RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7077
(336 letters)
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 100 bits (249), Expect = 2e-25
Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 20/130 (15%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF------------- 163
+ Y A Y+ T ++ + +V+ V +K E+ WW + +
Sbjct: 12 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDE 71
Query: 164 ----RGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP 219
Y AI + + GDE+S G+ + V GW TG+FP
Sbjct: 72 TEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVE--VIHKLLDGWWVIRKDDVTGYFP 129
Query: 220 ESYVEPCDET 229
Y++ +
Sbjct: 130 SMYLQKSGQD 139
Score = 95.1 bits (236), Expect = 1e-23
Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 28/156 (17%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
+ YRAI ++ +G E++ GD++ V K E GW +++ + GW P S++EP
Sbjct: 9 IILQTYRAIADYEKTSGSEMALSTGDVVEVVEKS--ESGWWFCQMKAKRGWIPASFLEPL 66
Query: 227 DETGEVVPGTELPGDKHHLEL---IAEVPENISDSGGSGIAVEEGPGIPADIPSPIMGLG 283
D E + ++ + A + +S + E G
Sbjct: 67 DSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVS--------LLE---------------G 103
Query: 284 TVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
V V GW TG+FP Y++ +
Sbjct: 104 EAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQD 139
Score = 49.6 bits (118), Expect = 2e-07
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 99 VNNSNLDDLKKTLANMMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIG 157
+ + D + + + Y+A Y + E +++ + E + V K + WW
Sbjct: 63 LEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD 122
Query: 158 DRTARF 163
D T F
Sbjct: 123 DVTGYF 128
Score = 45.4 bits (107), Expect = 5e-06
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVP 324
G VV V + +E GW +++ + GW P S++EP D E
Sbjct: 33 GDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETED 74
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 94.5 bits (235), Expect = 2e-24
Identities = 33/65 (50%), Positives = 39/65 (60%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
G S YRA+Y F +RN DE+SF GDII V K EPGWL G +G GWFP +YVE
Sbjct: 1 GSSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60
Query: 225 PCDET 229
+
Sbjct: 61 KMPSS 65
Score = 52.1 bits (125), Expect = 5e-09
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 286 VPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
V K EPGWL G +G GWFP +YVE +
Sbjct: 32 VDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS 65
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 92.5 bits (230), Expect = 8e-24
Identities = 22/76 (28%), Positives = 32/76 (42%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
G S A+ +++ N LSF GD+I + EPGW G G++G FP V+
Sbjct: 4 GSSGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQ 63
Query: 225 PCDETGEVVPGTELPG 240
P + G
Sbjct: 64 PAAAPDFSFSKEQRSG 79
Score = 54.0 bits (130), Expect = 8e-10
Identities = 12/45 (26%), Positives = 17/45 (37%)
Query: 286 VPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPGTELPG 330
+ EPGW G G++G FP V+P + G
Sbjct: 35 LLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAPDFSFSKEQRSG 79
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 96.0 bits (238), Expect = 6e-23
Identities = 36/238 (15%), Positives = 65/238 (27%), Gaps = 46/238 (19%)
Query: 127 DSTEPGD--LTFNQDEVIYVTK---------KENDWWTGTIGDRTARFRGVSE------- 168
DS+ PG+ LT + + KE+ + F +
Sbjct: 71 DSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKM 130
Query: 169 ----------------YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR 212
++F +L F+ G+ + + + + + W A
Sbjct: 131 RVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEI-LSKTNQDWWEARNAL 189
Query: 213 GQTGWFPESYVEPCDETGEVVPGTELPGDKHHLELIAEVPENISDSGGSGIAVEEGPGIP 272
G TG P +YV+ E + + + I ++
Sbjct: 190 GTTGLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAK 249
Query: 273 ADIPSPIMGL-----------GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
A + + G V V Q G EL GQ G P +Y+ +
Sbjct: 250 AKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAVS 307
Score = 76.8 bits (188), Expect = 4e-16
Identities = 26/229 (11%), Positives = 53/229 (23%), Gaps = 57/229 (24%)
Query: 51 QRLKITKDHTIKAKEEGDLKDTQSSSDGSQDVFCSVHLQLSTKEKDLEVNNSNLDDLKKT 110
+ I+ E + + + F + L+ + +
Sbjct: 86 DEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKM-----RVLTEASLLA 140
Query: 111 LANMMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIG------------ 157
+ + + + DL F Q E + + K DWW
Sbjct: 141 AYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYV 200
Query: 158 -------------------------------------DRTARFRGVSEYRRYRAIYEFVS 180
D + + +
Sbjct: 201 QIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNA 260
Query: 181 RNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
+ +L + G ++V K + G EL GQ G P +Y+ +
Sbjct: 261 YDPTQLRVKKGQTVLVTQKMS--NGMYKAELDGQIGSVPHTYLRFTAVS 307
Score = 29.4 bits (65), Expect = 1.5
Identities = 7/54 (12%), Positives = 14/54 (25%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPGTELPGDKHHLE 336
++ + E G A ++ FP+ V+ L
Sbjct: 93 HYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPI 146
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 87.4 bits (217), Expect = 4e-22
Identities = 23/69 (33%), Positives = 33/69 (47%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
S A Y F +R+ ELS + GD++ + + + GW GE G+ GWFP +YVE
Sbjct: 5 SSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEE 64
Query: 227 DETGEVVPG 235
G
Sbjct: 65 GIQSGPSSG 73
Score = 50.0 bits (120), Expect = 2e-08
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 289 KQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPG 325
+ + GW GE G+ GWFP +YVE G
Sbjct: 37 RIGGDQGWWKGETNGRIGWFPSTYVEEEGIQSGPSSG 73
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 86.9 bits (216), Expect = 5e-22
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
+ +R+ +A+Y + + ELSF G + V + EPGWL G L G+TG PE+YVE
Sbjct: 8 TPFRKAKALYACKAEHDSELSFTAGTVFDN-VHPSQEPGWLEGTLNGKTGLIPENYVEF 65
Score = 50.3 bits (121), Expect = 1e-08
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 288 VKQNAEPGWLAGELRGQTGWFPESYVEP 315
V + EPGWL G L G+TG PE+YVE
Sbjct: 38 VHPSQEPGWLEGTLNGKTGLIPENYVEF 65
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 85.9 bits (213), Expect = 2e-21
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
S R+ R +Y++ + N ELS ++I V + WL GE Q G P +Y+E
Sbjct: 15 SNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELL 74
Query: 227 DET 229
+
Sbjct: 75 NSG 77
Score = 45.8 bits (109), Expect = 6e-07
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 289 KQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
+ WL GE Q G P +Y+E +
Sbjct: 47 VVGMDSDWLMGERGNQKGKVPITYLELLNSG 77
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 84.9 bits (211), Expect = 3e-21
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG 230
Y Y++ + + DEL+ + G+II VK+ E GWL GEL G+ G FP+++V+
Sbjct: 3 DYIVEYDYDAVHDDELTIRVGEIIRN-VKKLQEEGWLEGELNGRRGMFPDNFVKEIKRET 61
Query: 231 E 231
E
Sbjct: 62 E 62
Score = 51.8 bits (125), Expect = 3e-09
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 288 VKQNAEPGWLAGELRGQTGWFPESYVEPCDETGE 321
VK+ E GWL GEL G+ G FP+++V+ E
Sbjct: 29 VKKLQEEGWLEGELNGRRGMFPDNFVKEIKRETE 62
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 83.8 bits (208), Expect = 7e-21
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
