BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7077
(336 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
G S YRA+Y F +RN DE+SF GDII V K EPGWL G +G GWFP +YVE
Sbjct: 1 GSSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60
Query: 225 --PCDETGEVV 233
P E + V
Sbjct: 61 KMPSSENEKAV 71
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 289 KQNAEPGWLAGELRGQTGWFPESYVE--PCDETGEVV 323
K EPGWL G +G GWFP +YVE P E + V
Sbjct: 35 KTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENEKAV 71
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTARF 163
YIA YPY S EPGDLTF + E I VT+K+ +WWTG+IGDR+ F
Sbjct: 11 YIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIF 54
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
Y A+Y + S +L+F G+ I+V K W G + ++G FP +YV+P D
Sbjct: 9 EEYIALYPYSSVEPGDLTFTEGEEILVTQKDGE---WWTGSIGDRSGIFPSNYVKPKD 63
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
+A Y+F +R+ ELS + GDII + + + + GW GE+ G+ GWFP +YVE
Sbjct: 9 KARYDFCARDRSELSLKEGDIIKI-LNKKGQQGWWRGEIYGRIGWFPSNYVE 59
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 288 VKQNAEPGWLAGELRGQTGWFPESYVE 314
+ + + GW GE+ G+ GWFP +YVE
Sbjct: 33 LNKKGQQGWWRGEIYGRIGWFPSNYVE 59
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
RA + F N DELSF GD+I V + E GW G L G+TGWFP +YV
Sbjct: 12 RAKFNFQQTNEDELSFSKGDVIHV--TRVEEGGWWEGTLNGRTGWFPSNYV 60
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYV 313
G V+ V + E GW G L G+TGWFP +YV
Sbjct: 30 GDVIHVTRVEEGGWWEGTLNGRTGWFPSNYV 60
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 122 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTARF 163
A + + T +L+F++ +VI+VT+ +E WW GT+ RT F
Sbjct: 13 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWF 55
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
+A+Y++ ++ GDEL+F+ GD I+V K A GW GEL G+ GW P +YV+
Sbjct: 8 KALYDYDAQTGDELTFKEGDTIIVHQKDPA--GWWEGELNGKRGWVPANYVQ 57
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G + V Q GW GEL G+ GW P +YV+
Sbjct: 26 GDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 57
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
+A+Y++ ++ GDEL+F+ GD I+V K A GW GEL G+ GW P +YV+
Sbjct: 7 KALYDYDAQTGDELTFKEGDTIIVHQKDPA--GWWEGELNGKRGWVPANYVQ 56
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G + V Q GW GEL G+ GW P +YV+
Sbjct: 25 GDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 175 IYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVP 234
+Y++ ++N DEL+F G II V K++ P W GE+ GQ G FP +YV+ T ++ P
Sbjct: 8 MYDYTAQNDDELAFSKGQIINVLNKED--PDWWKGEVSGQVGLFPSNYVKL---TTDMDP 62
Query: 235 GTELPGDKHHLELIA 249
+ D H L+++
Sbjct: 63 SQQWCSDLHLLDMLT 77
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPGTELPGDKHHLE 336
G ++ V +P W GE+ GQ G FP +YV+ T ++ P + D H L+
Sbjct: 24 GQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKL---TTDMDPSQQWCSDLHLLD 74
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
I Y Y + +L F++ ++I V KE+ DWW G + + F
Sbjct: 6 IGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLF 49
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
A Y F +R+ ELS + GD++ + + + GW GE G+ GWFP +YVE
Sbjct: 12 ARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 283 GTVVPV--KQNAEPGWLAGELRGQTGWFPESYVE 314
G VV + + + GW GE G+ GWFP +YVE
Sbjct: 29 GDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
S RR +A+ +F + DEL F+ DII + + Q E W+ GEL G GWFP +VE
Sbjct: 5 SSGRRAKALLDFERHDDDELGFRKNDIITI-ISQKDEHCWV-GELNGLRGWFPAKFVEVL 62
Query: 227 DE 228
DE
Sbjct: 63 DE 64
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 288 VKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
+ Q E W+ GEL G GWFP +VE DE
Sbjct: 35 ISQKDEHCWV-GELNGLRGWFPAKFVEVLDE 64
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
S R +A+Y F +R DEL+ + GDI+++ K+ E GW G L G+ G FP +YVE
Sbjct: 5 SSGRLCKALYSFQARQDDELNLEKGDIVIIHEKK--EEGWWFGSLNGKKGHFPAAYVE 60
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G +V + + E GW G L G+ G FP +YVE
Sbjct: 29 GDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVE 60
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
RA + F N DELSF GD+I V + E GW G G+TGWFP +YV
Sbjct: 10 RAKFNFQQTNEDELSFSKGDVIHV--TRVEEGGWWEGTHNGRTGWFPSNYV 58
Score = 35.8 bits (81), Expect = 0.033, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYV 313
G V+ V + E GW G G+TGWFP +YV
Sbjct: 28 GDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
Score = 34.3 bits (77), Expect = 0.094, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 122 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTARF 163
A + + T +L+F++ +VI+VT+ +E WW GT RT F
Sbjct: 11 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWF 53
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
RA + F N DELSF GD+I V + E GW G G+TGWFP +YV
Sbjct: 8 RAKFNFQQTNEDELSFSKGDVIHVTRVE--EGGWWEGTHNGRTGWFPSNYV 56
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYV 313
G V+ V + E GW G G+TGWFP +YV
Sbjct: 26 GDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 122 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTARF 163
A + + T +L+F++ +VI+VT+ +E WW GT RT F
Sbjct: 9 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWF 51
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
RA + F N DELSF GD+I V + E GW G G+TGWFP +YV
Sbjct: 10 RAKFNFQQTNEDELSFSKGDVIHVTRVE--EGGWWEGTHNGRTGWFPSNYV 58
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYV 313
G V+ V + E GW G G+TGWFP +YV
Sbjct: 28 GDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 122 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTARF 163
A + + T +L+F++ +VI+VT+ +E WW GT RT F
Sbjct: 11 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWF 53
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 22/143 (15%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGE 231
YRAI ++ +G E++ GD+ V V + +E GW +++ + GW P S++EP D E
Sbjct: 14 YRAIADYEKTSGSEMALSTGDV--VEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDE 71
Query: 232 VVPGTELPGDKHHLELIAEVPENISDSGGSGIAVEEGPGIPADIPSPIMGLGTVVPVKQN 291
TE P + +G +A++ + D S + G V V
Sbjct: 72 ----TEDPEPNY--------------AGEPYVAIKAYTAVEGDEVSLLE--GEAVEVIHK 111
Query: 292 AEPGWLAGELRGQTGWFPESYVE 314
GW TG+FP Y++
Sbjct: 112 LLDGWWVIRKDDVTGYFPSMYLQ 134
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 280 MGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV 322
+ G VV V + +E GW +++ + GW P S++EP D E
Sbjct: 30 LSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDET 72
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 169 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
+R+ +A+Y + + ELSF G + V + EPGWL G L G+TG PE+YVE
Sbjct: 10 FRKAKALYACKAEHDSELSFTAG-TVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 64
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 283 GTVV-PVKQNAEPGWLAGELRGQTGWFPESYVE 314
GTV V + EPGWL G L G+TG PE+YVE
Sbjct: 32 GTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 64
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
G EY R ++ + N DEL+F+ G+II + K+ E GW GEL G+ G FP+++
Sbjct: 4 GAKEY--CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFA 60
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 114 MMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTARF 163
M + +Y +PY T +LTF + E+I++ KE WW G + + F
Sbjct: 3 MGAKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVF 55
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 289 KQNAEPGWLAGELRGQTGWFPESYV 313
K+ E GW GEL G+ G FP+++
Sbjct: 36 KETGEAGWWKGELNGKEGVFPDNFA 60
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 48.5 bits (114), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAG--ELRGQTGWFPESYVE 224
+RYRA+Y++ + + DE+SFQ GD I V V+Q + GW+ G E G TG P +YVE
Sbjct: 4 KRYRAVYDYSAADEDEVSFQDGDTI-VNVQQ-IDDGWMYGTVERTGDTGMLPANYVE 58
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 22/143 (15%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGE 231
YRAI ++ +G E++ GD+ V V + +E GW +++ + GW P S++EP D E
Sbjct: 14 YRAIADYEKTSGSEMALSTGDV--VEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDE 71
Query: 232 VVPGTELPGDKHHLELIAEVPENISDSGGSGIAVEEGPGIPADIPSPIMGLGTVVPVKQN 291
TE P + +G +A++ + D S + G V V
Sbjct: 72 ----TEDPEPNY--------------AGEPYVAIKAYTAVEGDEVSLLE--GEAVEVIHK 111
Query: 292 AEPGWLAGELRGQTGWFPESYVE 314
GW TG+FP Y++
Sbjct: 112 LLDGWWVIRKDDVTGYFPSMYLQ 134
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 280 MGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV 322
+ G VV V + +E GW +++ + GW P S++EP D E
Sbjct: 30 LSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDET 72
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 22/145 (15%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
+ YRAI ++ +G E++ GD+ V V + +E GW +++ + GW P S++EP D
Sbjct: 11 QTYRAIADYEKTSGSEMALSTGDV--VEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSP 68
Query: 230 GEVVPGTELPGDKHHLELIAEVPENISDSGGSGIAVEEGPGIPADIPSPIMGLGTVVPVK 289
E TE P + +G +A++ + D S + G V V
Sbjct: 69 DE----TEDPEPNY--------------AGEPYVAIKAYTAVEGDEVSLLE--GEAVEVI 108
Query: 290 QNAEPGWLAGELRGQTGWFPESYVE 314
GW TG+FP Y++
Sbjct: 109 HKLLDGWWVIRKDDVTGYFPSMYLQ 133
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 280 MGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGE 321
+ G VV V + +E GW +++ + GW P S++EP D E
Sbjct: 29 LSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDE 70
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
A+Y++ + N DELSF G +I V K + P W GE+ G TG FP +YV+
Sbjct: 23 AMYDYAANNEDELSFSKGQLINVMNKDD--PDWWQGEINGVTGLFPSNYVK 71
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
IA Y Y + +L+F++ ++I V K++ DWW G I T F
Sbjct: 22 IAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLF 65
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 253 ENISDSGGSGIAVEEGPGIPADIPSPIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESY 312
EN+ G IA+ + D S G ++ V +P W GE+ G TG FP +Y
Sbjct: 12 ENLYFQGCQVIAMYDYAANNEDELS--FSKGQLINVMNKDDPDWWQGEINGVTGLFPSNY 69
Query: 313 VE 314
V+
Sbjct: 70 VK 71
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
+A + F N DELS GDII V + E GW G L G+TGWFP +YV
Sbjct: 14 KARFNFKQTNEDELSVCKGDIIYVT--RVEEGGWWEGTLNGRTGWFPSNYV 62
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYV 313
G ++ V + E GW G L G+TGWFP +YV
Sbjct: 32 GDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 122 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTARF 163
A + + T +L+ + ++IYVT+ +E WW GT+ RT F
Sbjct: 15 ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWF 57
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 22/145 (15%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
+ YRAI ++ +G E++ GD+ V V + +E GW +++ + GW P S++EP D
Sbjct: 12 QTYRAIADYEKTSGSEMALSTGDV--VEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSP 69
