q + N
Sbjct: 293 GMAMNWPQFEEWSADLNRTLSRREKKKATDGVTLTGINQTGDQSLPSKPSSTLNVPSNPA 352
Query: 142 IGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPD 201
++ + + + + + D T A V T T S + + D
Sbjct: 353 QSAQSQSSYNPFEDEDDTGSTVSEKDDTKAKNVSSYEKT-QSYPTDWSDDESNNPFSSTD 411
Query: 202 FSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIM-IRKKTTTGWWEGELQA 260
+ + L Y ++LS G + + + GW +G L
Sbjct: 412 ANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRL-- 469
Query: 261 KGKKRQVGWFPASYVKVM 278
QVG +PA+YV+ +
Sbjct: 470 --DNGQVGLYPANYVEAI 485
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like
protein; SH3, EPS8, EPS8L2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 66.1 bits (162), Expect = 2e-14
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
S + + +Y+F +RN +ELS +++ V ++ W GQ G+ P + +
Sbjct: 5 SSGKYVKILYDFTARNANELSVLKDEVLE--VLEDGRQWWKLRSRSGQAGYVPCNILGE 61
Score = 63.8 bits (156), Expect = 1e-13
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGLFPSNYVVPY 157
+Y Y + + +L+ +DEV+ V + WW + + G P N +
Sbjct: 8 KYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEA 62
Score = 46.9 bits (112), Expect = 1e-07
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G + +L +TA ++ +LS+ + +++ + + W + Q G+ P +
Sbjct: 4 GSSGKYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRS-----RSGQAGYVPCNI 58
Query: 275 VKVMGG 280
+ G
Sbjct: 59 LGEASG 64
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 66.3 bits (162), Expect = 2e-14
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 29 STDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP 88
S+ +G R + + D L + GDII + + + G G L + G F
Sbjct: 2 SSGSSGFCGRARVHTDFTPSPYDTDSLKLKKGDIIDI-ISKP-PMGTWMGLLNNKVGTFK 59
Query: 89 ESYVEPCDE 97
YV+
Sbjct: 60 FIYVDVLSS 68
Score = 63.6 bits (155), Expect = 1e-13
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQTPAA 164
+ + L + ++I + K W G + ++ G F YV + +
Sbjct: 15 HTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGPSSG 73
Score = 55.9 bits (135), Expect = 8e-11
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 213 PKGKKPEIATVLA--PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
A V + ++ L L +G +I I K G W G L K VG F
Sbjct: 4 GSSGFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNK-----VGTF 58
Query: 271 PASYVKVMGGG 281
YV V+ G
Sbjct: 59 KFIYVDVLSSG 69
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 65.7 bits (161), Expect = 2e-14
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD--RTGLFPSNYV 154
+ A Y YD+ E +LTF +++ I + + DWW G + GLFPSNYV
Sbjct: 2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
Score = 61.8 bits (151), Expect = 4e-13
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCD 96
A Y++ + +EL+F D I+ + + W GEL G G FP +YV +
Sbjct: 4 TAEYDYDAAEDNELTFVENDKIINI--EFVDDDWWLGELEKDGSKGLFPSNYVSLGN 58
Score = 56.8 bits (138), Expect = 3e-11
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
AT Y A +L+ I+ + WW GEL+ G G FP++YV +
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDG---SKGLFPSNYVSLG 57
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 66.2 bits (162), Expect = 2e-14
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 99 GEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGD-RTGLFPSNYV 154
G V YP+ S +L F + E + V +K + +WW + GL P NYV
Sbjct: 2 GSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 61
Query: 155 VPYE 158
V
Sbjct: 62 VVLS 65
Score = 62.3 bits (152), Expect = 4e-13
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVEPCDE 97
+ +Y F S +EL+F+ G+ + V K +P W + RGQ G P++YV +
Sbjct: 7 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD 66
Query: 98 T 98
Sbjct: 67 G 67
Score = 50.7 bits (122), Expect = 6e-09
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQVGWFPASYVK 276
+ L P+++ + E+L+ +G+ + + +K WW+ + + QVG P +YV
Sbjct: 7 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKN----ARGQVGLVPKNYVV 62
Query: 277 VM 278
V+
Sbjct: 63 VL 64
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3,
signaling protein; NMR {Homo sapiens}
Length = 67
Score = 65.8 bits (161), Expect = 2e-14
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 42 RAIYEFVS--RNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
R I + V + L+ + G+++ V K N G GE G+ G FP ++V D+
Sbjct: 10 RVIQKRVPNAYDKTALALEVGELVKV-TKIN-VSGQWEGECNGKRGHFPFTHVRLLDQ 65
Score = 62.3 bits (152), Expect = 3e-13
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 103 PEYYIAAYPYDST--EPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
P Y + L E++ VTK + W G + G FP +V
Sbjct: 6 PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHV 60
Score = 60.4 bits (147), Expect = 2e-12
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 218 PEIATVLAPYTATSSE--QLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
P A V+ + + L+L G+L+ + K +G WEGE K G FP ++V
Sbjct: 6 PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGK-----RGHFPFTHV 60
Query: 276 KVM 278
+++
Sbjct: 61 RLL 63
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 65.7 bits (161), Expect = 2e-14
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYVVPYE 158
E +A Y + +TE DL + + + +K + WW G PSNYV +
Sbjct: 3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59
Score = 57.6 bits (140), Expect = 2e-11
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 98
A+Y+F + +L + G ++ +++N W A + G G+ P +YV
Sbjct: 3 EIVVAMYDFQATEAHDLRLERGQEYII-LEKNDLHWWRARDKYGSEGYIPSNYVTGKKSN 61
Score = 48.8 bits (117), Expect = 3e-08
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
EI + + AT + L L RGQ +I +K WW K G+ P++YV
Sbjct: 3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD----KYGSEGYIPSNYVT 56
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 65.7 bits (161), Expect = 2e-14
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRTGLFPSNYVVPYE 158
IA + Y + + +L ++E +++ WW +RTG PSNYV
Sbjct: 5 VIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKL 60
Score = 55.3 bits (134), Expect = 1e-10
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
+E A +++ ++ EL + + + + +++ W +TG+ P +YVE
Sbjct: 2 TEEVIVIAKWDYTAQQDQELDIKKNERLW--LLDDSKTWWRVRNAANRTGYVPSNYVERK 59
Query: 96 DET 98
E
Sbjct: 60 LEH 62
Score = 43.0 bits (102), Expect = 3e-06
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
+ I YTA ++L + + + + + + WW + + + G+ P++YV+
Sbjct: 3 EEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSK-TWW----RVRNAANRTGYVPSNYVE 57
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 65.4 bits (160), Expect = 2e-14
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 116 EPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQTPAAAV 166
P ++T + +++ + N DWW + DR G P+ YV ++ T V
Sbjct: 2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELV 53
Score = 63.1 bits (154), Expect = 2e-13
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 53 DELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPY 112
E++ + GDI+ + N W E+ + G+ P +YV+ D E +A Y Y
Sbjct: 4 REVTMKKGDILTLLNSTN--KDWWKVEVNDRQGFVPAAYVKKLDS--GTGKELVLALYDY 59
Query: 113 DST 115
Sbjct: 60 QEK 62
Score = 50.0 bits (120), Expect = 9e-09
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 233 EQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
++++ +G ++ + T WW+ E+ + G+ PA+YVK +
Sbjct: 4 REVTMKKGDILTLLNSTNKDWWKVEVNDR-----QGFVPAAYVKKL 44
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 66.0 bits (161), Expect = 4e-14
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 96 DETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGD-RTGLFPS 151
+ G V YP+ S +L F + E + V +K + +WW + GL P
Sbjct: 10 NGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPK 69
Query: 152 NYVVPYEAQTPAAAVDPTPA 171
NYVV P+
Sbjct: 70 NYVVVLSDGPALHPAHSGPS 89
Score = 64.8 bits (158), Expect = 9e-14
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTG 85
+ ++ G + +Y F S +EL+F+ G+ + V K +P W + RGQ G
Sbjct: 6 SGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVG 65
Query: 86 WFPESYVEPCDETGEVVPEY 105
P++YV + + P +
Sbjct: 66 LVPKNYVVVLSDGPALHPAH 85
Score = 50.6 bits (121), Expect = 1e-08
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQA 260
SS ++ + + + L P+++ + E+L+ +G+ + + +K WW +
Sbjct: 2 SSGSSGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWW----KC 57