R ++ + N DEL+F+ G+II + K+ E GW GEL G+ G FP+++
Sbjct: 7 EYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQ 62
Score = 47.6 bits (114), Expect = 8e-08
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 289 KQNAEPGWLAGELRGQTGWFPESYVEP 315
K+ E GW GEL G+ G FP+++
Sbjct: 36 KETGEAGWWKGELNGKEGVFPDNFAVQ 62
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 83.1 bits (206), Expect = 1e-20
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
G S + YRA+Y++ ++N DEL GDI+ V + + E GW E GQ G+ P SY+E
Sbjct: 4 GSSGAQEYRALYDYTAQNPDELDLSAGDILEV-ILEG-EDGWWTVERNGQRGFVPGSYLE 61
Query: 225 PCDE 228
Sbjct: 62 KLSG 65
Score = 50.3 bits (121), Expect = 1e-08
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF 163
+ Y A Y Y + P +L + +++ V + E+ WWT +
Sbjct: 9 QEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFV 55
Score = 48.0 bits (115), Expect = 7e-08
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
G ++ V E GW E GQ G+ P SY+E
Sbjct: 30 GDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSG 65
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 82.8 bits (205), Expect = 2e-20
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
+ I+ + ++N DEL+ + GDI+ + K + GW GEL G+ G FP+++V+
Sbjct: 10 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPD 69
Query: 230 GE 231
E
Sbjct: 70 FE 71
Score = 48.1 bits (115), Expect = 7e-08
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 289 KQNAEPGWLAGELRGQTGWFPESYVEPCDETGE 321
K + GW GEL G+ G FP+++V+ E
Sbjct: 39 KDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFE 71
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 82.9 bits (205), Expect = 3e-20
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 164 RGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
RG RR + + ++ +N DEL + GDII V V + E GW G L G+TG FP +++
Sbjct: 13 RGERRRRRCQVAFSYLPQNDDELELKVGDIIEV-VGEV-EEGWWEGVLNGKTGMFPSNFI 70
Query: 224 EPC-DETGEVVPGTELPGDKHH 244
+ E+ E+ + HH
Sbjct: 71 KELSGESDELGISQDEHHHHHH 92
Score = 50.1 bits (120), Expect = 2e-08
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPC-DETGEVVPGTELPGDKHH 334
G ++ V E GW G L G+TG FP ++++ E+ E+ + HH
Sbjct: 40 GDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDELGISQDEHHHHHH 92
Score = 48.6 bits (116), Expect = 7e-08
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTARF 163
+ A+ Y +L ++I V + + WW G + +T F
Sbjct: 19 RRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMF 65
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 82.0 bits (203), Expect = 4e-20
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
S +A + F N DELS GDII V + E GW G L G+TGWFP +YV
Sbjct: 8 SHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVE--EGGWWEGTLNGRTGWFPSNYVREI 65
Query: 227 DETGEVVPGT 236
+ P +
Sbjct: 66 KSSERSGPSS 75
Score = 50.0 bits (120), Expect = 2e-08
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 109 KTLANMMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF 163
+ ++ A + + T +L+ + ++IYVT+ E WW GT+ RT F
Sbjct: 2 SSGSSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWF 57
Score = 50.0 bits (120), Expect = 2e-08
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPGT 326
G ++ V + E GW G L G+TGWFP +YV + P +
Sbjct: 32 GDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSERSGPSS 75
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 81.9 bits (203), Expect = 4e-20
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
+ I+ + ++N DEL+ + GDI+ + K + GW GEL G+ G FP+++V+
Sbjct: 3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPL 62
Score = 47.6 bits (114), Expect = 8e-08
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 289 KQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
K + GW GEL G+ G FP+++V+
Sbjct: 32 KDCIDVGWWEGELNGRRGVFPDNFVKLLPPL 62
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 81.2 bits (201), Expect = 7e-20
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
+ I+ + ++N DEL+ + GDI+ + K + GW GEL G+ G FP+++V+
Sbjct: 8 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL 64
Score = 46.5 bits (111), Expect = 2e-07
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 289 KQNAEPGWLAGELRGQTGWFPESYVEPC 316
K + GW GEL G+ G FP+++V+
Sbjct: 37 KDCIDVGWWEGELNGRRGVFPDNFVKLL 64
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 81.1 bits (201), Expect = 9e-20
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
S +R ++ FV +EL PG+I+ V +K+ W GQ G P +Y+EP
Sbjct: 5 SSGEAHRVLFGFVPETKEELQVMPGNIVFV-LKKG-NDNWATVMFNGQKGLVPCNYLEP 61
Score = 48.7 bits (117), Expect = 4e-08
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRT 160
S + + + + +L +++V KK ND W T +
Sbjct: 6 SGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQK 51
Score = 46.8 bits (112), Expect = 2e-07
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
G +V V + W GQ G P +Y+EP
Sbjct: 29 GNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEP 61
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 80.9 bits (200), Expect = 1e-19
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
S R +A+Y F +R DEL+ + GDI+++ K+ E GW G L G+ G FP +YVE
Sbjct: 5 SSGRLCKALYSFQARQDDELNLEKGDIVIIHEKK--EEGWWFGSLNGKKGHFPAAYVEEL 62
Query: 227 DETGEVVP 234
Sbjct: 63 PSNAGNTA 70
Score = 48.1 bits (115), Expect = 8e-08
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVP 324
G +V + + E GW G L G+ G FP +YVE
Sbjct: 29 GDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGNTA 70
Score = 47.7 bits (114), Expect = 1e-07
Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF 163
S + A Y + + + +L + +++ + +K E WW G++ + F
Sbjct: 6 SGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHF 54
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 82.0 bits (202), Expect = 2e-19
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
G + +A Y+F +R+ ELS + GDII + + + + GW GE+ G+ GWFP +YVE
Sbjct: 1 GPGTFGTAKARYDFCARDRSELSLKEGDIIKI-LNKKGQQGWWRGEIYGRIGWFPSNYVE 59
Query: 225 PCDETGEVVPGTELPGDKHHLE------LIAEVPENISDSGGSGIAVE 266
G + L E D+ + +
Sbjct: 60 EDYSEYLPETGGGSGSSMTYKLILNGKTLKGETTTEAVDAATAEKVFK 107
Score = 45.8 bits (108), Expect = 2e-06
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 283 GTVVPV-KQNAEPGWLAGELRGQTGWFPESYVEPCDETGE 321
G ++ + + + GW GE+ G+ GWFP +YVE
Sbjct: 27 GDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEYL 66
Score = 29.7 bits (66), Expect = 0.69
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 119 YYIAAYPYDSTEPGDLTFNQ-DEVIYVTKKEND 150
Y D+ G+ T++ + VT+ +
Sbjct: 104 KVFKQYANDNGVDGEWTYDDATKTFTVTEHSLE 136
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 80.6 bits (199), Expect = 2e-19
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 154 GTIGDRTARFRGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVK--QNAEPGWLAG-- 209
G+ G +R + + + IY + +N DEL PGD I + + GW+ G
Sbjct: 1 GSSGSSGSRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTS 60
Query: 210 ELRGQTGWFPESYVEPCDET 229
G +G PE+Y+ DE
Sbjct: 61 LTTGCSGLLPENYITKADEC 80
Score = 42.5 bits (100), Expect = 1e-05
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 289 KQNAEPGWLAG--ELRGQTGWFPESYVEPCDET 319
+ + GW+ G G +G PE+Y+ DE
Sbjct: 48 QTSTSEGWIYGTSLTTGCSGLLPENYITKADEC 80
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 79.1 bits (196), Expect = 3e-19
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
AIY + ++ DE+S PGDII V ++ + GW GE G G FP SY +
Sbjct: 2 AMEAIYAYEAQGDDEISIDPGDIITV-IRGDDGSGWTYGECDGLKGLFPTSYCK 54