Query: 230 GEVVPGTELPGDKHHLELIAEVPENISDSGGSGIAVEEGPGIPADIPSPIMGLGTVVPVK 289
E TE P + +G +A++ + D S + G V V
Sbjct: 70 DE----TEDPEPNY--------------AGEPYVAIKAYTAVEGDEVSLLE--GEAVEVI 109
Query: 290 QNAEPGWLAGELRGQTGWFPESYVE 314
GW TG+FP Y++
Sbjct: 110 HKLLDGWWVIRKDDVTGYFPSMYLQ 134
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 280 MGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGE 321
+ G VV V + +E GW +++ + GW P S++EP D E
Sbjct: 30 LSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDE 71
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
G S + YRA+Y++ ++N DEL GDI+ V ++ E GW E GQ G+ P SY+E
Sbjct: 4 GSSGAQEYRALYDYTAQNPDELDLSAGDILEVILE--GEDGWWTVERNGQRGFVPGSYLE 61
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
A+Y F + +L+FQ GD I V K ++ W G+LRGQTG FP +YV
Sbjct: 22 ALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYV 71
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 122 AAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTARF 163
A Y ++ +PGDL F + I V K + DWW G + +T F
Sbjct: 22 ALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIF 66
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 285 VVPVKQNAEPGWLAGELRGQTGWFPESYV 313
V K ++ W G+LRGQTG FP +YV
Sbjct: 43 TVISKTDSHFDWWEGKLRGQTGIFPANYV 71
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
A+Y++ + N DELSF G +I V K +P W GE+ G TG FP +YV+
Sbjct: 39 AMYDYAANNEDELSFSKGQLINVMNKD--DPDWWQGEINGVTGLFPSNYVK 87
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
IA Y Y + +L+F++ ++I V K++ DWW G I T F
Sbjct: 38 IAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLF 81
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G ++ V +P W GE+ G TG FP +YV+
Sbjct: 56 GQLINVMNKDDPDWWQGEINGVTGLFPSNYVK 87
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
+A+++F + EL F+ GD I V N++P W G GQTG FP +YV P +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHV--MDNSDPNWWKGACHGQTGMFPRNYVTPVN 58
Score = 38.1 bits (87), Expect = 0.006, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 317
G + V N++P W G GQTG FP +YV P +
Sbjct: 24 GDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVN 58
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
+A+++F + EL F+ GD I V N++P W G GQTG FP +YV P +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHV--MDNSDPNWWKGACHGQTGMFPRNYVTPVN 58
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 317
G + V N++P W G GQTG FP +YV P +
Sbjct: 24 GDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVN 58
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
S+ R+ + ++E++ +N DEL + GDII + + E GW +G L + G FP ++V+
Sbjct: 5 SKKRQCKVLFEYIPQNEDELELKVGDII--DINEEVEEGWWSGTLNNKLGLFPSNFVKEL 62
Query: 227 DET 229
+ T
Sbjct: 63 EVT 65
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 271 IPADIPSPIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
IP + + +G ++ + + E GW +G L + G FP ++V+ + T
Sbjct: 17 IPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEVT 65
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 10/65 (15%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEP---GWLAGELR--GQTGWFP 219
++ R YRA+Y++ +++ DE+SF+ GD I+ N +P GW+ G ++ G+TG P
Sbjct: 2 AMANLRTYRAMYDYSAQDEDEVSFRDGDYIV-----NVQPIDDGWMYGTVQRTGRTGMLP 56
Query: 220 ESYVE 224
+Y+E
Sbjct: 57 ANYIE 61
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
AIY++ DELSFQ G II V +K+N + GW G + G TG FP +YVE
Sbjct: 22 AIYDYTKDKEDELSFQEGAIIYV-IKKN-DDGWYEGVMNGVTGLFPGNYVE 70
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTARFRG 165
+A Y Y + +L+F + +IYV KK +D W+ G + T F G
Sbjct: 21 VAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPG 66
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G ++ V + + GW G + G TG FP +YVE
Sbjct: 39 GAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVE 70
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
+A+++F + EL F+ GD I V N++P W G GQTG FP +YV P +
Sbjct: 162 QALFDFDPQEDGELGFRRGDFIHV--MDNSDPNWWKGACHGQTGMFPRNYVTPVNRN 216
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
A Y+F + DELSF+ GDI+ V + + + W EL G+ G+ P++Y+E
Sbjct: 5 AKYDFKATADDELSFKRGDILKV-LNEECDQNWYKAELNGKDGFIPKNYIE 54
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
G + V N++P W G GQTG FP +YV P +
Sbjct: 180 GDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRN 216
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
+A+++F + EL F+ GD I V N++P W G GQTG FP +YV P +
Sbjct: 4 QALFDFDPQEDGELGFRRGDFIHV--MDNSDPNWWKGACHGQTGMFPRNYVTPVN 56
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 317
G + V N++P W G GQTG FP +YV P +
Sbjct: 22 GDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVN 56
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 45.8 bits (107), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 168 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
++ R A+++F + EL+F+ GD+I + + N + WL G +RG TG FP S+V+
Sbjct: 3 KHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKD--WLEGTVRGATGIFPLSFVK 57
Score = 29.6 bits (65), Expect = 2.3, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G V+ + WL G +RG TG FP S+V+
Sbjct: 26 GDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 57
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
RA+Y+F N EL F+ GDII + + W G L GQ+G+FP +YVE
Sbjct: 15 RALYDFEPENEGELGFKEGDIITL--TNQIDENWYEGMLHGQSGFFPINYVE 64
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G ++ + + W G L GQ+G+FP +YVE
Sbjct: 33 GDIITLTNQIDENWYEGMLHGQSGFFPINYVE 64
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
+ I+ + ++N DEL+ + GDI+ + K + GW GEL G+ G FP+++V+
Sbjct: 6 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 57
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 289 KQNAEPGWLAGELRGQTGWFPESYVE 314
K + GW GEL G+ G FP+++V+
Sbjct: 32 KDCIDVGWWEGELNGRRGVFPDNFVK 57
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
R RA+Y+F + DEL F+ G++ V V ++ P W G L + G FP +YV P
Sbjct: 4 RWARALYDFEALEEDELGFRSGEV--VEVLDSSNPSWWTGRLHNKLGLFPANYVAP 57
Score = 33.5 bits (75), Expect = 0.15, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
G VV V ++ P W G L + G FP +YV P
Sbjct: 25 GEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 57
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
+A+Y + ++ + L+F D+I V +Q+ W GE++GQ GWFP+SYV+
Sbjct: 16 QALYPWRAKKDNHLNFNKNDVITVLEQQDM---WWFGEVQGQKGWFPKSYVK 64
Score = 35.0 bits (79), Expect = 0.067, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 296 WLAGELRGQTGWFPESYVE 314
W GE++GQ GWFP+SYV+
Sbjct: 46 WWFGEVQGQKGWFPKSYVK 64
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 122 AAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTARF 163
A YP+ + + L FN+++VI V ++++ WW G + + F
Sbjct: 17 ALYPWRAKKDNHLNFNKNDVITVLEQQDMWWFGEVQGQKGWF 58
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
R RA+Y+F + DEL F+ G++ V V ++ P W G L + G FP +YV P
Sbjct: 2 RWARALYDFEALEEDELGFRSGEV--VEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55
Score = 33.5 bits (75), Expect = 0.16, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
G VV V ++ P W G L + G FP +YV P
Sbjct: 23 GEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 168 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
E R+ RAIY+F + +EL+F+ G+II V +++P W GE G FP ++V
Sbjct: 16 EARKVRAIYDFEAAEDNELTFKAGEIIT--VLDDSDPNWWKGETHQGIGLFPSNFV 69
Score = 27.7 bits (60), Expect = 8.9, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYV 313
G ++ V +++P W GE G FP ++V
Sbjct: 39 GEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
Score = 27.7 bits (60), Expect = 9.8, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 122 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTG 154
A Y +++ E +LTF E+I V + +WW G
Sbjct: 22 AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKG 55
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
R A+++F + EL+F+ GD+I + + N + WL G +RG TG FP S+V+
Sbjct: 20 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKD--WLEGTVRGATGIFPLSFVK 71
Score = 29.6 bits (65), Expect = 2.3, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G V+ + WL G +RG TG FP S+V+
Sbjct: 40 GDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 71
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
+ A++ + + ++L FQ GDII+V K N E WL GE +G+ G FP+ +VE
Sbjct: 7 QVEALFSYEATQPEDLEFQEGDIILVLSKVNEE--WLEGESKGKVGIFPKVFVE 58
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G ++ V WL GE +G+ G FP+ +VE
Sbjct: 27 GDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 45.1 bits (105), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 225
Y+A+Y ++ +N DEL + GDI V V + + GW G R Q G FP +YV+P
Sbjct: 9 YQALYSYIPQNDDELELRDGDI--VDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
+ I+ + ++N DEL+ + GDI+ + K + GW GEL G+ G FP+++V+
Sbjct: 11 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 62
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 289 KQNAEPGWLAGELRGQTGWFPESYVE 314
K + GW GEL G+ G FP+++V+
Sbjct: 37 KDCIDVGWWEGELNGRRGVFPDNFVK 62
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
+ I+ + ++N DEL+ + GDI+ + K + GW GEL G+ G FP+++V+
Sbjct: 13 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 64
Score = 28.1 bits (61), Expect = 7.4, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 295 GWLAGELRGQTGWFPESYVE 314
GW GEL G+ G FP+++V+
Sbjct: 45 GWWEGELNGRRGVFPDNFVK 64
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
+ I+ + ++N DEL+ + GDI+ + K + GW GEL G+ G FP+++V+
Sbjct: 7 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 58
Score = 28.1 bits (61), Expect = 7.4, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 295 GWLAGELRGQTGWFPESYVE 314
GW GEL G+ G FP+++V+
Sbjct: 39 GWWEGELNGRRGVFPDNFVK 58
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 4/55 (7%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVE 224
+RA+Y++++ + DE+SF+ GD I+ Q + GW+ G ++ G+TG P +YVE
Sbjct: 6 FRAMYDYMAADADEVSFKDGDAII--NVQAIDEGWMYGTVQRTGRTGMLPANYVE 58
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
R RA+Y+F + DEL F+ G++ V V ++ P W G L + G FP +YV P
Sbjct: 6 RWARALYDFEALEEDELGFRSGEV--VEVLDSSNPSWWTGRLHNKLGLFPANYVAP 59
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
G VV V ++ P W G L + G FP +YV P
Sbjct: 27 GEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 59
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 225
Y+A+Y ++ +N DEL + GDI V V + + GW G R Q G FP +YV+P
Sbjct: 9 YQALYSYIPQNDDELELRDGDI--VDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVE 224
R RA+Y++ + DELSF+ GD + ++ E GW G L GQ G +P +YVE
Sbjct: 430 RVRALYDYEGQEHDELSFKAGDEL-TKMEDEDEQGWCKGRLDNGQVGLYPANYVE 483
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
AIY + ++ DE+S PGDII V ++ + GW GE G G FP SY +
Sbjct: 4 EAIYAYEAQGDDEISIDPGDIITV-IRGDDGSGWTYGECDGLKGLFPTSYCK 54
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 44.7 bits (104), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
