Query psy7077
Match_columns 336
No_of_seqs 347 out of 2607
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 17:29:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1029|consensus 100.0 1.9E-36 4.1E-41 298.6 11.7 247 50-320 827-1112(1118)
2 KOG4348|consensus 100.0 1.8E-30 4E-35 243.2 5.2 196 120-317 4-319 (627)
3 KOG1029|consensus 100.0 2.1E-29 4.6E-34 249.0 9.6 270 38-327 695-1050(1118)
4 KOG4226|consensus 100.0 9.5E-29 2.1E-33 219.9 11.7 187 117-322 4-255 (379)
5 KOG4225|consensus 99.9 1.3E-26 2.7E-31 218.2 12.2 196 119-316 232-489 (489)
6 KOG4226|consensus 99.9 7.2E-25 1.6E-29 195.2 9.6 186 45-230 13-253 (379)
7 KOG4348|consensus 99.9 2.7E-22 5.8E-27 188.6 4.1 183 45-227 10-319 (627)
8 KOG4225|consensus 99.8 1.3E-19 2.9E-24 171.0 9.0 130 171-319 232-364 (489)
9 KOG3601|consensus 99.6 1.1E-16 2.4E-21 138.7 5.2 196 120-317 3-219 (222)
10 KOG4792|consensus 99.6 4.9E-16 1.1E-20 135.6 8.0 150 169-320 124-288 (293)
11 PF14604 SH3_9: Variant SH3 do 99.5 4.7E-14 1E-18 96.8 4.6 49 174-224 1-49 (49)
12 KOG4792|consensus 99.5 9.8E-14 2.1E-18 121.3 7.1 109 119-229 126-287 (293)
13 KOG3632|consensus 99.4 3.6E-13 7.7E-18 137.6 9.2 135 170-317 1139-1308(1335)
14 KOG2996|consensus 99.4 2.3E-13 5E-18 132.7 6.3 50 268-317 812-863 (865)
15 PF14604 SH3_9: Variant SH3 do 99.3 2E-12 4.4E-17 88.7 5.5 37 278-314 13-49 (49)
16 PF07653 SH3_2: Variant SH3 do 99.3 1.6E-12 3.6E-17 91.4 5.0 55 171-226 1-55 (55)
17 KOG2996|consensus 99.3 4.7E-12 1E-16 123.7 5.7 57 171-227 807-863 (865)
18 KOG2070|consensus 99.2 2E-11 4.4E-16 117.4 4.7 58 168-227 16-73 (661)
19 KOG2070|consensus 99.1 2.1E-11 4.6E-16 117.2 2.8 56 247-319 20-75 (661)
20 KOG3601|consensus 99.1 6.2E-11 1.3E-15 103.2 4.1 163 39-227 3-219 (222)
21 KOG3632|consensus 99.1 1.2E-10 2.6E-15 119.5 6.7 109 119-228 1140-1309(1335)
22 PF07653 SH3_2: Variant SH3 do 99.1 1.6E-10 3.4E-15 81.2 5.1 39 278-316 16-55 (55)
23 smart00326 SH3 Src homology 3 99.1 4.5E-10 9.8E-15 78.5 6.7 55 170-226 3-58 (58)
24 KOG2199|consensus 99.1 4.1E-11 8.8E-16 112.8 1.5 59 167-227 213-271 (462)
25 PF00018 SH3_1: SH3 domain; I 99.1 1.6E-10 3.5E-15 78.8 4.1 46 173-220 1-48 (48)
26 cd00174 SH3 Src homology 3 dom 99.0 7.1E-10 1.5E-14 76.5 6.0 51 172-224 2-53 (54)
27 PF00018 SH3_1: SH3 domain; I 99.0 2.5E-10 5.5E-15 77.9 3.0 45 121-165 1-48 (48)
28 KOG1118|consensus 99.0 2.1E-10 4.5E-15 104.8 2.9 58 169-228 306-363 (366)
29 KOG2199|consensus 98.8 1.4E-09 3E-14 102.6 1.8 48 119-166 217-265 (462)
30 KOG1118|consensus 98.8 5.7E-09 1.2E-13 95.5 4.1 41 278-318 323-363 (366)
31 KOG2546|consensus 98.7 3.6E-09 7.7E-14 100.6 2.4 52 249-317 428-479 (483)
32 KOG0162|consensus 98.7 5.4E-09 1.2E-13 104.9 3.1 54 170-225 1052-1105(1106)
33 smart00326 SH3 Src homology 3 98.7 3E-08 6.6E-13 69.0 5.6 39 278-316 19-58 (58)
34 KOG2856|consensus 98.6 9E-09 2E-13 96.1 1.7 56 170-226 415-471 (472)
35 cd00174 SH3 Src homology 3 dom 98.6 1E-07 2.2E-12 65.5 5.4 39 277-315 15-54 (54)
36 KOG0162|consensus 98.6 4.6E-08 1E-12 98.4 5.0 40 277-316 1067-1106(1106)
37 KOG1264|consensus 98.4 7.3E-08 1.6E-12 98.0 2.2 57 170-228 775-832 (1267)
38 KOG0515|consensus 98.4 8.2E-08 1.8E-12 93.7 2.0 60 168-227 682-742 (752)
39 KOG2546|consensus 98.3 2E-07 4.4E-12 88.8 2.2 56 170-227 424-479 (483)
40 KOG1702|consensus 98.2 1.2E-06 2.6E-11 76.1 3.5 56 169-226 207-264 (264)
41 KOG3655|consensus 98.1 8E-07 1.7E-11 86.1 1.8 57 168-226 426-483 (484)
42 KOG2856|consensus 98.1 5E-07 1.1E-11 84.7 -0.3 40 277-316 430-471 (472)
43 KOG1843|consensus 98.1 1.3E-06 2.9E-11 83.0 2.5 57 169-225 416-472 (473)
44 KOG3655|consensus 98.0 2E-06 4.4E-11 83.3 2.1 43 275-317 441-484 (484)
45 KOG1264|consensus 98.0 3.6E-06 7.7E-11 86.0 3.4 41 278-318 791-832 (1267)
46 KOG3875|consensus 98.0 1.2E-06 2.6E-11 80.6 -0.1 59 170-228 269-332 (362)
47 KOG3523|consensus 97.8 4.2E-06 9.2E-11 83.2 -0.9 57 170-228 609-667 (695)
48 KOG2222|consensus 97.7 7.3E-06 1.6E-10 79.5 -0.0 61 169-231 548-608 (848)
49 KOG0515|consensus 97.7 2E-05 4.4E-10 77.4 2.3 54 119-177 685-742 (752)
50 KOG4773|consensus 97.7 1.1E-06 2.3E-11 82.0 -6.2 59 169-229 175-233 (386)
51 KOG3875|consensus 97.5 3.9E-05 8.4E-10 70.8 1.9 42 277-318 284-332 (362)
52 KOG3523|consensus 97.5 1.4E-05 2.9E-10 79.7 -1.8 42 277-318 624-667 (695)
53 KOG4278|consensus 97.5 0.0001 2.2E-09 74.4 4.2 58 169-228 90-148 (1157)
54 KOG1843|consensus 97.4 7.6E-05 1.7E-09 71.2 2.8 48 119-166 418-468 (473)
55 KOG2528|consensus 97.4 0.00012 2.5E-09 70.7 3.5 58 170-228 3-61 (490)
56 KOG3725|consensus 97.4 4E-05 8.7E-10 69.0 0.2 59 168-226 316-374 (375)
57 KOG4773|consensus 97.3 5.9E-05 1.3E-09 70.6 0.7 45 277-321 191-235 (386)
58 KOG1702|consensus 97.2 0.00035 7.5E-09 61.0 3.6 39 278-316 224-264 (264)
59 KOG2222|consensus 97.1 0.00011 2.5E-09 71.4 0.0 47 276-322 563-609 (848)
60 KOG1451|consensus 97.0 0.00092 2E-08 66.7 5.2 40 277-316 772-812 (812)
61 KOG1451|consensus 96.9 0.00085 1.8E-08 66.9 3.9 57 169-226 756-812 (812)
62 KOG4429|consensus 96.8 0.00045 9.7E-09 63.4 1.5 55 170-226 364-418 (421)
63 KOG3557|consensus 96.8 0.00039 8.5E-09 70.0 0.5 57 170-229 501-558 (721)
64 KOG3775|consensus 96.6 0.0015 3.2E-08 62.0 2.6 60 170-231 263-324 (482)
65 KOG4575|consensus 96.5 0.0024 5.1E-08 64.3 4.1 56 170-228 9-67 (874)
66 KOG4278|consensus 96.5 0.0025 5.5E-08 64.6 4.1 48 119-166 92-141 (1157)
67 KOG4575|consensus 96.3 0.0042 9.2E-08 62.5 4.3 40 278-317 25-66 (874)
68 PF08239 SH3_3: Bacterial SH3 96.2 0.0082 1.8E-07 41.4 4.2 35 280-314 19-55 (55)
69 KOG3725|consensus 96.1 0.011 2.3E-07 53.7 5.4 47 119-165 319-368 (375)
70 KOG0197|consensus 96.1 0.0024 5.2E-08 63.2 1.2 57 169-227 11-70 (468)
71 KOG3775|consensus 96.0 0.0045 9.8E-08 58.8 2.5 52 270-321 271-324 (482)
72 KOG3771|consensus 95.9 0.0034 7.4E-08 61.4 1.6 56 169-225 400-455 (460)
73 KOG3771|consensus 95.7 0.0059 1.3E-07 59.8 2.2 46 119-164 402-449 (460)
74 KOG4429|consensus 95.4 0.011 2.5E-07 54.4 2.7 39 278-316 380-418 (421)
75 smart00287 SH3b Bacterial SH3 95.3 0.032 7E-07 39.4 4.4 35 280-314 27-62 (63)
76 KOG2528|consensus 95.2 0.013 2.9E-07 56.9 2.7 41 277-317 18-60 (490)
77 KOG3557|consensus 95.0 0.0089 1.9E-07 60.5 0.9 48 119-166 502-550 (721)
78 COG3103 SH3 domain protein [Si 94.6 0.055 1.2E-06 48.1 4.9 103 187-316 49-152 (205)
79 KOG0609|consensus 94.6 0.022 4.7E-07 56.8 2.5 48 119-166 216-276 (542)
80 KOG0609|consensus 94.6 0.013 2.8E-07 58.4 0.8 54 170-225 215-280 (542)
81 KOG0197|consensus 94.5 0.025 5.3E-07 56.2 2.7 49 118-166 12-64 (468)
82 KOG3565|consensus 93.6 0.019 4.1E-07 59.5 -0.1 58 169-227 578-637 (640)
83 PRK10884 SH3 domain-containing 93.4 0.081 1.8E-06 47.2 3.6 38 280-317 50-89 (206)
84 PF08239 SH3_3: Bacterial SH3 92.8 0.17 3.7E-06 34.7 3.8 37 187-224 18-55 (55)
85 PF06347 SH3_4: Bacterial SH3 92.4 0.27 5.8E-06 33.9 4.4 33 280-313 21-53 (55)
86 KOG0199|consensus 92.3 0.13 2.9E-06 53.3 3.7 47 120-166 377-427 (1039)
87 KOG3565|consensus 91.9 0.067 1.4E-06 55.5 1.1 41 277-317 594-637 (640)
88 KOG0199|consensus 91.7 0.21 4.6E-06 51.9 4.4 38 278-315 391-431 (1039)
89 COG3103 SH3 domain protein [Si 91.2 0.3 6.5E-06 43.5 4.3 42 280-321 50-93 (205)
90 PF14603 hSH3: Helically-exten 90.3 0.29 6.3E-06 37.3 2.9 40 278-317 33-73 (89)
91 PF14603 hSH3: Helically-exten 90.1 0.4 8.7E-06 36.5 3.5 44 182-227 29-73 (89)
92 smart00287 SH3b Bacterial SH3 89.7 0.52 1.1E-05 33.1 3.8 36 187-224 26-62 (63)
93 PRK10884 SH3 domain-containing 88.4 0.52 1.1E-05 42.1 3.7 40 187-227 49-89 (206)
94 PRK13914 invasion associated s 88.2 0.76 1.7E-05 46.0 5.0 44 280-323 105-149 (481)
95 PF06347 SH3_4: Bacterial SH3 87.6 0.86 1.9E-05 31.3 3.6 35 186-223 19-53 (55)
96 KOG3705|consensus 86.8 0.78 1.7E-05 44.5 4.0 55 169-225 509-565 (580)
97 KOG0040|consensus 85.1 0.033 7.2E-07 61.2 -6.7 58 170-229 969-1026(2399)
98 KOG3812|consensus 82.0 0.92 2E-05 43.1 2.1 46 120-165 61-117 (475)
99 KOG3812|consensus 80.6 0.42 9.2E-06 45.3 -0.6 34 278-311 82-118 (475)
100 smart00743 Agenet Tudor-like d 77.9 3.3 7.1E-05 29.0 3.5 22 280-301 3-24 (61)
101 PF11302 DUF3104: Protein of u 65.7 7.9 0.00017 28.7 3.1 24 277-300 3-32 (75)
102 PRK13914 invasion associated s 63.8 8.1 0.00018 38.9 3.8 37 187-225 104-141 (481)
103 smart00743 Agenet Tudor-like d 58.1 15 0.00032 25.6 3.4 24 187-212 2-25 (61)
104 PF11302 DUF3104: Protein of u 54.9 10 0.00022 28.1 2.1 24 133-156 3-33 (75)
105 KOG3705|consensus 49.0 28 0.00061 34.2 4.6 48 119-166 511-561 (580)
106 PF12913 SH3_6: SH3 domain of 47.6 32 0.00069 23.9 3.5 34 186-220 21-54 (54)
107 KOG3580|consensus 46.9 25 0.00054 36.3 4.0 51 170-220 505-562 (1027)
108 KOG4384|consensus 45.6 15 0.00032 35.3 2.1 43 277-319 154-196 (361)
109 PF12913 SH3_6: SH3 domain of 45.3 48 0.001 23.0 4.1 31 280-310 23-54 (54)
110 KOG0040|consensus 45.1 1.7 3.6E-05 48.7 -4.6 81 86-166 928-1018(2399)
111 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 44.1 33 0.00072 25.4 3.6 35 280-314 4-40 (86)
112 PF00575 S1: S1 RNA binding do 40.9 46 0.00099 23.7 3.8 36 280-315 2-39 (74)
113 PF05641 Agenet: Agenet domain 35.7 39 0.00084 24.2 2.7 21 280-300 1-24 (68)
114 KOG4384|consensus 34.5 23 0.00049 34.1 1.5 57 171-229 138-196 (361)
115 cd05705 S1_Rrp5_repeat_hs14 S1 34.4 94 0.002 22.5 4.6 31 280-310 1-33 (74)
116 cd04454 S1_Rrp4_like S1_Rrp4_l 33.6 78 0.0017 23.2 4.2 34 281-314 5-40 (82)
117 PRK13545 tagH teichoic acids e 26.1 75 0.0016 32.7 3.7 42 283-324 375-422 (549)
118 KOG1314|consensus 25.8 1.6E+02 0.0036 28.5 5.6 71 97-167 279-378 (414)
119 KOG1314|consensus 24.8 84 0.0018 30.4 3.5 43 276-319 332-386 (414)
120 PF09926 DUF2158: Uncharacteri 23.6 52 0.0011 22.7 1.5 10 280-289 1-10 (53)
121 cd05706 S1_Rrp5_repeat_sc10 S1 23.4 1.7E+02 0.0036 20.6 4.3 35 280-314 1-37 (73)
122 COG5164 SPT5 Transcription elo 23.0 2.2E+02 0.0047 28.7 6.1 36 280-315 140-178 (607)
123 PRK08582 hypothetical protein; 22.1 1.8E+02 0.0038 24.2 4.7 36 279-314 2-39 (139)
124 smart00333 TUDOR Tudor domain. 21.2 1.7E+02 0.0036 19.5 3.7 21 280-301 3-23 (57)
125 smart00316 S1 Ribosomal protei 20.9 1.2E+02 0.0027 20.5 3.1 33 282-314 2-36 (72)
No 1
>KOG1029|consensus
Probab=100.00 E-value=1.9e-36 Score=298.65 Aligned_cols=247 Identities=27% Similarity=0.508 Sum_probs=191.4
Q ss_pred cceeeccCCceEEecccccccccccccCCCcccchhhhhcccc----cc---ccccccCc----Chh-hhHHHhccccCc
Q psy7077 50 HQRLKITKDHTIKAKEEGDLKDTQSSSDGSQDVFCSVHLQLST----KE---KDLEVNNS----NLD-DLKKTLANMMSD 117 (336)
Q Consensus 50 h~~lk~~k~~~i~~~ee~~~~~~~~t~~~~r~~~~~~~~qi~s----k~---~~l~~~~~----~l~-el~~~~~~~~~~ 117 (336)
...|+|.|+++|.+.|+++.||.. +..+.+++|.+.++++.. .. ..+++... ... +.-.+.+.....
T Consensus 827 e~dLsFskgd~I~VlekqemwW~G-~v~g~~GwFPksYVk~~~~~t~st~~~~s~es~sae~p~~~~~~a~~taa~v~~q 905 (1118)
T KOG1029|consen 827 ENDLSFSKGDTITVLEKQEMWWFG-EVAGEIGWFPKSYVKEVGAITGSTTKIESPESLSAEAPGAAASDATPTAAPVAPQ 905 (1118)
T ss_pred cccccccCCCeeeeehhccceecc-cccCccCcCcHHhhhhccccccccccccCcccccccCccccccccCccccccccc
Confidence 678999999999999999999888 778889999999988321 11 11111110 000 010111222233
Q ss_pred c-EEEEecccCCCCCCCccccCCCEEEEEeecCCceecccCCCcccccccc---------------------cceeeeee
Q psy7077 118 K-YYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTARFRGVS---------------------EYRRYRAI 175 (336)
Q Consensus 118 ~-~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~Ww~g~~~~~~g~~p~~~---------------------~~~~~~al 175 (336)
. +|..+++|++.+..||.|..||.|.|++++++||.|+++++.|.||++. ....+.++
T Consensus 906 eq~ya~~~~~e~vEq~dlt~~egd~iLvtekdgeww~gt~~~r~gifPan~y~r~~~q~gs~Tp~k~g~~~kkpeiAqVi 985 (1118)
T KOG1029|consen 906 EQLYAVYPYFEAVEQGDLTFHEGDEILVTEKDGEWWTGTCGDREGIFPANYYVRPKDQEGSGTPPKQGPTPKKPEIAQVI 985 (1118)
T ss_pred ceeEEEecccccccCCCccccccceEEEeeccCceeccccCCccccccccceeeehhccCCCCCCCCCCCCCCchhhhhh
Confidence 3 6655556666999999999999999999999999999999999999761 12347789
Q ss_pred eecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEe--eCc---eeeecccceeecCCCCCCCCCCCCCCCCcccccccc
Q psy7077 176 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQ---TGWFPESYVEPCDETGEVVPGTELPGDKHHLELIAE 250 (336)
Q Consensus 176 ~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~--~g~---~G~fP~~yve~~~~~~~~~~~~~~~~~~~~~~~~a~ 250 (336)
-+|.+..++.|++.+|++|.+ ..+...|||.|++ +|+ .||||++||+.+.+......+ .....+..|+.