Query: 261 KGKKRQVGWFPASYVKVM 278
K + QVG P +YV V+
Sbjct: 58 KNARGQVGLVPKNYVVVL 75
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 65.0 bits (159), Expect = 5e-14
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYVVPYEA 159
IA Y + T DL F + +V+ + D W+ R G+ P+NYV E
Sbjct: 12 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG 70
Score = 61.1 bits (149), Expect = 1e-12
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 29 STDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWF 87
S A Y F +L F GD++ + V +P W + + G+ G
Sbjct: 2 SAIQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTI-VAVTKDPNWYKAKNKVGREGII 60
Query: 88 PESYVEPCD 96
P +YV+ +
Sbjct: 61 PANYVQKRE 69
Score = 46.9 bits (112), Expect = 2e-07
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 206 TAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT-TGWWEGELQAKGKK 264
+A QA P G + + T+ + L +G ++ I T W++ + K
Sbjct: 2 SAIQASWPSGTE---CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN----KV 54
Query: 265 RQVGWFPASYVK 276
+ G PA+YV+
Sbjct: 55 GREGIIPANYVQ 66
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3
domain, peptide complex, alternative splicing, disease
mutation, HOST-virus interaction, phosphoprotein,
polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A
1pnj_A 2pni_A 1pks_A 1pkt_A
Length = 83
Score = 65.1 bits (158), Expect = 5e-14
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVP-------------VKQNAEPGWLAG--EL 80
+E +YRA+Y++ +++ GDI+ V + E GWL G E
Sbjct: 3 AEGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNET 62
Query: 81 RGQTGWFPESYVEP 94
G+ G FP +YVE
Sbjct: 63 TGERGDFPGTYVEY 76
Score = 40.8 bits (95), Expect = 3e-05
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 18/76 (23%)
Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTT---------------GWWEGELQAKGKKRQVG 268
L Y E + L G ++ + K + GW G + G++ G
Sbjct: 11 LYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER---G 67
Query: 269 WFPASYVKVMGGGGIS 284
FP +YV+ +G IS
Sbjct: 68 DFPGTYVEYIGRKKIS 83
Score = 37.0 bits (85), Expect = 7e-04
Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 18/67 (26%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----------------WWTGTI--GDRTG 147
Y A Y Y D+ + +++ V K W G G
Sbjct: 8 YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERG 67
Query: 148 LFPSNYV 154
FP YV
Sbjct: 68 DFPGTYV 74
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 64.6 bits (158), Expect = 5e-14
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYVVPYEA 159
++ + Y + + +L+ Q +V+ V WW + G P N + PY A
Sbjct: 9 KWVLCNYDFQARNSSELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYVPYNILTPYPA 65
Score = 60.0 bits (146), Expect = 3e-12
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 32 PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
P G + Y+F +RN ELS + D++ V ++ W + GQ G+ P +
Sbjct: 2 PLGSGALKWVLCNYDFQARNSSELSVKQRDVLE--VLDDSRKWWKVRDPAGQEGYVPYNI 59
Query: 92 VEPCD 96
+ P
Sbjct: 60 LTPYP 64
Score = 42.7 bits (101), Expect = 5e-06
Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
G + + A +S +LS+ + ++ + + WW + + Q G+
Sbjct: 1 GPLGSGALKWVLCNYDFQARNSSELSVKQRDVLEVLDD-SRKWW----KVRDPAGQEGYV 55
Query: 271 PASYVKVMGGG 281
P + +
Sbjct: 56 PYNILTPYPAA 66
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 64.1 bits (157), Expect = 7e-14
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLA--GELRGQTGWFPESYVE 93
+ +Y +V ++ DE++ PGD I + V ++ GW + G+TG P +Y+
Sbjct: 3 ENKVLYAYVQKDDDEITITPGDKISL-VARDTGSGWTKINNDTTGETGLVPTTYIR 57
Score = 52.2 bits (126), Expect = 2e-09
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWT---GTIGDRTGLFPSNYV 154
Y Y + ++T + I + ++ WT TGL P+ Y+
Sbjct: 6 VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 56
Score = 48.3 bits (116), Expect = 4e-08
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLI-MIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
VL Y ++++++ G I ++ + T +GW + G + G P +Y+++
Sbjct: 4 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTG---ETGLVPTTYIRI 58
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 64.2 bits (157), Expect = 8e-14
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 39 RRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPC 95
RR RAI + + DE+SF GD+ +V E GW+ + G E VE
Sbjct: 8 RRVRAILPYTKVPDTDEISFLKGDMFIV--HNELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
Query: 96 DE 97
Sbjct: 66 SG 67
Score = 52.7 bits (127), Expect = 1e-09
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 106 YIAAYPYDSTEPGD-LTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYVVPYE 158
A PY D ++F + ++ V + E+ W T D GL + V
Sbjct: 10 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVS 66
Score = 47.3 bits (113), Expect = 9e-08
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 223 VLAPYTATSSE-QLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG 280
+ PYT ++S +G + ++ + GW ++ G V+ + G
Sbjct: 12 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQ---GLIVEDLVEEVSG 67
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain,
SH2 domain, SRC homology 3, RAS signaling pathway,
proto- oncogene, phosphorylation; 1.5A {Homo sapiens}
PDB: 2j06_A
Length = 65
Score = 63.6 bits (155), Expect = 1e-13
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 39 RRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPC 95
RR RAI + + DE+SF GD+ + V E GW+ + G E VE
Sbjct: 6 RRVRAILPYTKVPDTDEISFLKGDMFI--VHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 63
Score = 55.1 bits (133), Expect = 2e-10
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 99 GEVVPEYYIAAYPYDSTEPGD-LTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYV 154
G + A PY D ++F + ++ V + E+ W T D GL + V
Sbjct: 1 GSHMRRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLV 60
Query: 155 VP 156
Sbjct: 61 EE 62
Score = 48.2 bits (115), Expect = 4e-08
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 218 PEIATVLAPYTATS-SEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
+ PYT ++++S +G + ++ + GW + G V+
Sbjct: 5 RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTD---EQGLIVEDLVE 61
Query: 277 VMG 279
+G
Sbjct: 62 EVG 64
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 63.6 bits (155), Expect = 1e-13
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 83 QTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGT 141
+ G+ P +YV+ D E +A Y Y P ++T + +++ + N DWW
Sbjct: 3 RQGFVPAAYVKKLDSGTGK--ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE 60
Query: 142 I 142
+
Sbjct: 61 V 61
Score = 44.3 bits (105), Expect = 1e-06
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 32 PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL 80
+ A+Y++ ++ E++ + GDI+ + + W E+
Sbjct: 15 LDSGTGKELVLALYDYQEKSPREVTMKKGDILT--LLNSTNKDWWKVEV 61
Score = 43.9 bits (104), Expect = 1e-06
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 212 TPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGEL 258
G E+ L Y S ++++ +G ++ + T WW+ E+
Sbjct: 15 LDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61
Score = 24.7 bits (54), Expect = 9.6
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 144 DRTGLFPSNYVVPYEAQTPAAAV 166
DR G P+ YV ++ T V
Sbjct: 2 DRQGFVPAAYVKKLDSGTGKELV 24
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein
3, protein-protein interaction, structural genomics;
NMR {Homo sapiens}
Length = 68
Score = 63.4 bits (155), Expect = 1e-13
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
S + + +YEF +RN EL+ G+ + V +++ WL G++G+ P + +EP
Sbjct: 5 SSGLKMQVLYEFEARNPRELTVVQGEKLE--VLDHSKRWWLVKNEAGRSGYIPSNILEPL 62
Query: 96 D 96
Sbjct: 63 S 63
Score = 61.5 bits (150), Expect = 8e-13
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGLFPSNYVVPYEAQTP 162
Y +++ P +LT Q E + V WW R+G PSN + P +
Sbjct: 8 LKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLSGPSS 67
Query: 163 A 163
Sbjct: 68 G 68
Score = 44.5 bits (106), Expect = 9e-07
Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
G VL + A + +L++ +G+ + + + W K + + G+ P++
Sbjct: 4 GSSGLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWL-----VKNEAGRSGYIPSNI 58
Query: 275 VKVMGG 280
++ + G
Sbjct: 59 LEPLSG 64
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 63.4 bits (155), Expect = 1e-13