R+ + ++E++ +N DEL + GDII + + E GW +G L + G FP ++V+
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDII--DINEEVEEGWWSGTLNNKLGLFPSNFVK 54
Score = 31.2 bits (69), Expect = 0.78, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 271 IPADIPSPIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
IP + + +G ++ + + E GW +G L + G FP ++V+
Sbjct: 11 IPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
R A+++F + EL+F+ GD+I + + N + WL G +RG TG FP S+V+
Sbjct: 176 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKD--WLEGTVRGATGIFPLSFVK 227
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G V+ + WL G +RG TG FP S+V+
Sbjct: 196 GDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 227
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 44.7 bits (104), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
+A+Y + +++ DELSF DII + +K++ GW G LRG+ G FP +YV
Sbjct: 9 KALYAYDAQDTDELSFNANDIIDI-IKEDPS-GWWTGRLRGKQGLFPNNYV 57
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 122 AAYPYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRTARF 163
A Y YD+ + +L+FN +++I + K++ + WWTG + + F
Sbjct: 10 ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLF 52
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 285 VVPVKQNAEPGWLAGELRGQTGWFPESYV 313
++ + + GW G LRG+ G FP +YV
Sbjct: 29 IIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
RA+Y+F + DEL F+ G++ V V ++ P W G L + G FP +YV P
Sbjct: 6 RALYDFEALEEDELGFRSGEV--VEVLDSSNPSWWTGRLHNKLGLFPANYVAP 56
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
G VV V ++ P W G L + G FP +YV P
Sbjct: 24 GEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 56
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
Length = 72
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
A+Y F + +EL F+ GD I + E GWL G L+G+TG FP +V+ C
Sbjct: 18 ALYRFQALEPNELDFEVGDKIRILA--TLEDGWLEGSLKGRTGIFPYRFVKLC 68
Score = 34.7 bits (78), Expect = 0.080, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 282 LGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 316
+G + + E GWL G L+G+TG FP +V+ C
Sbjct: 34 VGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLC 68
Score = 28.5 bits (62), Expect = 5.0, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 119 YYIAAYPYDSTEPGDLTFN-QDEVIYVTKKENDWWTGTIGDRTARF 163
Y +A Y + + EP +L F D++ + E+ W G++ RT F
Sbjct: 15 YGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIF 60
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
+A+Y+F N EL F+ GD+I + + W G L GQ+G+FP SYV+
Sbjct: 17 KALYDFEPENDGELGFREGDLITL--TNQIDENWYEGXLHGQSGFFPLSYVQ 66
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G ++ + + W G L GQ+G+FP SYV+
Sbjct: 35 GDLITLTNQIDENWYEGXLHGQSGFFPLSYVQ 66
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
+A+++F + EL F+ GD I V N++P W G GQTG FP +YV
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHV--MDNSDPNWWKGACHGQTGMFPRNYV 54
Score = 35.4 bits (80), Expect = 0.049, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYV 313
G + V N++P W G GQTG FP +YV
Sbjct: 24 GDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
RA+Y+F N EL F+ GDII + + W G L G +G+FP +YVE
Sbjct: 11 RALYDFEPENEGELGFKEGDIIT--LTNQIDENWYEGMLHGHSGFFPINYVE 60
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G ++ + + W G L G +G+FP +YVE
Sbjct: 29 GDIITLTNQIDENWYEGMLHGHSGFFPINYVE 60
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
A+Y F +L F+ GD+I + K +++ W G + G+ G FP +YVE
Sbjct: 8 ALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 58
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTARF 163
+A Y + E GDL F + +VI + KK +NDWWTG + R F
Sbjct: 7 VALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIF 52
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
A Y+F + DELSF+ GDI+ V + + + W EL G+ G+ P++Y+E
Sbjct: 14 AKYDFKATADDELSFKRGDILKV-LNEECDQNWYKAELNGKDGFIPKNYIE 63
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of
Cd2ap
Length = 57
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
Y Y++ + + DEL+ + G+II VK+ E GWL GEL G+ G FP+++V+
Sbjct: 3 YIVEYDYDAVHDDELTIRVGEIIR-NVKKLQEEGWLEGELNGRRGMFPDNFVK 54
Score = 34.7 bits (78), Expect = 0.071, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 288 VKQNAEPGWLAGELRGQTGWFPESYVE 314
VK+ E GWL GEL G+ G FP+++V+
Sbjct: 28 VKKLQEEGWLEGELNGRRGMFPDNFVK 54
Score = 28.5 bits (62), Expect = 5.2, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTARF 163
YI Y YD+ +LT E+I KK E W G + R F
Sbjct: 3 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMF 48
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVE 224
R RA+Y++ + DELSF+ GD + + + E GW G L GQ G +P +YVE
Sbjct: 5 RVRALYDYDGQEQDELSFKAGD-ELTKLGEEDEQGWCRGRLDSGQLGLYPANYVE 58
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
S RR + + ++ +N DEL + GDII V E GW G L G+TG FP ++++
Sbjct: 5 SSGRRCQVAFSYLPQNDDELELKVGDII--EVVGEVEEGWWEGVLNGKTGMFPSNFIK 60
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 282 LGTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
+G ++ V E GW G L G+TG FP ++++
Sbjct: 28 VGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 60
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
Length = 62
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
Y Y++ + + DEL+ + G+II VK+ E GWL GEL G+ G FP+++V+
Sbjct: 4 YIVEYDYDAVHDDELTIRVGEIIR-NVKKLQEEGWLEGELNGRRGMFPDNFVK 55
Score = 34.7 bits (78), Expect = 0.078, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 288 VKQNAEPGWLAGELRGQTGWFPESYVE 314
VK+ E GWL GEL G+ G FP+++V+
Sbjct: 29 VKKLQEEGWLEGELNGRRGMFPDNFVK 55
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTARF 163
YI Y YD+ +LT E+I KK E W G + R F
Sbjct: 4 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMF 49
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
+RA+Y F R DEL F+ GDII + ++ W G +G+TG P +YV
Sbjct: 6 FRALYTFEPRTPDELYFEEGDIIY--ITDMSDTNWWKGTSKGRTGLIPSNYV 55
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTA 161
K + A Y ++ P +L F + ++IY+T + +WW GT RT
Sbjct: 4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTG 48
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 42.4 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 168 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
E + +A+++F + EL+F+ GD+I + K +P W G+L + G FP +YV P
Sbjct: 3 ETKFVQALFDFNPQESGELAFKRGDVITLINKD--DPNWWEGQLNNRRGIFPSNYVAP 58
Score = 31.6 bits (70), Expect = 0.67, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
G V+ + +P W G+L + G FP +YV P
Sbjct: 26 GDVITLINKDDPNWWEGQLNNRRGIFPSNYVAP 58
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 10/70 (14%)
Query: 168 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
E + +A+ + ++ + L+F DII V +Q W GE+ G GWFP+SYV
Sbjct: 9 ENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQE---NWWFGEVHGGRGWFPKSYV---- 61
Query: 228 ETGEVVPGTE 237
+++PG+E
Sbjct: 62 ---KIIPGSE 68
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 11/44 (25%)
Query: 284 TVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPGTE 327
TV+ ++N W GE+ G GWFP+SYV +++PG+E
Sbjct: 36 TVLEQQEN----WWFGEVHGGRGWFPKSYV-------KIIPGSE 68
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
+RA+Y F R DEL F+ GDII + ++ W G +G+TG P +YV
Sbjct: 10 FRALYTFEPRTPDELYFEEGDIIY--ITDMSDTNWWKGTSKGRTGLIPSNYV 59
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTA 161
S K + A Y ++ P +L F + ++IY+T + +WW GT RT
Sbjct: 6 SGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTG 52
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 168 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
+ + +RA+Y F R DEL + GDII + ++ W G +G+TG P +YV
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGDIIYIT--DXSDTNWWKGTSKGRTGLIPSNYV 66
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVT-KKENDWWTGTIGDRT 160
K + A Y ++ P +L + ++IY+T + +WW GT RT
Sbjct: 15 KVFRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRT 58
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
A+Y F +L+F+ GD+I + K +++ W G G+ G FP +YV
Sbjct: 8 ALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 57
Score = 41.2 bits (95), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTARF 163
+A Y + +PGDL F + +VI + KK +NDWWTG + F
Sbjct: 7 VALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIF 52
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
R +Y+F N EL F+ GDII + + W G + G++G+FP +YVE
Sbjct: 7 RGLYDFEPENQGELGFKEGDIITL--TNQIDENWYEGMIHGESGFFPINYVE 56
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G ++ + + W G + G++G+FP +YVE
Sbjct: 25 GDIITLTNQIDENWYEGMIHGESGFFPINYVE 56
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 168 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
E + +A+++F + EL+F+ GD+I + K +P W G+L + G FP +YV P
Sbjct: 1 ETKFVQALFDFNPQESGELAFKRGDVITLINKD--DPNWWEGQLNNRRGIFPSNYVCP 56
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
G V+ + +P W G+L + G FP +YV P
Sbjct: 24 GDVITLINKDDPNWWEGQLNNRRGIFPSNYVCP 56
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 168 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
E + +A+++F + EL+F+ GD+I + K +P W G+L + G FP +YV P
Sbjct: 1 ETKFVQALFDFNPQESGELAFKRGDVITLINKD--DPNWWEGQLNNRRGIFPSNYVCP 56
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
G V+ + +P W G+L + G FP +YV P
Sbjct: 24 GDVITLINKDDPNWWEGQLNNRRGIFPSNYVCP 56
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
A +F + DELSF+ GDI+ V + + ++ W EL G+ G+ P++Y+E
Sbjct: 5 AKVDFKATADDELSFKRGDILKV-LNEESDQNWYKAELNGKDGFIPKNYIE 54
>pdb|1X6B|A Chain A, Solution Structures Of The Sh3 Domain Of Human Rho Guanine
Exchange Factor (Gef) 16
Length = 79
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 178 FVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LR-GQTGWFPESYV 223
F ++ DE++ Q D+++V E GWL GE LR G+TGWFPE +
Sbjct: 26 FFAKQADEVTLQQADVVLVL---QQEDGWLYGERLRDGETGWFPEDFA 70
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 285 VVPVKQNAEPGWLAGE-LR-GQTGWFPESYV 313
VV V Q E GWL GE LR G+TGWFPE +
Sbjct: 41 VVLVLQQ-EDGWLYGERLRDGETGWFPEDFA 70
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P D
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWW 152
++A Y Y+S DL+F + E + V E DWW
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWW 38
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 296 WLAGELR-GQTGWFPESYVEPCD 317
WLA L GQTG+ P +YV P D
Sbjct: 38 WLAHSLSTGQTGYIPSNYVAPSD 60
>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell
Receptor Signaling 1
Length = 94
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 159 RTARFRGVSEYRRYRAIYEFVSRNGDELSFQPGD-IIMVPVKQNA-EPGWLAGE--LRGQ 214
R RF + + + IY + +N DEL PGD I M P++Q + GW+ G G
Sbjct: 9 RDIRF---ANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGC 65
Query: 215 TGWFPESYVEPCDE 228
+G PE+Y+ DE
Sbjct: 66 SGLLPENYITKADE 79