T Consensus 986 a~yvAs~peQLsla~GqlIlI--rkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~raTP----a~~~v~qviam 1059 (1118)
T KOG1029|consen 986 ADYVASGPEQLSLAPGQLILI--RKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGRATP----ATRPVCQVIAM 1059 (1118)
T ss_pred hhhhccCchhccccCccEEEE--EecCCCccchhhHhhcCCccccccccHHHhhhccCCCCcCCC----CCCccceeEEe
Confidence 999999999999999999988 4678999999986 454 599999999999865322222 22224677899
Q ss_pred CCCCcCCCCCCCccccCCCCCCCCCCCCCCCCCCEEEEEeecCCCeEEEEeCCceeEeeCCCeeecCCCC
Q psy7077 251 VPENISDSGGSGIAVEEGPGIPADIPSPIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG 320 (336)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~~~~~~~~~~Lsf~~Gd~V~V~~~~~~~W~~g~~~G~~G~fPsnyV~~i~~~~ 320 (336)
|+|.+.+.++|+ |.+||+|.|+.+++..||.|+.||++|+||+|||.....++
T Consensus 1060 YdY~AqndDELs-----------------F~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~ttd~ 1112 (1118)
T KOG1029|consen 1060 YDYEAQNDDELS-----------------FKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQTTDG 1112 (1118)
T ss_pred eccccCCccccc-----------------ccCCCEEEecCCCChhhhcccccCccccCccccccccccCC
Confidence 999999988866 99999999999999999999999999999999997665443
No 2
>KOG4348|consensus
Probab=99.96 E-value=1.8e-30 Score=243.25 Aligned_cols=196 Identities=27% Similarity=0.494 Sum_probs=142.0
Q ss_pred EEEecccCCCCCCCccccCCCEEEEEee-cCCceecccCCCccccccc--------------------------------
Q psy7077 120 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARFRGV-------------------------------- 166 (336)
Q Consensus 120 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~~g~~p~~-------------------------------- 166 (336)
|++-|||++..+|||+++.|++|.-+.+ +.+||.|+.+|+.|.||.+
T Consensus 4 ~ive~dy~a~hddelti~vgeii~nvkk~e~gw~egelngrrg~fpdnfV~eik~e~k~d~l~nk~~r~~l~q~~s~n~l 83 (627)
T KOG4348|consen 4 YIVEYDYDAVHDDELTIRVGEIIRNVKKLEEGWLEGELNGRRGQFPDNFVVEIKVEFKDDDLVNKLSRDSLVQMTSRNPL 83 (627)
T ss_pred eeeecccccccCceeeEeHHHHHHhhhhhccceeeceeccccccCCchhhhhhhhhcccccccccccccchhhcccCCCc
Confidence 7889999999999999999999998888 9999999999999999753
Q ss_pred --------------ccceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceeecCCCCCC
Q psy7077 167 --------------SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV 232 (336)
Q Consensus 167 --------------~~~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~~~~~~~ 232 (336)
...+.|+++|.|.+++.|||.|+.||+|.+. .+...|||.|.++|+.|+||+|||..+....+.
T Consensus 84 ~~~q~v~rtn~~~q~~~r~c~v~f~Y~pqndDELelkVGDiIeli--~eVEeGWw~G~Lngk~GmFPsNFVkel~~~sde 161 (627)
T KOG4348|consen 84 TVHQQVERTNPPPQPQARICVVTFAYSPQNDDELELKVGDIIELI--SEVEEGWWKGKLNGKVGMFPSNFVKELPTPSDE 161 (627)
T ss_pred cccCcccccCCCCCccceeEEEEEeecCCCCceeeeeeccHHHhh--hHhhhhhhhceecCcccccchhhceecCCCCcc
Confidence 1235699999999999999999999999994 568899999999999999999999988743321
Q ss_pred CCCCC--------------C-C----------CCCccccccccCCC--------------C-cCCC----------CCCC
Q psy7077 233 VPGTE--------------L-P----------GDKHHLELIAEVPE--------------N-ISDS----------GGSG 262 (336)
Q Consensus 233 ~~~~~--------------~-~----------~~~~~~~~~a~~~~--------------~-~~~~----------~~l~ 262 (336)
..... + + +.......+....+ + .+.. ..++
T Consensus 162 ~~~aqd~~~S~stlagst~~~ps~s~~SE~a~gsv~qPKkI~g~gfgdIfk~~pVklr~rt~~sete~~p~~~~i~~~l~ 241 (627)
T KOG4348|consen 162 SAAAQDPAASASTLAGSTARTPSKSIGSEVAMGSVTQPKKIDGTGFGDIFKPAPVKLRLRTKFSETEKKPEKPFISSALS 241 (627)
T ss_pred hhhhcCcccchhhhcCcCCCCCcccccchhhcccccCcccccCCCcccccCCccceecccccccccccccccchhhhccC
Confidence 10000 0 0 00000000000000 0 0000 0000
Q ss_pred -----------------ccccCCCCCCCCC----CCCCCCCCCEEEEEeec--CCCeEEEEeCCceeEeeCCCeeecC
Q psy7077 263 -----------------IAVEEGPGIPADI----PSPIMGLGTVVPVKQNA--EPGWLAGELRGQTGWFPESYVEPCD 317 (336)
Q Consensus 263 -----------------~~~~~~~~~~~~~----~~Lsf~~Gd~V~V~~~~--~~~W~~g~~~G~~G~fPsnyV~~i~ 317 (336)
-....|++.+++. ++|.|++||+|.++.++ |-|||+|++||+.|+||-|||+.+.
T Consensus 242 asT~s~d~tktd~~~~tKtKeycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 242 ASTQSVDITKTDTAETTKTKEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ 319 (627)
T ss_pred ccccCccccccccccchhhhhheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence 0012233334443 35999999999988654 6699999999999999999999886
No 3
>KOG1029|consensus
Probab=99.96 E-value=2.1e-29 Score=248.96 Aligned_cols=270 Identities=23% Similarity=0.409 Sum_probs=187.7
Q ss_pred hhHHHHHHHhhccceeeccCCceEEecccc--cccccccccCCCcccchhhhhcc-ccc--------ccccccc------
Q psy7077 38 APLLLRILQNWAHQRLKITKDHTIKAKEEG--DLKDTQSSSDGSQDVFCSVHLQL-STK--------EKDLEVN------ 100 (336)
Q Consensus 38 ~~~~~~~~~~~~h~~lk~~k~~~i~~~ee~--~~~~~~~t~~~~r~~~~~~~~qi-~sk--------~~~l~~~------ 100 (336)
.|=|+--|+.+.|++++|..|+.|.+.+.. +--|.....++.-++|...+++. .+. ...++..
T Consensus 695 kyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~e~p~~v~Pv~~l~~~~~psas 774 (1118)
T KOG1029|consen 695 KYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAVETPGGVPPVQNLPPTMTPSAS 774 (1118)
T ss_pred EEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccCCCCCCCCchhcCCCCCCcccc
Confidence 455666678889999999999999998765 33478888888889996666553 211 1111111
Q ss_pred CcChh---hhHHH------hc------cc-cC--cc----EEEEecccCCCCCCCccccCCCEEEEEeecCCceecccCC
Q psy7077 101 NSNLD---DLKKT------LA------NM-MS--DK----YYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGD 158 (336)
Q Consensus 101 ~~~l~---el~~~------~~------~~-~~--~~----~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~Ww~g~~~~ 158 (336)
.++.. +-++. +. .+ +. .. +|+|+|.|.+..+++|+|.+||+|+|+++.+.||+|+..|
T Consensus 775 ~nq~a~~ad~~~~~~n~~~~t~~aA~p~~tapg~~eve~lq~iA~y~wrakke~dLsFskgd~I~VlekqemwW~G~v~g 854 (1118)
T KOG1029|consen 775 VNQIAVVADTKNESANAMGLTEGAAPPALTAPGQGEVEILQAIALYPWRAKKENDLSFSKGDTITVLEKQEMWWFGEVAG 854 (1118)
T ss_pred cccceeecccccchhhccCCCCCCCCccccCCCchhhhhhhHHhhccccccccccccccCCCeeeeehhccceecccccC
Confidence 11111 00000 00 00 01 11 7999999999999999999999999999999999999999
Q ss_pred Cccccccc----------------------------------------ccceeeeeeee-cccCCCCCCCCCCCCEEEEe
Q psy7077 159 RTARFRGV----------------------------------------SEYRRYRAIYE-FVSRNGDELSFQPGDIIMVP 197 (336)
Q Consensus 159 ~~g~~p~~----------------------------------------~~~~~~~al~d-f~a~~~~eLs~~~Gdii~v~ 197 (336)
..||||.+ .....+.++|. |.+....+|.|..||.|.|+
T Consensus 855 ~~GwFPksYVk~~~~~t~st~~~~s~es~sae~p~~~~~~a~~taa~v~~qeq~ya~~~~~e~vEq~dlt~~egd~iLvt 934 (1118)
T KOG1029|consen 855 EIGWFPKSYVKEVGAITGSTTKIESPESLSAEAPGAAASDATPTAAPVAPQEQLYAVYPYFEAVEQGDLTFHEGDEILVT 934 (1118)
T ss_pred ccCcCcHHhhhhccccccccccccCcccccccCccccccccCcccccccccceeEEEecccccccCCCccccccceEEEe
Confidence 99999853 01123445555 45588899999999999996
Q ss_pred eeecCCCCeEEEEeeCceeeeccc-ceeecCCCCCCCCCCCCCCCCccccccccCCCCcCCCCCCCccccCCCCCCCCCC
Q psy7077 198 VKQNAEPGWLAGELRGQTGWFPES-YVEPCDETGEVVPGTELPGDKHHLELIAEVPENISDSGGSGIAVEEGPGIPADIP 276 (336)
Q Consensus 198 ~~~~~~~gW~~g~~~g~~G~fP~~-yve~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~ 276 (336)
+ .++.||.|+++++.|.||+| |+.+.+..+...++...+..+++..+..-.+|.++....
T Consensus 935 e---kdgeww~gt~~~r~gifPan~y~r~~~q~gs~Tp~k~g~~~kkpeiAqVia~yvAs~peQ---------------- 995 (1118)
T KOG1029|consen 935 E---KDGEWWTGTCGDREGIFPANYYVRPKDQEGSGTPPKQGPTPKKPEIAQVIADYVASGPEQ---------------- 995 (1118)
T ss_pred e---ccCceeccccCCccccccccceeeehhccCCCCCCCCCCCCCCchhhhhhhhhhccCchh----------------
Confidence 4 46789999999999999999 566665444444333222222222221122333333222
Q ss_pred CCCCCCCCEEEEEeecCCCeEEEEe--CCc---eeEeeCCCeeecCCCCCCCCCCC
Q psy7077 277 SPIMGLGTVVPVKQNAEPGWLAGEL--RGQ---TGWFPESYVEPCDETGEVVPGTE 327 (336)
Q Consensus 277 ~Lsf~~Gd~V~V~~~~~~~W~~g~~--~G~---~G~fPsnyV~~i~~~~~~~~~~~ 327 (336)
|++..|++|.|.++.+.|||+|++ +|+ .||||++||+.+.+.+....|+.
T Consensus 996 -Lsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~raTPa~ 1050 (1118)
T KOG1029|consen 996 -LSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGRATPAT 1050 (1118)
T ss_pred -ccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCCCcCCCCC
Confidence 669999999999999999999986 554 59999999999988755555544
No 4
>KOG4226|consensus
Probab=99.96 E-value=9.5e-29 Score=219.90 Aligned_cols=187 Identities=21% Similarity=0.405 Sum_probs=142.8
Q ss_pred ccEEEEecccCCCCCCCccccCCCEEEEEeecCCceecccC-CCccccccc-----------------------------
Q psy7077 117 DKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIG-DRTARFRGV----------------------------- 166 (336)
Q Consensus 117 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~Ww~g~~~-~~~g~~p~~----------------------------- 166 (336)
.|+.+|.|||.++++.||.+++++...+++.+..||+.++. .++|++|++
T Consensus 4 ~~~vvak~dy~aq~~qeldikkner~~llddsk~wwrvrns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~kt~~k~ 83 (379)
T KOG4226|consen 4 EVIVVAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGLKTRRKT 83 (379)
T ss_pred EEEEEEEechhcccchhccccccceEEEEcCCccceeeecccccCCcccchhhhcccchhhhHHHHhhhhccccccccCC
Confidence 45789999999999999999999999999999999999886 677888753
Q ss_pred ---------------------ccceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceee
Q psy7077 167 ---------------------SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225 (336)
Q Consensus 167 ---------------------~~~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~ 225 (336)
.....+.+.|.|.++.++||++.+|+.|.|. ++..+|||+|..+|+.||||+|||++
T Consensus 84 s~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vm--EKssDGWWrG~~ng~VGWFPSNYv~E 161 (379)
T KOG4226|consen 84 SARDASPSPSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVM--EKSSDGWWRGSYNGQVGWFPSNYVTE 161 (379)
T ss_pred CccccCCCCCccccCCcchhhhcCCceEEEEeeccccccccccccCcEEEEE--EeccCcceecccCCeeccccccceeh
Confidence 0112377899999999999999999999995 56899999999999999999999988
Q ss_pred cCCCCCCCCCCCCC-----------CCCccccccccCCCCcCCCCCCCccccCCCCCCCCCCCCCCCCCCEEEEEee---
Q psy7077 226 CDETGEVVPGTELP-----------GDKHHLELIAEVPENISDSGGSGIAVEEGPGIPADIPSPIMGLGTVVPVKQN--- 291 (336)
Q Consensus 226 ~~~~~~~~~~~~~~-----------~~~~~~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lsf~~Gd~V~V~~~--- 291 (336)
..++.....++-.+ .....--.++.|++..++..+ |+|++||++.|+++
T Consensus 162 ~~ds~~gd~~s~~~~~~~A~a~n~~~s~vl~vVvaLYsFsssndeE-----------------LsFeKGerleivd~Pe~ 224 (379)
T KOG4226|consen 162 EVDSAAGDSPSFLSLRKAASASNGQGSRVLHVVVALYSFSSSNDEE-----------------LSFEKGERLEIVDKPEN 224 (379)
T ss_pred hccccccCCccceecchhhcccCCCCceEEEEEEEEecccCCChhh-----------------cccccCceeEeccCCCC
Confidence 66542221111000 000001123445555554444 66999999999977
Q ss_pred cCCCeEEEEeCCceeEeeCCCeeecCCCCCC
Q psy7077 292 AEPGWLAGELRGQTGWFPESYVEPCDETGEV 322 (336)
Q Consensus 292 ~~~~W~~g~~~G~~G~fPsnyV~~i~~~~~~ 322 (336)
+.|||.+...+|++|++|.|||+.+.+.+.+
T Consensus 225 DPdWwkarn~~G~vGLVPrNYv~vl~d~~~t 255 (379)
T KOG4226|consen 225 DPDWWKARNARGQVGLVPRNYVVVLSDGPST 255 (379)
T ss_pred CchHHhhcccCCccceeecceEEEeccCccc
Confidence 3456666678999999999999998766533
No 5
>KOG4225|consensus
Probab=99.94 E-value=1.3e-26 Score=218.18 Aligned_cols=196 Identities=24% Similarity=0.463 Sum_probs=140.4
Q ss_pred EEEEecccCCCCCCCccccCCCEEEEEee-cCCceecccCCCcccccccc---------------------cceeeeeee
Q psy7077 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARFRGVS---------------------EYRRYRAIY 176 (336)
Q Consensus 119 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~~g~~p~~~---------------------~~~~~~al~ 176 (336)
.++|+|+|+++...||+|++||+|.|+.+ |.+|+.|+.+|+.|+||.+. ....++|.|
T Consensus 232 ~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g~a~A~y 311 (489)
T KOG4225|consen 232 AARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREKAQPARPPPQQVLEQGEAIAKY 311 (489)
T ss_pred hhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcccccCcCCCCcccccccccccccC
Confidence 68999999999999999999999999999 99999999999999998640 123589999
Q ss_pred ecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEee--CceeeecccceeecCCCCCCCC--CCCC------CCCC----
Q psy7077 177 EFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCDETGEVVP--GTEL------PGDK---- 242 (336)
Q Consensus 177 df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~--g~~G~fP~~yve~~~~~~~~~~--~~~~------~~~~---- 242 (336)
+|.+..+.||++++|+.|.++ ...+..|++|... ++.|+||.+||+.+.......+ .... +...
T Consensus 312 ~F~~~s~~Els~~kge~v~L~--r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~~~~~~~~~~~~p~~p~~s~~~~~~~ 389 (489)
T KOG4225|consen 312 NFNADSPVELSLRKGERVTLT--RQVDENWYEGKIPGTNRQGIFPASYVEVIKSPKLELPLDYPDLPIPPRSSNELRPLS 389 (489)
T ss_pred CCCCCCchhcccccCceEEEE--EeccCceeeccccccccccccchhHhhhhhccccccccccCCCCCCcccchhhcccc
Confidence 999999999999999999985 3588899999975 7899999999998764321110 0000 0000
Q ss_pred -----------c------cccccccCCCCcCC----CCCCCcc---ccCCCCCCCCCCCCCCCCCCEEEEEeecCCCeEE
Q psy7077 243 -----------H------HLELIAEVPENISD----SGGSGIA---VEEGPGIPADIPSPIMGLGTVVPVKQNAEPGWLA 298 (336)
Q Consensus 243 -----------~------~~~~~a~~~~~~~~----~~~l~~~---~~~~~~~~~~~~~Lsf~~Gd~V~V~~~~~~~W~~ 298 (336)
. .+...+.-+-.... ....+-+ .+-+++.+.+..+|.|.+||+|.|+++.||||+.
T Consensus 390 ~~s~~~~~~~~~t~~~~q~~~n~~qepr~~~~~~~~~qt~~~~l~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfv 469 (489)
T KOG4225|consen 390 EDSMKNAWPQTHTQSSTQPPENFPQEPRVTEKNDAHSQTSSEPLKYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFV 469 (489)
T ss_pred cchhhhcccccccccccCCCCCcccccccccccCcccCCCCCcccceeccccCCCCchhheeccCCEEeeeecccCccee
Confidence 0 00000000000000 0000000 0011122233345999999999999999999999
Q ss_pred E--EeCCceeEeeCCCeeec
Q psy7077 299 G--ELRGQTGWFPESYVEPC 316 (336)
Q Consensus 299 g--~~~G~~G~fPsnyV~~i 316 (336)
| +..|+.|+||.|||+.+
T Consensus 470 Gts~rtg~fGtFPgnyV~~~ 489 (489)
T KOG4225|consen 470 GTSRRTGKFGTFPGNYVKRL 489 (489)
T ss_pred ccceecccccccCccccccC
Confidence 9 78999999999999853
No 6
>KOG4226|consensus
Probab=99.91 E-value=7.2e-25 Score=195.20 Aligned_cols=186 Identities=19% Similarity=0.325 Sum_probs=143.1
Q ss_pred HHhhccceeeccCCceEEecccccccccccccCCCcccchhhhhcccccc--ccccccCcC-----------hhhhHHHh
Q psy7077 45 LQNWAHQRLKITKDHTIKAKEEGDLKDTQSSSDGSQDVFCSVHLQLSTKE--KDLEVNNSN-----------LDDLKKTL 111 (336)
Q Consensus 45 ~~~~~h~~lk~~k~~~i~~~ee~~~~~~~~t~~~~r~~~~~~~~qi~sk~--~~l~~~~~~-----------l~el~~~~ 111 (336)
|-.+..|+|.+.|++++-+.++++.||..++.....+-+.+..++.+..+ ..|-.+-.. ..+..++.