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 106 YIAAYPYD-STEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVVPY 157
+ AAY + S P +L + +VIY+T++E W G + G + G P+ Y+ P+
Sbjct: 3 FEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKPH 58
Score = 61.5 bits (150), Expect = 7e-13
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 40 RYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 94
+ A Y+F S + EL + GD+I + + GW G+L + GW P +Y++P
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYI--TREEPSGWSLGKLLDGSKEGWVPTAYMKP 57
Score = 56.8 bits (138), Expect = 3e-11
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 221 ATVLAPYTATSSE-QLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
+ + S +L L +G +I I ++ +GW G+L K+ GW P +Y+K
Sbjct: 3 FEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKE---GWVPTAYMK 56
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton,
phosphorylation, SH3 domain, DNA damage, DNA repair,
nucleus; NMR {Saccharomyces cerevisiae}
Length = 71
Score = 63.4 bits (155), Expect = 2e-13
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCD 96
+R Y+F++ + DEL+ + GD + + + W +L G++G P ++EP
Sbjct: 7 KRGIVQYDFMAESQDELTIKSGDKVYI-LDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVR 65
Query: 97 E 97
+
Sbjct: 66 D 66
Score = 60.0 bits (146), Expect = 3e-12
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVT--KKENDWWTGTIGD--RTGLFPSNYVVPYE 158
+ I Y + + +LT + +Y+ KK DWW + D ++GL P+ ++ P
Sbjct: 6 KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVR 65
Score = 52.6 bits (127), Expect = 2e-09
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWFPAS 273
K + V + A S ++L++ G + I K + WW +L GK G PA
Sbjct: 3 SKSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKS---GLVPAQ 59
Query: 274 YVKVM 278
+++ +
Sbjct: 60 FIEPV 64
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 77
Score = 63.1 bits (154), Expect = 2e-13
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 28 ASTDPTGVSEYRRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTG 85
S+ +G++ + R +Y+F +EL+ G+II V N GWL G+ +G+ G
Sbjct: 1 GSSGSSGMA--TKARVMYDFAAEPGNNELTVTEGEIITV-TNPNVGGGWLEGKNNKGEQG 57
Query: 86 WFPESYVEPCDETG 99
P YVE G
Sbjct: 58 LVPTDYVEILPNDG 71
Score = 51.9 bits (125), Expect = 3e-09
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 108 AAYPYD-STEPGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYV--VPYEAQT 161
Y + +LT + E+I VT W G GL P++YV +P + +
Sbjct: 14 VMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDGKD 73
Query: 162 PAA 164
P +
Sbjct: 74 PFS 76
Score = 45.0 bits (107), Expect = 8e-07
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 210 AGTPKGKKPEIATVLAPYTATSSEQ-LSLSRGQLIM-IRKKTTTGWWEGELQAKGKKRQV 267
+ A V+ + A L+++ G++I GW EG+ K +
Sbjct: 1 GSSGSSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNN----KGEQ 56
Query: 268 GWFPASYVKVMGGGG 282
G P YV+++ G
Sbjct: 57 GLVPTDYVEILPNDG 71
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 62.5 bits (152), Expect = 3e-13
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
+ +V+ DELS G + V + GW G GQ GWFP +YV
Sbjct: 4 AFVXFAYVAEREDELSLVXGSRVTV--MEXCSDGWWRGSYNGQIGWFPSNYVLE 55
Score = 59.1 bits (143), Expect = 4e-12
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
+ Y + +L+ + V + +D WW G+ + G FPSNYV
Sbjct: 4 AFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYV 53
Score = 47.5 bits (113), Expect = 6e-08
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
A V Y A ++LSL G + + + + GWW G + +GWFP++YV
Sbjct: 4 AFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQ-----IGWFPSNYVLEE 56
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 62.2 bits (152), Expect = 3e-13
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEP 94
R Y+F++ + DEL+ + GD + + + W +L G++G P ++EP
Sbjct: 3 ERGIVQYDFMAESQDELTIKSGDKVYI-LDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59
Score = 61.8 bits (151), Expect = 4e-13
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVT--KKENDWWTGTIGD--RTGLFPSNYVVP 156
E I Y + + +LT + +Y+ KK DWW + D ++GL P+ ++ P
Sbjct: 3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59
Score = 52.5 bits (127), Expect = 1e-09
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
E V + A S ++L++ G + I K + WW +L GK G PA +++
Sbjct: 3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKS---GLVPAQFIEP 59
Query: 278 M 278
+
Sbjct: 60 V 60
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 62.9 bits (153), Expect = 3e-13
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 116 EPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPV 174
P ++T + +++ + N DWW + DR G P+ YV ++ T V
Sbjct: 4 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQE 63
Query: 175 VKDTP 179
D
Sbjct: 64 SGDNA 68
Score = 57.2 bits (138), Expect = 3e-11
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 50 RNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
E++ + GDI+ + + W E+ + G+ P +YV+ D
Sbjct: 3 MGPREVTMKKGDILTL--LNSTNKDWWKVEVNDRQGFVPAAYVKKLDS 48
Score = 49.1 bits (117), Expect = 3e-08
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 229 ATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
A ++++ +G ++ + T WW+ E+ + G+ PA+YVK +
Sbjct: 2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDR-----QGFVPAAYVKKL 46
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 62.4 bits (152), Expect = 5e-13
Identities = 15/73 (20%), Positives = 33/73 (45%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
++ + T + + +Y + + DEL+ + +++ V + E A GQ G+
Sbjct: 2 SSGSSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGY 61
Query: 87 FPESYVEPCDETG 99
PE Y++ +G
Sbjct: 62 VPEKYLQFPTSSG 74
Score = 56.2 bits (136), Expect = 8e-11
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 98 TGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGD-RTGLFPSNYV 154
T P Y Y +++P +LT + EV+ V + DW + G P Y+
Sbjct: 8 TLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYL 67
Query: 155 VPYEAQTPAAA 165
+ P++
Sbjct: 68 QFPTSSGPSSG 78
Score = 48.1 bits (115), Expect = 7e-08
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 207 AAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKR 265
++ + P V+ Y A+ ++L++ +++ + W +A+ K
Sbjct: 2 SSGSSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWV----KARNKVG 57
Query: 266 QVGWFPASYVKVMGGGGIS 284
QVG+ P Y++ G S
Sbjct: 58 QVGYVPEKYLQFPTSSGPS 76
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 62.5 bits (152), Expect = 6e-13
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRN-GDELSFQPGDIIMV---PVKQNAEPGWLAGELR- 81
++P S+ RA+Y+FV N E++ + GD++ + + W +
Sbjct: 3 EFGSEPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKN 62
Query: 82 GQTGWFPESYVEPCDETGEVVPEY 105
G G+ P +Y+E ++
Sbjct: 63 GNIGYIPYNYIEIIKRRKKIEHVD 86
Score = 61.0 bits (148), Expect = 2e-12
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 104 EYYIAAYPYDSTEP-GDLTFNQDEVIYVTKK------ENDWWTGTIGD-RTGLFPSNYVV 155
E+ A Y + P ++ + +++ + K ++DWW + G P NY+
Sbjct: 15 EFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 74
Query: 156 PYEAQTPAAAVDPTPAT 172
+ + VD T
Sbjct: 75 IIKRRKKIEHVDDETRT 91
Score = 44.0 bits (104), Expect = 3e-06
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 217 KPEIATVLAPYTATSSEQ-LSLSRGQLIMIRKKT-----TTGWWEGELQAKGKKRQVGWF 270
K E A L + + E ++L +G L+ I K + WW+ K +G+
Sbjct: 13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT----KNGNIGYI 68
Query: 271 PASYVKVM 278
P +Y++++
Sbjct: 69 PYNYIEII 76
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 62.1 bits (151), Expect = 7e-13
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 10/65 (15%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTG---------TIGDRTGLFPSNY 153
+Y++A + Y + DL+F + + V + WW G PSNY
Sbjct: 8 QYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNY 67
Query: 154 VVPYE 158
V
Sbjct: 68 VAEDS 72
Score = 55.1 bits (133), Expect = 2e-10
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW---------LAGELRGQTGW 86
S + + A++++ +R ++LSF+ GD + V + GW G + G+
Sbjct: 5 SSGQYFVALFDYQARTAEDLSFRAGDKLQ--VLDTSHEGWWLARHLEKKGTGLGQQLQGY 62
Query: 87 FPESYVEP 94
P +YV
Sbjct: 63 IPSNYVAE 70
Score = 52.8 bits (127), Expect = 1e-09
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGK----KRQVGWFPASY 274