>pdb|1WXU|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Peroxisomal
Biogenesis Factor 13
Length = 93
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 5/56 (8%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEP---GWLAGELRGQ-TGWFPESYVE 224
RA Y+FV+ + +E+SF+ GD++ + +K+ +P GWL L GQ TG P +YV+
Sbjct: 21 RAEYDFVAVSDEEISFRAGDMLNLALKEQ-QPKVRGWLLASLDGQTTGLIPANYVK 75
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
RR RA+Y+F + +EL+F+ G++I V +++ W GE TG FP ++V
Sbjct: 6 RRVRALYDFEAVEDNELTFKHGELIT--VLDDSDANWWQGENHRGTGLFPSNFV 57
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
A+Y++ + DEL+ GDII V K N E W +GQ G+FP ++V
Sbjct: 11 ALYDYTANRSDELTIHRGDIIRVFFKDN-EDWWYGSIGKGQEGYFPANHV 59
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIG 157
+A Y Y + +LT ++ ++I V K+N DWW G+IG
Sbjct: 10 VALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIG 47
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQ---TGWFPESYV 223
++ RR + IY+ + N DEL+F G++I+V +++ E W G + GQ G FP S+V
Sbjct: 8 NKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQE--WWIGHIEGQPERKGVFPVSFV 65
Query: 224 EPCDETG 230
++G
Sbjct: 66 HILSDSG 72
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
R ++F +++ EL+ Q GDI+ + + + WL GE G+ G FP +YVE
Sbjct: 5 RLKFDFQAQSPKELTLQKGDIVYI--HKEVDKNWLEGEHHGRLGIFPANYVE 54
Score = 32.3 bits (72), Expect = 0.43, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G +V + + + WL GE G+ G FP +YVE
Sbjct: 23 GDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 54
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
Y A+Y+FV + ++L +PGDII + N + W G+++ + G+FP ++V+
Sbjct: 10 YVALYKFVPQENEDLEMRPGDIITLLEDSNED--WWKGKIQDRIGFFPANFVQ 60
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
S Y+A Y + E DL ++I + + N DWW G I DR F
Sbjct: 6 SGNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFF 54
>pdb|2DLP|A Chain A, Solution Structure Of The Sh3 Domain Of Human Kiaa1783
Protein
Length = 85
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
A+ +++ N LSF GD+I + EPGW G G++G FP V+P
Sbjct: 13 ALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQP 64
Score = 29.3 bits (64), Expect = 2.9, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 293 EPGWLAGELRGQTGWFPESYVEP 315
EPGW G G++G FP V+P
Sbjct: 42 EPGWQFGSAGGRSGLFPADIVQP 64
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 164 RGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
RG RR + + ++ +N DEL + GDII V E GW G L G+TG FP +++
Sbjct: 13 RGERRRRRCQVAFSYLPQNDDELELKVGDII--EVVGEVEEGWWEGVLNGKTGMFPSNFI 70
Query: 224 E 224
+
Sbjct: 71 K 71
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 271 IPADIPSPIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
+P + + +G ++ V E GW G L G+TG FP ++++
Sbjct: 28 LPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 71
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P D
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWW 152
++A Y Y+S DL+F + E + V E DWW
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWW 38
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 296 WLAGELR-GQTGWFPESYVEPCD 317
WLA L GQTG+ P +YV P D
Sbjct: 38 WLAHSLSTGQTGYIPSNYVAPSD 60
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P D
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWW 152
++A Y Y+S DL+F + E + V E DWW
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWW 38
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 296 WLAGELR-GQTGWFPESYVEPCD 317
WLA L GQTG+ P +YV P D
Sbjct: 38 WLAHSLSTGQTGYIPSNYVAPSD 60
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P D
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWW 152
++A Y Y+S DL+F + E + V E DWW
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWW 38
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 296 WLAGELR-GQTGWFPESYVEPCD 317
WLA L GQTG+ P +YV P D
Sbjct: 38 WLAHSLSTGQTGYIPSNYVAPSD 60
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P D
Sbjct: 88 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 143
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWW 152
++A Y Y+S DL+F + E + V E DWW
Sbjct: 88 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWW 121
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 296 WLAGELR-GQTGWFPESYVEPCD 317
WLA L GQTG+ P +YV P D
Sbjct: 121 WLAHSLSTGQTGYIPSNYVAPSD 143
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
R ++F +++ EL+ Q GDI+ + + + WL GE G+ G FP +YVE
Sbjct: 11 RLKFDFQAQSPKELTLQKGDIVYI--HKEVDKNWLEGEHHGRLGIFPANYVE 60
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 258 SGGSGIAVEEGPGIPADIPSPI-MGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
SG SG A A P + + G +V + + + WL GE G+ G FP +YVE
Sbjct: 3 SGSSGKAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 60
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 225
YRA+Y++ +N DEL + GD V V Q + GW G R + G FP +YV P
Sbjct: 10 YRAMYQYRPQNEDELELREGD--RVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P D
Sbjct: 6 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLTTGQTGYIPSNYVAPSD 61
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWW 152
++A Y Y+S DL+F + E + V E DWW
Sbjct: 6 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWW 39
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
A+Y++ + DE+SF P DII + + GW G +G+ G FP +YVE
Sbjct: 14 ALYDYQAAGDDEISFDPDDIIT--NIEMIDDGWWRGVCKGRYGLFPANYVE 62
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQ---TGWFPESYV 223
RR + IY+ + N DEL+F G++I+V +++ E W G + GQ G FP S+V
Sbjct: 2 RRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQE--WWIGHIEGQPERKGVFPVSFV 56
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 176 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
+ +V+ DELS G V V + GW G GQ GWFP +YV
Sbjct: 7 FAYVAEREDELSLVKGS--RVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52
Score = 35.4 bits (80), Expect = 0.041, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYV 313
G+ V V + GW G GQ GWFP +YV
Sbjct: 22 GSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
A+Y++ + DE+SF P DII + + GW G +G+ G FP +YVE
Sbjct: 15 ALYDYQAAGDDEISFDPDDIIT--NIEMIDDGWWRGVCKGRYGLFPANYVE 63
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
A+Y++ + DE+SF P DII + + GW G +G+ G FP +YVE
Sbjct: 22 ALYDYQAAGDDEISFDPDDIIT--NIEMIDDGWWRGVCKGRYGLFPANYVE 70
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
A+++ V+ EL+F+ GD+I V N + W G++ + GWFP S+V
Sbjct: 15 AVWDHVTMANRELAFKAGDVIKVLDASNKD--WWWGQIDDEEGWFPASFV 62
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYV 313
G V+ V + W G++ + GWFP S+V
Sbjct: 32 GDVIKVLDASNKDWWWGQIDDEEGWFPASFV 62
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
R+ + ++++ +N DEL GD+I V + E GW +G L + G FP ++V+
Sbjct: 5 RQCKVLFDYSPQNEDELELIVGDVI--DVIEEVEEGWWSGTLNNKLGLFPSNFVK 57
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 282 LGTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
+G V+ V + E GW +G L + G FP ++V+
Sbjct: 25 VGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVK 57
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
R+ RA+Y+F + +EL+F+ G+II+ V +++ W GE G FP ++V
Sbjct: 18 RKVRALYDFEAVEDNELTFKHGEIII--VLDDSDANWWKGENHRGIGLFPSNFV 69
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 122 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTG 154
A Y +++ E +LTF E+I V + +WW G
Sbjct: 22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKG 55
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 176 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
+ +V+ DELS G V V + GW G GQ GWFP +YV
Sbjct: 8 FAYVAEREDELSLVXGS--RVTVXEXCSDGWWRGSYNGQIGWFPSNYV 53
Score = 35.0 bits (79), Expect = 0.057, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYV 313
G+ V V + GW G GQ GWFP +YV
Sbjct: 23 GSRVTVXEXCSDGWWRGSYNGQIGWFPSNYV 53
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
A+Y+F + +L +PGD V + + P W G G+TG FP +YV+P
Sbjct: 7 ALYQFDPQQDGDLGLKPGD--KVQLLEKLSPEWYKGSCNGRTGIFPANYVKP 56
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
G V + + P W G G+TG FP +YV+P
Sbjct: 24 GDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKP 56
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 17/161 (10%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV 232
RA+++F + ++L F+ GDI+ + K E W A ++ G+ G P YVE C +
Sbjct: 5 RALFDFNGNDDEDLPFKKGDILKIRDKPE-EQWWNAEDMDGKRGMIPVPYVEKCRPSSAS 63
Query: 233 VP---------------GTELPGDKHHLELIAEVPENISDSGGSGIAVEEGPGIPADIPS 277
V G PG + +P N+ + +++ D +
Sbjct: 64 VSTLTGGNQDSSHPQPLGGPEPGPYAQPSINTPLP-NLQNGPFYARVIQKRVPNAYDKTA 122
Query: 278 PIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
+ +G +V V + G GE G+ G FP ++V D+
Sbjct: 123 LALEVGELVKVTKINMSGQWEGECNGKRGHFPFTHVRLLDQ 163
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPC 226
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLTTGQTGYIPSNYVAPS 64
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWW 152
++A Y Y+S DL+F + E + V E DWW
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWW 43
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 228
Y A+ +F ++ +L+F+ G+I++V +++ + W+A + +G G P +Y+EP E
Sbjct: 13 YIAVGDFTAQQVGDLTFKKGEILLV-IEKKPDGWWIAKDAKGNEGLVPRTYLEPYSE 68
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WW 152
YIA + + + GDLTF + E++ V +K+ D WW
Sbjct: 13 YIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWW 46
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNA-EPGWLAGELRGQTGWFPESYVE 224
+A+Y++ + DELSF G II + K+N + G+ GE G+ G FP VE
Sbjct: 12 KALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVE 64
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPC 226
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLTTGQTGYIPSNYVAPS 64
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWW 152
++A Y Y+S DL+F + E + V E DWW
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWW 43
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
R +A+ + +N +L F GD+I++ ++ + W GE+ G +G FP S VE
Sbjct: 9 RAKALCNYRGKNPGDLKFNKGDVILL--RRQLDENWYQGEINGVSGIFPASSVE 60
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G V+ +++ + W GE+ G +G FP S VE
Sbjct: 29 GDVILLRRQLDENWYQGEINGVSGIFPASSVE 60
Score = 28.9 bits (63), Expect = 3.9, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 126 YDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARFRGVS 167
Y PGDL FN+ +VI + ++ + +W+ G I + F S
Sbjct: 16 YRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASS 58
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 178 FVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG-----QTGWFPESYVEPCDETGEV 232
+V+ ++LS PG +I++ +K+N GW GEL+ Q GWFP S+V+ + E
Sbjct: 16 YVASGSEQLSLAPGQLILI-LKKNTS-GWWQGELQARGKKRQKGWFPASHVKLLGPSSER 73
Query: 233 VPG 235
G
Sbjct: 74 ASG 76
Score = 28.5 bits (62), Expect = 4.9, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 283 GTVVPVKQNAEPGWLAGELRG-----QTGWFPESYVEPCDETGEVVPG 325