T Consensus 13 y~aq~~qeldikkner~~llddsk~wwrvrns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~kt~~k~s~~~~~~sp 92 (379)
T KOG4226|consen 13 YTAQQDQELDIKKNERLWLLDDSKTWWRVRNSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGLKTRRKTSARDASPSP 92 (379)
T ss_pred hhcccchhccccccceEEEEcCCccceeeecccccCCcccchhhhcccchhhhHHHHhhhhccccccccCCCccccCCCC
Confidence 34567899999999999999999999999888777777766666554211 111111000 00000000
Q ss_pred c--------ccc-CccEEEEecccCCCCCCCccccCCCEEEEEee-cCCceecccCCCcccccccc--------------
Q psy7077 112 A--------NMM-SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARFRGVS-------------- 167 (336)
Q Consensus 112 ~--------~~~-~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~~g~~p~~~-------------- 167 (336)
+ .++ .+.-+++.|.|.++.+|||++.+|+.|.|+++ .++||+|..+|..||||++.
T Consensus 93 ~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds~~gd~~s 172 (379)
T KOG4226|consen 93 STDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDSAAGDSPS 172 (379)
T ss_pred CccccCCcchhhhcCCceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhccccccCCcc
Confidence 0 011 11147889999999999999999999999999 99999999999999999751
Q ss_pred -----------------cceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEe-eCceeeecccceeecCCC
Q psy7077 168 -----------------EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDET 229 (336)
Q Consensus 168 -----------------~~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~-~g~~G~fP~~yve~~~~~ 229 (336)
....++|||.|.+.+.+||+|++||.+.|+.....++.||.++. +|+.|+||.|||+.+.+.
T Consensus 173 ~~~~~~~A~a~n~~~s~vl~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~ 252 (379)
T KOG4226|consen 173 FLSLRKAASASNGQGSRVLHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDG 252 (379)
T ss_pred ceecchhhcccCCCCceEEEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccC
Confidence 12347899999999999999999999999877778999999995 799999999999998865
Q ss_pred C
Q psy7077 230 G 230 (336)
Q Consensus 230 ~ 230 (336)
.
T Consensus 253 ~ 253 (379)
T KOG4226|consen 253 P 253 (379)
T ss_pred c
Confidence 4
No 7
>KOG4348|consensus
Probab=99.85 E-value=2.7e-22 Score=188.60 Aligned_cols=183 Identities=20% Similarity=0.450 Sum_probs=137.3
Q ss_pred HHhhccceeeccCCceEEecccccccccccccCCCcccc-hhhhhcccccccc--cccc--CcChhhh--H------HHh
Q psy7077 45 LQNWAHQRLKITKDHTIKAKEEGDLKDTQSSSDGSQDVF-CSVHLQLSTKEKD--LEVN--NSNLDDL--K------KTL 111 (336)
Q Consensus 45 ~~~~~h~~lk~~k~~~i~~~ee~~~~~~~~t~~~~r~~~-~~~~~qi~sk~~~--l~~~--~~~l~el--~------~~~ 111 (336)
|...-.++|.++.|+.|.....-+.-|.+...++-+++| ++..+++...+++ +.+. ...|-+. + ++.
T Consensus 10 y~a~hddelti~vgeii~nvkk~e~gw~egelngrrg~fpdnfV~eik~e~k~d~l~nk~~r~~l~q~~s~n~l~~~q~v 89 (627)
T KOG4348|consen 10 YDAVHDDELTIRVGEIIRNVKKLEEGWLEGELNGRRGQFPDNFVVEIKVEFKDDDLVNKLSRDSLVQMTSRNPLTVHQQV 89 (627)
T ss_pred cccccCceeeEeHHHHHHhhhhhccceeeceeccccccCCchhhhhhhhhcccccccccccccchhhcccCCCccccCcc
Confidence 344456789999999988864444458888888888888 4444444443222 2111 0111110 0 000
Q ss_pred -cccc----CccEEEEecccCCCCCCCccccCCCEEEEEee-cCCceecccCCCccccccc-------------------
Q psy7077 112 -ANMM----SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARFRGV------------------- 166 (336)
Q Consensus 112 -~~~~----~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~~g~~p~~------------------- 166 (336)
.+.. ....|+++|.|.++++|||+|..||+|.+++. ++|||.|..+|+.|.||++
T Consensus 90 ~rtn~~~q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~~sde~~~aqd~~ 169 (627)
T KOG4348|consen 90 ERTNPPPQPQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPTPSDESAAAQDPA 169 (627)
T ss_pred cccCCCCCccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCCCCcchhhhcCcc
Confidence 1111 12289999999999999999999999999998 9999999999999998742
Q ss_pred --------------------------------------------------------------------------------
Q psy7077 167 -------------------------------------------------------------------------------- 166 (336)
Q Consensus 167 -------------------------------------------------------------------------------- 166 (336)
T Consensus 170 ~S~stlagst~~~ps~s~~SE~a~gsv~qPKkI~g~gfgdIfk~~pVklr~rt~~sete~~p~~~~i~~~l~asT~s~d~ 249 (627)
T KOG4348|consen 170 ASASTLAGSTARTPSKSIGSEVAMGSVTQPKKIDGTGFGDIFKPAPVKLRLRTKFSETEKKPEKPFISSALSASTQSVDI 249 (627)
T ss_pred cchhhhcCcCCCCCcccccchhhcccccCcccccCCCcccccCCccceecccccccccccccccchhhhccCccccCccc
Confidence
Q ss_pred ---------ccceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceeecC
Q psy7077 167 ---------SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227 (336)
Q Consensus 167 ---------~~~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~~ 227 (336)
....+|+++|.|++++.|||+|++||+|.++.+...+.|||+|+++|+.|.||-|||+.+.
T Consensus 250 tktd~~~~tKtKeycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 250 TKTDTAETTKTKEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ 319 (627)
T ss_pred cccccccchhhhhheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence 0123599999999999999999999999998777888999999999999999999999877
No 8
>KOG4225|consensus
Probab=99.80 E-value=1.3e-19 Score=171.01 Aligned_cols=130 Identities=28% Similarity=0.519 Sum_probs=104.3
Q ss_pred eeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceeecCCCCCCCCCCCCCC-CCccccccc
Q psy7077 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPGTELPG-DKHHLELIA 249 (336)
Q Consensus 171 ~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~~~~~~~~~~~~~~~-~~~~~~~~a 249 (336)
-++|+|+|+++...||+|.+||||.|+ .+.+..|+.|+.+|+.|+||+|||+.+.......+....+. .....+++|
T Consensus 232 ~aralf~F~~qt~kEL~~~kGDIVyI~--rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g~a~A 309 (489)
T KOG4225|consen 232 AARALFDFEAQTPKELPFNKGDIVYIL--RKVDQNWYEGEHHGRVGIFPASYVEILTPREKAQPARPPPQQVLEQGEAIA 309 (489)
T ss_pred hhhheeccccCCccccccCCCCEEEEE--eeccCceeeeeecceecceechheeecCcccccCcCCCCcccccccccccc
Confidence 478999999999999999999999995 56899999999999999999999999987444322221110 111224567
Q ss_pred cCCCCcCCCCCCCccccCCCCCCCCCCCCCCCCCCEEEEEeecCCCeEEEEeC--CceeEeeCCCeeecCCC
Q psy7077 250 EVPENISDSGGSGIAVEEGPGIPADIPSPIMGLGTVVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCDET 319 (336)
Q Consensus 250 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lsf~~Gd~V~V~~~~~~~W~~g~~~--G~~G~fPsnyV~~i~~~ 319 (336)
.|++++....+ |+|++||.|.++++++..|++|..- |++|+||.+||+.+...
T Consensus 310 ~y~F~~~s~~E-----------------ls~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~ 364 (489)
T KOG4225|consen 310 KYNFNADSPVE-----------------LSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSP 364 (489)
T ss_pred cCCCCCCCchh-----------------cccccCceEEEEEeccCceeeccccccccccccchhHhhhhhcc
Confidence 77777666555 4599999999999999999999875 89999999999987643
No 9
>KOG3601|consensus
Probab=99.65 E-value=1.1e-16 Score=138.70 Aligned_cols=196 Identities=14% Similarity=0.172 Sum_probs=135.6
Q ss_pred EEEecccCCCCCCCccccCCCEEEEEee--cCCceecccCCCcccccccc----cceeeeeeeecccCCCCCCCCCCCCE
Q psy7077 120 YIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTARFRGVS----EYRRYRAIYEFVSRNGDELSFQPGDI 193 (336)
Q Consensus 120 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~Ww~g~~~~~~g~~p~~~----~~~~~~al~df~a~~~~eLs~~~Gdi 193 (336)
++++++|.+...+||+|.+||.+.+.+. +-+|...+..|..|..|.+. ....+.+++++.......+..+.|+.
T Consensus 3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~~~~~wve~~i~r~~ae~~l~~~~~G~f 82 (222)
T KOG3601|consen 3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRMKPHEWVEGLIPRPLAEDLLSKKRDGDF 82 (222)
T ss_pred hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCcccccccccccceecccccchhhhhhhccCcchh
Confidence 4678999999999999999999999887 56799999999999998763 34567788999888888888999999
Q ss_pred EEEeeeecCCCCeEEEEeeCceeeecccceeecCCCCC------CCC----CCCC--CCCCccccccccCCCC---cCCC
Q psy7077 194 IMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGE------VVP----GTEL--PGDKHHLELIAEVPEN---ISDS 258 (336)
Q Consensus 194 i~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~~~~~~------~~~----~~~~--~~~~~~~~~~a~~~~~---~~~~ 258 (336)
+... .+..+||+.+.++...|.+|.++|++-..... ++. .-.+ +..+.....++.+.+. ....
T Consensus 83 l~r~--s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~rt~s~~r~~qi~l~d~~~~~~~~~~~ 160 (222)
T KOG3601|consen 83 LIRL--SESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTASQSRNQQIFLRDMEPPPAPLPPA 160 (222)
T ss_pred hhhh--hhcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccCcccccccceeeeecccccccccCCCC
Confidence 8774 56899999999999999999999975432100 000 0000 1111000111111100 0000
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCEEEEEeecCCCeEEEEeCCceeEeeCCCeeecC
Q psy7077 259 GGSGIAVEEGPGIPADIPSPIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 317 (336)
Q Consensus 259 ~~l~~~~~~~~~~~~~~~~Lsf~~Gd~V~V~~~~~~~W~~g~~~G~~G~fPsnyV~~i~ 317 (336)
.+.-..+..++.....-.+|.|+.||.++|+...+.-||.|.+.|+.|+||++||...+
T Consensus 161 ~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~d 219 (222)
T KOG3601|consen 161 PTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPSD 219 (222)
T ss_pred ccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCccccccc
Confidence 01011111111111222348899999999999999999999999999999999997654
No 10
>KOG4792|consensus
Probab=99.64 E-value=4.9e-16 Score=135.64 Aligned_cols=150 Identities=21% Similarity=0.308 Sum_probs=98.5
Q ss_pred ceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEe-eCceeeecccceeecCCCCCCCCC---CC-CCCCCc
Q psy7077 169 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDETGEVVPG---TE-LPGDKH 243 (336)
Q Consensus 169 ~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~-~g~~G~fP~~yve~~~~~~~~~~~---~~-~~~~~~ 243 (336)
...++++|||.+.+.++|.|++|+++.+. ++.+..||.++. .|++|++|.+||+...+....... +. ...-..
T Consensus 124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~--~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si~q 201 (293)
T KOG4792|consen 124 AEYVRALFDFNGNDEEDLPFKKGEILRIR--DKPEEQWWNARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSIPQ 201 (293)
T ss_pred hhheeeeeccCCCccccCCcccCcEEEEe--cCcHHHhhhhhccCCcccceechHHHhhhhhhcccccccCCcccccCCC
Confidence 45677899999999999999999999994 567888999996 699999999999987754322110 00 000000
Q ss_pred cccccccCCCCcCCCCC-CC----cccc----CCCCCCCCCC-CCCCCCCCEEEEEeecCCCeEEEEeCCceeEeeCCCe
Q psy7077 244 HLELIAEVPENISDSGG-SG----IAVE----EGPGIPADIP-SPIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYV 313 (336)
Q Consensus 244 ~~~~~a~~~~~~~~~~~-l~----~~~~----~~~~~~~~~~-~Lsf~~Gd~V~V~~~~~~~W~~g~~~G~~G~fPsnyV 313 (336)
+...+...+........ +. .+++ ..++..++.+ .|.+++||+|.|.++.-+|-|+|++||+.|.||-.||
T Consensus 202 ~~~g~e~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThv 281 (293)
T KOG4792|consen 202 SGGGAERFSSASTSSDTPLPLQQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHV 281 (293)
T ss_pred CCCCCCCCCCCCcccCCcCccccCCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeE
Confidence 00011111110000000 00 0000 0011122222 2899999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy7077 314 EPCDETG 320 (336)
Q Consensus 314 ~~i~~~~ 320 (336)
+..+...
T Consensus 282 rf~d~~~ 288 (293)
T KOG4792|consen 282 RFTDVQN 288 (293)
T ss_pred EeeccCC
Confidence 9987643
No 11
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.47 E-value=4.7e-14 Score=96.83 Aligned_cols=49 Identities=45% Similarity=0.935 Sum_probs=43.7
Q ss_pred eeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeeccccee
Q psy7077 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224 (336)
Q Consensus 174 al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve 224 (336)
|+|+|.++.++||+|++||+|.|+ .+.+++||+|+.+|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~--~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVL--EKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEE--EESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEE--EeCCCCEEEEEECCEEEEECHHhCC
Confidence 789999999999999999999996 4478999999999999999999996
No 12
>KOG4792|consensus
Probab=99.46 E-value=9.8e-14 Score=121.33 Aligned_cols=109 Identities=26% Similarity=0.461 Sum_probs=90.7
Q ss_pred EEEEecccCCCCCCCccccCCCEEEEEee-cCCceecccC-CCccccccc------------------------------
Q psy7077 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIG-DRTARFRGV------------------------------ 166 (336)
Q Consensus 119 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~-~~~g~~p~~------------------------------ 166 (336)
+.+++|||.+++.+||.|++|+++.++++ ++.||.+++. |+.|.+|..
T Consensus 126 ~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si~q~~~g 205 (293)
T KOG4792|consen 126 YVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSIPQSGGG 205 (293)
T ss_pred heeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhcccccccCCcccccCCCCCCC
Confidence 67789999999999999999999999999 8999999875 777766521
Q ss_pred -------------------ccceeeeeeeecccC--CCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceee
Q psy7077 167 -------------------SEYRRYRAIYEFVSR--NGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225 (336)
Q Consensus 167 -------------------~~~~~~~al~df~a~--~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~ 225 (336)
.....++++++..+. +...|.+++||+|.|+ ....+|-|+|+++|+.|.||.+||+.
T Consensus 206 ~e~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVT--k~ninGqwegElnGk~G~fPfThvrf 283 (293)
T KOG4792|consen 206 AERFSSASTSSDTPLPLQQNLPAYARVIQKRVPNAYDKTALALEVGDIVKVT--KKNINGQWEGELNGKIGHFPFTHVRF 283 (293)
T ss_pred CCCCCCCCcccCCcCccccCCChheeeehhcCCCccChhhhhhhcCcEEEEE--eeccCceeeeeecCccccccceeEEe
Confidence 012346777776543 6678999999999996 45788999999999999999999999
Q ss_pred cCCC
Q psy7077 226 CDET 229 (336)
Q Consensus 226 ~~~~ 229 (336)
.+..
T Consensus 284 ~d~~ 287 (293)
T KOG4792|consen 284 TDVQ 287 (293)
T ss_pred eccC
Confidence 8754
No 13
>KOG3632|consensus
Probab=99.43 E-value=3.6e-13 Score=137.62 Aligned_cols=135 Identities=24% Similarity=0.423 Sum_probs=94.4
Q ss_pred eeeeeeeecccC--------CCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceeecCCCC-----------
Q psy7077 170 RRYRAIYEFVSR--------NGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG----------- 230 (336)
Q Consensus 170 ~~~~al~df~a~--------~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~~~~~----------- 230 (336)
..++|+|||++. ...||.|++||||.|+ .+++.+|+|.|+++|++|++|+|+|.++.-..
T Consensus 1139 rifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~-GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~eq~~~r~rqG~ 1217 (1335)
T KOG3632|consen 1139 RIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVL-GDKDADGFYMGELNGRRGLIPCNMVAEQPVDNEQTDRRWRQGL 1217 (1335)
T ss_pred eeeEeeeccCccccCCCCChhhhccccccCcEEEEe-ccccccceeecccccccccccccccccccCCcHHHHHHHHhcc
Confidence 568999999874 5679999999999998 46788999999999999999999998865322
Q ss_pred -CCCCC------CCCC--------CCCccccccccCCCCcCCCCCCCccccCCCCCCCCCCCCCCCCCCEEEEEee-cCC
Q psy7077 231 -EVVPG------TELP--------GDKHHLELIAEVPENISDSGGSGIAVEEGPGIPADIPSPIMGLGTVVPVKQN-AEP 294 (336)
Q Consensus 231 -~~~~~------~~~~--------~~~~~~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lsf~~Gd~V~V~~~-~~~ 294 (336)
...+. ...+ ...+.+-+..+|+...+..+- +...+|.|..||||+|.++ +++
T Consensus 1218 lPsv~~~e~~~gs~~s~g~~k~vp~~p~~mvaa~dydpqeSSpg~------------dgeAelafraGdIitVfg~mddd 1285 (1335)
T KOG3632|consen 1218 LPSVPTEEMRKGSAFSDGQQKMVPWPPRQMVAASDYDPQESSPGL------------DGEAELAFRAGDIITVFGKMDDD 1285 (1335)
T ss_pred CCCCCchhhhcccccCCCCccccCCchhhhhhhhcCCcccCCCCc------------ccceeeccccCCeEEeeccccCC
Confidence 00000 0000 011112222222222221110 1113477999999999977 567
Q ss_pred CeEEEEeCCceeEeeCCCeeecC
Q psy7077 295 GWLAGELRGQTGWFPESYVEPCD 317 (336)
Q Consensus 295 ~W~~g~~~G~~G~fPsnyV~~i~ 317 (336)
|+++|++||+.|++|+||++-.+
T Consensus 1286 gfyyGelngqkglvpsnfle~p~ 1308 (1335)
T KOG3632|consen 1286 GFYYGELNGQKGLVPSNFLEAPN 1308 (1335)
T ss_pred cccccccCCccCccccccccCCC
Confidence 99999999999999999999764
No 14
>KOG2996|consensus
Probab=99.41 E-value=2.3e-13 Score=132.70 Aligned_cols=50 Identities=34% Similarity=0.651 Sum_probs=41.0
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEeecC--CCeEEEEeCCceeEeeCCCeeecC
Q psy7077 268 GPGIPADIPSPIMGLGTVVPVKQNAE--PGWLAGELRGQTGWFPESYVEPCD 317 (336)
Q Consensus 268 ~~~~~~~~~~Lsf~~Gd~V~V~~~~~--~~W~~g~~~G~~G~fPsnyV~~i~ 317 (336)
+.++..+..+|||++||+|.|+.+.+ .|||.|+.+|++||||++||+.-+
T Consensus 812 Ydf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~ 863 (865)
T KOG2996|consen 812 YDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDD 863 (865)
T ss_pred cccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccC
Confidence 33334444569999999999998864 599999999999999999999754
No 15
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.33 E-value=2e-12 Score=88.69 Aligned_cols=37 Identities=38% Similarity=0.747 Sum_probs=33.5
Q ss_pred CCCCCCCEEEEEeecCCCeEEEEeCCceeEeeCCCee
Q psy7077 278 PIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314 (336)
Q Consensus 278 Lsf~~Gd~V~V~~~~~~~W~~g~~~G~~G~fPsnyV~ 314 (336)
|+|++||+|.|+++.+++||.|+.+|++|+||+|||+
T Consensus 13 Ls~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 13 LSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp -EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred eeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 6699999999999999999999999999999999996
No 16
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.33 E-value=1.6e-12 Score=91.38 Aligned_cols=55 Identities=49% Similarity=0.992 Sum_probs=47.4
Q ss_pred eeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceeec
Q psy7077 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226 (336)
Q Consensus 171 ~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~ 226 (336)
.++|++||.+..+++|+|++||+|.|+ .+..+++||.|+.+|+.||||++||+++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~-~~~~~~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVL-GEKDDDGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEE-EEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEE-EeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence 478999999999999999999999996 2457779999999999999999999874
No 17
>KOG2996|consensus
Probab=99.26 E-value=4.7e-12 Score=123.72 Aligned_cols=57 Identities=40% Similarity=0.824 Sum_probs=50.9
Q ss_pred eeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceeecC
Q psy7077 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227 (336)
Q Consensus 171 ~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~~ 227 (336)
.++|-|||.+++..||||+.||+|.++..-..+.|||+|+.+|+.||||++||++-+
T Consensus 807 ~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~ 863 (865)
T KOG2996|consen 807 TAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDD 863 (865)
T ss_pred eeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccC
Confidence 467889999999999999999999997655567899999999999999999998754
No 18
>KOG2070|consensus
Probab=99.17 E-value=2e-11 Score=117.38 Aligned_cols=58 Identities=47% Similarity=0.843 Sum_probs=53.0
Q ss_pred cceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceeecC
Q psy7077 168 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227 (336)
Q Consensus 168 ~~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~~ 227 (336)
..-.++|-|.|.+.+.|||+|.+||+|.|+ +..++|||+|..+|++||||+|||.++.