+ L Y A ++E LS G + + + GWW K ++ G+ P++Y
Sbjct: 8 QYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNY 67
Query: 275 VKVMGG 280
V G
Sbjct: 68 VAEDSG 73
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 61.5 bits (150), Expect = 7e-13
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRTGLFPSNYVVPYEAQTP 162
+A + Y + + +L ++E +++ WW ++TG PSNYV +
Sbjct: 8 VVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERKNSARA 67
Query: 163 AAA 165
AA
Sbjct: 68 AAN 70
Score = 54.2 bits (131), Expect = 4e-10
Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
+E A +++V++ EL + + + + +++ W +TG+ P +YVE
Sbjct: 5 AEEVVVVAKFDYVAQQEQELDIKKNERLW--LLDDSKSWWRVRNSMNKTGFVPSNYVERK 62
Query: 96 D 96
+
Sbjct: 63 N 63
Score = 41.9 bits (99), Expect = 8e-06
Identities = 9/68 (13%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 213 PKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
+ + Y A ++L + + + + + + WW + + + G+ P+
Sbjct: 2 STMAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSK-SWW----RVRNSMNKTGFVPS 56
Query: 273 SYVKVMGG 280
+YV+
Sbjct: 57 NYVERKNS 64
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 61.8 bits (150), Expect = 9e-13
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRTGLFPSNYV 154
IA + Y + + +L ++E +++ WW +RTG PSNYV
Sbjct: 31 EVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYV 83
Score = 53.7 bits (129), Expect = 9e-10
Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWF 87
+ ++E A +++ ++ EL + + + + +++ W +TG+
Sbjct: 21 SLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLW--LLDDSKTWWRVRNAANRTGYV 78
Query: 88 PESYVE 93
P +YVE
Sbjct: 79 PSNYVE 84
Score = 43.7 bits (103), Expect = 3e-06
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 199 TPDFSSFTAAQ-AGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGE 257
PD++S + I YTA ++L + + + + + + WW
Sbjct: 11 NPDYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWW--- 66
Query: 258 LQAKGKKRQVGWFPASYVK 276
+ + + G+ P++YV+
Sbjct: 67 -RVRNAANRTGYVPSNYVE 84
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 62.2 bits (151), Expect = 1e-12
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNG--------DELSFQPGDIIMVPVKQNAEPGWLAG 78
+ + R + A++++ +EL F+ G II V G+ G
Sbjct: 6 SGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKV-YGDKDADGFYRG 64
Query: 79 ELRGQTGWFPESYVEPCD 96
E + G P + V
Sbjct: 65 ETCARLGLIPCNMVSEIQ 82
Score = 60.3 bits (146), Expect = 5e-12
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 104 EYYIAAYPYDSTEP--------GDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNY 153
++A + YD +L F + ++I V + ++ G R GL P N
Sbjct: 18 RIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNM 77
Query: 154 VVPYEAQTPAAAVDPTPAT 172
V +A P++
Sbjct: 78 VSEIQADDEEMMDQSGPSS 96
Score = 41.0 bits (96), Expect = 3e-05
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
++P + E+L GQ+I + K G++ GE ++G P + V
Sbjct: 28 PLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETC-----ARLGLIPCNMVS 79
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 61.5 bits (149), Expect = 2e-12
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNG------DELSFQPGDIIMVPVKQNAEPGWLAGE- 79
+ ++ + A Y + +G EL G + V E G+ GE
Sbjct: 6 SGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYV-YGDMDEDGFYEGEL 64
Query: 80 LRGQTGWFPESYVEPCDETGEVVP 103
L GQ G P ++V+ + +
Sbjct: 65 LDGQRGLVPSNFVDFVQDNESRLA 88
Score = 52.6 bits (126), Expect = 3e-09
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 103 PEYYIAAYPYDSTE------PGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNY 153
+A Y Y+ + +L + +YV ++ ++ G + D + GL PSN+
Sbjct: 17 VHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNF 76
Query: 154 VVPYEAQTPAAAVDPTPAT 172
V + A P++
Sbjct: 77 VDFVQDNESRLASTSGPSS 95
Score = 42.2 bits (99), Expect = 1e-05
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSS------EQLSLSRGQLIMIRKKTT-TGWWE 255
SS ++ + K + Y +L L+ G+ + + G++E
Sbjct: 2 SSGSSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYE 61
Query: 256 GELQAKGKKRQVGWFPASYVKVM 278
GEL Q G P+++V +
Sbjct: 62 GEL----LDGQRGLVPSNFVDFV 80
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 62.0 bits (150), Expect = 2e-12
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI---GDRTGLFPSNYV 154
+ +A Y + + L+ +V+ + + DW+ G + G+FP +++
Sbjct: 59 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCGDWYRGYLIKHKMLQGIFPKSFI 113
Score = 57.4 bits (138), Expect = 8e-11
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
Query: 168 PTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPY 227
P P + + SS G S SS G K + +
Sbjct: 16 QIPDAPPPIPKEPSNYDFSGPSSGIEGRGSSGSSGSS-------GSSGDKERHGVAIYNF 68
Query: 228 TATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
+ + QLSL G ++ I++ W+ G L K G FP S++ +
Sbjct: 69 QGSGAPQLSLQIGDVVRIQETCGD-WYRGYLI--KHKMLQGIFPKSFIHI 115
Score = 55.5 bits (133), Expect = 4e-10
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQT 84
+ + + + R AIY F +LS Q GD++ + Q W G L +
Sbjct: 49 SGSSGSSGDKERHGVAIYNFQGSGAPQLSLQIGDVVRI---QETCGDWYRGYLIKHKMLQ 105
Query: 85 GWFPESYVEPCDET 98
G FP+S++ + T
Sbjct: 106 GIFPKSFIHIKEVT 119
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 60.5 bits (147), Expect = 3e-12
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGD-ELSFQPGDIIMV---PVKQNAEPGWLAGELR- 81
++P S+ RA+Y+FV N + E++ + GD++ + + W +
Sbjct: 3 EFGSEPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKN 62
Query: 82 GQTGWFPESYVEPCDET 98
G G+ P +Y+E
Sbjct: 63 GNIGYIPYNYIEIIKRR 79
Score = 56.3 bits (136), Expect = 7e-11
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 104 EYYIAAYPYDSTEPG-DLTFNQDEVIYVTKK------ENDWWTGTIGD-RTGLFPSNYV 154
E+ A Y + P ++ + +++ + K ++DWW + G P NY+
Sbjct: 15 EFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 73
Score = 44.3 bits (105), Expect = 1e-06
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 206 TAAQAGTPKGKKPEIATVLAPYTATSSEQ-LSLSRGQLIMIRKKT-----TTGWWEGELQ 259
+ + K E A L + + E ++L +G L+ I K + WW+
Sbjct: 2 SEFGSEPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT- 60
Query: 260 AKGKKRQVGWFPASYVKVM 278
K +G+ P +Y++++
Sbjct: 61 ---KNGNIGYIPYNYIEII 76
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 59.6 bits (145), Expect = 3e-12
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYVVPYEAQ 160
+Y + Y + + +L+ +D+V+ + WW +G P+N +
Sbjct: 2 KYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIMRTP 59
Score = 53.4 bits (129), Expect = 6e-10
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
+ ++ Y+FV+RN ELS D++ + + W G +G+ P + ++
Sbjct: 2 KYAKSKYDFVARNSSELSVMKDDVLE--ILDDRRQWWKVRNASGDSGFVPNNILDI 55
Score = 44.5 bits (106), Expect = 7e-07
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
+ A + A +S +LS+ + ++ I WW + + G+ P + + +M
Sbjct: 2 KYAKSKYDFVARNSSELSVMKDDVLEILDDRR-QWW----KVRNASGDSGFVPNNILDIM 56
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 59.7 bits (145), Expect = 4e-12
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 88 PESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-R 145
PE E E IA Y Y + +P +L DE Y+ WW +
Sbjct: 8 PEDNRRSFQEPEE---TLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGH 64
Query: 146 TGLFPSNYV 154
G PS+Y+
Sbjct: 65 EGYAPSSYL 73
Score = 54.7 bits (132), Expect = 2e-10
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 21 PAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL 80
P T + E A+Y++ + + EL+ + + + + + W +
Sbjct: 3 PLPPTPEDNRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYL-LDSSEIHWWRVQDK 61
Query: 81 RGQTGWFPESYVE 93
G G+ P SY+
Sbjct: 62 NGHEGYAPSSYLV 74
Score = 50.4 bits (121), Expect = 1e-08
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 207 AAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQ 266
+ + + + L Y ++L+L + + + WW + + K
Sbjct: 9 EDNRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWW----RVQDKNGH 64
Query: 267 VGWFPASYVK 276
G+ P+SY+
Sbjct: 65 EGYAPSSYLV 74
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 59.7 bits (145), Expect = 5e-12
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYVVPYEAQ 160
IA Y Y + +P +L ++E + WW + G PS+Y+V
Sbjct: 19 ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSPN 78
Query: 161 T 161
Sbjct: 79 N 79
Score = 56.2 bits (136), Expect = 8e-11