G ++ + + GW GEL+ Q GWFP S+V+ + E G
Sbjct: 29 GQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSERASG 76
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
SE ++ A+Y+++ N ++L + GD + + N P W A + GQ G+ P +YV
Sbjct: 4 STSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNL-PWWRARDKNGQEGYIPSNYVT 62
Query: 225 PCDET 229
+++
Sbjct: 63 EAEDS 67
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
R RA ++F ++ EL Q GDI+ + + + W GE G+ G FP +Y+E
Sbjct: 8 RPARAKFDFKAQTLKELPLQKGDIVYI--YKQIDQNWYEGEHHGRVGIFPRTYIE 60
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G +V + + + W GE G+ G FP +Y+E
Sbjct: 29 GDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
A+++ V+ + EL F+ GD+I V N E W G + GWFP S+V
Sbjct: 72 ALWDHVTXDDQELGFKAGDVIEVXDATNRE--WWWGRVADGEGWFPASFV 119
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 176 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
+ +++ DELS G ++V + GW G GQ GWFP +YV
Sbjct: 11 FNYMAEREDELSLIKGTKVIV--MEKCSDGWWRGSYNGQVGWFPSNYV 56
Score = 36.2 bits (82), Expect = 0.023, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYV 313
GT V V + GW G GQ GWFP +YV
Sbjct: 26 GTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 56
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV-------EPC 226
A+++ V+ + EL F+ GD+I V N E W G + GWFP S+V EP
Sbjct: 41 ALWDHVTMDDQELGFKAGDVIEVMDATNRE--WWWGRVADGEGWFPASFVRLRVNQDEPA 98
Query: 227 DE 228
D+
Sbjct: 99 DD 100
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
A+++ V+ + EL F+ GD+I V N E W G + GWFP S+V
Sbjct: 35 ALWDHVTMDDQELGFKAGDVIEVMDATNRE--WWWGRVADGEGWFPASFV 82
>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3
Domain With Adjacent Proline Rich Region
Length = 80
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 165 GVSEYRRY-RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
G E+ +Y RA+ ++ + L F+ DII + K + E W G+L G+ G FP +V
Sbjct: 5 GSPEFAKYARALKDYNVSDTSLLPFKRNDIITITFK-DQENKWFMGQLNGKEGSFPVDHV 63
Query: 224 E 224
E
Sbjct: 64 E 64
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 176 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
+ +++ DELS G ++V + GW G GQ GWFP +YV
Sbjct: 24 FNYMAEREDELSLIKGTKVIV--MEKCSDGWWRGSYNGQVGWFPSNYV 69
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYV 313
GT V V + GW G GQ GWFP +YV
Sbjct: 39 GTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 69
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPC 226
+ A+Y++ SR +LSF+ G+ + + V WLA L G+TG+ P +YV P
Sbjct: 3 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLTTGRTGYIPSNYVAPS 57
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWW 152
++A Y Y+S DL+F + E + V E DWW
Sbjct: 3 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWW 36
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C
Gamma-1
Length = 61
Score = 36.6 bits (83), Expect = 0.018, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG-WFPESYVE 224
+A++++ ++ DEL+F II KQ+ GW G+ G+ WFP +YVE
Sbjct: 7 KALFDYKAQREDELTFTKSAIIQNVEKQDG--GWWRGDYGGKKQLWFPSNYVE 57
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 227
A+Y++ +R D+LSF G+ + N+ G W A L G+TG+ P +YV P D
Sbjct: 8 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVD 61
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWW 152
++A Y Y++ DL+F++ E + E DWW
Sbjct: 6 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWW 39
>pdb|2DMO|A Chain A, Refined Solution Structure Of The 1st Sh3 Domain From
Human Neutrophil Cytosol Factor 2 (Ncf-2)
Length = 68
Score = 36.6 bits (83), Expect = 0.023, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
+R ++ FV +EL PG+I+ V K N W GQ G P +Y+EP
Sbjct: 10 HRVLFGFVPETKEELQVMPGNIVFVLKKGN--DNWATVMFNGQKGLVPCNYLEP 61
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 227
A+Y++ +R D+LSF G+ + N+ G W A L G+TG+ P +YV P D
Sbjct: 9 ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVD 62
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
G S +Y + + S++ DE+ F+ G + V +++N E GW G+ GW P SY++
Sbjct: 4 GSSGEEKYVTVQPYTSQSKDEIGFEKGVTVEV-IRKNLE-GWWYIRYLGKEGWAPASYLK 61
Query: 225 PCDETG 230
++G
Sbjct: 62 KAKDSG 67
>pdb|1ZUU|A Chain A, Crystal Structure Of The Yeast Bzz1 First Sh3 Domain At
0.97-A Resolution
Length = 58
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW--LAGELRGQTGWFPESYVE 224
+ +Y +V ++ DE++ PGD I + V ++ GW + + G+TG P +Y+
Sbjct: 5 KVLYAYVQKDDDEITITPGDKISL-VARDTGSGWTKINNDTTGETGLVPTTYIR 57
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 160 TARFRGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGEL-RGQTG 216
T R RG + + A+Y++ + D+LSF G+ + N+ G W A L G+TG
Sbjct: 6 TLRTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQI---LNSSEGDWWEARSLTTGETG 62
Query: 217 WFPESYVEPCD 227
+ P +YV P D
Sbjct: 63 YIPSNYVAPVD 73
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWW 152
++A Y Y++ DL+F++ E + E DWW
Sbjct: 18 FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWW 51
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 36.2 bits (82), Expect = 0.027, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG-WFPESYVE 224
+A++++ ++ DEL+F II KQ+ GW G+ G+ WFP +YVE
Sbjct: 10 KALFDYKAQREDELTFTKSAIIQNVEKQDG--GWWRGDYGGKKQLWFPSNYVE 60
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ +R D+LSF G+ + N+ G W A L G+TG+ P +YV P D
Sbjct: 6 FVALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVD 61
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 36.2 bits (82), Expect = 0.028, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
S R+ R +Y++ + N ELS ++I V + WL GE Q G P +Y+E
Sbjct: 15 SNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLE 72
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ +R D+LSF G+ + N+ G W A L G+TG+ P +YV P D
Sbjct: 8 FVALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVD 63
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ +R D+LSF G+ + N+ G W A L G+TG+ P +YV P D
Sbjct: 4 FVALYDYEARTEDDLSFHKGEKFQI---LNSSEGDWWEARSLTTGETGYIPSNYVAPVD 59
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ +R D+LSF G+ + N+ G W A L G+TG+ P +YV P D
Sbjct: 8 FVALYDYEARTEDDLSFHKGEKFQI---LNSSEGDWWEARSLTTGETGYIPSNYVAPVD 63
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 160 TARFRGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWF 218
T R RG + + A+Y++ + D+LSF G+ + + + W A L G+TG+
Sbjct: 6 TLRTRGGTGVTLFVALYDYEAWTEDDLSFHKGEKFQI-LNSSEGDWWEARSLTTGETGYI 64
Query: 219 PESYVEPCD 227
P +YV P D
Sbjct: 65 PSNYVAPVD 73
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ +R D+LSF G+ + + + W A L G+TG+ P +YV P D
Sbjct: 4 FVALYDYEARTEDDLSFHKGEKFQI-LNSSEGDWWEARSLTTGETGYIPSNYVAPVD 59
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ +R D+LSF G+ + + + W A L G+TG+ P +YV P D
Sbjct: 7 FVALYDYEARTEDDLSFHKGEKFQI-LNSSEGDWWEARSLTTGETGYIPSNYVAPVD 62
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 170 RRYRAIYEFVSRNGD-------ELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 222
RR A+Y++ R EL+F GDII V + E G+ GEL GQ G P ++
Sbjct: 8 RRMVALYDYDPRESSPNVDVEAELTFCTGDIITV-FGEIDEDGFYYGELNGQKGLVPSNF 66
Query: 223 VE 224
+E
Sbjct: 67 LE 68
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 35.8 bits (81), Expect = 0.035, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
A ++F + DELSF+ G I+ + + + W EL G+ G P +Y+E
Sbjct: 5 AKHDFSATADDELSFRKGQILKI-LNMEDDSNWYRAELDGKEGLIPSNYIE 54
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With A
Herpesviral Ligand
Length = 65
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW 152
+A YPYD P DL+F + E + V ++ +WW
Sbjct: 11 VALYPYDGIHPDDLSFKKGEKMKVLEEHGEWW 42
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPE---SYVE 224
+R A+Y+F N +EL GDI+ + K GWL E +TG PE SY++
Sbjct: 6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQ--GWLVAENESGSKTGLVPEEFVSYIQ 63
Query: 225 P 225
P
Sbjct: 64 P 64
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 171 RYRAIYEFVS-RNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVE 224
R R +Y F R+G L F G++I + Q + GW GE G GWFP SYV+
Sbjct: 5 RCRTLYPFSGERHGQGLRFAAGELITL--LQVPDGGWWEGEKEDGLRGWFPASYVQ 58
>pdb|2KXC|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Irtks-Sh3
And Espfu- R47 Complex
pdb|2LNH|B Chain B, Enterohaemorrhagic E. Coli (Ehec) Exploits A Tryptophan
Switch To Hijack Host F-Actin Assembly
Length = 67
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 182 NGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCDE 228
N LSF GD+I + + + + GWL GE + GWFP SY + +E
Sbjct: 20 NKTLLSFAQGDVITLLIPEEKD-GWLYGEHDVSKARGWFPSSYTKLLEE 67
>pdb|1RUW|A Chain A, Crystal Structure Of The Sh3 Domain From S. Cerevisiae
Myo3
Length = 69
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 171 RYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGW-LAGELRG-QTGWFPESYVEPCD 227
++ A Y+F S + EL + GDI+ + ++ GW LA L G + GW P +Y+ P
Sbjct: 4 KFEAAYDFPGSGSSSELPLKKGDIVFI--SRDEPSGWSLAKLLDGSKEGWVPTAYMTPYK 61
Query: 228 ETGEVVP 234
+T VP
Sbjct: 62 DTRNTVP 68
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 268 GPGIPADIPSPIMGLGTVVPVKQNAEPGW-LAGELRG-QTGWFPESYVEPCDETGEVVP 324
G G +++P + G +V + ++ GW LA L G + GW P +Y+ P +T VP
Sbjct: 13 GSGSSSELP---LKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVP 68
>pdb|2BTT|A Chain A, Nmr Structure Of Myo3-Sh3 Domain From Myosin-Type I From
S. Cerevisiae
Length = 69
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 171 RYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGW-LAGELRG-QTGWFPESYVEPCD 227
++ A Y+F S + EL + GDI+ + ++ GW LA L G + GW P +Y+ P
Sbjct: 4 KFEAAYDFPGSGSSSELPLKKGDIVFI--SRDEPSGWSLAKLLDGSKEGWVPTAYMTPYK 61
Query: 228 ETGEVVP 234
+T VP
Sbjct: 62 DTRNTVP 68
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 268 GPGIPADIPSPIMGLGTVVPVKQNAEPGW-LAGELRG-QTGWFPESYVEPCDETGEVVP 324
G G +++P + G +V + ++ GW LA L G + GW P +Y+ P +T VP
Sbjct: 13 GSGSSSELP---LKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVP 68
>pdb|1VA7|A Chain A, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|B Chain B, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|C Chain C, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|D Chain D, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
Length = 70
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 171 RYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGW-LAGELRG-QTGWFPESYVEPCD 227
++ A Y+F S + EL + GDI+ + ++ GW LA L G + GW P +Y+ P
Sbjct: 5 KFEAAYDFPGSGSSSELPLKKGDIVFI--SRDEPSGWSLAKLLDGSKEGWVPTAYMTPYK 62
Query: 228 ETGEVVP 234
+T VP
Sbjct: 63 DTRNTVP 69
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 268 GPGIPADIPSPIMGLGTVVPVKQNAEPGW-LAGELRG-QTGWFPESYVEPCDETGEVVP 324
G G +++P + G +V + ++ GW LA L G + GW P +Y+ P +T VP
Sbjct: 14 GSGSSSELP---LKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVP 69