Score = 46.0 bits (110), Expect = 2e-07
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 122 AAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTARF 163
A Y Y++ +++ + ++I V + ++ W G F
Sbjct: 5 AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLF 48
Score = 45.2 bits (108), Expect = 4e-07
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 288 VKQNAEPGWLAGELRGQTGWFPESYVE 314
++ + GW GE G G FP SY +
Sbjct: 28 IRGDDGSGWTYGECDGLKGLFPTSYCK 54
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 78.8 bits (195), Expect = 5e-19
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
S + +RA+Y F R DEL F+ GDII + + + W G +G+TG P +YV
Sbjct: 5 SSGKVFRALYTFEPRTPDELYFEEGDIIYI-TDMS-DTNWWKGTSKGRTGLIPSNYVAEQ 62
Query: 227 DE 228
Sbjct: 63 SG 64
Score = 51.8 bits (125), Expect = 3e-09
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRT 160
S K + A Y ++ P +L F + ++IY+T + +WW GT RT
Sbjct: 6 SGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRT 51
Score = 46.8 bits (112), Expect = 1e-07
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
G ++ + ++ W G +G+TG P +YV
Sbjct: 29 GDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQSG 64
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 78.8 bits (195), Expect = 6e-19
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
S R RA ++F ++ EL Q GDI+ + KQ + W GE G+ G FP +Y+E
Sbjct: 5 SSGRPARAKFDFKAQTLKELPLQKGDIVYI-YKQI-DQNWYEGEHHGRVGIFPRTYIELL 62
Query: 227 DE 228
Sbjct: 63 SG 64
Score = 48.8 bits (117), Expect = 3e-08
Identities = 8/46 (17%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRT 160
S + A + + + +L + +++Y+ K+ + +W+ G R
Sbjct: 6 SGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRV 51
Score = 47.2 bits (113), Expect = 1e-07
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
G +V + + + W GE G+ G FP +Y+E
Sbjct: 29 GDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLSG 64
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 78.8 bits (195), Expect = 6e-19
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
S+ R+ + ++E++ +N DEL + GDII + ++ E GW +G L + G FP ++V+
Sbjct: 5 SKKRQCKVLFEYIPQNEDELELKVGDIIDI-NEEV-EEGWWSGTLNNKLGLFPSNFVKEL 62
Query: 227 DET 229
+ T
Sbjct: 63 EVT 65
Score = 50.3 bits (121), Expect = 1e-08
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF 163
+ + Y +L ++I + ++ E WW+GT+ ++ F
Sbjct: 8 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLF 54
Score = 47.6 bits (114), Expect = 1e-07
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
G ++ + + E GW +G L + G FP ++V+ + T
Sbjct: 29 GDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEVT 65
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 78.9 bits (195), Expect = 7e-19
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
S RR +A+ +F + DEL F+ DII + ++ + GEL G GWFP +VE
Sbjct: 5 SSGRRAKALLDFERHDDDELGFRKNDIITIISQK--DEHCWVGELNGLRGWFPAKFVEVL 62
Query: 227 DETGEVVPGTELP 239
DE + P
Sbjct: 63 DERSKEYSIASGP 75
Score = 48.9 bits (117), Expect = 4e-08
Identities = 8/49 (16%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
S + A ++ + +L F ++++I + +++ W G + F
Sbjct: 6 SGRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWF 54
Score = 46.9 bits (112), Expect = 2e-07
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPGTELP 329
++ + + GEL G GWFP +VE DE + P
Sbjct: 29 NDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKEYSIASGP 75
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 78.6 bits (194), Expect = 9e-19
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 167 SEYRRYRAIYEFVS-RNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYV 223
S ++ + I+ + N LSF GD++ + + + GWL GE GWFP SY
Sbjct: 5 SSGQKVKTIFPHTAGNNKTLLSFAQGDVLTL-LIPEEKDGWLYGEHDTTKARGWFPSSYT 63
Query: 224 EPCDE 228
+
Sbjct: 64 KLLSG 68
Score = 44.7 bits (106), Expect = 1e-06
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 288 VKQNAEPGWLAGELR--GQTGWFPESYVEPCDE 318
+ + GWL GE GWFP SY +
Sbjct: 36 LIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG 68
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 78.0 bits (193), Expect = 1e-18
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 166 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
+ + + A++ + + ++L FQ GDII+V + + WL GE +G+ G FP+ +VE
Sbjct: 2 LKKGSQVEALFSYEATQPEDLEFQEGDIILV-LSKV-NEEWLEGESKGKVGIFPKVFVED 59
Query: 226 CD 227
Sbjct: 60 SA 61
Score = 54.5 bits (132), Expect = 3e-10
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
A + Y++T+P DL F + ++I V K N +W G + F
Sbjct: 6 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIF 52
Score = 48.0 bits (115), Expect = 6e-08
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 317
G ++ V WL GE +G+ G FP+ +VE
Sbjct: 27 GDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA 61
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 77.7 bits (192), Expect = 1e-18
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 170 RRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPC 226
++ + I+ N LSF GD+I + + + + GWL GE GWFP SY +
Sbjct: 7 QKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKD-GWLYGEHDVSKARGWFPSSYTKLL 65
Query: 227 DE 228
+E
Sbjct: 66 EE 67
Score = 45.0 bits (107), Expect = 7e-07
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 288 VKQNAEPGWLAGELR--GQTGWFPESYVEPCDE 318
+ + GWL GE GWFP SY + +E
Sbjct: 35 LIPEEKDGWLYGEHDVSKARGWFPSSYTKLLEE 67
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 83.9 bits (206), Expect = 2e-18
Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
R A+++F + EL+F+ GD+I + + N WL G +RG TG FP S+V+ +
Sbjct: 175 PRAEALFDFTGNSKLELNFKAGDVIFLLSRIN--KDWLEGTVRGATGIFPLSFVKILKDF 232
Query: 230 GEVVPGTELPGDKHHLELIAEVPEN--ISDSGGSGIAVEEGPGIPADIPSPIMGL----- 282
E T ++ + I+ + + D + + + + + L
Sbjct: 233 PEEDDPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDA 292
Query: 283 -GTVVPVKQNAEPGWLAGELRG---QTGWFP-ESYVEPCDE 318
G +V + + + + + RG Q FP + ++ D
Sbjct: 293 EGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKDN 333
Score = 50.0 bits (118), Expect = 5e-07
Identities = 28/196 (14%), Positives = 48/196 (24%), Gaps = 32/196 (16%)
Query: 169 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 228
YRRYR + S+ + P A G E + +
Sbjct: 58 YRRYRQFHALQSKLEERFGPDSKS----SALAXTLPTLPAKVYVGVKQEIAEMRIPALNA 113
Query: 229 -TGEVVPGTELPGDKHHLELIAEVPENISDSGGSGIAVEEGPGIPADIPSPIMGL----- 282
++ + + S+ + SP
Sbjct: 114 YMKSLLSLPVWVLMDEDVRIFFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMA 173
Query: 283 ----------------------GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG 320
G V+ + WL G +RG TG FP S+V+ +
Sbjct: 174 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFP 233
Query: 321 EVVPGTELPGDKHHLE 336
E T ++ +
Sbjct: 234 EEDDPTNWLRCYYYED 249
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 77.2 bits (191), Expect = 2e-18
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 166 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
+ ++ R A+++F + EL+F+ GD+I + + + WL G +RG TG FP S+V+
Sbjct: 1 LIKHMRAEALFDFTGNSKLELNFKAGDVIFL-LSRI-NKDWLEGTVRGATGIFPLSFVKI 58
Score = 55.2 bits (134), Expect = 1e-10
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 114 MMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
++ A + + +L F +VI++ + N DW GT+ T F
Sbjct: 1 LIKHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIF 51
Score = 44.0 bits (105), Expect = 1e-06
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