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
+ P E A+Y++ + + EL+ + + + + + W + G G+
Sbjct: 8 EDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCL-LDSSEIHWWRVQDRNGHEGY 66
Query: 87 FPESYVEPCDETG 99
P SY+
Sbjct: 67 VPSSYLVEKSPNN 79
Score = 49.3 bits (118), Expect = 2e-08
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 206 TAAQAGTPKGK---KPEIATVLA--PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQA 260
++ +G + +PE V+A Y ++L+L R + + + WW +
Sbjct: 2 SSGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWW----RV 57
Query: 261 KGKKRQVGWFPASYVKVMGGGGISIQ 286
+ + G+ P+SY+ +
Sbjct: 58 QDRNGHEGYVPSSYLVEKSPNNLETY 83
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 64.6 bits (157), Expect = 5e-12
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Query: 190 SVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKT 249
++S P A A L + ++L G +I + T
Sbjct: 2 AMSSSHHYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDAT 61
Query: 250 TTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGISIQ 286
WW G + GWFPAS+V++
Sbjct: 62 NREWWWGRV-----ADGEGWFPASFVRLRVNQDEPAD 93
Score = 61.9 bits (150), Expect = 4e-11
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV 101
A+++ V+ + EL F+ GD+I V W G + GWFP S+V E
Sbjct: 34 EALWDHVTMDDQELGFKAGDVI--EVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEP 91
Query: 102 VPE 104
+
Sbjct: 92 ADD 94
Score = 57.3 bits (138), Expect = 2e-09
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 96 DETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
+ + A + + + + +L F +VI V N +WW G + D G FP+++V
Sbjct: 23 ELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 82
Query: 155 VPYEAQTP-----AAAVDPTPATPVVKDTPTKSE 183
Q A + A + + +
Sbjct: 83 RLRVNQDEPADDDAPLAGNSGAEDGGAEAQSSKD 116
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 59.2 bits (144), Expect = 6e-12
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGW 86
S+ +G AIY F + +S G+ + + ++++ GW G G+
Sbjct: 1 GSSGSSGG----HCVAIYHFEGSSEGTISMAEGEDLSL-MEEDKGDGWTRVRRKEGGEGY 55
Query: 87 FPESYVEPCDE 97
P SY+
Sbjct: 56 VPTSYLRVTSG 66
Score = 54.2 bits (131), Expect = 4e-10
Identities = 8/52 (15%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYV 154
+A Y ++ + G ++ + E + + +++ W + G P++Y+
Sbjct: 10 CVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYL 61
Score = 45.0 bits (107), Expect = 6e-07
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 213 PKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
G + + +S +S++ G+ + + ++ W + + K+ G+ P
Sbjct: 2 SSGSSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGW---TRVRRKEGGEGYVPT 58
Query: 273 SYVKVMGG 280
SY++V G
Sbjct: 59 SYLRVTSG 66
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 60.2 bits (146), Expect = 6e-12
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYVVPYE 158
++A Y Y++ DL+F + E + E DWW ++G PSNYVVP +
Sbjct: 27 VTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPAD 85
Score = 59.4 bits (144), Expect = 1e-11
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 194 GSRSGTPDFSSFTAAQAGTPKGKKPEIATVLA--PYTATSSEQLSLSRGQLIMIRKKTTT 251
GS + SSF+ + P G + +A Y A ++E LS +G+ I T
Sbjct: 1 GSSGSSGASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEG 60
Query: 252 GWWEGELQAKGKKRQVGWFPASYVK 276
WWE A GK G+ P++YV
Sbjct: 61 DWWEARSIATGKS---GYIPSNYVV 82
Score = 59.4 bits (144), Expect = 1e-11
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTG 85
++S + A+Y++ +R ++LSF+ G+ + + W A + G++G
Sbjct: 16 SSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQI-INNTEGDWWEARSIATGKSG 74
Query: 86 WFPESYVEPCD 96
+ P +YV P D
Sbjct: 75 YIPSNYVVPAD 85
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 60.2 bits (146), Expect = 7e-12
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESYVEPCDET 98
+Y+F + DEL+ G+ + + N W + G G P +V D
Sbjct: 9 IVLYDFKAEKADELTTYVGENLFICAHHN--CEWFIAKPIGRLGGPGLVPVGFVSIIDIA 66
Query: 99 GEVVPE 104
Sbjct: 67 TGYATG 72
Score = 59.0 bits (143), Expect = 2e-11
Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRT---GLFPSNYVVPYEAQ 160
Y I Y + + + +LT E +++ N +W+ R GL P +V +
Sbjct: 7 YAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIA 66
Query: 161 TPAAAVDPTPATPVVKDTPTKSEGVTRT-----SSVSGGS 195
T A + + PT E + S++S GS
Sbjct: 67 TGYATGNDVIEDIKSVNLPTVQEWKSNIARYKASNISLGS 106
Score = 54.0 bits (130), Expect = 1e-09
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
A VL + A +++L+ G+ + I W+ + G+ G P +V ++
Sbjct: 8 AIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKP--IGRLGGPGLVPVGFVSII 63
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 59.1 bits (143), Expect = 9e-12
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Query: 27 TASTDPTGVSEYRRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG--- 82
++ P G + RA+ +F + L+ + GD+I V ++Q+ G G +
Sbjct: 10 SSGLVPRGS---LKVRALKDFWNLHDPTALNVRAGDVITV-LEQH-PDGRWKGHIHESQR 64
Query: 83 ---QTGWFPESYVEPCDE 97
+ G+FP VE +
Sbjct: 65 GTDRIGYFPPGIVEVVSK 82
Score = 55.6 bits (134), Expect = 2e-10
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 105 YYIAAYPY-DSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI------GDRTGLFPSNYV 154
A + + +P L +VI V ++ + W G I DR G FP V
Sbjct: 20 KVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIV 77
Score = 53.3 bits (128), Expect = 1e-09
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 228 TATSSEQLSLSRGQLIMIRKKTTTGWWEGELQ-AKGKKRQVGWFPASYVKVM 278
L++ G +I + ++ G W+G + ++ ++G+FP V+V+
Sbjct: 29 NLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVV 80
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 58.2 bits (141), Expect = 2e-11
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 213 PKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
G ++ +A Y G + + ++ GWW ++ K + GW P+
Sbjct: 5 SSGNLKDVYVSIADYEGDEET-AGFQEGVSMEVLERNPNGWWYCQILDGVKPFK-GWVPS 62
Query: 273 SYVKVM 278
+Y++
Sbjct: 63 NYLEKK 68
Score = 55.2 bits (133), Expect = 2e-10
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD----RTGLFPSNYVVP 156
+ + Y++ Y+ E F + + V ++ N WW I D G PSNY+
Sbjct: 9 LKDVYVSIADYEGDE-ETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEK 67
Query: 157 YEA 159
+
Sbjct: 68 KNS 70
Score = 49.8 bits (119), Expect = 1e-08
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 30 TDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW----LAGELRGQTG 85
+ + + Y +I ++ + FQ G + V +++N GW + ++ G
Sbjct: 2 SSGSSGNLKDVYVSIADYEGDE-ETAGFQEGVSMEV-LERN-PNGWWYCQILDGVKPFKG 58
Query: 86 WFPESYVEPCDET 98
W P +Y+E +
Sbjct: 59 WVPSNYLEKKNSG 71
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 57.4 bits (139), Expect = 3e-11
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGD--RTGLFPSNYVVPYEA 159
I + +PG+L F + +V+ + + + W+ + GL + +
Sbjct: 20 CITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERSG 77
Score = 52.4 bits (126), Expect = 2e-09
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQT 84
+ + + E EL+F+ GD++ + ++ W + GQ
Sbjct: 6 SGRMPTRRWAPGTQCITKCEHTRPKPGELAFRKGDVVTI-LEACENKSWYRVKHHTSGQE 64
Query: 85 GWFPESYVEP 94
G +
Sbjct: 65 GLLAAGALRE 74
Score = 47.0 bits (112), Expect = 2e-07
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT-TGWWEGELQAK 261
SS ++ + T + +T +L+ +G ++ I + W+ +
Sbjct: 2 SSGSSGRMPTRRWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTS 61
Query: 262 GKKRQVGWFPASYVKVMGG 280
G Q G A ++ G
Sbjct: 62 G---QEGLLAAGALRERSG 77
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 58.4 bits (141), Expect = 3e-11
Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 5/79 (6%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESYVEPCDET 98
+YEF + DEL PG+ + + + W + G G P SYV D
Sbjct: 7 VTLYEFKAERDDELDVSPGENLSICAHYD--YEWFIAKPINRLGGPGLVPVSYVRIIDLM 64
Query: 99 GEVVPEYYIAAYPYDSTEP 117
+
Sbjct: 65 DPAKYASVDTYDREQVMKI 83
Score = 56.9 bits (137), Expect = 1e-10
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRT---GLFPSNYVVPYE 158
P + + Y + + +L + E + + + +W+ +R GL P +YV +
Sbjct: 3 PLFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIID 62
Query: 159 AQTPAAAVDPTPATP 173
PA
Sbjct: 63 LMDPAKYASVDTYDR 77
Score = 53.8 bits (129), Expect = 2e-09
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
P A L + A ++L +S G+ + I W+ + + G P SYV++