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 35.0 bits (79), Expect = 0.065, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
A + + R ELSF+ GD++ + + A W GE G G P Y+
Sbjct: 15 ACFAYTGRTAQELSFRRGDVLR--LHERASSDWWRGEHNGMRGLIPHKYI 62
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 34.7 bits (78), Expect = 0.069, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 176 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
+++ +++ DEL+ G+II K++ GW G++ G+ G FP+++V
Sbjct: 8 FDYQAQHDDELTISVGEIITNIRKEDG--GWWEGQINGRRGLFPDNFV 53
Score = 27.7 bits (60), Expect = 8.7, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 280 MGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYV 313
+ +G ++ + + GW G++ G+ G FP+++V
Sbjct: 20 ISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYV 223
+R A+Y+F N +EL GDI+ + K GWL E +TG PE +V
Sbjct: 2 QRAVALYDFEPENDNELRLAEGDIVFISYKHG--QGWLVAENESGSKTGLVPEEFV 55
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQN-AEPGWLAGELRGQTGWFPESY 222
A++++ + GDELSF+ G+ + V + E W L GQ G+ P +Y
Sbjct: 159 ALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208
>pdb|1BB9|A Chain A, Crystal Structure Of The Sh3 Domain From Rat Amphiphysin 2
Length = 115
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 13/67 (19%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE---PGWLAG----------ELRGQTGW 217
+ +A +++ + + DEL + GD+++V QN E GWL G EL G
Sbjct: 46 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGV 105
Query: 218 FPESYVE 224
FPE++ E
Sbjct: 106 FPENFTE 112
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase,
20 Structures
Length = 58
Score = 34.7 bits (78), Expect = 0.080, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
++ A+Y+++ N ++L + GD + ++++ P W A + GQ G+ P +YV
Sbjct: 2 KKVVALYDYMPMNANDLQLRKGDEYFI-LEESNLPWWRARDKNGQEGYIPSNYV 54
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGEL-RGQTGWFPESYVEPCD 227
+ A+Y++ +R D+LSF G+ + N+ G W A L G+TG+ P Y+ P D
Sbjct: 8 FEALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSIYLAPVD 63
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 26/169 (15%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE------PC 226
R +Y+F + ++L F+ G+I+++ +++ E W A G+ G P YVE P
Sbjct: 129 RTLYDFPGNDAEDLPFKKGEILVI-IEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPH 187
Query: 227 DETGEVVPGTE-LPGDKHHL---ELIAEVPENISDSGGSGI----AVEEGP----GIPAD 274
+ G + +P H + +P +S S G+ I + + GP I
Sbjct: 188 GKHGNRNSNSYGIPEPAHAYAQPQTTTPLPA-VSGSPGAAITPLPSTQNGPVFAKAIQKR 246
Query: 275 IPSPI------MGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 317
+P + +G +V V + G GE+ G+ G FP ++V+ D
Sbjct: 247 VPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 295
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 26/169 (15%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE------PC 226
R +Y+F + ++L F+ G+I+++ +++ E W A G+ G P YVE P
Sbjct: 129 RTLYDFPGNDAEDLPFKKGEILVI-IEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPH 187
Query: 227 DETGEVVPGTE-LPGDKH---HLELIAEVPENISDSGGSGI----AVEEGP----GIPAD 274
+ G + +P H + +P +S S G+ I + + GP I
Sbjct: 188 GKHGNRNSNSYGIPEPAHAXAQPQTTTPLPA-VSGSPGAAITPLPSTQNGPVFAKAIQKR 246
Query: 275 IPSPI------MGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 317
+P + +G +V V + G GE+ G+ G FP ++V+ D
Sbjct: 247 VPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD 295
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAE--PGWLAGELRGQTGWFP 219
+A+Y+ V+ + DELSF+ GDI+ V ++Q+ + GW L G+ G P
Sbjct: 7 KALYDNVAESPDELSFRKGDIMTV-LEQDTQGLDGWWLCSLHGRQGIVP 54
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 11 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITPVN 65
>pdb|3EG0|A Chain A, Crystal Structure Of The N114t Mutant Of Abl-Sh3 Domain
Length = 63
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 8 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSTYITPVN 62
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCD 227
+ A+Y++ +R ++LSF+ G+ + N E W G+ G+ P +YV P D
Sbjct: 8 FVALYDYEARTTEDLSFKKGE--RFQIINNTEGDWWEARSIATGKNGYIPSNYVAPAD 63
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
A+Y++ ++ DE++ + GDI+ + N + W E+ + G+ P +YV+ D
Sbjct: 11 ALYDYQEKSPDEVTMKKGDILTLLNSTNKD--WWKVEVNDRQGFVPAAYVKKLD 62
>pdb|2O88|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|2O88|B Chain B, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
Length = 58
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 3 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSAYITPVN 57
>pdb|3EG3|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-sh3 Domain
pdb|3EGU|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Length = 63
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 8 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSAYITPVN 62
>pdb|1JU5|C Chain C, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 61
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 228
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 5 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITPVNS 60
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPC 226
+ A+Y++ +R D+LSF G+ + + + W A L G+TG+ P +YV P
Sbjct: 3 FVALYDYEARTEDDLSFHKGEKFQI-LNSSEGDWWEARSLTTGETGYIPSNYVAPV 57
>pdb|1WX6|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck2
Length = 91
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWL-AGELRGQTGWFPESYV 223
+ +Y F S +EL+F+ G+ + V K +P W RGQ G P++YV
Sbjct: 21 QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 72
>pdb|1U5S|A Chain A, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain And
Pinch-1 Lim4 Domain
Length = 71
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWL-AGELRGQTGWFPESYV 223
+ +Y F S +EL+F+ G+ + V K +P W RGQ G P++YV
Sbjct: 10 QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 61
>pdb|1BBZ|A Chain A, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|C Chain C, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|G Chain G, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|E Chain E, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
Length = 58
Score = 33.5 bits (75), Expect = 0.16, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 3 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITPVN 57
>pdb|2FRY|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Nck2
Adaptor Protein
Length = 61
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWL-AGELRGQTGWFPESYV 223
+ +Y F S +EL+F+ G+ + V K +P W RGQ G P++YV
Sbjct: 6 QTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 57
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR
RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR----GQTGWFPESYVEPCD 227
+ A+Y++ +R D+LSF G+ + ++E W E+R G+TG+ P Y+ P D
Sbjct: 10 FEALYDYEARTEDDLSFHKGEKFQ--ILNSSEGDWW--EVRSLTTGETGYIPSPYLAPVD 65
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
+Y +++F SR +ELSF+ GD+ V K+ E W A L G + YV
Sbjct: 12 KYVGLWDFKSRTDEELSFRAGDVFHVARKE--EQWWWATLLDEAGGAVAQGYV 62
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGD 158
Y+ + + S +L+F +V +V +KE WW T+ D
Sbjct: 13 YVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLD 51
>pdb|1PNJ|A Chain A, Solution Structure And Ligand-Binding Site Of The Sh3
Domain Of The P85alpha Subunit Of Phosphatidylinositol
3- Kinase
pdb|2PNI|A Chain A, Solution Structure And Ligand-Binding Site Of The Sh3
Domain Of The P85alpha Subunit Of Phosphatidylinositol
3- Kinase
Length = 86
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 15/73 (20%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPV----------KQNAEP---GWLAG--EL 211
+E +YRA+Y++ +++ GDI+ V Q A+P GWL G E
Sbjct: 5 AEGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEAKPEEIGWLNGYNET 64
Query: 212 RGQTGWFPESYVE 224
G+ G FP +YVE
Sbjct: 65 TGERGDFPGTYVE 77
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 33.5 bits (75), Expect = 0.17, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG-QTGWFPESYVEPCD 227
A+Y++VS + D+LSFQ GD MV ++++ E W A L + G+ P +YV D
Sbjct: 8 ALYDYVSWSPDDLSFQKGD-QMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 60
Score = 32.3 bits (72), Expect = 0.34, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 115 MSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW 152
M D +A Y Y S P DL+F + + + V ++ +WW
Sbjct: 1 MEDIIVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWW 38
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 46 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITPVN 100
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 85 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITPVN 139
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 43 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITPVN 97
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNA---EPGWLAGEL-RGQTGWFPESYVEP 225
+ A++++ + +EL+ + GD + V + A + GW G+L G+ G FP +YV P
Sbjct: 32 WTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP 89
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 33.1 bits (74), Expect = 0.20, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
G +EY RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 1 GSAEY--VRALFDFNGNDEEDLPFKKGDILRIRDKPE-EQWWNAEDSEGKRGMIPVPYVE 57
>pdb|1ABO|A Chain A, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABO|B Chain B, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABQ|A Chain A, Crystal Structure Of The Unliganded Abl Tyrosine Kinase
Sh3 Domain
Length = 62
Score = 33.1 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 7 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITPVN 61
>pdb|3I5R|A Chain A, Pi3k Sh3 Domain In Complex With A Peptide Ligand
pdb|3I5S|A Chain A, Crystal Structure Of Pi3k Sh3
pdb|3I5S|B Chain B, Crystal Structure Of Pi3k Sh3
pdb|3I5S|C Chain C, Crystal Structure Of Pi3k Sh3
pdb|3I5S|D Chain D, Crystal Structure Of Pi3k Sh3
Length = 83
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPV----------KQNAEP---GWLAG--ELRGQT 215
+YRA+Y++ +++ GDI+ V Q A P GWL G E G+
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 216 GWFPESYVE 224
G FP +YVE
Sbjct: 67 GDFPGTYVE 75
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 33.1 bits (74), Expect = 0.24, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG-QTGWFPESYVEPCD 227
A+Y++VS + D+LSFQ GD MV ++++ E W A L + G+ P +YV D
Sbjct: 8 ALYDYVSWSPDDLSFQKGD-QMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 60
Score = 32.3 bits (72), Expect = 0.42, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 115 MSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW 152
M D +A Y Y S P DL+F + + + V ++ +WW
Sbjct: 1 MEDIIVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWW 38
>pdb|1MV3|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 213