G V+ + WL G +RG TG FP S+V+
Sbjct: 26 GDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 58
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 77.3 bits (191), Expect = 2e-18
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
RA + F N DELSF GD+I V + E GW G G+TGWFP +YV +
Sbjct: 7 LVVRAKFNFQQTNEDELSFSKGDVIHV-TRVE-EGGWWEGTHNGRTGWFPSNYVREIKPS 64
Score = 49.9 bits (120), Expect = 1e-08
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF 163
S A + + T +L+F++ +VI+VT+ E WW GT RT F
Sbjct: 5 SQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWF 53
Score = 46.5 bits (111), Expect = 2e-07
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
G V+ V + E GW G G+TGWFP +YV +
Sbjct: 28 GDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKPS 64
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 76.9 bits (190), Expect = 2e-18
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
RR + + ++ +N DEL + GDII V V + E GW G L G+TG FP ++++
Sbjct: 8 RRCQVAFSYLPQNDDELELKVGDIIEV-VGEV-EEGWWEGVLNGKTGMFPSNFIKE 61
Score = 48.8 bits (117), Expect = 3e-08
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTARF 163
S + A+ Y +L ++I V + + WW G + +T F
Sbjct: 6 SGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMF 54
Score = 45.7 bits (109), Expect = 4e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
G ++ V E GW G L G+TG FP ++++
Sbjct: 29 GDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKE 61
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 76.5 bits (189), Expect = 3e-18
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
RA + F N DELSF GD+I V + E GW G G+TGWFP +YV
Sbjct: 5 SVVRAKFNFQQTNEDELSFSKGDVIHVTRVE--EGGWWEGTHNGRTGWFPSNYVRE 58
Score = 49.9 bits (120), Expect = 1e-08
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF 163
A + + T +L+F++ +VI+VT+ E WW GT RT F
Sbjct: 6 VVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWF 51
Score = 45.7 bits (109), Expect = 3e-07
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
G V+ V + E GW G G+TGWFP +YV
Sbjct: 26 GDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 58
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 76.9 bits (190), Expect = 3e-18
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
+ R ++F +++ EL+ Q GDI+ + K+ + WL GE G+ G FP +YVE
Sbjct: 2 KAARLKFDFQAQSPKELTLQKGDIVYI-HKEV-DKNWLEGEHHGRLGIFPANYVEV 55
Score = 49.5 bits (119), Expect = 2e-08
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
K + + + P +LT + +++Y+ K+ + +W G R F
Sbjct: 2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIF 48
Score = 45.7 bits (109), Expect = 5e-07
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
G +V + + + WL GE G+ G FP +YVE
Sbjct: 23 GDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 55
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 76.4 bits (189), Expect = 3e-18
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 168 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
E + +A+++F + EL+F+ GD+I + + ++ +P W G+L + G FP +YV P +
Sbjct: 1 ETKFVQALFDFNPQESGELAFKRGDVITL-INKD-DPNWWEGQLNNRRGIFPSNYVCPYN 58
Score = 55.6 bits (135), Expect = 1e-10
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
K+ A + ++ E G+L F + +VI + K++ +WW G + +R F
Sbjct: 3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIF 49
Score = 46.4 bits (111), Expect = 2e-07
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 317
G V+ + +P W G+L + G FP +YV P +
Sbjct: 24 GDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPYN 58
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 76.0 bits (188), Expect = 4e-18
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
+ +RA+Y F R DEL F+ GDII + + + W G +G+TG P +YV
Sbjct: 4 KVFRALYTFEPRTPDELYFEEGDIIYI-TDMS-DTNWWKGTSKGRTGLIPSNYVA 56
Score = 54.8 bits (133), Expect = 2e-10
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
K + A Y ++ P +L F + ++IY+T + +WW GT RT
Sbjct: 4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLI 50
Score = 43.7 bits (104), Expect = 2e-06
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G ++ + ++ W G +G+TG P +YV
Sbjct: 25 GDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 56
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 76.6 bits (189), Expect = 4e-18
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
G S +Y + + S++ DE+ F+ G + V +++N GW G+ GW P SY++
Sbjct: 4 GSSGEEKYVTVQPYTSQSKDEIGFEKGVTVEV-IRKN-LEGWWYIRYLGKEGWAPASYLK 61
Query: 225 PCDETG 230
++G
Sbjct: 62 KAKDSG 67
Score = 51.9 bits (125), Expect = 3e-09
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRT 160
++ Y+ PY S ++ F + + V +K WW +
Sbjct: 7 GEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKE 52
Score = 46.5 bits (111), Expect = 2e-07
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG 320
G V V + GW G+ GW P SY++ ++G
Sbjct: 30 GVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDSG 67
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 76.2 bits (188), Expect = 4e-18
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 170 RRYRAIYEFVS-RNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPC 226
R +AI+ + N LSF+ GD+I + V + A GW GE GWFP SY
Sbjct: 8 MRVKAIFSHAAGDNSTLLSFKEGDLITLLVPE-ARDGWHYGESEKTKMRGWFPFSYTRVL 66
Query: 227 D 227
D
Sbjct: 67 D 67
Score = 43.1 bits (102), Expect = 3e-06
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 288 VKQNAEPGWLAGELR--GQTGWFPESYVEPCD 317
+ A GW GE GWFP SY D
Sbjct: 36 LVPEARDGWHYGESEKTKMRGWFPFSYTRVLD 67
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 76.1 bits (188), Expect = 5e-18
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
R+ + ++E++ +N DEL + GDII + ++ E GW +G L + G FP ++V+ +
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDIIDI-NEEV-EEGWWSGTLNNKLGLFPSNFVKELELE 59
Score = 49.9 bits (120), Expect = 1e-08
Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTARF 163
+ + Y +L ++I + ++ + WW+GT+ ++ F
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLF 48
Score = 46.1 bits (110), Expect = 3e-07
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
G ++ + + E GW +G L + G FP ++V+ +
Sbjct: 23 GDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELE 59
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 76.2 bits (188), Expect = 5e-18
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 164 RGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 223
R A Y+F + DELSF+ GDI+ V + + + W EL G+ G+ P++Y+
Sbjct: 4 RASVGSMEAIAKYDFKATADDELSFKRGDILKV-LNEECDQNWYKAELNGKDGFIPKNYI 62
Query: 224 EPCDETGEVVP 234
E +V
Sbjct: 63 EMKPHPEFIVT 73
Score = 44.2 bits (105), Expect = 2e-06
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 288 VKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVP 324
+ + + W EL G+ G+ P++Y+E +V
Sbjct: 37 LNEECDQNWYKAELNGKDGFIPKNYIEMKPHPEFIVT 73
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 76.1 bits (188), Expect = 6e-18
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
S R +A+ + +N +L F GD+I++ +Q + W GE+ G +G FP S VE
Sbjct: 5 SSGPRAKALCNYRGKNPGDLKFNKGDVILL-RRQL-DENWYQGEINGVSGIFPASSVEVI 62
Query: 227 DE 228
Sbjct: 63 SG 64
Score = 50.7 bits (122), Expect = 7e-09
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
A Y PGDL FN+ +VI + ++ + +W+ G I + F
Sbjct: 9 RAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIF 54
Score = 44.5 bits (106), Expect = 1e-06
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
G V+ +++ + W GE+ G +G FP S VE