Sbjct: 3 PLFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKP--INRLGGPGLVPVSYVRI 60
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 59.7 bits (144), Expect = 4e-11
Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGD---RTGLFPSNYVVPYEAQ 160
+ +A Y + + L+ +V+ + + DW+ G + G+FP +++ E
Sbjct: 18 RHGVAIYNFQGSGAPQLSLQIGDVVRIQETCGDWYRGYLIKHKMLQGIFPKSFIHIKEVT 77
Query: 161 TPAAAVDPTPA---TPVVKDTPT 180
P+ ++ T
Sbjct: 78 VEKRRNTENIIPAEIPLAQEVTT 100
Score = 52.0 bits (124), Expect = 2e-08
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESY 91
+ R AIY F +LS Q GD++ + W G L + G FP+S+
Sbjct: 14 ADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQET---CGDWYRGYLIKHKMLQGIFPKSF 70
Query: 92 VEPCDETGEVVPEYY 106
+ + T E
Sbjct: 71 IHIKEVTVEKRRNTE 85
Score = 50.9 bits (121), Expect = 5e-08
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
SS ++ A K K + + + + QLSL G ++ I++ W+ G L
Sbjct: 2 SSGSSGMAPWRKADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCGD-WYRGYLI--K 58
Query: 263 KKRQVGWFPASYVKVM 278
K G FP S++ +
Sbjct: 59 HKMLQGIFPKSFIHIK 74
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 56.6 bits (137), Expect = 4e-11
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 42 RAIYEFVSRNGD-ELSFQPGDIIMV---PVKQNAEPGWLAGELR-GQTGWFPESYVEP 94
RA+Y+FV N + E++ + GD++ + + W + G G+ P +Y+E
Sbjct: 11 RALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 68
Score = 56.2 bits (136), Expect = 6e-11
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 104 EYYIAAYPYDSTEP-GDLTFNQDEVIYVTKK------ENDWWTGTIGD-RTGLFPSNYV 154
+ A Y + P ++ + +++ + K ++DWW + G P NY+
Sbjct: 8 HFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 66
Score = 47.4 bits (113), Expect = 1e-07
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQ-LSLSRGQLIMIRKKT-----TTGWWEGELQAKGKK 264
G+ A L + + E ++L +G L+ I K + WW+ K
Sbjct: 1 GSHHHHH-HFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT----KN 55
Query: 265 RQVGWFPASYVKVM 278
+G+ P +Y++++
Sbjct: 56 GNIGYIPYNYIEII 69
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 56.5 bits (136), Expect = 7e-11
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEP 94
+ Y I G L PGDI+ + K AE W G + GWFP + V P
Sbjct: 19 QEYYGIPPPPGAFGGFLRLNPGDIVEL-TKAEAEHNWWEGRNTATNEVGWFPCNRVHP 75
Score = 51.9 bits (124), Expect = 3e-09
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 101 VVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKE--NDWWTG--TIGDRTGLFPSNYVVP 156
V + Y P G L N +++ +TK E ++WW G T + G FP N V P
Sbjct: 16 EVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP 75
Query: 157 Y 157
Y
Sbjct: 76 Y 76
Score = 45.4 bits (107), Expect = 7e-07
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLI-MIRKKTTTGWWEGELQAKGKKRQVGW 269
G PK + + + P L L+ G ++ + + + WWEG A + VGW
Sbjct: 11 GLPKMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNE---VGW 67
Query: 270 FPASYVK 276
FP + V
Sbjct: 68 FPCNRVH 74
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 59.0 bits (143), Expect = 4e-10
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 8/103 (7%)
Query: 58 QPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEP 117
P + + PV + EP S E P ++A Y + ++
Sbjct: 4 DPSEALQRPVASDFEPQ------GLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGD 57
Query: 118 GDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYE 158
L+ + E + V ++ W + G PSNY+ P
Sbjct: 58 NTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN 100
Score = 51.3 bits (123), Expect = 1e-07
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
++ + A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P
Sbjct: 41 NDPNLFVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITPV 99
Query: 96 D 96
+
Sbjct: 100 N 100
Score = 47.5 bits (113), Expect = 2e-06
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 177 DTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLS 236
P+++ S S ++S AG P P + L + A+ LS
Sbjct: 3 MDPSEALQRPVASDFEPQGLSEAARWNSKENLLAG-PSENDPNLFVALYDFVASGDNTLS 61
Query: 237 LSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
+++G+ + + G W K GW P++Y+
Sbjct: 62 ITKGEKLRVLGYNHNGEW----CEAQTKNGQGWVPSNYIT 97
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 57.5 bits (139), Expect = 8e-10
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
+ +Y++ ++N DEL+F G II V +P W GE+ GQ G FP +YV+ +
Sbjct: 4 QVIGMYDYTAQNDDELAFSKGQIINVL--NKEDPDWWKGEVSGQVGLFPSNYVKLTTD 59
Score = 54.0 bits (130), Expect = 1e-08
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQTPA 163
I Y Y + +L F++ ++I V KE+ DWW G + + GLFPSNYV P
Sbjct: 4 QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDP- 62
Query: 164 AAVDPTPATPVVKDTPTKSE 183
+ + D T +E
Sbjct: 63 --SQQWCSDLHLLDMLTPTE 80
Score = 45.9 bits (109), Expect = 5e-06
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
+ YTA + ++L+ S+GQ+I + K WW+GE+ + VG FP++YVK+
Sbjct: 5 VIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQ-----VGLFPSNYVKLT 57
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 57.8 bits (140), Expect = 1e-09
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 98 TGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWT--GTIGDRTGLFPSNYVV 155
G + +A Y Y++ DL+F + + + V ++ +WW + G PSNYV
Sbjct: 3 MGSGIRIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVA 62
Query: 156 PYE 158
+
Sbjct: 63 RVD 65
Score = 47.4 bits (113), Expect = 3e-06
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 32 PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPES 90
G A+Y++ + + ++LSFQ GD ++ V + + W A L + G+ P +
Sbjct: 2 AMGSGIRIIVVALYDYEAIHHEDLSFQKGDQMV--VLEESGEWWKARSLATRKEGYIPSN 59
Query: 91 YVEPCD 96
YV D
Sbjct: 60 YVARVD 65
Score = 38.5 bits (90), Expect = 0.002
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
I L Y A E LS +G +++ ++ + WW+ A K+ G+ P++YV
Sbjct: 10 IVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKE---GYIPSNYV 61
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex,
GRB2,VAV, signaling protein/signaling protein complex;
1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 52.7 bits (126), Expect = 1e-09
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEP 94
+ Y I G L PGDI+ + K AE W G + GWFP + V P
Sbjct: 11 QEYYGIPPPPGAFGPFLRLNPGDIVEL-TKAEAEHNWWEGRNTATNEVGWFPCNRVHP 67
Score = 48.4 bits (115), Expect = 5e-08
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTG--TIGDRTGLFPSNYVVPY 157
Y P L N +++ +TK E + WW G T + G FP N V PY
Sbjct: 13 YYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY 68
Score = 48.0 bits (114), Expect = 6e-08
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 210 AGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLI-MIRKKTTTGWWEGELQAKGKKRQVG 268
+ PK + + + P L L+ G ++ + + + WWEG A + VG
Sbjct: 2 SHMPKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNE---VG 58
Query: 269 WFPASYVK 276
WFP + V
Sbjct: 59 WFPCNRVH 66
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 53.1 bits (127), Expect = 2e-09
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKE----NDWWTGTIGD--------RTGLFPSNYV 154
+A Y + + LT ++ +V+YV K +W G++ R G FPS+ V
Sbjct: 26 VALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIV 85
Query: 155 VPYEAQTPAAAVDPT 169
+ P T
Sbjct: 86 REDQTLKPGKVDVKT 100
Score = 50.8 bits (121), Expect = 1e-08
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE-PGWLAGELRGQ--------TGWFPES 90
A+ ++++ + L+ G ++ V K + G ++G G+FP S
Sbjct: 24 MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSS 83
Query: 91 YVEPCDETGEVVPEYYIAAYPYD 113
V + + +D
Sbjct: 84 IVREDQTLKP--GKVDVKTDKWD 104
Score = 45.8 bits (108), Expect = 9e-07
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKK---TTTGWWEGEL---QAKGKKRQVGWFPAS 273
+A L Y A L++ RGQ++ + K +W G + ++G+FP+S
Sbjct: 24 MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSS 83
Query: 274 YVKV 277
V+
Sbjct: 84 IVRE 87
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 56.0 bits (134), Expect = 4e-09
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 16 AWDNAPAADTWTASTDPTGVSE--YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEP 73
+ A+ + + D AIY R DE+ +PGDII V N
Sbjct: 418 QTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIG--VAGNHWD 475
Query: 74 GWLAGELR--GQTGWFPESYVEP 94
G+ G R G+TG +P V
Sbjct: 476 GYSKGVNRKLGRTGLYPSYKVRE 498