T Consensus 16 ~pLvvrAkf~F~gsNnDELsf~KgDvItVT--q~eeGGWWEGTlng~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 16 NPLVVRAKFNFQGSNNDELSFSKGDVITVT--QVEEGGWWEGTLNGRTGWFPSNYVREIK 73 (661)
T ss_pred CceEEEEEeecccCCCceeccccCCEEEEE--EeccCcceeccccCccCccchHHHHHHh
Confidence 345689999999999999999999999996 4578999999999999999999999887
No 19
>KOG2070|consensus
Probab=99.13 E-value=2.1e-11 Score=117.23 Aligned_cols=56 Identities=34% Similarity=0.613 Sum_probs=48.0
Q ss_pred ccccCCCCcCCCCCCCccccCCCCCCCCCCCCCCCCCCEEEEEeecCCCeEEEEeCCceeEeeCCCeeecCCC
Q psy7077 247 LIAEVPENISDSGGSGIAVEEGPGIPADIPSPIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319 (336)
Q Consensus 247 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lsf~~Gd~V~V~~~~~~~W~~g~~~G~~G~fPsnyV~~i~~~ 319 (336)
+-|.+.+..++++++ +|.+||+|+|.+..++|||+|.++|++||||+|||..|...
T Consensus 20 vrAkf~F~gsNnDEL-----------------sf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik~e 75 (661)
T KOG2070|consen 20 VRAKFNFQGSNNDEL-----------------SFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIKSE 75 (661)
T ss_pred EEEEeecccCCCcee-----------------ccccCCEEEEEEeccCcceeccccCccCccchHHHHHHhhc
Confidence 345666777766665 49999999999999999999999999999999999988744
No 20
>KOG3601|consensus
Probab=99.10 E-value=6.2e-11 Score=103.18 Aligned_cols=163 Identities=18% Similarity=0.241 Sum_probs=116.9
Q ss_pred hHHHHHHHhhccceeeccCCceEEecccccc-cccccccCCCcccchhhhhccccccccccccCcChhhhHHHhccccCc
Q psy7077 39 PLLLRILQNWAHQRLKITKDHTIKAKEEGDL-KDTQSSSDGSQDVFCSVHLQLSTKEKDLEVNNSNLDDLKKTLANMMSD 117 (336)
Q Consensus 39 ~~~~~~~~~~~h~~lk~~k~~~i~~~ee~~~-~~~~~t~~~~r~~~~~~~~qi~sk~~~l~~~~~~l~el~~~~~~~~~~ 117 (336)
++|+-.+.+....+|+|.||..+++...-+. .|+-....+. ...++.|-..++ ..
T Consensus 3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~--------------~g~~P~Nai~~~----------~~ 58 (222)
T KOG3601|consen 3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGP--------------EGFIPKNAIRMK----------PH 58 (222)
T ss_pred hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCc--------------cccCcccccccc----------cc
Confidence 4566667788899999999999888633321 1222222221 111222221111 22
Q ss_pred cEEEEecccCCCCCCCccccCCCEEEEEee-cCCceecccCCCcccccc-------------------------------
Q psy7077 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARFRG------------------------------- 165 (336)
Q Consensus 118 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~~g~~p~------------------------------- 165 (336)
.+|-+++++...+..++..+.|+.+..+++ +.+|+.|.++...|.++.
T Consensus 59 ~wve~~i~r~~ae~~l~~~~~G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~rt~s 138 (222)
T KOG3601|consen 59 EWVEGLIPRPLAEDLLSKKRDGDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTAS 138 (222)
T ss_pred cceecccccchhhhhhhccCcchhhhhhhhcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccCcccc
Confidence 368889999999999999999999888877 899999887655543311
Q ss_pred ---------------------cccceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeeccccee
Q psy7077 166 ---------------------VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224 (336)
Q Consensus 166 ---------------------~~~~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve 224 (336)
.......+++|+|+++.+.+|.|++||.+.|+ ...+..||.|+..|+.|+||++|+.
T Consensus 139 ~~r~~qi~l~d~~~~~~~~~~~~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~--~~ss~~ww~Gs~lg~agiFpagyv~ 216 (222)
T KOG3601|consen 139 QSRNQQIFLRDMEPPPAPLPPAPTNYYQQALYDFQPQPPGQLAFRRGQQIQVL--DSSSPFWWFGSKLGRAGIFPAGYVA 216 (222)
T ss_pred cccceeeeecccccccccCCCCccchhhhhcCCCCCCCchhhccccCCcceee--cCCCcchhhccccCceeeecCcccc
Confidence 01223467999999999999999999999994 5688899999999999999999986
Q ss_pred ecC
Q psy7077 225 PCD 227 (336)
Q Consensus 225 ~~~ 227 (336)
..+
T Consensus 217 p~d 219 (222)
T KOG3601|consen 217 PSD 219 (222)
T ss_pred ccc
Confidence 543
No 21
>KOG3632|consensus
Probab=99.10 E-value=1.2e-10 Score=119.52 Aligned_cols=109 Identities=26% Similarity=0.508 Sum_probs=91.9
Q ss_pred EEEEecccCCCC--------CCCccccCCCEEEEEee--cCCceecccCCCccccccc----------------------
Q psy7077 119 YYIAAYPYDSTE--------PGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTARFRGV---------------------- 166 (336)
Q Consensus 119 ~~~al~dy~~~~--------~~eLs~~~Gd~i~v~~~--~~~Ww~g~~~~~~g~~p~~---------------------- 166 (336)
.++|||||++-. ..||+|++|++|.|..+ .++++.|+++|+.|.+|.+
T Consensus 1140 ifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~eq~~~r~rqG~lP 1219 (1335)
T KOG3632|consen 1140 IFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDNEQTDRRWRQGLLP 1219 (1335)
T ss_pred eeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCcHHHHHHHHhccCC
Confidence 899999999753 45999999999999987 6889999999999888753
Q ss_pred ---------------------c-cceeeeeeeecccC-------CCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceee
Q psy7077 167 ---------------------S-EYRRYRAIYEFVSR-------NGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 217 (336)
Q Consensus 167 ---------------------~-~~~~~~al~df~a~-------~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~ 217 (336)
+ ....++|.|||.++ ...+|.|..||||.|. ...+++|+++|+++|++|+
T Consensus 1220 sv~~~e~~~gs~~s~g~~k~vp~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVf-g~mdddgfyyGelngqkgl 1298 (1335)
T KOG3632|consen 1220 SVPTEEMRKGSAFSDGQQKMVPWPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVF-GKMDDDGFYYGELNGQKGL 1298 (1335)
T ss_pred CCCchhhhcccccCCCCccccCCchhhhhhhhcCCcccCCCCcccceeeccccCCeEEee-ccccCCcccccccCCccCc
Confidence 0 12356789999876 3468999999999997 4568889999999999999
Q ss_pred ecccceeecCC
Q psy7077 218 FPESYVEPCDE 228 (336)
Q Consensus 218 fP~~yve~~~~ 228 (336)
+|++|++..+.
T Consensus 1299 vpsnfle~p~~ 1309 (1335)
T KOG3632|consen 1299 VPSNFLEAPNA 1309 (1335)
T ss_pred cccccccCCCc
Confidence 99999987753
No 22
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.09 E-value=1.6e-10 Score=81.22 Aligned_cols=39 Identities=41% Similarity=0.835 Sum_probs=34.1
Q ss_pred CCCCCCCEEEEE-eecCCCeEEEEeCCceeEeeCCCeeec
Q psy7077 278 PIMGLGTVVPVK-QNAEPGWLAGELRGQTGWFPESYVEPC 316 (336)
Q Consensus 278 Lsf~~Gd~V~V~-~~~~~~W~~g~~~G~~G~fPsnyV~~i 316 (336)
|+|++||+|.|+ ++.+++||.++.+|+.||||++||+++
T Consensus 16 Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 16 LSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp -EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred eEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence 669999999999 888889999999999999999999874
No 23
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.06 E-value=4.5e-10 Score=78.48 Aligned_cols=55 Identities=44% Similarity=0.900 Sum_probs=48.8
Q ss_pred eeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEee-Cceeeecccceeec
Q psy7077 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPC 226 (336)
Q Consensus 170 ~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~-g~~G~fP~~yve~~ 226 (336)
..++|+|+|.+..+++|+|++||.|.+. ...+++||.++.. |+.||||.+|++.+
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~--~~~~~~w~~~~~~~~~~G~vP~~~v~~~ 58 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVL--EKSDDGWWKGRLGRGKEGLFPSNYVEEI 58 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEE--EcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence 4678999999999999999999999995 3458899999986 99999999999863
No 24
>KOG2199|consensus
Probab=99.06 E-value=4.1e-11 Score=112.77 Aligned_cols=59 Identities=37% Similarity=0.727 Sum_probs=53.7
Q ss_pred ccceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceeecC
Q psy7077 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227 (336)
Q Consensus 167 ~~~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~~ 227 (336)
...+++||||||++...+||+|++||||.|+ ++.++.||.|++++..|+||+|||...-
T Consensus 213 ~~~rkVRALYDFeAaE~nELsFkaGdIItVL--d~s~~~WWKG~~~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 213 TVVRKVRALYDFEAAEDNELSFKAGDIITVL--DDSDPNWWKGENHRGIGLFPSNFVTADL 271 (462)
T ss_pred ccchhhhhhhcccccCCCccceecCcEEEEc--ccCCcchhccccCCcccccchhhhhhhh
Confidence 4567899999999999999999999999995 6789999999999999999999998644
No 25
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.06 E-value=1.6e-10 Score=78.81 Aligned_cols=46 Identities=43% Similarity=0.897 Sum_probs=40.0
Q ss_pred eeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEee--Cceeeecc
Q psy7077 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPE 220 (336)
Q Consensus 173 ~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~--g~~G~fP~ 220 (336)
+|+|+|.++.++||+|++||.|.|+ +..+++||.++.. |+.||||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~--~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVL--EKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEE--EESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEE--EecCCCEEEEEECCCCcEEEeeC
Confidence 5899999999999999999999996 4467799999974 68999996
No 26
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.01 E-value=7.1e-10 Score=76.47 Aligned_cols=51 Identities=49% Similarity=0.963 Sum_probs=45.7
Q ss_pred eeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeC-ceeeeccccee
Q psy7077 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG-QTGWFPESYVE 224 (336)
Q Consensus 172 ~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g-~~G~fP~~yve 224 (336)
++|+|+|.++.+++|+|.+||.|.+. ...++|||.++..+ +.||||.+|++
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~--~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVL--EKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEE--EcCCCCeEEEEECCCCEEEEccccCc
Confidence 67999999999999999999999995 34678999999865 99999999986
No 27
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.00 E-value=2.5e-10 Score=77.88 Aligned_cols=45 Identities=24% Similarity=0.637 Sum_probs=40.4
Q ss_pred EEecccCCCCCCCccccCCCEEEEEee-cCCceecccC--CCcccccc
Q psy7077 121 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIG--DRTARFRG 165 (336)
Q Consensus 121 ~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~--~~~g~~p~ 165 (336)
+|+|+|.++.++||+|++||++.|+++ +++||.++.. ++.|+||.
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 589999999999999999999999998 8899999986 58899984
No 28
>KOG1118|consensus
Probab=98.99 E-value=2.1e-10 Score=104.76 Aligned_cols=58 Identities=36% Similarity=0.706 Sum_probs=53.6
Q ss_pred ceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceeecCC
Q psy7077 169 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 228 (336)
Q Consensus 169 ~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~~~ 228 (336)
.+.|+|+|||++++.+||.|++||+|.|+ ...+.+||.|+..|.+|+||.|||+.+.+
T Consensus 306 ~p~cralYdFepenEgEL~fkeGDlI~l~--~QIdenWyeG~~~g~sG~FPvnYv~vlvp 363 (366)
T KOG1118|consen 306 QPCCRALYDFEPENEGELDFKEGDLITLT--NQIDENWYEGEKHGESGMFPVNYVEVLVP 363 (366)
T ss_pred chhheeeeccCCCCCCccCcccCceeeeh--hhcCcchhhheecCccCccccceeEEecc
Confidence 46799999999999999999999999995 56899999999999999999999998764
No 29
>KOG2199|consensus
Probab=98.81 E-value=1.4e-09 Score=102.59 Aligned_cols=48 Identities=23% Similarity=0.542 Sum_probs=46.4
Q ss_pred EEEEecccCCCCCCCccccCCCEEEEEee-cCCceecccCCCccccccc
Q psy7077 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARFRGV 166 (336)
Q Consensus 119 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~~g~~p~~ 166 (336)
.++|||||++.+++||+|++||+|.|++. +.+||.|++.+..|.||.+
T Consensus 217 kVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsn 265 (462)
T KOG2199|consen 217 KVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSN 265 (462)
T ss_pred hhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchh
Confidence 78999999999999999999999999999 9999999999999999976
No 30
>KOG1118|consensus
Probab=98.76 E-value=5.7e-09 Score=95.50 Aligned_cols=41 Identities=27% Similarity=0.556 Sum_probs=38.6
Q ss_pred CCCCCCCEEEEEeecCCCeEEEEeCCceeEeeCCCeeecCC
Q psy7077 278 PIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318 (336)
Q Consensus 278 Lsf~~Gd~V~V~~~~~~~W~~g~~~G~~G~fPsnyV~~i~~ 318 (336)
|.|++||+|+|+.+.|++||.|+..|.+|+||.|||+.+-+
T Consensus 323 L~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlvp 363 (366)
T KOG1118|consen 323 LDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLVP 363 (366)
T ss_pred cCcccCceeeehhhcCcchhhheecCccCccccceeEEecc
Confidence 44999999999999999999999999999999999998864
No 31
>KOG2546|consensus
Probab=98.75 E-value=3.6e-09 Score=100.56 Aligned_cols=52 Identities=29% Similarity=0.505 Sum_probs=44.6
Q ss_pred ccCCCCcCCCCCCCccccCCCCCCCCCCCCCCCCCCEEEEEeecCCCeEEEEeCCceeEeeCCCeeecC
Q psy7077 249 AEVPENISDSGGSGIAVEEGPGIPADIPSPIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 317 (336)
Q Consensus 249 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lsf~~Gd~V~V~~~~~~~W~~g~~~G~~G~fPsnyV~~i~ 317 (336)
+-|++..+..+++ +|.+|-+|.|++++|||||+|..+|.+|+||.|||+.+-
T Consensus 428 ~iydy~~~KddeL-----------------sf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 428 AIYDYTADKDDEL-----------------SFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK 479 (483)
T ss_pred hhccccccccccc-----------------ccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence 4456666665554 499999999999999999999999999999999999774
No 32
>KOG0162|consensus
Probab=98.73 E-value=5.4e-09 Score=104.91 Aligned_cols=54 Identities=39% Similarity=0.799 Sum_probs=50.4
Q ss_pred eeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceee
Q psy7077 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225 (336)
Q Consensus 170 ~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~ 225 (336)
+.|.|+|+|.+++.+||+|++||+|.+. .++..|||.|+.+|+.||||.+||++
T Consensus 1052 p~~~A~Y~y~gq~~dEls~~~~diIei~--~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIM--REDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred cceeeeccCCCCCcccccccCCCEEEEe--ccCCCcchhhccCCcccccccccccc
Confidence 6799999999999999999999999995 56788999999999999999999975
No 33
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=98.71 E-value=3e-08 Score=69.04 Aligned_cols=39 Identities=33% Similarity=0.740 Sum_probs=34.9
Q ss_pred CCCCCCCEEEEEeecCCCeEEEEeC-CceeEeeCCCeeec
Q psy7077 278 PIMGLGTVVPVKQNAEPGWLAGELR-GQTGWFPESYVEPC 316 (336)
Q Consensus 278 Lsf~~Gd~V~V~~~~~~~W~~g~~~-G~~G~fPsnyV~~i 316 (336)
|+|++||+|.|+++.+++||.++.. |+.||||++||+.+
T Consensus 19 l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~ 58 (58)
T smart00326 19 LSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI 58 (58)
T ss_pred CCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence 5699999999999988888888876 99999999999864
No 34
>KOG2856|consensus
Probab=98.64 E-value=9e-09 Score=96.14 Aligned_cols=56 Identities=41% Similarity=0.815 Sum_probs=51.0
Q ss_pred eeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEee-Cceeeecccceeec
Q psy7077 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPC 226 (336)
Q Consensus 170 ~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~-g~~G~fP~~yve~~ 226 (336)
..++|||||.++..|||+|++||.+..++ +.+..||..|+++ |+.|++|+|||+.+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~-eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLE-EEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcC-CccccccccccccCCcccccchhhhhcc
Confidence 67899999999999999999999999874 5678899999986 99999999999864
No 35
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.59 E-value=1e-07 Score=65.52 Aligned_cols=39 Identities=33% Similarity=0.739 Sum_probs=33.4
Q ss_pred CCCCCCCCEEEEEeecCCCeEEEEeCC-ceeEeeCCCeee
Q psy7077 277 SPIMGLGTVVPVKQNAEPGWLAGELRG-QTGWFPESYVEP 315 (336)
Q Consensus 277 ~Lsf~~Gd~V~V~~~~~~~W~~g~~~G-~~G~fPsnyV~~ 315 (336)
+|+|.+||+|.|++..+++||.++..+ ++||||++||++
T Consensus 15 ~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~ 54 (54)
T cd00174 15 ELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVEE 54 (54)
T ss_pred CCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCcC
Confidence 366999999999999878888887755 999999999863
No 36
>KOG0162|consensus
Probab=98.59 E-value=4.6e-08 Score=98.38 Aligned_cols=40 Identities=28% Similarity=0.669 Sum_probs=37.3
Q ss_pred CCCCCCCCEEEEEeecCCCeEEEEeCCceeEeeCCCeeec
Q psy7077 277 SPIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 316 (336)
Q Consensus 277 ~Lsf~~Gd~V~V~~~~~~~W~~g~~~G~~G~fPsnyV~~i 316 (336)
+|+|++||+|.|++++..|||.|+.+|+.||||.|||+++
T Consensus 1067 Els~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1067 ELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred cccccCCCEEEEeccCCCcchhhccCCccccccccccccC
Confidence 3669999999999999999999999999999999999863
No 37
>KOG1264|consensus
Probab=98.45 E-value=7.3e-08 Score=97.95 Aligned_cols=57 Identities=37% Similarity=0.788 Sum_probs=51.1
Q ss_pred eeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCc-eeeecccceeecCC
Q psy7077 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQ-TGWFPESYVEPCDE 228 (336)
Q Consensus 170 ~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~-~G~fP~~yve~~~~ 228 (336)
..++|||+|.++.+|||+|.+|-+|+.. .+..+|||.|..+|+ .+|||+|||+.+.+
T Consensus 775 vt~kAL~~Yka~r~DELSFpk~aiItnv--~keeg~wWrGdYGg~iq~wfPsnyVeei~~ 832 (1267)
T KOG1264|consen 775 VTVKALYDYKAKRSDELSFPKGAIITNV--SKEEGGWWRGDYGGRIQQWFPSNYVEEIST 832 (1267)
T ss_pred hhhhhhhccccCCcccccccccceeEee--eccCCceeecccccceeeeccHHHhhhhcc
Confidence 4588999999999999999999999985 557888999999876 69999999998875
No 38
>KOG0515|consensus
Probab=98.43 E-value=8.2e-08 Score=93.69 Aligned_cols=60 Identities=27% Similarity=0.524 Sum_probs=51.9
Q ss_pred cceeeeeeeecccCCCCCCCCCCCCEEEEeee-ecCCCCeEEEEeeCceeeecccceeecC
Q psy7077 168 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVK-QNAEPGWLAGELRGQTGWFPESYVEPCD 227 (336)
Q Consensus 168 ~~~~~~al~df~a~~~~eLs~~~Gdii~v~~~-~~~~~gW~~g~~~g~~G~fP~~yve~~~ 227 (336)
+...+.|+|||+++..|||+|.+||.++|+++ +..+..||+++++|+.|+||.||+-.+.