Sbjct: 29 GDVILLRRQLDENWYQGEINGVSGIFPASSVEVISG 64
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 75.7 bits (187), Expect = 7e-18
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 228
+++ +++ DEL+ G+II K+ + GW G++ G+ G FP+++V +
Sbjct: 3 EAIVEFDYQAQHDDELTISVGEIITNIRKE--DGGWWEGQINGRRGLFPDNFVREIKK 58
Score = 49.1 bits (118), Expect = 2e-08
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTARF 163
I + Y + +LT + E+I +KE+ WW G I R F
Sbjct: 5 IVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLF 48
Score = 47.1 bits (113), Expect = 1e-07
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
G ++ + + GW G++ G+ G FP+++V +
Sbjct: 23 GEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIKK 58
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 82.0 bits (201), Expect = 7e-18
Identities = 32/175 (18%), Positives = 59/175 (33%), Gaps = 24/175 (13%)
Query: 168 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
R +Y+F + ++L F+ G+I+++ +++ E W A G+ G P YVE
Sbjct: 124 NLEYVRTLYDFPGNDAEDLPFKKGEILVI-IEKPEEQWWSARNKDGRVGMIPVPYVEKLV 182
Query: 228 ETGEVVPGTELPGDKHHLELIAEVPENISDSGGSGIAVEEGPGIPADIPSPIMGL----- 282
+ + + + A + +PS G
Sbjct: 183 RSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKA 242
Query: 283 ------------------GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
G +V V + G GE+ G+ G FP ++V+ D
Sbjct: 243 IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ 297
Score = 59.6 bits (143), Expect = 2e-10
Identities = 16/116 (13%), Positives = 30/116 (25%), Gaps = 2/116 (1%)
Query: 114 MMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTARFRGVSEYRRYR 173
+ P G + + +
Sbjct: 184 SSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAI 243
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
+ + L+ + GDI+ V G GE+ G+ G FP ++V+ D
Sbjct: 244 QKRVPCAYDKTALALEVGDIVKVTRMN--INGQWEGEVNGRKGLFPFTHVKIFDPQ 297
Score = 40.0 bits (92), Expect = 6e-04
Identities = 12/105 (11%), Positives = 27/105 (25%), Gaps = 1/105 (0%)
Query: 57 KDHTIKAKEEGDLKDTQSSSDGSQDVFCSVHLQLSTKEKDLEVNNSNLDDLKKTLANMMS 116
+ + +S + Q +T + + + N
Sbjct: 179 EKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPV 238
Query: 117 DKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRT 160
I + + L +++ VT+ N W G + R
Sbjct: 239 FAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRK 283
Score = 38.1 bits (87), Expect = 0.003
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 283 GTVVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCDETGEVVPGTELPGDKHH 334
G ++ + + E W + + G+ G P YVE + + +
Sbjct: 147 GEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYG 199
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 75.3 bits (186), Expect = 7e-18
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
+ +A+Y++ ++ GDEL+F+ GD I+V K GW GEL G+ GW P +YV+
Sbjct: 5 QVKALYDYDAQTGDELTFKEGDTIIVHQKD--PAGWWEGELNGKRGWVPANYVQD 57
Score = 49.5 bits (119), Expect = 1e-08
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF 163
A Y YD+ +LTF + + I V +K WW G + +
Sbjct: 5 QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWV 50
Score = 45.2 bits (108), Expect = 6e-07
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
G + V Q GW GEL G+ GW P +YV+
Sbjct: 25 GDTIIVHQKDPAGWWEGELNGKRGWVPANYVQD 57
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 75.9 bits (187), Expect = 7e-18
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
S + AIY++ DELSFQ G II V +K+N + GW G + G TG FP +YVE
Sbjct: 15 SYLEKVVAIYDYTKDKEDELSFQEGAIIYV-IKKN-DDGWYEGVMNGVTGLFPGNYVESI 72
Query: 227 DE 228
Sbjct: 73 SG 74
Score = 52.4 bits (126), Expect = 2e-09
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF 163
+ +A Y Y + +L+F + +IYV KK ++ W+ G + T F
Sbjct: 18 EKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLF 64
Score = 45.8 bits (109), Expect = 5e-07
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
G ++ V + + GW G + G TG FP +YVE
Sbjct: 39 GAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISG 74
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 75.3 bits (186), Expect = 8e-18
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
+ +A+Y + +++ DELSF DII + +K++ GW G LRG+ G FP +YV
Sbjct: 6 PQCKALYAYDAQDTDELSFNANDIIDI-IKED-PSGWWTGRLRGKQGLFPNNYVTK 59
Score = 53.0 bits (128), Expect = 8e-10
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 115 MSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF 163
+ A Y YD+ + +L+FN +++I + K+ + WWTG + + F
Sbjct: 3 LGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLF 52
Score = 45.3 bits (108), Expect = 5e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
++ + + GW G LRG+ G FP +YV
Sbjct: 27 NDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 59
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 75.8 bits (187), Expect = 9e-18
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNA-EPGWLAGELRGQTGWFPESYV 223
G S +A+Y++ + DELSF G II + K+N + G+ GE G+ G FP V
Sbjct: 4 GSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 63
Query: 224 EPCDE 228
E
Sbjct: 64 EELSS 68
Score = 45.8 bits (109), Expect = 4e-07
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 284 TVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
++ + + G+ GE G+ G FP VE
Sbjct: 34 RILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSS 68
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 75.9 bits (187), Expect = 9e-18
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
+ RA+ ++ + L F+ DII + ++ E W G+L G+ G FP +VE
Sbjct: 11 KYARALKDYNVSDTSLLPFKRNDIITI-TFKDQENKWFMGQLNGKEGSFPVDHVEILLSD 69
Score = 45.4 bits (108), Expect = 6e-07
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 288 VKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
++ E W G+L G+ G FP +VE
Sbjct: 38 TFKDQENKWFMGQLNGKEGSFPVDHVEILLSD 69
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 81.2 bits (199), Expect = 1e-17
Identities = 42/226 (18%), Positives = 70/226 (30%), Gaps = 18/226 (7%)
Query: 108 KKTLANMMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTARFRGVS 167
+ + + I +DS P L F + + T +
Sbjct: 76 AQPPPGVSPSRLRIGDQEFDSL-PALLEFYKIHYLDTTTLIEPVSR--SRQGSGVILRQE 132
Query: 168 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
E RA+++F + ++L F+ GDI+ + K + W A + G+ G P YVE
Sbjct: 133 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPYVEKYR 191
Query: 228 ETGEVVPGTELPGDKHHLELIAEVPENISDSGGSGIAVEEGPGIPADIPSPIM------- 280
V + PE + S I
Sbjct: 192 PASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAY 251
Query: 281 -------GLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
+G +V V + G GE G+ G FP ++V D+
Sbjct: 252 DKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQ 297
Score = 74.6 bits (182), Expect = 2e-15
Identities = 31/247 (12%), Positives = 61/247 (24%), Gaps = 56/247 (22%)
Query: 36 HGAPLLLRILQNWAHQRLKITKDHTIKAKEEGDLKDTQSSSDGSQDVFCSVHLQLSTKEK 95
+ I + + + L+ D S +
Sbjct: 54 NSRVSHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFD-SLPALLEFYKIHYLDTT 112
Query: 96 DLEVNNSNLDDLKKTLANMMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTG 154
L S + +Y A + ++ + DL F + +++ + K E WW
Sbjct: 113 TLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNA 172
Query: 155 TIGD----------------------------------------------------RTAR 162
+
Sbjct: 173 EDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPN 232
Query: 163 FRGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 222