Score = 48.7 bits (115), Expect = 1e-06
Identities = 13/97 (13%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 180 TKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSR 239
T S V R + + + + G+ + + +++++ +
Sbjct: 404 TFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEP 463
Query: 240 GQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
G +I + G+ +G + G+ G +P+ V+
Sbjct: 464 GDIIGVAGNHWDGYSKGVNRKLGRT---GLYPSYKVR 497
Score = 46.0 bits (108), Expect = 8e-06
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 6/94 (6%)
Query: 69 QNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPE---YYIAAYPYDSTEPGDLTFNQD 125
+++ +A E+ + D+ + IA Y + ++
Sbjct: 405 FSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPG 464
Query: 126 EVIYVTKKEND-WWTGTIGD--RTGLFPSNYVVP 156
++I V D + G RTGL+PS V
Sbjct: 465 DIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVRE 498
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 54.5 bits (130), Expect = 6e-09
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Query: 91 YVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVT-KKENDWWTGTIGD-RTGL 148
+ EY A + ++ + DL F + +++ + K E WW + + G+
Sbjct: 124 RQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGM 183
Query: 149 FPSNYVVPYEAQTPAAAVDPTPATP 173
P YV Y + + +
Sbjct: 184 IPVPYVEKYRPASASVSALIGGNQE 208
Score = 51.8 bits (123), Expect = 4e-08
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 26 WTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG 85
S E RA+++F + ++L F+ GDI+ + + E W A + G+ G
Sbjct: 124 RQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRI-RDKPEEQWWNAEDSEGKRG 182
Query: 86 WFPESYVEP 94
P YVE
Sbjct: 183 MIPVPYVEK 191
Score = 46.8 bits (110), Expect = 2e-06
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
+ E L +G ++ IR K WW E + + G P YV+
Sbjct: 145 FNGNDEEDLPFKKGDILRIRDKPEEQWWNAED----SEGKRGMIPVPYVEKY 192
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 52.5 bits (126), Expect = 5e-08
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWT--GTIGDRTGLFPSNYVVPYE 158
++A Y Y+S DL+F + E + + E DWW +TG PSNYV P +
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
Score = 47.1 bits (112), Expect = 3e-06
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 96
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P D
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
Score = 39.0 bits (91), Expect = 0.001
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 226 PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
Y + + LS +G+ + I T WW + G+ G+ P++YV
Sbjct: 10 DYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQT---GYIPSNYV 56
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 51.2 bits (121), Expect = 6e-08
Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 13/104 (12%)
Query: 4 SARAVANSWGDNAWDNAPAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDII 63
S+ A N A + +A +++ + + DEL + GD++
Sbjct: 108 SSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVV 167
Query: 64 MVPVKQNAE---PGWLAG----------ELRGQTGWFPESYVEP 94
+V QN E GWL G +L G FPE++ E
Sbjct: 168 LVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTER 211
Score = 38.9 bits (89), Expect = 8e-04
Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 16/85 (18%)
Query: 88 PESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND------WWTGT 141
+ A + Y +T+ +L +V+ V +N W G
Sbjct: 127 EGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGV 186
Query: 142 IGD----------RTGLFPSNYVVP 156
G+FP N+
Sbjct: 187 KESDWNQHKKLEKCRGVFPENFTER 211
Score = 38.5 bits (88), Expect = 0.001
Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 12/133 (9%)
Query: 156 PYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKG 215
P EA A P +T + +V + T + + + AG
Sbjct: 78 PAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDL 137
Query: 216 KKPEIATVLA--PYTATSSEQLSLSRGQLIMIRKKTTT-----GWWEGE-----LQAKGK 263
+ V A YTAT +++L L G ++++ GW G Q K
Sbjct: 138 PPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKL 197
Query: 264 KRQVGWFPASYVK 276
++ G FP ++ +
Sbjct: 198 EKCRGVFPENFTE 210
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 51.2 bits (123), Expect = 1e-07
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYV--TKKENDWW-----TGTIGDRTGLFPSNYVVPYE 158
IA Y + T DL F + +V+ + K+ +W+ G R G+ P+NYV E
Sbjct: 14 CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVG----REGIIPANYVQKRE 69
Score = 50.4 bits (121), Expect = 3e-07
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 29 STDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW-LAGELRGQTGWF 87
S A Y F +L F GD++ + V +P W A G+ G
Sbjct: 2 SAIQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTI-VAVTKDPNWYKAKNKVGREGII 60
Query: 88 PESYVEPCD 96
P +YV+ +
Sbjct: 61 PANYVQKRE 69
Score = 48.1 bits (115), Expect = 1e-06
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 206 TAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKR 265
+A QA P G + T+ + L +G ++ I T W +AK K
Sbjct: 2 SAIQASWPSGT---ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNW---YKAKNKVG 55
Query: 266 QVGWFPASYVK 276
+ G PA+YV+
Sbjct: 56 REGIIPANYVQ 66
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 47.8 bits (113), Expect = 5e-07
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPSNYVVPY 157
IA + Y+ + GDL F + E + + ++ +WW + G P N+V
Sbjct: 15 VIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAKA 68
Score = 46.6 bits (110), Expect = 1e-06
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTG 85
S P + A++ + + +L F+ G+ + + W + GQ G
Sbjct: 2 GSNPPASPLQDNLVIALHSYEPSHDGDLGFEKGEQLRIL---EQSGEWWKAQSLTTGQEG 58
Query: 86 WFPESYVEPC 95
+ P ++V
Sbjct: 59 FIPFNFVAKA 68
Score = 33.5 bits (76), Expect = 0.038
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 208 AQAGTPKGKKPE-IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQ 266
+ P + + L Y + L +G+ + I ++ + WW+ + G Q
Sbjct: 1 GGSNPPASPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTG---Q 56
Query: 267 VGWFPASYVKVM 278
G+ P ++V
Sbjct: 57 EGFIPFNFVAKA 68
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 49.1 bits (117), Expect = 8e-07
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWT--GTIGDRTGLFPSNYVVPYE 158
++A Y Y+S DL+F + E + + E DWW +TG PSNYV P +
Sbjct: 85 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 143
Score = 48.3 bits (115), Expect = 1e-06
Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 3/121 (2%)
Query: 156 PYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKG 215
+ A A TP+ P D ++ G + T+ Q P
Sbjct: 23 VHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFGGFNSSDTVTSPQRAGPLA 82
Query: 216 KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
L Y + + LS +G+ + I T WW + G+ G+ P++YV
Sbjct: 83 GGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQT---GYIPSNYV 139
Query: 276 K 276
Sbjct: 140 A 140
Score = 42.2 bits (99), Expect = 1e-04
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEP 94
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P
Sbjct: 83 GGVTTFVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLSTGQTGYIPSNYVAP 141
Query: 95 CD 96
D
Sbjct: 142 SD 143
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 45.4 bits (107), Expect = 9e-07
Identities = 12/75 (16%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKE-----NDWWTGTIGDRTGLFPSNYVVPY 157
+ + A +++ + D++ + +++ V KK+ + W G G S+++ PY
Sbjct: 17 EKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPY 76
Query: 158 EAQTPAAAVDPTPAT 172
+ + P++
Sbjct: 77 NPRRSHSDASSGPSS 91
Score = 44.6 bits (105), Expect = 2e-06
Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE--PGWLAGELRGQTGWFPESYVEPCD 96
+ ++A F + ++S GD++ V K++ + G+ S+++P +
Sbjct: 18 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYN 77
Query: 97 ET 98
Sbjct: 78 PR 79
Score = 35.0 bits (80), Expect = 0.004
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 9/58 (15%)
Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKT----TTGWWEGELQAKGKKRQVGWFPASYVK 276
+ A +SL G L+ + KK + W + G+ +S++K
Sbjct: 22 AERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLID-----NGVTKGFVYSSFLK 74
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 2e-05
Identities = 46/334 (13%), Positives = 88/334 (26%), Gaps = 155/334 (46%)