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 13/67 (19%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE---PGWLAG----------ELRGQTGW 217
+ +A +++ + + DEL + GD+++V QN E GWL G +L G
Sbjct: 144 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGV 203
Query: 218 FPESYVE 224
FPE++ E
Sbjct: 204 FPENFTE 210
>pdb|1PHT|A Chain A, Phosphatidylinositol 3-Kinase P85-Alpha Subunit Sh3
Domain, Residues 1-85
Length = 85
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 15/73 (20%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPV----------KQNAEP---GWLAG--EL 211
+E +YRA+Y++ +++ GDI+ V Q A P GWL G E
Sbjct: 3 AEGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNET 62
Query: 212 RGQTGWFPESYVE 224
G+ G FP +YVE
Sbjct: 63 TGERGDFPGTYVE 75
>pdb|1AWO|A Chain A, The Solution Nmr Structure Of Abl Sh3 And Its Relationship
To Sh2 In The Sh(32) Construct, 20 Structures
Length = 62
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P
Sbjct: 8 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITP 60
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCD 227
+ A+Y++ +R ++LSF+ G+ + N E W G++G+ P +YV P D
Sbjct: 30 FVALYDYEARTTEDLSFKKGERFQII--NNTEGDWWEARSIATGKSGYIPSNYVVPAD 85
>pdb|1PKS|A Chain A, Structure Of The Pi3k Sh3 Domain And Analysis Of The Sh3
Family
pdb|1PKT|A Chain A, Structure Of The Pi3k Sh3 Domain And Analysis Of The Sh3
Family
Length = 79
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPV----------KQNAEP---GWLAG--ELRGQT 215
+YRA+Y++ +++ GDI+ V Q A P GWL G E G+
Sbjct: 7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER 66
Query: 216 GWFPESYVE 224
G FP +YVE
Sbjct: 67 GDFPGTYVE 75
>pdb|1MUZ|A Chain A, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
pdb|1MV0|B Chain B, Nmr Structure Of The Tumor Suppressor Bin1: Alternative
Splicing In Melanoma And Interaction With C-Myc
Length = 81
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 13/67 (19%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE---PGWLAG----------ELRGQTGW 217
+ +A +++ + + DEL + GD+++V QN E GWL G +L G
Sbjct: 12 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGV 71
Query: 218 FPESYVE 224
FPE++ E
Sbjct: 72 FPENFTE 78
>pdb|3O5Z|A Chain A, Crystal Structure Of The Sh3 Domain From P85beta Subunit
Of Phosphoinositide 3-Kinase (Pi3k)
pdb|3O5Z|B Chain B, Crystal Structure Of The Sh3 Domain From P85beta Subunit
Of Phosphoinositide 3-Kinase (Pi3k)
Length = 90
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVP--------VKQNAEP-----GWLAG--ELRGQT 215
+YRA+Y F ++L PGD+++V V + E GW+ G E Q
Sbjct: 13 QYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQR 72
Query: 216 GWFPESYVE 224
G FP +YVE
Sbjct: 73 GDFPGTYVE 81
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
G S +Y + + + ELS Q G+++ V K E GW + GW P +Y+E
Sbjct: 4 GSSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKN--ESGWWFVSTSEEQGWVPATYLE 61
Query: 225 PCD 227
+
Sbjct: 62 AQN 64
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 168 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
E RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 13 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPE-EQWWNAEDSEGKRGMIPVPYVE 68
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAG---ELRGQTGWFPESYV 223
A Y + +R DELS Q GD + + GW G + + G FP SY+
Sbjct: 16 AFYNYDARGADELSLQIGDTVHIL---ETYEGWYRGYTLRKKSKKGIFPASYI 65
>pdb|2KT1|A Chain A, Solution Nmr Structure Of The Sh3 Domain From The P85beta
Subunit Of Phosphatidylinositol 3-Kinase From H.Sapiens,
Northeast Structural Genomics Consortium Target Hr5531e
Length = 88
Score = 32.3 bits (72), Expect = 0.34, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVP--------VKQNAEP-----GWLAG--ELRGQT 215
+YRA+Y F ++L PGD+++V V + E GW+ G E Q
Sbjct: 8 QYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQR 67
Query: 216 GWFPESYVE 224
G FP +YVE
Sbjct: 68 GDFPGTYVE 76
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ + D+LSF G+ + + + W A L G+TG+ P +YV P D
Sbjct: 3 FVALYDYEAITEDDLSFHKGEKFQI-LNSSEGDWWEARSLTTGETGYIPSNYVAPVD 58
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 32.3 bits (72), Expect = 0.36, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
A+Y++ ++ DE++ + GDI+ + N + W E+ + G+ P +YV+ D
Sbjct: 6 ALYDYQEKSPDEVTMKKGDILTLLNSTNKD--WWKVEVNDRQGFVPAAYVKKLD 57
>pdb|1SPK|A Chain A, Solution Structure Of Rsgi Ruh-010, An Sh3 Domain From
Mouse Cdna
Length = 72
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 167 SEYRRYRAIYEFVSRNGDEL-SFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYV 223
S ++ + I+ + N L SF GD++ + + + + GWL GE GWFP SY
Sbjct: 5 SSGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKD-GWLYGEHDTTKARGWFPSSYT 63
Query: 224 E 224
+
Sbjct: 64 K 64
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 32.3 bits (72), Expect = 0.36, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 4 RALFDFNGNDEEDLPFKKGDILRIRDKPE-EQWWNAEDSEGKRGMIPVPYVE 54
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States
By Relaxation Dispersion Nmr
Length = 62
Score = 32.3 bits (72), Expect = 0.36, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 122 AAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI 156
A Y YD+ E +LTF D++I + ++DWW G +
Sbjct: 9 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGEL 44
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 32.3 bits (72), Expect = 0.37, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPE-EQWWNAEDSEGKRGMIPVPYVE 55
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 32.3 bits (72), Expect = 0.38, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPE-EQWWNAEDSEGKRGMIPVPYVE 55
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 32.3 bits (72), Expect = 0.38, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPE-EQWWNAEDSEGKRGMIPVPYVE 55
>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
Hypothetical Protein Sh3rf2
Length = 70
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCD 227
+ A++ + + +EL Q G+ I V K + GWL G L G+TG FP YV P
Sbjct: 10 FVALHTYSAHRPEELDLQKGEGIRVLGKY--QDGWLKGLSLLTGRTGIFPSDYVIPVS 65
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 7 RALFDFNGNDEEDLPFKKGDILRIRDKPE-EQWWNAEDSEGKRGMIPVPYVE 57
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 122 AAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI 156
A Y YD+ E +LTF D++I + ++DWW G +
Sbjct: 6 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGEL 41
>pdb|2FPF|A Chain A, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|B Chain B, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|C Chain C, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
pdb|2FPF|D Chain D, Crystal Structure Of The Ib1 Sh3 Dimer At Low Resolution
Length = 71
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWL-AGELR-GQTGWFPESYV 223
+RAI+ FV R+ DEL + D ++V ++ AE W A +R G G FP Y
Sbjct: 9 HRAIFRFVPRHEDELELEVDDPLLVELQ--AEDYWYEAYNMRTGARGVFPAYYA 60
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 32.0 bits (71), Expect = 0.50, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 176 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEP 225
Y+F++ + DEL+ + GD + + + ++ W+ + G++G P ++EP
Sbjct: 13 YDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 63
>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of
Kiaa1010 Protein [homo Sapiens]
Length = 79
Score = 32.0 bits (71), Expect = 0.51, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMV----PVKQNAEPGWLAGELRGQTGWFPESYV 223
Y A+Y F +RN +ELS + + V N E W E+ G+ G+ P +Y+
Sbjct: 16 YFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTE--WWLAEVNGKKGYVPSNYI 69
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 140 RALFDFNGNDEEDLPFKKGDILRIRDKPE-EQWWNAEDSEGKRGMIPVPYVE 190
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPE-EQWWNAEDSEGKRGMIPVPYVE 188
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
RA+++F + ++L F+ GDI+ + K E W A + G+ G P YVE
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPE-EQWWNAEDSEGKRGMIPVPYVE 188
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 112 ANMMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW 152
A+ + D IA + Y+ + GDL F + E + + ++ +WW
Sbjct: 7 ASPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWW 47
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 112 ANMMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW 152
A+ + D IA + Y+ + GDL F + E + + ++ +WW
Sbjct: 7 ASPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWW 47
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
Length = 60
Score = 31.6 bits (70), Expect = 0.64, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 176 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEP 225
Y+F++ + DEL+ + GD + + + ++ W+ + G++G P ++EP
Sbjct: 9 YDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase C,
Gamma 2
Length = 69
Score = 31.2 bits (69), Expect = 0.78, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQ-TGWFPESYVE 224
S R +A+Y++ ++ DEL+F G +I K+ GW G+ + +FP +YVE
Sbjct: 5 SSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPG--GWWKGDYGTRIQQYFPSNYVE 61
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 122 AAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGDRTARF 163
A Y Y + +LTF + +I+ V+K+ WW G G R ++
Sbjct: 12 ALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQY 54
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 122 AAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI 156
A Y YD+ E +LTF D++I + ++DWW G +
Sbjct: 5 AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGEL 40
>pdb|2IIM|A Chain A, Sh3 Domain Of Human Lck
Length = 62
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 115 MSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW 152
+ D IA + Y+ + GDL F + E + + ++ +WW
Sbjct: 4 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWW 41
>pdb|1H92|A Chain A, Sh3 Domain Of Human Lck Tyrosine Kinase
Length = 63
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 115 MSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW 152
+ D IA + Y+ + GDL F + E + + ++ +WW
Sbjct: 4 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWW 41
>pdb|3A98|A Chain A, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
pdb|3A98|C Chain C, Crystal Structure Of The Complex Of The Interacting
Regions Of Dock2 And Elmo1
Length = 184
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 161 ARFRGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGW 217
A +R + R AIY F +LS Q GD++ + Q W G L + G
Sbjct: 9 APWRKADKERHGVAIYNFQGSGAPQLSLQIGDVVRI---QETCGDWYRGYLIKHKXLQGI 65
Query: 218 FPESYVEPCDETGEVVPGTE 237
FP+S++ + T E TE
Sbjct: 66 FPKSFIHIKEVTVEKRRNTE 85
>pdb|4F8Q|A Chain A, Crystal Structure Of The Human Btn3a2 Ectodomain
Length = 219
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 21/109 (19%)