+ Y R + + L+ + G+++ V K N G GE G+ G FP ++
Sbjct: 233 LQNGPIYARVIQKRVPNAYDKTALALEVGELVKV-TKINVS-GQWEGECNGKRGHFPFTH 290
Query: 223 VEPCDET 229
V D+
Sbjct: 291 VRLLDQQ 297
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 75.0 bits (185), Expect = 1e-17
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
G S +Y + + + ELS Q G+++ V +++N E GW + GW P +Y+E
Sbjct: 4 GSSGLEQYVVVSNYKKQENSELSLQAGEVVDV-IEKN-ESGWWFVSTSEEQGWVPATYLE 61
Query: 225 PCDET 229
+
Sbjct: 62 AQNSG 66
Score = 50.4 bits (121), Expect = 9e-09
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRT 160
+ Y+ Y E +L+ EV+ V +K E+ WW + +
Sbjct: 9 EQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQ 52
Score = 45.7 bits (109), Expect = 4e-07
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
G VV V + E GW + GW P +Y+E +
Sbjct: 30 GEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSG 66
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 75.5 bits (186), Expect = 1e-17
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
+++ A+Y F + +L+FQ GD I V K ++ W G+LRGQTG FP +YV
Sbjct: 13 NLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVT 72
Query: 225 PCDE 228
Sbjct: 73 MNSG 76
Score = 55.5 bits (134), Expect = 2e-10
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 108 KKTLANMMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTARF 163
+ + N+ A Y ++ +PGDL F + I V K + DWW G + +T F
Sbjct: 8 HERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIF 66
Score = 43.1 bits (102), Expect = 4e-06
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 289 KQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
K ++ W G+LRGQTG FP +YV
Sbjct: 47 KTDSHFDWWEGKLRGQTGIFPANYVTMNSG 76
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 76.7 bits (188), Expect = 1e-17
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE---PGWLAG----------ELRGQTG 216
+ +A +++ + + DEL + GD+++V QN E GWL G EL G
Sbjct: 45 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRG 104
Query: 217 WFPESYVEPCD 227
FPE++ E
Sbjct: 105 VFPENFTERVQ 115
Score = 37.0 bits (85), Expect = 0.001
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 10/39 (25%)
Query: 289 KQNAEPGWLAG----------ELRGQTGWFPESYVEPCD 317
+ + GWL G EL G FPE++ E
Sbjct: 77 PEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ 115
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 75.0 bits (184), Expect = 2e-17
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMV-------------PVKQNAEPGWLAG--EL 211
E +YRA+Y F ++L PGD+++V + GW+ G E
Sbjct: 9 PEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNER 68
Query: 212 RGQTGWFPESYVE 224
Q G FP +YVE
Sbjct: 69 TRQRGDFPGTYVE 81
Score = 40.0 bits (93), Expect = 9e-05
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 287 PVKQNAEPGWLAG--ELRGQTGWFPESYVE 314
+ GW+ G E Q G FP +YVE
Sbjct: 52 GERCPQSVGWMPGLNERTRQRGDFPGTYVE 81
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 74.2 bits (183), Expect = 3e-17
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNA--EPGWLAGELRGQTGWFPESYVE 224
S RA+Y+ DEL+F GDI+ + ++Q+ GW L G+ G P + ++
Sbjct: 5 SSGLLARALYDNCPDCSDELAFSRGDILTI-LEQHVPESEGWWKCLLHGRQGLAPANRLQ 63
Query: 225 PCDE 228
Sbjct: 64 ILSG 67
Score = 43.4 bits (103), Expect = 3e-06
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 284 TVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
T++ GW L G+ G P + ++
Sbjct: 33 TILEQHVPESEGWWKCLLHGRQGLAPANRLQILSG 67
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 73.8 bits (182), Expect = 3e-17
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 228
Y A+Y+FV + ++L +PGDII + ++ + W G+++ + G+FP ++V+
Sbjct: 8 NTYVALYKFVPQENEDLEMRPGDIITL-LEDS-NEDWWKGKIQDRIGFFPANFVQRLSG 64
Score = 53.8 bits (130), Expect = 6e-10
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
S Y+A Y + E DL ++I + + N DWW G I DR F
Sbjct: 6 SGNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFF 54
Score = 43.8 bits (104), Expect = 2e-06
Identities = 7/36 (19%), Positives = 21/36 (58%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
G ++ + +++ W G+++ + G+FP ++V+
Sbjct: 29 GDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSG 64
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 73.8 bits (182), Expect = 4e-17
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
S + AI ++ + + +LSF G+ I+ + + W GE G G+ P ++V
Sbjct: 5 SSGEEFVAIADYAATDETQLSFLRGEKIL--ILRQTTADWWWGERAGCCGYIPANHVGKH 62
Query: 227 DE 228
Sbjct: 63 SG 64
Score = 54.2 bits (131), Expect = 5e-10
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRT 160
S + ++A Y +T+ L+F + E I + ++ DWW G
Sbjct: 6 SGEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCC 51
Score = 43.4 bits (103), Expect = 3e-06
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
G + + + W GE G G+ P ++V
Sbjct: 29 GEKILILRQTTADWWWGERAGCCGYIPANHVGKHSG 64
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 73.3 bits (181), Expect = 4e-17
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
A+Y+F + +L +PGD + + +++ P W G G+TG FP +YV+P
Sbjct: 3 EYVEALYQFDPQQDGDLGLKPGDKVQL-LEKL-SPEWYKGSCNGRTGIFPANYVKPA 57
Score = 56.8 bits (138), Expect = 3e-11
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
+Y A Y +D + GDL + + + +K + +W+ G+ RT F
Sbjct: 3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIF 49
Score = 45.6 bits (109), Expect = 4e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 316
G V + + P W G G+TG FP +YV+P
Sbjct: 24 GDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPA 57
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 73.8 bits (182), Expect = 4e-17
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
S RA+Y+F N EL F+ GDII + Q + W G L G +G+FP +YVE
Sbjct: 5 SSGPCCRALYDFEPENEGELGFKEGDIITL-TNQI-DENWYEGMLHGHSGFFPINYVEIL 62
Query: 227 DETGEVVP 234
P
Sbjct: 63 VALPHSGP 70
Score = 48.8 bits (117), Expect = 4e-08
Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
A Y ++ G+L F + ++I +T + + +W+ G + + F
Sbjct: 9 CCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFF 54
Score = 43.4 bits (103), Expect = 3e-06
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVP 324
G ++ + + W G L G +G+FP +YVE P
Sbjct: 29 GDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHSGP 70
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 74.8 bits (184), Expect = 4e-17
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
+ A+Y++ + N DELSF G +I V + ++ +P W GE+ G TG FP +YV+ ++
Sbjct: 35 CQVIAMYDYAANNEDELSFSKGQLINV-MNKD-DPDWWQGEINGVTGLFPSNYVKMTTDS 92
Query: 230 GE 231
Sbjct: 93 SG 94
Score = 52.8 bits (127), Expect = 2e-09
Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 27/113 (23%)
Query: 212 RGQTGWFPESYVEPCDETGEVVPGTELPGDKHHLELIAE---VPENISDSGGSGIAVEEG 268
GQ GWFP S+V+ + E P + +IA N + ++ +G
Sbjct: 6 SGQKGWFPASHVKLLGPSSERATPAFHPVCQ----VIAMYDYAANNEDE-----LSFSKG 56
Query: 269 PGIPADIPSPIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGE 321
+ + V +P W GE+ G TG FP +YV+ ++
Sbjct: 57 -----QL----------INVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSSG 94
Score = 52.4 bits (126), Expect = 4e-09
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 108 KKTLANMMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF 163
++ IA Y Y + +L+F++ ++I V K + DWW G I T F
Sbjct: 25 ERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLF 81
Score = 32.8 bits (75), Expect = 0.035
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 302 RGQTGWFPESYVEPCDETGEVVPGTELPGDK 332