T Consensus 682 N~G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyP 742 (752)
T KOG0515|consen 682 NKGVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYP 742 (752)
T ss_pred ccceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCc
Confidence 34567899999999999999999999999865 3355679999999999999999997764
No 39
>KOG2546|consensus
Probab=98.33 E-value=2e-07 Score=88.80 Aligned_cols=56 Identities=41% Similarity=0.808 Sum_probs=51.6
Q ss_pred eeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceeecC
Q psy7077 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227 (336)
Q Consensus 170 ~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~~ 227 (336)
.+++++|||.+...+||+|.+|-+|.|+ .++++|||+|-.+|.+|+||.|||+.+.
T Consensus 424 EkVv~iydy~~~KddeLsf~E~ailyv~--kknddgw~EgV~~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 424 EKVVAIYDYTADKDDELSFAEGAILYVL--KKNDDGWYEGVQDGVTGLFPGNYVEPLK 479 (483)
T ss_pred HHHHhhcccccccccccccccccEEEEE--EecCCcchhheecCcceeccCccccccc
Confidence 5688999999999999999999999996 4589999999999999999999998764
No 40
>KOG1702|consensus
Probab=98.19 E-value=1.2e-06 Score=76.10 Aligned_cols=56 Identities=38% Similarity=0.773 Sum_probs=49.4
Q ss_pred ceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEe--eCceeeecccceeec
Q psy7077 169 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPC 226 (336)
Q Consensus 169 ~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~--~g~~G~fP~~yve~~ 226 (336)
...++|.|||.|++.+|++|.-||.|.- .+..++||.+|.+ .|.+|..|+||++.+
T Consensus 207 gktyra~ydysaqdedevsF~dgd~ivn--vq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 207 GKTYRAFYDYSAQDEDEVSFVDGDYIVN--VQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred CccchhhccCcccCcceeEEecCCeEEE--EEeccCCceeeEEEeccccCCCchhheeeC
Confidence 4679999999999999999999999865 4668899999986 699999999999853
No 41
>KOG3655|consensus
Probab=98.15 E-value=8e-07 Score=86.09 Aligned_cols=57 Identities=35% Similarity=0.732 Sum_probs=50.9
Q ss_pred cceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEe-eCceeeecccceeec
Q psy7077 168 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPC 226 (336)
Q Consensus 168 ~~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~-~g~~G~fP~~yve~~ 226 (336)
....++|+|||++.+..|++|..+|+|.+ ++..+.|||.|.. +|+.|+||+|||+.+
T Consensus 426 ~~q~A~A~~dyqAAddtEisf~p~d~it~--Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 426 EPQTARALYDYQAADDTEISFDPPDAITL--IDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred cCCCccccccccccCCcccccCCcccccc--ccccCCccccccCCCCCcCcccccccccC
Confidence 34678999999999999999999999988 4668899999995 799999999999875
No 42
>KOG2856|consensus
Probab=98.12 E-value=5e-07 Score=84.70 Aligned_cols=40 Identities=28% Similarity=0.586 Sum_probs=35.5
Q ss_pred CCCCCCCCEEEEEeecCC-CeEEEEeC-CceeEeeCCCeeec
Q psy7077 277 SPIMGLGTVVPVKQNAEP-GWLAGELR-GQTGWFPESYVEPC 316 (336)
Q Consensus 277 ~Lsf~~Gd~V~V~~~~~~-~W~~g~~~-G~~G~fPsnyV~~i 316 (336)
+|+|++||.+++++..|+ ||+.|+++ |++|+||+|||+-+
T Consensus 430 ElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 430 ELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred chhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 488999999999877654 99999997 99999999999854
No 43
>KOG1843|consensus
Probab=98.11 E-value=1.3e-06 Score=82.96 Aligned_cols=57 Identities=35% Similarity=0.618 Sum_probs=51.0
Q ss_pred ceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceee
Q psy7077 169 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225 (336)
Q Consensus 169 ~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~ 225 (336)
...+.++|+|..+.+++|+|++||+|.++.+...-..||.|+.+++.|+||+|||+.
T Consensus 416 ~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 416 PNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred cceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 347999999999999999999999999876555567899999999999999999974
No 44
>KOG3655|consensus
Probab=98.03 E-value=2e-06 Score=83.35 Aligned_cols=43 Identities=23% Similarity=0.504 Sum_probs=38.2
Q ss_pred CCCCCCCCCCEEEEEeecCCCeEEEEe-CCceeEeeCCCeeecC
Q psy7077 275 IPSPIMGLGTVVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCD 317 (336)
Q Consensus 275 ~~~Lsf~~Gd~V~V~~~~~~~W~~g~~-~G~~G~fPsnyV~~i~ 317 (336)
..+++|-.+|.|+++...|+|||.|.. +|..|+||+|||+++.
T Consensus 441 dtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li~ 484 (484)
T KOG3655|consen 441 DTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELIE 484 (484)
T ss_pred CcccccCCccccccccccCCccccccCCCCCcCcccccccccCC
Confidence 345779999999999999999999975 7999999999999873
No 45
>KOG1264|consensus
Probab=98.01 E-value=3.6e-06 Score=86.01 Aligned_cols=41 Identities=29% Similarity=0.662 Sum_probs=37.5
Q ss_pred CCCCCCCEEEEEeecCCCeEEEEeCC-ceeEeeCCCeeecCC
Q psy7077 278 PIMGLGTVVPVKQNAEPGWLAGELRG-QTGWFPESYVEPCDE 318 (336)
Q Consensus 278 Lsf~~Gd~V~V~~~~~~~W~~g~~~G-~~G~fPsnyV~~i~~ 318 (336)
|||.+|.+|+++++.++|||.|..|| .+||||+|||+.|.+
T Consensus 791 LSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~ 832 (1267)
T KOG1264|consen 791 LSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEIST 832 (1267)
T ss_pred ccccccceeEeeeccCCceeecccccceeeeccHHHhhhhcc
Confidence 55999999999999999999999986 589999999999875
No 46
>KOG3875|consensus
Probab=98.00 E-value=1.2e-06 Score=80.62 Aligned_cols=59 Identities=32% Similarity=0.470 Sum_probs=47.6
Q ss_pred eeeeeeeecccCCCCCCCCCCCCEEEEeeeec---CCCCeEEEE-e-eCceeeecccceeecCC
Q psy7077 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQN---AEPGWLAGE-L-RGQTGWFPESYVEPCDE 228 (336)
Q Consensus 170 ~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~---~~~gW~~g~-~-~g~~G~fP~~yve~~~~ 228 (336)
..|+|+|||.++++.||+|++||++.|..+++ .+..||..+ . +|..||||.|||+.+..
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 57899999999999999999999999874432 223366665 4 56789999999999875
No 47
>KOG3523|consensus
Probab=97.76 E-value=4.2e-06 Score=83.18 Aligned_cols=57 Identities=35% Similarity=0.759 Sum_probs=50.9
Q ss_pred eeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEe--eCceeeecccceeecCC
Q psy7077 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDE 228 (336)
Q Consensus 170 ~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~--~g~~G~fP~~yve~~~~ 228 (336)
+.+.+...|.+..+|||+++.+|++.|+ .+..+||++|+. +|.+||||..|++.+..
T Consensus 609 pQv~~~~sy~a~q~Del~Le~~Dvv~v~--~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~ 667 (695)
T KOG3523|consen 609 PQVQCVHSYKAKQPDELTLELADVVNVL--QKTPDGWLEGERLRDGERGWFPSSYVEEITN 667 (695)
T ss_pred ChhheeeccccCCCceeeeehhhhhhhh--hcCCCccccccccccCccCcchHHHHHHhcC
Confidence 4677899999999999999999999995 568899999984 79999999999999873
No 48
>KOG2222|consensus
Probab=97.71 E-value=7.3e-06 Score=79.47 Aligned_cols=61 Identities=38% Similarity=0.730 Sum_probs=53.1
Q ss_pred ceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceeecCCCCC
Q psy7077 169 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGE 231 (336)
Q Consensus 169 ~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~~~~~~ 231 (336)
..+++|+.||.....+||.|+++|+|+++ ...+..-|.|+.+|-+||||+.||+.+++.+.
T Consensus 548 ~krakal~df~r~dddelgfrkndiitii--sekdehcwvgelnglrgwfpakfvellder~k 608 (848)
T KOG2222|consen 548 AKRAKALHDFAREDDDELGFRKNDIITII--SEKDEHCWVGELNGLRGWFPAKFVELLDERGK 608 (848)
T ss_pred hHHHHHHhhhhhccccccccccccEEEEe--ecCCcceeeeccccccccchHHHHHHHHhccc
Confidence 35789999999999999999999999996 34556677899999999999999999887543
No 49
>KOG0515|consensus
Probab=97.68 E-value=2e-05 Score=77.36 Aligned_cols=54 Identities=19% Similarity=0.523 Sum_probs=46.6
Q ss_pred EEEEecccCCCCCCCccccCCCEEEEEee----cCCceecccCCCcccccccccceeeeeeee
Q psy7077 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTIGDRTARFRGVSEYRRYRAIYE 177 (336)
Q Consensus 119 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~----~~~Ww~g~~~~~~g~~p~~~~~~~~~al~d 177 (336)
..-|||||+++..|||+|.+||.+.|+.+ +.+||..+++|+.|++|.+ +..||.
T Consensus 685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRn-----ylgLyP 742 (752)
T KOG0515|consen 685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRN-----YLGLYP 742 (752)
T ss_pred eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchh-----hhhcCc
Confidence 45589999999999999999999999987 6789999999999999864 455554
No 50
>KOG4773|consensus
Probab=97.67 E-value=1.1e-06 Score=82.04 Aligned_cols=59 Identities=32% Similarity=0.644 Sum_probs=52.9
Q ss_pred ceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceeecCCC
Q psy7077 169 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229 (336)
Q Consensus 169 ~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~~~~ 229 (336)
...+.+++||.++...||.|.+||++.+. ..++.+||.|..+|.+||+|.+|+..++.-
T Consensus 175 ~q~~~a~~df~gns~~EL~l~agdV~~~~--~r~ek~W~~gk~R~~~g~yp~sF~~~ld~f 233 (386)
T KOG4773|consen 175 AQRAEASFDFPGNSKLELNLVAGDVEFLL--SRDEKYWLLGKVRGLTGYYPDSFVKQLDDF 233 (386)
T ss_pred hHHHHhhccCCCCccceeeeehhhHHHHH--hhcccceeeeeeccccccccHHhhhhhccC
Confidence 45688999999999999999999999985 458899999999999999999999988643
No 51
>KOG3875|consensus
Probab=97.53 E-value=3.9e-05 Score=70.81 Aligned_cols=42 Identities=24% Similarity=0.461 Sum_probs=34.6
Q ss_pred CCCCCCCCEEEEEeec------CCCeEEEEe-CCceeEeeCCCeeecCC
Q psy7077 277 SPIMGLGTVVPVKQNA------EPGWLAGEL-RGQTGWFPESYVEPCDE 318 (336)
Q Consensus 277 ~Lsf~~Gd~V~V~~~~------~~~W~~g~~-~G~~G~fPsnyV~~i~~ 318 (336)
+|||++||++.|.-+. .+||..... +|.+||||.|||+++.-
T Consensus 284 ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 284 ELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 4679999999998543 357777777 78999999999999975
No 52
>KOG3523|consensus
Probab=97.48 E-value=1.4e-05 Score=79.69 Aligned_cols=42 Identities=45% Similarity=0.844 Sum_probs=38.4
Q ss_pred CCCCCCCCEEEEEeecCCCeEEEEe--CCceeEeeCCCeeecCC
Q psy7077 277 SPIMGLGTVVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDE 318 (336)
Q Consensus 277 ~Lsf~~Gd~V~V~~~~~~~W~~g~~--~G~~G~fPsnyV~~i~~ 318 (336)
+|+++.||+|.|+.+..|||++|+. +|.+||||++||+.|..
T Consensus 624 el~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~ 667 (695)
T KOG3523|consen 624 ELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITN 667 (695)
T ss_pred eeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcC
Confidence 4889999999999999999999974 89999999999998864
No 53
>KOG4278|consensus
Probab=97.48 E-value=0.0001 Score=74.42 Aligned_cols=58 Identities=29% Similarity=0.647 Sum_probs=49.3
Q ss_pred ceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEe-eCceeeecccceeecCC
Q psy7077 169 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDE 228 (336)
Q Consensus 169 ~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~-~g~~G~fP~~yve~~~~ 228 (336)
...++|||||.+..+..|++.+||.+.|+.. ..++.|.+++. +|+ ||||+||+.++..
T Consensus 90 pNLFVALYDFvasGdntLSitKGeklRvLGY-N~NgEWcEartKNGq-GWVPSNyItPvNS 148 (1157)
T KOG4278|consen 90 PNLFVALYDFVASGDNTLSITKGEKLRVLGY-NKNGEWCEARTKNGQ-GWVPSNYITPVNS 148 (1157)
T ss_pred CceeEeeeeeeccccceeeeecCceEEEeee-cCCCcceeecccCCC-ccccccccccccc
Confidence 3578999999999999999999999999853 45667988885 565 9999999998763
No 54
>KOG1843|consensus
Probab=97.45 E-value=7.6e-05 Score=71.24 Aligned_cols=48 Identities=35% Similarity=0.729 Sum_probs=45.5
Q ss_pred EEEEecccCCCCCCCccccCCCEEEEEee---cCCceecccCCCccccccc
Q psy7077 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTARFRGV 166 (336)
Q Consensus 119 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~---~~~Ww~g~~~~~~g~~p~~ 166 (336)
.++|+|+|..+.++||+|++||+|.++++ -++||.|..+++.|+||.+
T Consensus 418 ~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPan 468 (473)
T KOG1843|consen 418 IATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPAN 468 (473)
T ss_pred eeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccc
Confidence 89999999999999999999999999998 5789999999999999976
No 55
>KOG2528|consensus
Probab=97.40 E-value=0.00012 Score=70.74 Aligned_cols=58 Identities=38% Similarity=0.730 Sum_probs=51.8
Q ss_pred eeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEe-eCceeeecccceeecCC
Q psy7077 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDE 228 (336)
Q Consensus 170 ~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~-~g~~G~fP~~yve~~~~ 228 (336)
.+++++|||.+.+..|++...||++.+. .+....|||.|.+ .|.+|+||+.||+.+..
T Consensus 3 sk~RamyDf~~E~~sElsi~~~evl~i~-~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~ 61 (490)
T KOG2528|consen 3 SKARAMYDFQSEGHSELSIWEGEVLSIT-SEDVIEGWLEGSNSRGERGLFPASYVEVTRL 61 (490)
T ss_pred cchhhhcchhhcccccccccccceeeec-CcccccccccCCCccCccCCCcccceeeecc
Confidence 3578999999999999999999999987 4667889999985 79999999999999873
No 56
>KOG3725|consensus
Probab=97.39 E-value=4e-05 Score=68.97 Aligned_cols=59 Identities=29% Similarity=0.500 Sum_probs=53.8
Q ss_pred cceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceeec
Q psy7077 168 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226 (336)
Q Consensus 168 ~~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~ 226 (336)
...+++++|||++..+.||++-..++|.|....-.+..|..|+.+++.|-+|.+|++.+
T Consensus 316 gtrkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 316 GTRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred cccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence 46789999999999999999999999999876667888999999999999999999865
No 57
>KOG4773|consensus
Probab=97.34 E-value=5.9e-05 Score=70.63 Aligned_cols=45 Identities=33% Similarity=0.585 Sum_probs=41.2
Q ss_pred CCCCCCCCEEEEEeecCCCeEEEEeCCceeEeeCCCeeecCCCCC
Q psy7077 277 SPIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGE 321 (336)
Q Consensus 277 ~Lsf~~Gd~V~V~~~~~~~W~~g~~~G~~G~fPsnyV~~i~~~~~ 321 (336)
+|.|.+||++.+..+++.+||.|...|.+||||.+|++.+++-..