Query: 4 SARAVANSWGDNAWDNAPAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDII 63
+A A+A D+W + + ++ + + + F
Sbjct: 279 TAVAIA------------ETDSW---------ESF--FVSVRKAI-----TVLF------ 304
Query: 64 MVPVKQNAEPGWLAGELRGQTGWFPESYVEP-----CDETGEVVPEY--YIAAYPYDSTE 116
++ G +R +P + + P E E VP I+ + +
Sbjct: 305 -----------FI-G-VRCY-EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 117 PGDLTFNQ----DEVIYVTKKENDWWTGTIGDRTGLF--PSNYVVPYEAQTPAAAVDPTP 170
N + + + L N VV
Sbjct: 351 DYVNKTNSHLPAGKQVEI----------------SLVNGAKNLVV--------------- 379
Query: 171 ATPVVKDT-PTKS-EGVT----RTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIAT-- 222
+ P +S G+ + + SG +S P FS +K + +
Sbjct: 380 -------SGPPQSLYGLNLTLRKAKAPSGLDQSRIP-FSE-----------RKLKFSNRF 420
Query: 223 --VLAPY------TATSSEQLSLSRGQLIMIRKK--------TTTGWWEGELQAKGK--- 263
V +P+ A+ L + + K T G +L+
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNN-VSFNAKDIQIPVYDTFDG---SDLRVLSGSIS 476
Query: 264 --------KRQVGW-----FPASYVKVMGGGGIS 284
+ V W F A+++ G GG S
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Length = 82
Score = 39.6 bits (92), Expect = 8e-05
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 206 TAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMI--RKKTTTGWWEGELQAKGK 263
+ G+ E+ VL ++A S +LS+ GQ + + R GW +
Sbjct: 5 SPGIPGSTLSGGCELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTT-ERS 63
Query: 264 KRQVGWFPASYVKV 277
Q G P+S + +
Sbjct: 64 PPQEGLVPSSTLCI 77
Score = 35.4 bits (81), Expect = 0.002
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW----LAGELRGQTGWFPESYVEP 94
+ +F + + ELS Q G + + + + PGW Q G P S +
Sbjct: 22 VLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTLCI 77
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 39.2 bits (90), Expect = 0.001
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 55 LSFQPGDIIMVPVKQNA---EPGWLAGELR--GQTGWFPESYVEP 94
LSF GD+I++ GW G Q G FP V
Sbjct: 593 LSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYV 637
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 36.2 bits (83), Expect = 0.002
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG-WLAGELRGQTGWFPESYVE 93
+A + +ELSF+ G+ I + + G WL RG G+ + VE
Sbjct: 32 KACCDVKGG-KNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVE 83
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 36.0 bits (82), Expect = 0.010
Identities = 18/116 (15%), Positives = 29/116 (25%), Gaps = 18/116 (15%)
Query: 106 YI-AAYPYDSTEPGDLTFNQDEVIYVT----------KKENDWWTGTIGDRT------GL 148
YI + + + P L F + +V +V W R G+
Sbjct: 6 YIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGI 65
Query: 149 FPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSS 204
P+ A AA P R + G++ T
Sbjct: 66 IPNQSRAEQLASLEAAQRAVGV-GPGSSAGSNARAEFWRLRGLRRGAKKTTQRSRE 120
Score = 34.0 bits (77), Expect = 0.046
Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 8/75 (10%)
Query: 34 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
G S Y R +E L F GD+ V PG RG G + +
Sbjct: 2 GDSFY--IRTHFELEPSPPSGLGFTRGDVFH--VLDTLHPGPGQSHARG--GHWLAVRMG 55
Query: 94 PCDETGE--VVPEYY 106
E ++P
Sbjct: 56 RDLREQERGIIPNQS 70
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 28.8 bits (65), Expect = 0.48
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 25 TWTASTDPTGVSEYRRYR 42
+WTASTD GV+ Y Y
Sbjct: 23 SWTASTDNVGVTGYDVYN 40
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 30.7 bits (70), Expect = 0.49
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEND----WWTGTIGDRTGLFPSNYVVPYEAQTP 162
A + Y+ +L + + + + +E++ WW + D+ G P N + Y P
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRIKP 233
>1m4z_A Origin recognition complex subunit 1; DNA replication,
transcriptional silencing, chromatin, BAH D gene
regulation; 2.20A {Saccharomyces cerevisiae} SCOP:
b.34.12.1 PDB: 1zhi_A 1zbx_A
Length = 238
Score = 30.1 bits (67), Expect = 0.72
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 7/100 (7%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG-WLAGELR-GQTGWFPESYVEPCD 96
RR ++ R+ D + GD +++ + ++ ELR E +
Sbjct: 35 RRGAKTEHYLKRSSDGIKLGRGDSVVMHNEAAGTYSVYMIQELRLNTLNNVVELWALTYL 94
Query: 97 ETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND 136
EV P + Y P N+ Y
Sbjct: 95 RWFEVNPLAH-----YRQFNPDANILNRPLNYYNKLFSET 129
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 30.3 bits (67), Expect = 0.79
Identities = 16/123 (13%), Positives = 34/123 (27%), Gaps = 4/123 (3%)
Query: 93 EPCDETGEVVPEYYIAAYPYDST---EPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLF 149
C + + VP ++A D T G N + + + D T
Sbjct: 8 SECKQKHKFVPGVWMAGEGMDVTTLRRSGSFPVNTQRFLRPDRTCTLCKNSLMRDATQRL 67
Query: 150 PSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQ 209
P + + + + A + + + G ++ A+
Sbjct: 68 PVA-ITHWRPHSSHCQRNVAAAKVHSTEGVAREAAANINNDWRVGLDVNPRPEANMRASV 126
Query: 210 AGT 212
AG+
Sbjct: 127 AGS 129
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription;
1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Length = 232
Score = 29.7 bits (66), Expect = 0.83
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG-WLAGELR-GQTGWFPESYVEPCD 96
R+ F+ R D LSF G+ ++ +L E+R E +V
Sbjct: 35 RKRGGENVFLKRISDGLSFGKGESVIFNDNVTETYSVYLIHEIRLNTLNNVVEIWVFSYL 94
Query: 97 ETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND 136
E+ P+ Y Y+ P + + Y K N+
Sbjct: 95 RWFELKPKLY-----YEQFRPDLIKEDHPLEFYKDKFFNE 129
>3njc_A YSLB protein; NESG, PSI, structural genomics, protein structure
initiative northeast structural genomics consortium,
unknown function; 1.69A {Bacillus subtilis subsp}
Length = 158
Score = 28.4 bits (63), Expect = 1.7
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 46 EFVSRNGDELSFQ-PGDIIMVPVKQNAEP------GWLAGELRGQTGWFPESYVEPCDET 98
VS EL F+ G II +K EP G++A +++ ESY +
Sbjct: 84 TNVSAKKQELEFELEGPIISNRLKHQKEPCFQLEAGFIAEQIQLMNDQIAESYEQVKKRA 143
Query: 99 GEVV 102
+VV
Sbjct: 144 DKVV 147
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A
{Escherichia coli O127}
Length = 236
Score = 28.4 bits (63), Expect = 2.5
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 51 NGDELSFQPGDIIMVPVKQNAEPGWLAG 78
N + PG + + + P A
Sbjct: 186 NKRHVEPPPGSQLWLGFSAHVLPEKYAD 213
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 28.8 bits (64), Expect = 2.8
Identities = 15/97 (15%), Positives = 24/97 (24%), Gaps = 2/97 (2%)
Query: 150 PSNYVVPYEAQTPAAAVD--PTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTA 207
P+ P AA PATP G + P + A
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61
Query: 208 AQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIM 244
A + + + A T + G ++
Sbjct: 62 TVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVV 98
>3m1u_A Putative gamma-D-glutamyl-L-diamino acid endopept; structural
genomics, joint center for structural genomics; HET: MSE
MES; 1.75A {Desulfovibrio vulgaris}
Length = 434
Score = 28.2 bits (62), Expect = 3.2
Identities = 24/157 (15%), Positives = 38/157 (24%), Gaps = 16/157 (10%)
Query: 59 PGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGE---------VVPEYYIAA 109
G + V A+ WL E GW P + V D+ + +
Sbjct: 158 MGTPVFV-GHATADRAWLYVETAFAAGWMPAADVARVDDAFMTRYESGSLAAILRDDTSL 216
Query: 110 YPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPT 169
D T V+ ++ T + R P + V +
Sbjct: 217 NGADGTHLATAHIG--TVLPLSGASQVGRTVLVPVRA---PEGHAVVVPVLLTSGEAAQK 271
Query: 170 PATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFT 206
P + + GG D SS
Sbjct: 272 PVPLTPGNMAELGNRMMGQPYGWGGLYEDR-DCSSTL 307
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.9 bits (59), Expect = 7.2
Identities = 3/13 (23%), Positives = 6/13 (46%)
Query: 95 CDETGEVVPEYYI 107
C G V+ + +
Sbjct: 45 CALCGLVLSDKLV 57
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.130 0.401
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,565,857
Number of extensions: 268946
Number of successful extensions: 1686
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1018
Number of HSP's successfully gapped: 601
Length of query: 290
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 197
Effective length of database: 4,105,140
Effective search space: 808712580
Effective search space used: 808712580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (25.6 bits)