GQ GWFP S+V+ + E P +
Sbjct: 6 SGQKGWFPASHVKLLGPSSERATPAFHPVCQ 36
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 73.9 bits (182), Expect = 4e-17
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
+ A+Y++ ++ E++ + GDI+ + + W E+ + G+ P +YV+
Sbjct: 3 TGKELVLALYDYQEKSPREVTMKKGDILTL--LNSTNKDWWKVEVNDRQGFVPAAYVKKL 60
Query: 227 D 227
D
Sbjct: 61 D 61
Score = 55.0 bits (133), Expect = 3e-10
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
+ +A Y Y P ++T + +++ + N DWW + DR
Sbjct: 6 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFV 52
Score = 45.8 bits (109), Expect = 5e-07
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 317
G ++ + + W E+ + G+ P +YV+ D
Sbjct: 27 GDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 61
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 73.3 bits (181), Expect = 4e-17
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
R RA+Y+F + DEL F+ G+++ V + + P W G L + G FP +YV P
Sbjct: 2 RWARALYDFEALEEDELGFRSGEVVEV-LDSS-NPSWWTGRLHNKLGLFPANYVAP 55
Score = 53.7 bits (130), Expect = 5e-10
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
++ A Y +++ E +L F EV+ V N WWTG + ++ F
Sbjct: 2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLF 48
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
G VV V ++ P W G L + G FP +YV P
Sbjct: 23 GEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 73.5 bits (181), Expect = 5e-17
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
E A +++V R ELSF+ G +++ Q A W G G G P Y+
Sbjct: 7 GEPIEAIAKFDYVGRTARELSFKKGASLLL--YQRASDDWWEGRHNGIDGLIPHQYIVVQ 64
Query: 227 DETG 230
D +G
Sbjct: 65 DTSG 68
Score = 50.8 bits (122), Expect = 8e-09
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
IA + Y +L+F + + + ++ + DWW G
Sbjct: 13 IAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLI 56
Score = 46.2 bits (110), Expect = 3e-07
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG 320
G + + Q A W G G G P Y+ D +G
Sbjct: 31 GASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTSG 68
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 73.5 bits (181), Expect = 5e-17
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQ---TGWFPESYV 223
++ RR + IY+ + N DEL+F G++I+V + + W G + GQ G FP S+V
Sbjct: 8 NKVRRVKTIYDCQADNDDELTFIEGEVIIV-TGEE-DQEWWIGHIEGQPERKGVFPVSFV 65
Query: 224 EPCDETG 230
++G
Sbjct: 66 HILSDSG 72
Score = 41.9 bits (99), Expect = 1e-05
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQ---TGWFPESYVEPCDETG 320
G V+ V + W G + GQ G FP S+V ++G
Sbjct: 32 GEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSDSG 72
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 73.5 bits (181), Expect = 6e-17
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
G S Y A+Y + S +L+F G+ I+V + W G + ++G FP +YV+
Sbjct: 4 GSSGGEEYIALYPYSSVEPGDLTFTEGEEILV---TQKDGEWWTGSIGDRSGIFPSNYVK 60
Query: 225 PCD 227
P D
Sbjct: 61 PKD 63
Score = 68.8 bits (169), Expect = 2e-15
Identities = 28/48 (58%), Positives = 35/48 (72%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTARF 163
+ YIA YPY S EPGDLTF + E I VT+K+ +WWTG+IGDR+ F
Sbjct: 7 GGEEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIF 54
Score = 42.3 bits (100), Expect = 8e-06
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 293 EPGWLAGELRGQTGWFPESYVEPCD 317
+ W G + ++G FP +YV+P D
Sbjct: 39 DGEWWTGSIGDRSGIFPSNYVKPKD 63
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 73.6 bits (181), Expect = 6e-17
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 170 RRYRAIYEFVSRNG-------DELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 222
RR A+Y++ R EL+F GDII V + E G+ GEL GQ G P ++
Sbjct: 8 RRMVALYDYDPRESSPNVDVEAELTFCTGDIITV-FGEIDEDGFYYGELNGQKGLVPSNF 66
Query: 223 VEPC 226
+E
Sbjct: 67 LEEV 70
Score = 44.7 bits (106), Expect = 1e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 288 VKQNAEPGWLAGELRGQTGWFPESYVEPC 316
+ E G+ GEL GQ G P +++E
Sbjct: 42 FGEIDEDGFYYGELNGQKGLVPSNFLEEV 70
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 74.0 bits (182), Expect = 6e-17
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
+ +++ DELS G ++V K GW G GQ GWFP +YV ++
Sbjct: 19 PAYVKFNYMAEREDELSLIKGTKVIVMEKC--SDGWWRGSYNGQVGWFPSNYVTEEGDS 75
Score = 49.4 bits (118), Expect = 4e-08
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTARF 163
+ + Y + +L+ + + V +K +D WW G+ + F
Sbjct: 16 LNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWF 64
Score = 45.5 bits (108), Expect = 9e-07
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
GT V V + GW G GQ GWFP +YV ++
Sbjct: 39 GTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDS 75
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 73.0 bits (180), Expect = 6e-17
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCD 227
+ +RAI+ FV R+ DEL + D ++V ++ AE W G G FP Y
Sbjct: 4 QTHRAIFRFVPRHEDELELEVDDPLLVELQ--AEDYWYEAYNMRTGARGVFPAYYAIEVT 61
Query: 228 E 228
+
Sbjct: 62 K 62
Score = 41.0 bits (97), Expect = 2e-05
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 283 GTVVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCDE 318
+ V+ AE W G G FP Y +
Sbjct: 25 DDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK 62
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 73.6 bits (181), Expect = 7e-17
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 166 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMV--PVKQNAEPGWLAGELRGQTGWFPESYV 223
+ Y A+Y F +RN +ELS + + W E+ G+ G+ P +Y+
Sbjct: 10 AEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYI 69
Query: 224 EPCD 227
+
Sbjct: 70 RKTE 73
Score = 42.4 bits (100), Expect = 9e-06
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 290 QNAEPGWLAGELRGQTGWFPESYVEPCD 317
W E+ G+ G+ P +Y+ +
Sbjct: 46 VTGNTEWWLAEVNGKKGYVPSNYIRKTE 73
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 73.5 bits (181), Expect = 7e-17
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
R A+++F + EL+F+ GD+I + + + WL G +RG TG FP S+V+
Sbjct: 16 MAAPRAEALFDFTGNSKLELNFKAGDVIFL-LSRI-NKDWLEGTVRGATGIFPLSFVKIL 73
Query: 227 DETGE 231
+ E
Sbjct: 74 KDFPE 78
Score = 53.1 bits (128), Expect = 2e-09
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRT 160
A + + +L F +VI++ + N DW GT+ T
Sbjct: 22 EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGAT 62
Score = 45.0 bits (107), Expect = 1e-06
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGE 321
G V+ + WL G +RG TG FP S+V+ + E
Sbjct: 40 GDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPE 78
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 72.6 bits (179), Expect = 8e-17
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEP 225
++ R RA+Y++ + DELSF+ GD + + + E GW G L GQ G +P +YVE
Sbjct: 1 AKGVRVRALYDYDGQEQDELSFKAGDELTK-LGEEDEQGWCRGRLDSGQLGLYPANYVEA 59
Score = 38.7 bits (91), Expect = 1e-04
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 288 VKQNAEPGWLAGEL-RGQTGWFPESYVEP 315
+ + E GW G L GQ G +P +YVE
Sbjct: 31 LGEEDEQGWCRGRLDSGQLGLYPANYVEA 59
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 73.1 bits (180), Expect = 9e-17
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
E + +A+ + ++ + L+F DII V +Q W GE+ G GWFP+SYV+
Sbjct: 8 VENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQE---NWWFGEVHGGRGWFPKSYVKII 64
Query: 227 DET 229
+
Sbjct: 65 PGS 67
Score = 52.7 bits (127), Expect = 2e-09
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTARF 163