T Consensus 191 EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fpe 235 (386)
T KOG4773|consen 191 ELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFPE 235 (386)
T ss_pred eeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCcc
Confidence 477999999999999999999999999999999999999976554
No 58
>KOG1702|consensus
Probab=97.17 E-value=0.00035 Score=61.00 Aligned_cols=39 Identities=28% Similarity=0.489 Sum_probs=34.4
Q ss_pred CCCCCCCEEEEEeecCCCeEEEE--eCCceeEeeCCCeeec
Q psy7077 278 PIMGLGTVVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPC 316 (336)
Q Consensus 278 Lsf~~Gd~V~V~~~~~~~W~~g~--~~G~~G~fPsnyV~~i 316 (336)
.+|.-||.|.-....||||-.|. .+|.+|..|+|||+-+
T Consensus 224 vsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 224 VSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred eEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence 45999999999999999999885 4899999999999853
No 59
>KOG2222|consensus
Probab=97.11 E-value=0.00011 Score=71.39 Aligned_cols=47 Identities=28% Similarity=0.565 Sum_probs=41.9
Q ss_pred CCCCCCCCCEEEEEeecCCCeEEEEeCCceeEeeCCCeeecCCCCCC
Q psy7077 276 PSPIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV 322 (336)
Q Consensus 276 ~~Lsf~~Gd~V~V~~~~~~~W~~g~~~G~~G~fPsnyV~~i~~~~~~ 322 (336)
.+|.|++.|+|+|+..-|+.-|.|++||-+||||+-||+.+++-++.
T Consensus 563 delgfrkndiitiisekdehcwvgelnglrgwfpakfvellder~k~ 609 (848)
T KOG2222|consen 563 DELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLDERGKL 609 (848)
T ss_pred cccccccccEEEEeecCCcceeeeccccccccchHHHHHHHHhccce
Confidence 34779999999999999998899999999999999999999876553
No 60
>KOG1451|consensus
Probab=97.01 E-value=0.00092 Score=66.71 Aligned_cols=40 Identities=43% Similarity=0.794 Sum_probs=35.7
Q ss_pred CCCCCCCCEE-EEEeecCCCeEEEEeCCceeEeeCCCeeec
Q psy7077 277 SPIMGLGTVV-PVKQNAEPGWLAGELRGQTGWFPESYVEPC 316 (336)
Q Consensus 277 ~Lsf~~Gd~V-~V~~~~~~~W~~g~~~G~~G~fPsnyV~~i 316 (336)
+|+|..|.++ .|.+..++||..|+++|++|++|+|||+.+
T Consensus 772 elsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l 812 (812)
T KOG1451|consen 772 ELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL 812 (812)
T ss_pred cccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence 4889999999 566688999999999999999999999863
No 61
>KOG1451|consensus
Probab=96.90 E-value=0.00085 Score=66.94 Aligned_cols=57 Identities=42% Similarity=0.816 Sum_probs=49.3
Q ss_pred ceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceeec
Q psy7077 169 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226 (336)
Q Consensus 169 ~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~ 226 (336)
..++.++|.-.+....+++|..|.++.-. .....+||..|+++|++|++|+|||+++
T Consensus 756 ~rk~k~lyAc~a~h~selsf~~gt~f~nv-~~S~e~Gwl~GtLnGktglip~nyve~l 812 (812)
T KOG1451|consen 756 SRRVKTLYACTADHHSELSFEPGTIFTNV-YESNEDGWLVGTLNGKTGLIPSNYVEPL 812 (812)
T ss_pred cccccceeccCCCCcccccccCcceeeee-cccCCCCceeeecCCCcccCcccccCcC
Confidence 35678899999999999999999998653 3457889999999999999999999864
No 62
>KOG4429|consensus
Probab=96.85 E-value=0.00045 Score=63.41 Aligned_cols=55 Identities=29% Similarity=0.361 Sum_probs=49.6
Q ss_pred eeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceeec
Q psy7077 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226 (336)
Q Consensus 170 ~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~ 226 (336)
..|.++|.|+++..+||....||++.+. +....|||.|++.|..|-||+.|++..
T Consensus 364 ~lcdafYSfqarqddel~~e~gditif~--Ekkeeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 364 ILCDAFYSFQARQDDELGGEIGDITIFD--EKKEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred HHhhhhhccccccccccCCcccceeeec--CcccCCCceeeeccccCCCcHHHHHHh
Confidence 4588999999999999999999999884 557889999999999999999999764
No 63
>KOG3557|consensus
Probab=96.77 E-value=0.00039 Score=69.96 Aligned_cols=57 Identities=25% Similarity=0.560 Sum_probs=50.2
Q ss_pred eeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEe-eCceeeecccceeecCCC
Q psy7077 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDET 229 (336)
Q Consensus 170 ~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~-~g~~G~fP~~yve~~~~~ 229 (336)
..+.++|||.+++..||++.+||++.|+ .+..+||.++. .|+.|++|+|.+..+.+.
T Consensus 501 k~~~~~Ydf~arNs~ELsV~k~E~LEvl---~d~R~WW~~kn~~G~~GyvP~nIL~~~~~~ 558 (721)
T KOG3557|consen 501 KWVLVLYDFQARNSSELSVKKGEVLEVL---DDGRKWWKVKNGHGRAGYVPSNILAPLQPE 558 (721)
T ss_pred eeeeeehhhhcccchhhhhhhhhhhhhh---hccccceeccCccCCCCCcchhhhccCCCc
Confidence 4688999999999999999999999995 36778999987 599999999999988753
No 64
>KOG3775|consensus
Probab=96.56 E-value=0.0015 Score=62.03 Aligned_cols=60 Identities=35% Similarity=0.664 Sum_probs=51.2
Q ss_pred eeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEe--eCceeeecccceeecCCCCC
Q psy7077 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDETGE 231 (336)
Q Consensus 170 ~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~--~g~~G~fP~~yve~~~~~~~ 231 (336)
..-++++.|.++.++||-+..||-|.| ..+.++-|++|.+ .|++|+||+.|+-.++....
T Consensus 263 ~THR~~~rFvPRHpDELeLEIgDav~V--e~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~ee 324 (482)
T KOG3775|consen 263 QTHRAVFRFVPRHPDELELEIGDAVLV--EAEADDFWFEGFNLRTGERGIFPAFYAHEVDGPEE 324 (482)
T ss_pred hhhhhhhhccCCCcceeeeecCCeeEe--eecccchhhccccccccccccccceeEEecCCchh
Confidence 346799999999999999999999999 3457778999975 69999999999998875443
No 65
>KOG4575|consensus
Probab=96.54 E-value=0.0024 Score=64.30 Aligned_cols=56 Identities=27% Similarity=0.411 Sum_probs=45.3
Q ss_pred eeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEE-e--eCceeeecccceeecCC
Q psy7077 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-L--RGQTGWFPESYVEPCDE 228 (336)
Q Consensus 170 ~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~-~--~g~~G~fP~~yve~~~~ 228 (336)
..++|+|.+.++..++|.|.+||++.+++ ..+|||++. . ....|+||+|||..++.
T Consensus 9 ~~vrA~y~w~ge~eGdl~f~egDlie~tr---I~dgkwwi~lhrNk~~~g~fpsNFvhcLd~ 67 (874)
T KOG4575|consen 9 CMVRALYAWPGEREGDLKFTEGDLIEQTR---IEDGKWWILLHRNKDEDGLFPSNFVHCLDK 67 (874)
T ss_pred ceEEeeccCCCCcccccceecccceeEEe---eccceeeeeeeecccccccCcccceeeccc
Confidence 46889999999999999999999999964 456666664 3 35679999999976653
No 66
>KOG4278|consensus
Probab=96.50 E-value=0.0025 Score=64.65 Aligned_cols=48 Identities=13% Similarity=0.306 Sum_probs=44.3
Q ss_pred EEEEecccCCCCCCCccccCCCEEEEEee--cCCceecccCCCccccccc
Q psy7077 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTARFRGV 166 (336)
Q Consensus 119 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~Ww~g~~~~~~g~~p~~ 166 (336)
+++|||||.+..++.|++.+||.+.|+.- +.+|.+.+..+..||+|++
T Consensus 92 LFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGqGWVPSN 141 (1157)
T KOG4278|consen 92 LFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQGWVPSN 141 (1157)
T ss_pred eeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCCcccccc
Confidence 99999999999999999999999999886 8999999887667999986
No 67
>KOG4575|consensus
Probab=96.30 E-value=0.0042 Score=62.54 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=34.2
Q ss_pred CCCCCCCEEEEEeecCCCeEEEEe--CCceeEeeCCCeeecC
Q psy7077 278 PIMGLGTVVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCD 317 (336)
Q Consensus 278 Lsf~~Gd~V~V~~~~~~~W~~g~~--~G~~G~fPsnyV~~i~ 317 (336)
|.|-+||+|++++-.|+|||.+.. ....|+||+|||-.++
T Consensus 25 l~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcLd 66 (874)
T KOG4575|consen 25 LKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCLD 66 (874)
T ss_pred cceecccceeEEeeccceeeeeeeecccccccCcccceeecc
Confidence 449999999999999999998865 4678999999996655
No 68
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=96.19 E-value=0.0082 Score=41.44 Aligned_cols=35 Identities=31% Similarity=0.658 Sum_probs=30.5
Q ss_pred CCCCCEEEEEeecCCC-eEEE-EeCCceeEeeCCCee
Q psy7077 280 MGLGTVVPVKQNAEPG-WLAG-ELRGQTGWFPESYVE 314 (336)
Q Consensus 280 f~~Gd~V~V~~~~~~~-W~~g-~~~G~~G~fPsnyV~ 314 (336)
+..|+.|.|+.+.+++ |+.. ..+|+.||++++||+
T Consensus 19 l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 19 LPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 7889999999988776 8888 779999999999985
No 69
>KOG3725|consensus
Probab=96.10 E-value=0.011 Score=53.69 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=43.3
Q ss_pred EEEEecccCCCCCCCccccCCCEEEEEee---cCCceecccCCCcccccc
Q psy7077 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTARFRG 165 (336)
Q Consensus 119 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~---~~~Ww~g~~~~~~g~~p~ 165 (336)
.++++|||++..+.||++-++|+|.|.+- |.+|..|+.+++.|-+|-
T Consensus 319 kArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPv 368 (375)
T KOG3725|consen 319 KARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPV 368 (375)
T ss_pred ceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcch
Confidence 58899999999999999999999999886 999999999999988874
No 70
>KOG0197|consensus
Probab=96.07 E-value=0.0024 Score=63.24 Aligned_cols=57 Identities=28% Similarity=0.624 Sum_probs=48.2
Q ss_pred ceeeeeeeecccCCCCCCCCCCCCE-EEEeeeecCCCCeEEEEe--eCceeeecccceeecC
Q psy7077 169 YRRYRAIYEFVSRNGDELSFQPGDI-IMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCD 227 (336)
Q Consensus 169 ~~~~~al~df~a~~~~eLs~~~Gdi-i~v~~~~~~~~gW~~g~~--~g~~G~fP~~yve~~~ 227 (336)
...++|+|+|.+..+.+|+|.+||. ..+ .+..+..||+++. .+..|++|+|||....
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~--~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~ 70 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLIL--LETTNGDWWRARSLQLGQEGYIPSNYVARNR 70 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEe--eccCChhHHHHHHhhcCCCCcCcCceeeccc
Confidence 4578999999999999999999999 555 3556788999874 5889999999998753
No 71
>KOG3775|consensus
Probab=95.95 E-value=0.0045 Score=58.79 Aligned_cols=52 Identities=27% Similarity=0.450 Sum_probs=43.4
Q ss_pred CCCCCCCCCCCCCCCEEEEEeecCCCeEEEE--eCCceeEeeCCCeeecCCCCC
Q psy7077 270 GIPADIPSPIMGLGTVVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCDETGE 321 (336)
Q Consensus 270 ~~~~~~~~Lsf~~Gd~V~V~~~~~~~W~~g~--~~G~~G~fPsnyV~~i~~~~~ 321 (336)
.++....+|.|+.||-|.|-+..+|-|++|. ..|+.|+||+.|+-.++-..+
T Consensus 271 FvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~ee 324 (482)
T KOG3775|consen 271 FVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGPEE 324 (482)
T ss_pred ccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCchh
Confidence 4455556799999999999999999999995 379999999999998875433
No 72
>KOG3771|consensus
Probab=95.92 E-value=0.0034 Score=61.40 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=45.7
Q ss_pred ceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceee
Q psy7077 169 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225 (336)
Q Consensus 169 ~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~ 225 (336)
...+.++|+|.++..++|+|+.||+|.|+. .++.+.||.|.+.|..+-+|.+|+..
T Consensus 400 ~~~v~a~~dy~a~~~deLsf~~gd~i~vi~-s~~~~e~~eg~~mg~ke~~~~~~~~~ 455 (460)
T KOG3771|consen 400 LYKVKALHDYAAQDTDELSFEAGDVILVIP-SDNPEEQDEGWLMGVKESDWNGLFPL 455 (460)
T ss_pred ccceeccccccccccccccccCCCEEEEec-CCCccchhhHHHhhhcccccccceec
Confidence 356889999999999999999999999975 45667799998887776666666643
No 73
>KOG3771|consensus
Probab=95.70 E-value=0.0059 Score=59.79 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=39.3
Q ss_pred EEEEecccCCCCCCCccccCCCEEEEEee--cCCceecccCCCccccc
Q psy7077 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTARFR 164 (336)
Q Consensus 119 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~Ww~g~~~~~~g~~p 164 (336)
...++|||.+++.+||+|..||+|.|+.. .++||.|...|..+-++
T Consensus 402 ~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~ 449 (460)
T KOG3771|consen 402 KVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDW 449 (460)
T ss_pred ceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccccc
Confidence 67889999999999999999999999987 78898888766555444
No 74
>KOG4429|consensus
Probab=95.37 E-value=0.011 Score=54.38 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=35.7
Q ss_pred CCCCCCCEEEEEeecCCCeEEEEeCCceeEeeCCCeeec
Q psy7077 278 PIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 316 (336)
Q Consensus 278 Lsf~~Gd~V~V~~~~~~~W~~g~~~G~~G~fPsnyV~~i 316 (336)
|....||++.+-++-.+|||.|+++|..|-||+.||+..
T Consensus 380 l~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 380 LGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred cCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence 448999999999999999999999999999999999854
No 75
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=95.28 E-value=0.032 Score=39.44 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=30.5
Q ss_pred CCCCCEEEEEeecCCCeEEEEeC-CceeEeeCCCee
Q psy7077 280 MGLGTVVPVKQNAEPGWLAGELR-GQTGWFPESYVE 314 (336)
Q Consensus 280 f~~Gd~V~V~~~~~~~W~~g~~~-G~~G~fPsnyV~ 314 (336)
+..|+.|.|+...+++|+..+.. |+.||+|..++.
T Consensus 27 l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~~ 62 (63)
T smart00287 27 LKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVVN 62 (63)
T ss_pred ecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeeec
Confidence 78899999999887689988875 999999988874
No 76
>KOG2528|consensus
Probab=95.17 E-value=0.013 Score=56.90 Aligned_cols=41 Identities=37% Similarity=0.680 Sum_probs=34.7
Q ss_pred CCCCCCCCEEEEEe-ecCCCeEEEE-eCCceeEeeCCCeeecC
Q psy7077 277 SPIMGLGTVVPVKQ-NAEPGWLAGE-LRGQTGWFPESYVEPCD 317 (336)
Q Consensus 277 ~Lsf~~Gd~V~V~~-~~~~~W~~g~-~~G~~G~fPsnyV~~i~ 317 (336)
+++...||++.+.. ...+||+.|. ..|.+|+||++||+++.
T Consensus 18 Elsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 18 ELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTR 60 (490)
T ss_pred cccccccceeeecCcccccccccCCCccCccCCCcccceeeec
Confidence 35589999999984 4678999985 58999999999999986
No 77
>KOG3557|consensus
Probab=94.99 E-value=0.0089 Score=60.49 Aligned_cols=48 Identities=19% Similarity=0.500 Sum_probs=44.9
Q ss_pred EEEEecccCCCCCCCccccCCCEEEEEeecCCceecccC-CCccccccc
Q psy7077 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIG-DRTARFRGV 166 (336)
Q Consensus 119 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~Ww~g~~~-~~~g~~p~~ 166 (336)
+..++|||.+....||+..+||+..|+...-.||..++. |+.|++|.+
T Consensus 502 ~~~~~Ydf~arNs~ELsV~k~E~LEvl~d~R~WW~~kn~~G~~GyvP~n 550 (721)
T KOG3557|consen 502 WVLVLYDFQARNSSELSVKKGEVLEVLDDGRKWWKVKNGHGRAGYVPSN 550 (721)
T ss_pred eeeeehhhhcccchhhhhhhhhhhhhhhccccceeccCccCCCCCcchh
Confidence 788999999999999999999999999999999999886 889999875
No 78
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=94.61 E-value=0.055 Score=48.12 Aligned_cols=103 Identities=21% Similarity=0.341 Sum_probs=68.4
Q ss_pred CCCCCCEEEEeeeecCCCCeEEEEe-eCceeeecccceeecCCCCCCCCCCCCCCCCccccccccCCCCcCCCCCCCccc
Q psy7077 187 SFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDETGEVVPGTELPGDKHHLELIAEVPENISDSGGSGIAV 265 (336)
Q Consensus 187 s~~~Gdii~v~~~~~~~~gW~~g~~-~g~~G~fP~~yve~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~ 265 (336)
++++|+.+.|+. .+...||...+. +|+.||||..++..-+......+..... +...+. .++
T Consensus 49 ~i~~Ge~vtvl~-~~~~~~~~qI~~~~g~t~wi~~~~lt~e~s~~~~~p~~~~n--------Vr~~t~------t~~--- 110 (205)
T COG3103 49 SIKAGEKVTVLG-TDGNTGYYQIRDSSGRTGWILSKNLTSEPSSNERVPDLELN--------VRELTK------TLS--- 110 (205)
T ss_pred EecCCcEEEEEE-EcCcccEEEEEecCCceEEEechhhccccccceecCchhhh--------hhhccc------chh---
Confidence 578999999973 345557999986 6899999999987644221111111100 000000 000
Q ss_pred cCCCCCCCCCCCCCCCCCCEEEEEeecCCCeEEEEeCCceeEeeCCCeeec
Q psy7077 266 EEGPGIPADIPSPIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 316 (336)
Q Consensus 266 ~~~~~~~~~~~~Lsf~~Gd~V~V~~~~~~~W~~g~~~G~~G~fPsnyV~~i 316 (336)
.... .++.|..+++..+...+|.....+|+.|++=.-|+..-
T Consensus 111 -------~v~g--~~~~~t~~~~~sk~~~~w~~~~~~~k~~~vs~q~~~~~ 152 (205)
T COG3103 111 -------NVDG--TWKQGTAVMQISKTQNNWYIITLKGKNGYVSGQLVTAQ 152 (205)
T ss_pred -------hhhh--hhhcCcEEEEEeeccccchhhhhhcccchhhhhheecc
Confidence 0001 18899999999999999999999999999999887644
No 79
>KOG0609|consensus
Probab=94.58 E-value=0.022 Score=56.82 Aligned_cols=48 Identities=17% Similarity=0.465 Sum_probs=39.8
Q ss_pred EEEEecccCCCCCCC-------ccccCCCEEEEEee-cCCceecccC-----CCccccccc
Q psy7077 119 YYIAAYPYDSTEPGD-------LTFNQDEVIYVTKK-ENDWWTGTIG-----DRTARFRGV 166 (336)
Q Consensus 119 ~~~al~dy~~~~~~e-------Ls~~~Gd~i~v~~~-~~~Ww~g~~~-----~~~g~~p~~ 166 (336)
+.+|+|||.+.+++- |+|++||++.|+++ |.+||.+... +..|..|+.