Query: 188 FQPGDI---IMVPVKQNAEPGWLAGELRG-----------QTGWFPESYVEPCDETGEVV 233
FQ GD +V +K A L E++G TGW+P+ ++ + GE +
Sbjct: 102 FQDGDFYEKALVELKVAALGSNLHVEVKGYEDGGIHLECRSTGWYPQPQIQWSNAKGENI 161
Query: 234 PGTELPGDKHHLELIAEVPENISDSGGSGIAVEEGPGIPADIPSPIMGL 282
P E P + L EV ++ GGS G G+ I + ++GL
Sbjct: 162 PAVEAPVVADGVGLY-EVAASVIMRGGS------GEGVSCIIRNSLLGL 203
>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
Fut8
Length = 526
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCDET 229
AIY R DE+ +PGDII V N G+ G R G+TG +P V ET
Sbjct: 447 AIYAHQPRTADEIPMEPGDII--GVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIET 502
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ + +LSF G+ + + ++ W A L G+TG+ P +YV P D
Sbjct: 9 FVALYDYNATRWTDLSFHKGEKFQI-LDGDSGDWWEARSLTTGETGYIPSNYVAPVD 64
>pdb|1WXT|A Chain A, Solution Structure Of The Sh3 Domain Of Human Hypothetical
Protein Flj21522
Length = 68
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
+ + +YEF +RN EL+ G+ + V +++ WL G++G+ P + +EP
Sbjct: 9 KMQVLYEFEARNPRELTVVQGE--KLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLS 63
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
A+Y++ + E++ + GDI+ + N + W E+ + G+ P +YV+ D
Sbjct: 6 ALYDYQEKGDSEVTMKKGDILTLLNSTNKD--WWKVEVNDRQGFVPAAYVKKLD 57
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ + +LSF G+ + W A L G+TG+ P +YV P D
Sbjct: 9 FVALYDYQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGETGYIPSNYVAPVD 65
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPC 226
+ A+Y++ + D+LSF G+ + + + W A L G+TG+ P +YV P
Sbjct: 4 FVALYDYEAWTEDDLSFHKGEKFQI-LNSSEGDWWEARSLTTGETGYIPSNYVAPV 58
>pdb|2FPD|A Chain A, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|B Chain B, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|C Chain C, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPD|D Chain D, Sad Structure Determination: Crystal Structure Of The
Intrinsic Dimerization Sh3 Domain Of The Ib1 Scaffold
Protein
pdb|2FPE|A Chain A, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|B Chain B, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|C Chain C, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|D Chain D, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|E Chain E, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|F Chain F, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|G Chain G, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
pdb|2FPE|H Chain H, Conserved Dimerization Of The Ib1 Src-Homology 3 Domain
Length = 62
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAG--ELRGQTGWFPESY 222
+RAI+ FV R+ DEL + D ++V ++ AE W G G FP Y
Sbjct: 6 HRAIFRFVPRHEDELELEVDDPLLVELQ--AEDYWYEAYNXRTGARGVFPAYY 56
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDR 159
+A Y Y PG++T + +++ + N DWW + DR
Sbjct: 10 LALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDR 49
>pdb|2GTJ|A Chain A, Reduced Form Of Adap Hsh3-N-Domain
pdb|2GTO|A Chain A, Oxidized Form Of Adap Hsh3-N
Length = 96
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 184 DELSFQPGDII-MVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
+ELSF+ G+ I ++ + N E WL RG G+ + VE
Sbjct: 42 NELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVE 83
>pdb|1RW3|A Chain A, The Crystal Structure Of The Monomeric Reverse
Transcriptase From Moloney Murine Leukemia Virus
Length = 455
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 244 HLELIAEVPENISDSGGSGIAVEEGPGIPADIPSPIMGLGTVVPVKQ 290
H+ +++ P+ +++GG G+AV + P I P+ T V +KQ
Sbjct: 3 HMTWLSDFPQAWAETGGMGLAVRQAPLI-----IPLKATSTPVSIKQ 44
>pdb|1D0E|A Chain A, Crystal Structures Of The N-Terminal Fragment From Moloney
Murine Leukemia Virus Reverse Transcriptase Complexed
With Nucleic Acid: Functional Implications For
Template-Primer Binding To The Fingers Domain
pdb|1D0E|B Chain B, Crystal Structures Of The N-Terminal Fragment From Moloney
Murine Leukemia Virus Reverse Transcriptase Complexed
With Nucleic Acid: Functional Implications For
Template-Primer Binding To The Fingers Domain
pdb|1QAJ|A Chain A, Crystal Structures Of The N-Terminal Fragment From Moloney
Murine Leukemia Virus Reverse Transcriptase Complexed
With Nucleic Acid: Functional Implications For
Template-Primer Binding To The Fingers Domain
pdb|1QAJ|B Chain B, Crystal Structures Of The N-Terminal Fragment From Moloney
Murine Leukemia Virus Reverse Transcriptase Complexed
With Nucleic Acid: Functional Implications For
Template-Primer Binding To The Fingers Domain
Length = 259
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 244 HLELIAEVPENISDSGGSGIAVEEGPGIPADIPSPIMGLGTVVPVKQ 290
H+ +++ P+ +++GG G+AV + P I P+ T V +KQ
Sbjct: 3 HMTWLSDFPQAWAETGGMGLAVRQAPLI-----IPLKATSTPVSIKQ 44
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase
Length = 77
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR------GQ--TGWFPESYV 223
+ A++++ +R ++LSF+ GD + V + + E WLA L GQ G+ P +YV
Sbjct: 10 FVALFDYQARTAEDLSFRAGDKLQV-LDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYV 68
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT-GWFPESYVEPCD 227
A+Y++ + + ++LSFQ GD MV ++++ E W A L + G+ P +YV D
Sbjct: 14 ALYDYEAIHHEDLSFQKGD-QMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 66
>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From
Human Cdna
Length = 71
Score = 28.9 bits (63), Expect = 3.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEP-GWLAGELRGQTGWFPESYVE 224
RA+Y+ DEL+F GDI+ + + E GW L G+ G P + ++
Sbjct: 11 RALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQ 63
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDR 159
+A Y Y P ++T + +++ + N DWW +GDR
Sbjct: 10 LALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDR 49
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site Of
P130cas
Length = 167
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW 152
IA + Y+ + GDL F + E + + ++ +WW
Sbjct: 8 IALHSYEPSHDGDLGFEKGEQLRILEQSGEWW 39
>pdb|4F9L|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9L|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9P|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 220
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 215 TGWFPESYVEPCDETGEVVPGTELPGDKHHLELIAEVPENISDSGGSGIAVEEGPGIPAD 274
TGW+P+ ++ + GE +P E P + L A V ++ G S G G+
Sbjct: 143 TGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYA-VAASVIMRGSS------GEGVSCT 195
Query: 275 IPSPIMGL 282
I S ++GL
Sbjct: 196 IRSSLLGL 203
>pdb|4F80|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain
Length = 226
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 215 TGWFPESYVEPCDETGEVVPGTELPGDKHHLELIAEVPENISDSGGSGIAVEEGPGIPAD 274
TGW+P+ ++ + GE +P E P + L A V ++ G S G G+
Sbjct: 143 TGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYA-VAASVIMRGSS------GEGVSCT 195
Query: 275 IPSPIMGL 282
I S ++GL
Sbjct: 196 IRSSLLGL 203
>pdb|1KIK|A Chain A, Sh3 Domain Of Lymphocyte Specific Kinase (Lck)
Length = 57
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW 152
IA + Y+ + GDL F + E + + ++ +WW
Sbjct: 4 IALHSYEPSHDGDLGFEKGEQLRILEQSGEWW 35
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG--WLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ + +LSF G+ + PG W A L G+TG+ P +YV P D
Sbjct: 9 FVALYDYNATRWTDLSFHKGEKFQI---LEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64
>pdb|4F8T|A Chain A, Crystal Structure Of The Human Btn3a3 Ectodomain
Length = 226
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 203 EPGWLAGELRGQTGWFPESYVEPCDETGEVVPGTELPGDKHHLELIAEVPENISDSGGSG 262
E G + E R TGW+P+ ++ D GE +P E P + L A V ++ G S
Sbjct: 132 EDGGIHLECR-STGWYPQPQIKWSDTKGENIPAVEAPVVADGVGLYA-VAASVIMRGSS- 188
Query: 263 IAVEEGPGIPADIPSPIMGL 282
G G+ I + ++GL
Sbjct: 189 -----GGGVSCIIRNSLLGL 203
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 293 EPGWLAGELRGQTGWFPESYVEPCDETGEVVPGTELP 329
E G + E R TGW+P+ ++ D GE +P E P
Sbjct: 132 EDGGIHLECR-STGWYPQPQIKWSDTKGENIPAVEAP 167
>pdb|2K2M|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3 Binding
Length = 68
Score = 28.5 bits (62), Expect = 5.0, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 176 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
Y+F +RN ELS + D++ V ++ W + GQ G+ P + + P
Sbjct: 15 YDFQARNSSELSVKQRDVL--EVLDDSRKWWKVRDPAGQEGYVPYNILTP 62
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT-GWFPESYVEPCD 227
A+Y++ + + ++LSFQ GD MV ++++ E W A L + G+ P +YV D
Sbjct: 14 ALYDYEAIHHEDLSFQKGD-QMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 66
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT-GWFPESYVEPCD 227
A+Y++ + + ++LSFQ GD MV ++++ E W A L + G+ P +YV D
Sbjct: 7 ALYDYEAIHHEDLSFQKGD-QMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 59
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT-GWFPESYVEPCD 227
A+Y++ + + ++LSFQ GD MV ++++ E W A L + G+ P +YV D
Sbjct: 13 ALYDYEAIHHEDLSFQKGD-QMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 65
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
Length = 86
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT-GWFPESYVEPCD 227
A+Y++ + + ++LSFQ GD MV ++++ E W A L + G+ P +YV D
Sbjct: 30 ALYDYEAIHHEDLSFQKGD-QMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 82
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 28.1 bits (61), Expect = 6.4, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG-QTGWFPESYVEPCD 227
A+Y++ + + ++LSFQ GD MV ++++ E W A L + G+ P +YV D
Sbjct: 5 ALYDYEAIHHEDLSFQKGD-QMVVLEESGE-WWKARSLATRKEGYIPSNYVARVD 57
Score = 27.7 bits (60), Expect = 10.0, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW 152
+A Y Y++ DL+F + + + V ++ +WW
Sbjct: 4 VALYDYEAIHHEDLSFQKGDQMVVLEESGEWW 35
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 28.1 bits (61), Expect = 7.1, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 115 MSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW 152
M D +A Y Y S DL+F + + + V ++ +WW
Sbjct: 1 MEDIIVVALYDYYSPFSWDLSFQKGDQMVVLEESGEWW 38
>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
pdb|3C8Z|B Chain B, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
Length = 414
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 157 GDRTARFRGVSEYRRYRAIYEFVSRNGDELSFQPG-----DIIMVPVKQNAEPGWLAGEL 211
D TA+F S Y R + F R GD +PG D ++ ++ EP W +
Sbjct: 166 ADATAQFGYESGYDRDTMLTLFAERGGD--PDRPGKSDQLDALLWRAERPGEPSWPSPFG 223
Query: 212 RGQTGWFPE 220
RG+ GW E
Sbjct: 224 RGRPGWHVE 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,563,104
Number of Sequences: 62578
Number of extensions: 528239
Number of successful extensions: 1690
Number of sequences better than 100.0: 258
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 1163
Number of HSP's gapped (non-prelim): 547
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)