T Consensus 216 ~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~ 276 (542)
T KOG0609|consen 216 FVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSK 276 (542)
T ss_pred eehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCH
Confidence 788999999998874 48999999999999 9999998654 345777764
No 80
>KOG0609|consensus
Probab=94.55 E-value=0.013 Score=58.39 Aligned_cols=54 Identities=24% Similarity=0.558 Sum_probs=43.4
Q ss_pred eeeeeeeecccCCC-------CCCCCCCCCEEEEeeeecCCCCeEEEEee-----Cceeeecccceee
Q psy7077 170 RRYRAIYEFVSRNG-------DELSFQPGDIIMVPVKQNAEPGWLAGELR-----GQTGWFPESYVEP 225 (336)
Q Consensus 170 ~~~~al~df~a~~~-------~eLs~~~Gdii~v~~~~~~~~gW~~g~~~-----g~~G~fP~~yve~ 225 (336)
..++|+|||++... -.|+|++||++.| ..++|..||.++.- +..|++|+..++.
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqI--v~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe 280 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQI--VSQDDPNWWQARRVGDPFGGLAGLIPSKELQE 280 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeee--ccCCCcchhhhhcccCccccccccccCHHHHH
Confidence 56889999998644 4689999999999 46789999998753 4579999977654
No 81
>KOG0197|consensus
Probab=94.54 E-value=0.025 Score=56.20 Aligned_cols=49 Identities=24% Similarity=0.557 Sum_probs=41.7
Q ss_pred cEEEEecccCCCCCCCccccCCCE-EEEEee-cCCceecccC--CCccccccc
Q psy7077 118 KYYIAAYPYDSTEPGDLTFNQDEV-IYVTKK-ENDWWTGTIG--DRTARFRGV 166 (336)
Q Consensus 118 ~~~~al~dy~~~~~~eLs~~~Gd~-i~v~~~-~~~Ww~g~~~--~~~g~~p~~ 166 (336)
..++|+|+|.+..++||+|.+||+ ..+.+. +.+||+.+.. +..|.+|++
T Consensus 12 ~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N 64 (468)
T KOG0197|consen 12 TIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSN 64 (468)
T ss_pred ceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCc
Confidence 379999999999999999999999 566666 7999998764 777888876
No 82
>KOG3565|consensus
Probab=93.64 E-value=0.019 Score=59.49 Aligned_cols=58 Identities=29% Similarity=0.694 Sum_probs=51.0
Q ss_pred ceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEE--eeCceeeecccceeecC
Q psy7077 169 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCD 227 (336)
Q Consensus 169 ~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~--~~g~~G~fP~~yve~~~ 227 (336)
...+.|+|.|.+++++++++.+|+++.+++ .+..+||-+++ .+|..|.||.+|++...
T Consensus 578 ~~~~~a~~~~~~~s~~~~si~~~~il~~ie-~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~ 637 (640)
T KOG3565|consen 578 IRTSKALYAFEGQSEGTISIDPGEILQVIE-EDKGDGWTRGRLEPNGEKGYVPTSYLDVTE 637 (640)
T ss_pred ccceecccCcCCCCCCccccCcchhHHHHh-hcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence 356889999999999999999999999975 46778999998 68999999999998754
No 83
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.42 E-value=0.081 Score=47.23 Aligned_cols=38 Identities=18% Similarity=0.353 Sum_probs=32.5
Q ss_pred CCCCCEEEEEeecC-CCeEEEE-eCCceeEeeCCCeeecC
Q psy7077 280 MGLGTVVPVKQNAE-PGWLAGE-LRGQTGWFPESYVEPCD 317 (336)
Q Consensus 280 f~~Gd~V~V~~~~~-~~W~~g~-~~G~~G~fPsnyV~~i~ 317 (336)
+..|+.|+|++..+ ++|...+ .+|++||+++.|+....
T Consensus 50 l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~p 89 (206)
T PRK10884 50 LNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTTP 89 (206)
T ss_pred EcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCCc
Confidence 78999999998876 6898886 58999999999997543
No 84
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=92.84 E-value=0.17 Score=34.72 Aligned_cols=37 Identities=24% Similarity=0.606 Sum_probs=27.1
Q ss_pred CCCCCCEEEEeeeecCCCCeEEE-EeeCceeeeccccee
Q psy7077 187 SFQPGDIIMVPVKQNAEPGWLAG-ELRGQTGWFPESYVE 224 (336)
Q Consensus 187 s~~~Gdii~v~~~~~~~~gW~~g-~~~g~~G~fP~~yve 224 (336)
.+..|+.|.++.. ..+.+|++. ..+|..||++..||+
T Consensus 18 ~l~~g~~v~v~~~-~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGE-SGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEE-ETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEE-cCCcEEEEEECcCCcEEEEEccccC
Confidence 3578899999643 233339999 468899999999985
No 85
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=92.41 E-value=0.27 Score=33.93 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=28.2
Q ss_pred CCCCCEEEEEeecCCCeEEEEeCCceeEeeCCCe
Q psy7077 280 MGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYV 313 (336)
Q Consensus 280 f~~Gd~V~V~~~~~~~W~~g~~~G~~G~fPsnyV 313 (336)
++.|..+.|.+. .++|...+.+|.+||++.+.|
T Consensus 21 l~~g~~v~v~~~-~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 21 LEPGVPVRVIEC-RGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred ECCCCEEEEEEc-cCCeEEEEECCeEEeEEeeec
Confidence 788999999955 567888889999999998765
No 86
>KOG0199|consensus
Probab=92.30 E-value=0.13 Score=53.32 Aligned_cols=47 Identities=28% Similarity=0.435 Sum_probs=38.2
Q ss_pred EEEecccCCCCCCCccccCCCEEEEEee--cCCceecccC--CCccccccc
Q psy7077 120 YIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIG--DRTARFRGV 166 (336)
Q Consensus 120 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~Ww~g~~~--~~~g~~p~~ 166 (336)
.+|..+|+..+++-|-|++||.|.|++. .+.||+|.+. ++.|.||..
T Consensus 377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprs 427 (1039)
T KOG0199|consen 377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRS 427 (1039)
T ss_pred ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcc
Confidence 3444566778899999999999999998 5689999764 678999864
No 87
>KOG3565|consensus
Probab=91.91 E-value=0.067 Score=55.50 Aligned_cols=41 Identities=24% Similarity=0.620 Sum_probs=36.0
Q ss_pred CCCCCCCCEEEEEeec-CCCeEEEE--eCCceeEeeCCCeeecC
Q psy7077 277 SPIMGLGTVVPVKQNA-EPGWLAGE--LRGQTGWFPESYVEPCD 317 (336)
Q Consensus 277 ~Lsf~~Gd~V~V~~~~-~~~W~~g~--~~G~~G~fPsnyV~~i~ 317 (336)
+++..+|+++.|++.+ ++||.+++ .+|..|.||.+||+.+.
T Consensus 594 ~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~ 637 (640)
T KOG3565|consen 594 TISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE 637 (640)
T ss_pred ccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence 4779999999998765 78999998 79999999999998664
No 88
>KOG0199|consensus
Probab=91.71 E-value=0.21 Score=51.86 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=31.5
Q ss_pred CCCCCCCEEEEEeecC-CCeEEE--EeCCceeEeeCCCeee
Q psy7077 278 PIMGLGTVVPVKQNAE-PGWLAG--ELRGQTGWFPESYVEP 315 (336)
Q Consensus 278 Lsf~~Gd~V~V~~~~~-~~W~~g--~~~G~~G~fPsnyV~~ 315 (336)
|.|++||.|+|++... +.||.| ..++++|.||.+-|..
T Consensus 391 Lh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt~ 431 (1039)
T KOG0199|consen 391 LHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVTA 431 (1039)
T ss_pred eeeccCCeEEEEecCCccceeeccccccceecccCcceeee
Confidence 7799999999998875 456666 3589999999999983
No 89
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=91.16 E-value=0.3 Score=43.48 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=35.1
Q ss_pred CCCCCEEEEEeecCC-CeEEEEe-CCceeEeeCCCeeecCCCCC
Q psy7077 280 MGLGTVVPVKQNAEP-GWLAGEL-RGQTGWFPESYVEPCDETGE 321 (336)
Q Consensus 280 f~~Gd~V~V~~~~~~-~W~~g~~-~G~~G~fPsnyV~~i~~~~~ 321 (336)
+++||.|+|+...+. +|...+. +|+.||||+.++..-+..++
T Consensus 50 i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~s~~~ 93 (205)
T COG3103 50 IKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEPSSNE 93 (205)
T ss_pred ecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhccccccce
Confidence 899999999999887 7888765 79999999999986655433
No 90
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=90.27 E-value=0.29 Score=37.26 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=25.8
Q ss_pred CCCCCCCEEEEEeecCC-CeEEEEeCCceeEeeCCCeeecC
Q psy7077 278 PIMGLGTVVPVKQNAEP-GWLAGELRGQTGWFPESYVEPCD 317 (336)
Q Consensus 278 Lsf~~Gd~V~V~~~~~~-~W~~g~~~G~~G~fPsnyV~~i~ 317 (336)
|.+.+|+++.|++..++ -|.+....|+-|++|.+++-..+
T Consensus 33 Lpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~d 73 (89)
T PF14603_consen 33 LPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPLD 73 (89)
T ss_dssp ----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS----
T ss_pred CCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCCC
Confidence 66999999999988655 66667779999999999985543
No 91
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=90.11 E-value=0.4 Score=36.49 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=27.9
Q ss_pred CCCCCCCCCCCEEEEeeeecCCCCeEEEEe-eCceeeecccceeecC
Q psy7077 182 NGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCD 227 (336)
Q Consensus 182 ~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~-~g~~G~fP~~yve~~~ 227 (336)
..-+|.+.+|+++.|+ +..+.+-|.+++ .|+.|+||.+++-..+
T Consensus 29 G~kDLpi~~GE~LeVI--~~t~~~kvlCRN~~GKYGYV~~~~L~~~d 73 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVI--QFTDDNKVLCRNSEGKYGYVLRSHLLPLD 73 (89)
T ss_dssp -TTB----TT-B-EEE--EESSSSEEEEEETTTEEEEEEGGGS----
T ss_pred CcccCCcCCCCEEEEE--EeCCCCeEEEeCCCCceeEEEHHHccCCC
Confidence 4679999999999995 456777888886 6999999999986544
No 92
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=89.71 E-value=0.52 Score=33.06 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=27.4
Q ss_pred CCCCCCEEEEeeeecCCCCeEEEEee-Cceeeeccccee
Q psy7077 187 SFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVE 224 (336)
Q Consensus 187 s~~~Gdii~v~~~~~~~~gW~~g~~~-g~~G~fP~~yve 224 (336)
.+..|+.+.++. ...++|+..+.. |..||+|..++.
T Consensus 26 ~l~~g~~v~i~~--~~~~~W~~v~~~~g~~Gwi~~~~~~ 62 (63)
T smart00287 26 TLKKGDKVKVLG--VDGQDWAKITYGSGQRGYVPGYVVN 62 (63)
T ss_pred EecCCCEEEEEE--ccCCceEEEEcCCCCEEEEEeeeec
Confidence 467899999853 233489999975 999999877653
No 93
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.42 E-value=0.52 Score=42.11 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=31.4
Q ss_pred CCCCCCEEEEeeeecCCCCeEEEEe-eCceeeecccceeecC
Q psy7077 187 SFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCD 227 (336)
Q Consensus 187 s~~~Gdii~v~~~~~~~~gW~~g~~-~g~~G~fP~~yve~~~ 227 (336)
++..|+.|.|+. ...+.+|.+.+. +|+.||++..|+....
T Consensus 49 ~l~~G~~v~vl~-~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~p 89 (206)
T PRK10884 49 TLNAGEEVTLLQ-VNANTNYAQIRDSKGRTAWIPLKQLSTTP 89 (206)
T ss_pred EEcCCCEEEEEE-EcCCCCEEEEEeCCCCEEeEEHHHhcCCc
Confidence 467899999964 234468999985 7999999999997644
No 94
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=88.25 E-value=0.76 Score=46.00 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=35.7
Q ss_pred CCCCCEEEEEeecCCCeEEEEeC-CceeEeeCCCeeecCCCCCCC
Q psy7077 280 MGLGTVVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCDETGEVV 323 (336)
Q Consensus 280 f~~Gd~V~V~~~~~~~W~~g~~~-G~~G~fPsnyV~~i~~~~~~~ 323 (336)
+..|+.|.|+...+.+|+..+.+ |+.||+=+.||..-....++.
T Consensus 105 l~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~~~~~~~~~ 149 (481)
T PRK13914 105 IKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTDKVTSTPVA 149 (481)
T ss_pred ecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccCCCccCccc
Confidence 88999999987667789999884 999999999998654444444
No 95
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=87.60 E-value=0.86 Score=31.34 Aligned_cols=35 Identities=29% Similarity=0.605 Sum_probs=28.3
Q ss_pred CCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccce
Q psy7077 186 LSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223 (336)
Q Consensus 186 Ls~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yv 223 (336)
..+.+|..+.+. ....+|.+.+.+|..||++.+.|
T Consensus 19 ~~l~~g~~v~v~---~~~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVI---ECRGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEE---EccCCeEEEEECCeEEeEEeeec
Confidence 356788888884 35778999999999999998765
No 96
>KOG3705|consensus
Probab=86.76 E-value=0.78 Score=44.49 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=43.4
Q ss_pred ceeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEe--eCceeeecccceee
Q psy7077 169 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEP 225 (336)
Q Consensus 169 ~~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~--~g~~G~fP~~yve~ 225 (336)
....+++++..++..+|+.++.||+|.|- ....+|.-.|.+ .++.|+||+--|++
T Consensus 509 AHn~ivi~aH~prt~~ei~l~vGD~vgvA--GNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 509 AHNVIVIEAHIPRTNKEIDLKVGDKVGVA--GNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred ccceEEEEecCCCcccccCcccCCeeeec--ccccccccccccccccccCCCccceeee
Confidence 45678999999999999999999999983 334555556654 47899999977765
No 97
>KOG0040|consensus
Probab=85.09 E-value=0.033 Score=61.23 Aligned_cols=58 Identities=21% Similarity=0.529 Sum_probs=50.7
Q ss_pred eeeeeeeecccCCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceeecCCC
Q psy7077 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229 (336)
Q Consensus 170 ~~~~al~df~a~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~~~~ 229 (336)
.++.|+|+|...++.+.+.++||+++.+ ....-.||.++++.+.|++|+.||+.+.+.
T Consensus 969 ~~v~alyd~q~kSprev~mKkgDvltll--~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 969 ECVLALYDYQEKSPREVTMKKGDVLTLL--NSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHHHHhcCHHHHHHhhhhHHHHH--hhcccccccchhhhhcCcchHHHHHHhccC
Confidence 3467999999999999999999998774 346678999999999999999999998855
No 98
>KOG3812|consensus
Probab=81.96 E-value=0.92 Score=43.07 Aligned_cols=46 Identities=24% Similarity=0.593 Sum_probs=34.7
Q ss_pred EEEecccCCCCCCC-------ccccCCCEEEEEee-cCCceeccc---CCCcccccc
Q psy7077 120 YIAAYPYDSTEPGD-------LTFNQDEVIYVTKK-ENDWWTGTI---GDRTARFRG 165 (336)
Q Consensus 120 ~~al~dy~~~~~~e-------Ls~~~Gd~i~v~~~-~~~Ww~g~~---~~~~g~~p~ 165 (336)
+++.-+|.+.-++| ++|...|.+.|.++ +++||.|+. ++..|++|.
T Consensus 61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 34455788776654 58999999999999 999999975 345577664
No 99
>KOG3812|consensus
Probab=80.57 E-value=0.42 Score=45.28 Aligned_cols=34 Identities=18% Similarity=0.421 Sum_probs=29.5
Q ss_pred CCCCCCCEEEEEeecCCCeEEEEe---CCceeEeeCC
Q psy7077 278 PIMGLGTVVPVKQNAEPGWLAGEL---RGQTGWFPES 311 (336)
Q Consensus 278 Lsf~~Gd~V~V~~~~~~~W~~g~~---~G~~G~fPsn 311 (336)
.+|+.-|.+.|.++.++.||.|++ ++..|++|+-
T Consensus 82 isF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPsp 118 (475)
T KOG3812|consen 82 ISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSP 118 (475)
T ss_pred eeeccccceeehhhcccchhHHHHhhcCCccccccch
Confidence 679999999999998888888864 7899999973
No 100
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=77.94 E-value=3.3 Score=28.97 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.1
Q ss_pred CCCCCEEEEEeecCCCeEEEEe
Q psy7077 280 MGLGTVVPVKQNAEPGWLAGEL 301 (336)
Q Consensus 280 f~~Gd~V~V~~~~~~~W~~g~~ 301 (336)
|++||.|.+.-..++.||.|..
T Consensus 3 ~~~G~~Ve~~~~~~~~W~~a~V 24 (61)
T smart00743 3 FKKGDRVEVFSKEEDSWWEAVV 24 (61)
T ss_pred cCCCCEEEEEECCCCEEEEEEE
Confidence 8999999999888999999865
No 101
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=65.65 E-value=7.9 Score=28.71 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=17.6
Q ss_pred CCCCCCCCEEEEEeec------CCCeEEEE
Q psy7077 277 SPIMGLGTVVPVKQNA------EPGWLAGE 300 (336)
Q Consensus 277 ~Lsf~~Gd~V~V~~~~------~~~W~~g~ 300 (336)
+|+++.||.|.|.... ++.||.|.
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~ 32 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQ 32 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEE
Confidence 4779999999998544 45666665
No 102
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=63.83 E-value=8.1 Score=38.86 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=30.7
Q ss_pred CCCCCCEEEEeeeecCCCCeEEEEe-eCceeeecccceee
Q psy7077 187 SFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEP 225 (336)
Q Consensus 187 s~~~Gdii~v~~~~~~~~gW~~g~~-~g~~G~fP~~yve~ 225 (336)
++..|+.|.|+ .....||+..+. +|+.||+-..||..
T Consensus 104 sl~~G~~V~Vl--~~~~ngW~kI~~~~GktGwV~~~YLs~ 141 (481)
T PRK13914 104 SIKGGTKVTVE--TTESNGWHKITYNDGKTGFVNGKYLTD 141 (481)
T ss_pred eecCCCEEEEe--ecccCCeEEEEcCCCCEEEEecccccC
Confidence 57899999984 235678999998 59999999999875
No 103
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=58.13 E-value=15 Score=25.58 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=18.9
Q ss_pred CCCCCCEEEEeeeecCCCCeEEEEee
Q psy7077 187 SFQPGDIIMVPVKQNAEPGWLAGELR 212 (336)
Q Consensus 187 s~~~Gdii~v~~~~~~~~gW~~g~~~ 212 (336)
.|++|+.|.+. ...+++||.|...
T Consensus 2 ~~~~G~~Ve~~--~~~~~~W~~a~V~ 25 (61)
T smart00743 2 DFKKGDRVEVF--SKEEDSWWEAVVT 25 (61)
T ss_pred CcCCCCEEEEE--ECCCCEEEEEEEE
Confidence 58899999994 3458899999753
No 104
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=54.90 E-value=10 Score=28.11 Aligned_cols=24 Identities=25% Similarity=0.801 Sum_probs=18.9
Q ss_pred CccccCCCEEEEEee-------cCCceeccc
Q psy7077 133 DLTFNQDEVIYVTKK-------ENDWWTGTI 156 (336)
Q Consensus 133 eLs~~~Gd~i~v~~~-------~~~Ww~g~~ 156 (336)
-|+++.||.|.|... +.+||.|..
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 478899999887654 589999874
No 105
>KOG3705|consensus
Probab=49.01 E-value=28 Score=34.15 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=34.5
Q ss_pred EEEEecccCCCCCCCccccCCCEEEEEee-cCCceeccc--CCCccccccc
Q psy7077 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTARFRGV 166 (336)
Q Consensus 119 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~--~~~~g~~p~~ 166 (336)
-.+++++..+...+||.++.||.|-|-.. =+|.-+|.+ -++.|.||+-
T Consensus 511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSy 561 (580)
T KOG3705|consen 511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSY 561 (580)
T ss_pred ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccc
Confidence 45788999999999999999999977653 111123333 2567999975
No 106
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=47.56 E-value=32 Score=23.86 Aligned_cols=34 Identities=15% Similarity=0.387 Sum_probs=23.1
Q ss_pred CCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecc
Q psy7077 186 LSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPE 220 (336)
Q Consensus 186 Ls~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~ 220 (336)
-.+..|+-|.|+. ...|..|..++...-.||+++
T Consensus 21 s~l~~gtPv~i~H-~S~D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 21 SALHPGTPVYILH-TSRDGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp EEE-TT-EEEEEE-E-TTSSEEEEE-SS-EEEEEG
T ss_pred cccCCCCCEEEEE-ECCCCCEEEEecCCeeEeeeC
Confidence 3567889998874 456778999999989999974
No 107
>KOG3580|consensus
Probab=46.90 E-value=25 Score=36.28 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=36.4
Q ss_pred eeeeeeeecccCCCCCCCCCCCCEEEEeee-ecC-CCCeEEEEeeC-----ceeeecc
Q psy7077 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVK-QNA-EPGWLAGELRG-----QTGWFPE 220 (336)
Q Consensus 170 ~~~~al~df~a~~~~eLs~~~Gdii~v~~~-~~~-~~gW~~g~~~g-----~~G~fP~ 220 (336)
.+.+..|.++...+..|.|.+|++..|... ... ...|+..+.+. .+|++|-
T Consensus 505 FyIRtHFE~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPN 562 (1027)
T KOG3580|consen 505 FYIRTHFECEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPN 562 (1027)
T ss_pred eEEeeeeeecCCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCC
Confidence 356778899999999999999999988421 112 23376666543 4799985
No 108
>KOG4384|consensus
Probab=45.60 E-value=15 Score=35.31 Aligned_cols=43 Identities=23% Similarity=0.314 Sum_probs=39.3
Q ss_pred CCCCCCCCEEEEEeecCCCeEEEEeCCceeEeeCCCeeecCCC
Q psy7077 277 SPIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319 (336)
Q Consensus 277 ~Lsf~~Gd~V~V~~~~~~~W~~g~~~G~~G~fPsnyV~~i~~~ 319 (336)
+|.+++||+|.++.+..-+-|.|-+++++|-|+.-||..+...
T Consensus 154 ~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~s~e 196 (361)
T KOG4384|consen 154 SLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVISEE 196 (361)
T ss_pred chhhcccchhhccccCccccccccccCcccccccceecccccc
Confidence 4779999999999999999999999999999999999987654
No 109
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=45.26 E-value=48 Score=22.98 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=22.4
Q ss_pred CCCCCEEEEEeec-CCCeEEEEeCCceeEeeC
Q psy7077 280 MGLGTVVPVKQNA-EPGWLAGELRGQTGWFPE 310 (336)
Q Consensus 280 f~~Gd~V~V~~~~-~~~W~~g~~~G~~G~fPs 310 (336)
+..|+-|.|+... |..|...+...-.||+++
T Consensus 23 l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 23 LHPGTPVYILHTSRDGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp E-TT-EEEEEEE-TTSSEEEEE-SS-EEEEEG
T ss_pred cCCCCCEEEEEECCCCCEEEEecCCeeEeeeC
Confidence 7889999998775 568888999999999985
No 110
>KOG0040|consensus
Probab=45.05 E-value=1.7 Score=48.71 Aligned_cols=81 Identities=19% Similarity=0.421 Sum_probs=57.3
Q ss_pred hhhccccccccccccCcChhhhHHHhcc-------cc--CccEEEEecccCCCCCCCccccCCCEEEEEee-cCCceecc
Q psy7077 86 VHLQLSTKEKDLEVNNSNLDDLKKTLAN-------MM--SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT 155 (336)
Q Consensus 86 ~~~qi~sk~~~l~~~~~~l~el~~~~~~-------~~--~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~ 155 (336)
+.+.-+...++++.+.+.+..|+..... .. .+....|+|+|....+.+.+.++||+...... +-+||..+
T Consensus 928 llkkhea~~~dl~af~~~i~~lr~qa~~cq~Q~tpv~~~g~~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve 1007 (2399)
T KOG0040|consen 928 LLKKHEALLSDLEAFGDSIQALREQANACRQQEAPVEDVGKECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVE 1007 (2399)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccch
Confidence 3333334445566666666666554321 11 11246689999999999999999999887776 89999999
Q ss_pred cCCCccccccc
Q psy7077 156 IGDRTARFRGV 166 (336)
Q Consensus 156 ~~~~~g~~p~~ 166 (336)
+..+.|++|..
T Consensus 1008 ~~d~qg~vpa~ 1018 (2399)
T KOG0040|consen 1008 VNDRQGFVPAA 1018 (2399)
T ss_pred hhhhcCcchHH
Confidence 99998988864
No 111
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=44.06 E-value=33 Score=25.40 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=27.3
Q ss_pred CCCCCEE--EEEeecCCCeEEEEeCCceeEeeCCCee
Q psy7077 280 MGLGTVV--PVKQNAEPGWLAGELRGQTGWFPESYVE 314 (336)
Q Consensus 280 f~~Gd~V--~V~~~~~~~W~~g~~~G~~G~fPsnyV~ 314 (336)
.++||+| .|.+..++||...-.++..|++|.+-+.
T Consensus 4 p~~GdiV~g~V~~i~~~g~~v~i~~~~~G~l~~se~~ 40 (86)
T cd05789 4 PEVGDVVIGRVTEVGFKRWKVDINSPYDAVLPLSEVN 40 (86)
T ss_pred CCCCCEEEEEEEEECCCEEEEECCCCeEEEEEHHHcc
Confidence 4789998 7778888888865556899999977553
No 112
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=40.91 E-value=46 Score=23.67 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=27.5
Q ss_pred CCCCCEE--EEEeecCCCeEEEEeCCceeEeeCCCeee
Q psy7077 280 MGLGTVV--PVKQNAEPGWLAGELRGQTGWFPESYVEP 315 (336)
Q Consensus 280 f~~Gd~V--~V~~~~~~~W~~g~~~G~~G~fPsnyV~~ 315 (336)
++.|+++ .|.+..+.|.+..-.+|..|++|.+.+..
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~ 39 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLGNGIEGFIPISELSD 39 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEESTSSEEEEEGGGSSS
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcEEEEEEeehhcC
Confidence 6789998 56677777887554459999999887763
No 113
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=35.69 E-value=39 Score=24.23 Aligned_cols=21 Identities=19% Similarity=0.484 Sum_probs=12.4
Q ss_pred CCCCCEEEEEeecC---CCeEEEE
Q psy7077 280 MGLGTVVPVKQNAE---PGWLAGE 300 (336)
Q Consensus 280 f~~Gd~V~V~~~~~---~~W~~g~ 300 (336)
|++|+.|.|..+.+ .-|+.+.
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~ 24 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPAT 24 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEE
Confidence 78999999998763 3577664
No 114
>KOG4384|consensus
Probab=34.48 E-value=23 Score=34.07 Aligned_cols=57 Identities=30% Similarity=0.413 Sum_probs=46.2
Q ss_pred eeeeeeeccc--CCCCCCCCCCCCEEEEeeeecCCCCeEEEEeeCceeeecccceeecCCC
Q psy7077 171 RYRAIYEFVS--RNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229 (336)
Q Consensus 171 ~~~al~df~a--~~~~eLs~~~Gdii~v~~~~~~~~gW~~g~~~g~~G~fP~~yve~~~~~ 229 (336)
.+++.-+|.. ...++|.+.+||++.++ ....-|-|.|-++++.|-|+.-||..+...
T Consensus 138 ~~~~~t~~tp~p~~~d~lk~~~~~~i~~~--~~~~~~~~~g~~~~kv~~f~~~~v~~~s~e 196 (361)
T KOG4384|consen 138 RARVHTDFTPSPYDTDSLKIKKGDIIDII--EKPPMGTWLGLLNNKVGSFKFIYVDVISEE 196 (361)
T ss_pred cccccccCCCCcccccchhhcccchhhcc--ccCccccccccccCcccccccceecccccc
Confidence 4556666664 57889999999999985 457778889999999999999999887643
No 115
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=34.38 E-value=94 Score=22.55 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=23.9
Q ss_pred CCCCCEE--EEEeecCCCeEEEEeCCceeEeeC
Q psy7077 280 MGLGTVV--PVKQNAEPGWLAGELRGQTGWFPE 310 (336)
Q Consensus 280 f~~Gd~V--~V~~~~~~~W~~g~~~G~~G~fPs 310 (336)
+++||+| .|.+-.+.|.|..-..|..|++|.
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~~v~G~v~~ 33 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSSSIVGRVLF 33 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCCCCEEEEEH
Confidence 4689988 566777888885555689999993
No 116
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=33.64 E-value=78 Score=23.18 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=27.1
Q ss_pred CCCCEE--EEEeecCCCeEEEEeCCceeEeeCCCee
Q psy7077 281 GLGTVV--PVKQNAEPGWLAGELRGQTGWFPESYVE 314 (336)
Q Consensus 281 ~~Gd~V--~V~~~~~~~W~~g~~~G~~G~fPsnyV~ 314 (336)
++||+| .|.+..+++|..--..+..|++|.+-+.
T Consensus 5 ~~GdiV~G~V~~v~~~~~~V~i~~~~~g~l~~~~~~ 40 (82)
T cd04454 5 DVGDIVIGIVTEVNSRFWKVDILSRGTARLEDSSAT 40 (82)
T ss_pred CCCCEEEEEEEEEcCCEEEEEeCCCceEEeechhcc
Confidence 689998 6778888888865556789999988764
No 117
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=26.06 E-value=75 Score=32.74 Aligned_cols=42 Identities=19% Similarity=0.698 Sum_probs=32.7
Q ss_pred CCEEEEEeec-----CCCeEEEEe-CCceeEeeCCCeeecCCCCCCCC
Q psy7077 283 GTVVPVKQNA-----EPGWLAGEL-RGQTGWFPESYVEPCDETGEVVP 324 (336)
Q Consensus 283 Gd~V~V~~~~-----~~~W~~g~~-~G~~G~fPsnyV~~i~~~~~~~~ 324 (336)
||+.+|.++. |-.|..-.+ +|..||+-..||+++........
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (549)
T PRK13545 375 GDIFTISDSNKNEKKDVEWIQITLSNGEIGWISTKFIEPFKSNNNIIE 422 (549)
T ss_pred CceEEEcccccccccCcceEEEEecCCccceeeeeeeeecccCCcccc
Confidence 8999998553 458888764 89999999999999876654443
No 118
>KOG1314|consensus
Probab=25.77 E-value=1.6e+02 Score=28.48 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=43.4
Q ss_pred ccccCcChhhhHHHhccccCccEEEEecccCC------------------CCCCCccccCCCEEEEEeecCCceeccc--
Q psy7077 97 LEVNNSNLDDLKKTLANMMSDKYYIAAYPYDS------------------TEPGDLTFNQDEVIYVTKKENDWWTGTI-- 156 (336)
Q Consensus 97 l~~~~~~l~el~~~~~~~~~~~~~~al~dy~~------------------~~~~eLs~~~Gd~i~v~~~~~~Ww~g~~-- 156 (336)
..++.-..+.|.++...+....++...++|.+ .++.-|++++||.|.+..--..|..|+.
T Consensus 279 c~qytlt~eql~qk~~kr~rsr~~~~~~~~tG~~~p~~k~G~~v~~~~pc~ddprisL~p~d~i~~tr~~~~wlyg~~~l 358 (414)
T KOG1314|consen 279 CVQYTLTIEQLTQKLDKRGRSRLFKCIEDVTGDCCPIFKQGIKVYEANPCTDDPRISLPPGDGIKATRGFNHWLYGEEIL 358 (414)
T ss_pred ccccceeHHHHHHHHHhhcCeEEEEeccCCCCCcccccccceeeeeeccCCCCcccccCCCcceeeeeeeecccchhhhh
Confidence 34455556666655533333334444554433 2344679999999988887888988832
Q ss_pred -----CC----Ccccccccc
Q psy7077 157 -----GD----RTARFRGVS 167 (336)
Q Consensus 157 -----~~----~~g~~p~~~ 167 (336)
.+ ..||||...
T Consensus 359 ~e~~~E~~~rkiRgwfP~~~ 378 (414)
T KOG1314|consen 359 SEMFNESRERKIRGWFPRNC 378 (414)
T ss_pred hHHHhhcchhhhcccccccc
Confidence 22 359999763
No 119
>KOG1314|consensus
Probab=24.80 E-value=84 Score=30.40 Aligned_cols=43 Identities=33% Similarity=0.702 Sum_probs=29.6
Q ss_pred CCCCCCCCCEEEEEeecCCCeEEEEe---------CC--ceeEeeCCC-eeecCCC
Q psy7077 276 PSPIMGLGTVVPVKQNAEPGWLAGEL---------RG--QTGWFPESY-VEPCDET 319 (336)
Q Consensus 276 ~~Lsf~~Gd~V~V~~~~~~~W~~g~~---------~G--~~G~fPsny-V~~i~~~ 319 (336)
|.+++++||.|.+.+-.+- |..|+. +. -+||||.+- ++..+.+
T Consensus 332 prisL~p~d~i~~tr~~~~-wlyg~~~l~e~~~E~~~rkiRgwfP~~~a~e~~e~~ 386 (414)
T KOG1314|consen 332 PRISLPPGDGIKATRGFNH-WLYGEEILSEMFNESRERKIRGWFPRNCAVEKCEKD 386 (414)
T ss_pred cccccCCCcceeeeeeeec-ccchhhhhhHHHhhcchhhhcccccccccccccccc
Confidence 3477999999999877654 454521 12 369999988 7766543
No 120
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=23.64 E-value=52 Score=22.66 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=7.3
Q ss_pred CCCCCEEEEE
Q psy7077 280 MGLGTVVPVK 289 (336)
Q Consensus 280 f~~Gd~V~V~ 289 (336)
|+.||+|.+.
T Consensus 1 f~~GDvV~LK 10 (53)
T PF09926_consen 1 FKIGDVVQLK 10 (53)
T ss_pred CCCCCEEEEc
Confidence 5678888765
No 121
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=23.45 E-value=1.7e+02 Score=20.64 Aligned_cols=35 Identities=14% Similarity=-0.033 Sum_probs=26.6
Q ss_pred CCCCCEE--EEEeecCCCeEEEEeCCceeEeeCCCee
Q psy7077 280 MGLGTVV--PVKQNAEPGWLAGELRGQTGWFPESYVE 314 (336)
Q Consensus 280 f~~Gd~V--~V~~~~~~~W~~g~~~G~~G~fPsnyV~ 314 (336)
++.|+++ .|.+..+.|.+..-.+|..|++|.+.+.
T Consensus 1 ~~~G~iv~g~V~~v~~~gi~v~l~~~~~g~v~~s~l~ 37 (73)
T cd05706 1 LKVGDILPGRVTKVNDRYVLVQLGNKVTGPSFITDAL 37 (73)
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCcEEEEEhhhcc
Confidence 3678888 6667777788866556899999987654
No 122
>COG5164 SPT5 Transcription elongation factor [Transcription]
Probab=23.01 E-value=2.2e+02 Score=28.68 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=23.9
Q ss_pred CCCCCEEEEEee---cCCCeEEEEeCCceeEeeCCCeee
Q psy7077 280 MGLGTVVPVKQN---AEPGWLAGELRGQTGWFPESYVEP 315 (336)
Q Consensus 280 f~~Gd~V~V~~~---~~~~W~~g~~~G~~G~fPsnyV~~ 315 (336)
|.+||.|.|++- ++-+---...++++=+.|.+|-..
T Consensus 140 f~~gD~vkVI~g~~~~d~g~V~rI~~~~vtF~s~~~~~e 178 (607)
T COG5164 140 FYKGDLVKVIEGGEMVDIGTVPRIDGEKVTFNSENFKSE 178 (607)
T ss_pred cccCCeEEEeccccccccceEEEecCceeEEcccccccc
Confidence 899999999943 444555444466666666666543
No 123
>PRK08582 hypothetical protein; Provisional
Probab=22.15 E-value=1.8e+02 Score=24.16 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=27.5
Q ss_pred CCCCCCEE--EEEeecCCCeEEEEeCCceeEeeCCCee
Q psy7077 279 IMGLGTVV--PVKQNAEPGWLAGELRGQTGWFPESYVE 314 (336)
Q Consensus 279 sf~~Gd~V--~V~~~~~~~W~~g~~~G~~G~fPsnyV~ 314 (336)
+++.|+++ .|..-.+.|.+..-.++..|++|.+-+.
T Consensus 2 ~~kvG~iv~G~V~~I~~fG~fV~L~~~~~GlVhiSels 39 (139)
T PRK08582 2 SIEVGSKLQGKVTGITNFGAFVELPEGKTGLVHISEVA 39 (139)
T ss_pred CCcCCCEEEEEEEEEECCeEEEEECCCCEEEEEeeccC
Confidence 47889998 5667777788866667899999976653
No 124
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=21.25 E-value=1.7e+02 Score=19.53 Aligned_cols=21 Identities=14% Similarity=0.455 Sum_probs=18.2
Q ss_pred CCCCCEEEEEeecCCCeEEEEe
Q psy7077 280 MGLGTVVPVKQNAEPGWLAGEL 301 (336)
Q Consensus 280 f~~Gd~V~V~~~~~~~W~~g~~ 301 (336)
++.|+.|.+.- .++-|+.++.
T Consensus 3 ~~~G~~~~a~~-~d~~wyra~I 23 (57)
T smart00333 3 FKVGDKVAARW-EDGEWYRARI 23 (57)
T ss_pred CCCCCEEEEEe-CCCCEEEEEE
Confidence 78999999888 8889998875
No 125
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=20.89 E-value=1.2e+02 Score=20.47 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=22.3
Q ss_pred CCCEE--EEEeecCCCeEEEEeCCceeEeeCCCee
Q psy7077 282 LGTVV--PVKQNAEPGWLAGELRGQTGWFPESYVE 314 (336)
Q Consensus 282 ~Gd~V--~V~~~~~~~W~~g~~~G~~G~fPsnyV~ 314 (336)
.|+++ .|.+..+.|++..-.++..|++|.+.+.
T Consensus 2 ~G~~v~g~V~~v~~~g~~v~i~~~~~g~l~~~~~~ 36 (72)
T smart00316 2 VGDVVEGTVTEITPFGAFVDLGNGVEGLIPISELS 36 (72)
T ss_pred CCCEEEEEEEEEEccEEEEEeCCCCEEEEEHHHCC
Confidence 47776 4556666677754444899999987654
Done!