A + + + L F++ ++I V +++ +WW G + F
Sbjct: 12 KAQALCSWTAKKDNHLNFSKHDIITVLEQQENWWFGEVHGGRGWF 56
Score = 41.2 bits (97), Expect = 2e-05
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 293 EPGWLAGELRGQTGWFPESYVEPCDET 319
+ W GE+ G GWFP+SYV+ +
Sbjct: 41 QENWWFGEVHGGRGWFPKSYVKIIPGS 67
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 72.6 bits (179), Expect = 9e-17
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
+ +Y++ ++ EL+ + GDI+ + + W E+ G+ G+ P +Y++
Sbjct: 4 TGKELVLVLYDYQEKSPRELTVKKGDILTL--LNSTNKDWWKIEVNGRQGFVPAAYLKKL 61
Query: 227 D 227
D
Sbjct: 62 D 62
Score = 53.4 bits (129), Expect = 8e-10
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
+ + Y Y P +LT + +++ + N DWW + R
Sbjct: 7 ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFV 53
Score = 44.9 bits (107), Expect = 6e-07
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 317
G ++ + + W E+ G+ G+ P +Y++ D
Sbjct: 28 GDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKLD 62
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 72.3 bits (178), Expect = 1e-16
Identities = 22/64 (34%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 166 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYV 223
++ R YRA+Y++ +++ DE+SF+ GD I+ V+ + GW+ G ++ G+TG P +Y+
Sbjct: 3 MANLRTYRAMYDYSAQDEDEVSFRDGDYIVN-VQPI-DDGWMYGTVQRTGRTGMLPANYI 60
Query: 224 EPCD 227
E +
Sbjct: 61 EFVN 64
Score = 45.7 bits (109), Expect = 4e-07
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 112 ANMMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI 156
M + + Y A Y Y + + +++F + I + ++ W GT+
Sbjct: 1 GAMANLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTV 46
Score = 39.1 bits (92), Expect = 7e-05
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 283 GTVVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCD 317
G + Q + GW+ G ++ G+TG P +Y+E +
Sbjct: 28 GDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFVN 64
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 72.2 bits (178), Expect = 1e-16
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
+A+++F + EL F+ GD I V + + +P W G GQTG FP +YV +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHV-MDNS-DPNWWKGACHGQTGMFPRNYVTAVN 58
Score = 55.3 bits (134), Expect = 1e-10
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
Y A + +D E G+L F + + I+V + +WW G +T F
Sbjct: 3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMF 49
Score = 44.1 bits (105), Expect = 1e-06
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 317
G + V N++P W G GQTG FP +YV +
Sbjct: 24 GDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAVN 58
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 72.2 bits (178), Expect = 1e-16
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
+ A+Y F +L F+ GD+I + K +++ W G + G+ G FP +YVE
Sbjct: 5 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 59
Score = 54.9 bits (133), Expect = 2e-10
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTARF 163
S +A Y + E GDL F + +VI + KK +NDWWTG + R F
Sbjct: 2 SSPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIF 52
Score = 39.5 bits (93), Expect = 5e-05
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 289 KQNAEPGWLAGELRGQTGWFPESYVEP 315
K +++ W G + G+ G FP +YVE
Sbjct: 33 KSDSQNDWWTGRVNGREGIFPANYVEL 59
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 72.8 bits (179), Expect = 1e-16
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
A + + R ELSF+ GD++ + + A W GE G G P Y+
Sbjct: 8 EGVVEAVACFAYTGRTAQELSFRRGDVLRL--HERASSDWWRGEHNGMRGLIPHKYITLP 65
Query: 227 DETGEVVPG 235
T + V G
Sbjct: 66 AGTEKQVVG 74
Score = 51.2 bits (123), Expect = 6e-09
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF 163
+A + Y +L+F + +V+ + ++ +DWW G
Sbjct: 14 VACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLI 57
Score = 44.6 bits (106), Expect = 1e-06
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPG 325
G V+ + + A W GE G G P Y+ T + V G
Sbjct: 32 GDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTEKQVVG 74
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 72.2 bits (178), Expect = 1e-16
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
RR RA+Y+F + +EL+F+ G++I V + + + W GE TG FP ++V
Sbjct: 6 RRVRALYDFEAVEDNELTFKHGELITV-LDDS-DANWWQGENHRGTGLFPSNFVT 58
Score = 52.2 bits (126), Expect = 2e-09
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
+ A Y +++ E +LTF E+I V + +WW G T F
Sbjct: 6 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLF 52
Score = 41.4 bits (98), Expect = 1e-05
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G ++ V +++ W GE TG FP ++V
Sbjct: 27 GELITVLDDSDANWWQGENHRGTGLFPSNFVT 58
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 72.3 bits (178), Expect = 1e-16
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
R +Y+F N EL F+ GDII + Q + W G + G++G+FP +YVE
Sbjct: 7 RGLYDFEPENQGELGFKEGDIITL-TNQI-DENWYEGMIHGESGFFPINYVEV 57
Score = 50.3 bits (121), Expect = 1e-08
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF 163
Y ++ G+L F + ++I +T + + +W+ G I + F
Sbjct: 7 RGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFF 50
Score = 43.4 bits (103), Expect = 2e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
G ++ + + W G + G++G+FP +YVE
Sbjct: 25 GDIITLTNQIDENWYEGMIHGESGFFPINYVEV 57
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 72.2 bits (178), Expect = 1e-16
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVE 224
S + A++ + + +EL Q G+ I V + GWL G L G+TG FP YV
Sbjct: 5 SSGNMFVALHTYSAHRPEELDLQKGEGIR--VLGKYQDGWLKGLSLLTGRTGIFPSDYVI 62
Query: 225 PCDE 228
P
Sbjct: 63 PVSG 66
Score = 41.4 bits (98), Expect = 2e-05
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 283 GTVVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCDE 318
G + V + GWL G L G+TG FP YV P
Sbjct: 29 GEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSG 66
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 72.9 bits (179), Expect = 2e-16
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 154 GTIGDRTARFR-GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVK--QNAEPGWLAGE 210
G+ G + G ++ RA Y+FV+ + +E+SF+ GD++ + +K Q GWL
Sbjct: 1 GSSGSSGTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLAS 60
Query: 211 LRGQ-TGWFPESYVE 224
L GQ TG P +YV+
Sbjct: 61 LDGQTTGLIPANYVK 75
Score = 37.9 bits (88), Expect = 5e-04
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 290 QNAEPGWLAGELRGQ-TGWFPESYVE 314
Q GWL L GQ TG P +YV+
Sbjct: 50 QPKVRGWLLASLDGQTTGLIPANYVK 75
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 72.3 bits (178), Expect = 2e-16
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
+A+Y+F N EL F+ GD+I + Q + W G L GQ+G+FP SYV+
Sbjct: 14 PSCKALYDFEPENDGELGFREGDLITL-TNQI-DENWYEGMLHGQSGFFPLSYVQ 66
Score = 49.6 bits (119), Expect = 2e-08
Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
A Y ++ G+L F + ++I +T + + +W+ G + ++ F
Sbjct: 17 KALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFF 60
Score = 43.8 bits (104), Expect = 2e-06
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G ++ + + W G L GQ+G+FP SYV+
Sbjct: 35 GDLITLTNQIDENWYEGMLHGQSGFFPLSYVQ 66
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 71.9 bits (177), Expect = 2e-16
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVE 224
S YRA+Y++ +N DEL + GD + V Q + GW G R + G FP +YV
Sbjct: 5 SSGTPYRAMYQYRPQNEDELELREGDRVD--VMQQCDDGWFVGVSRRTQKFGTFPGNYVA 62
Query: 225 P 225
P
Sbjct: 63 P 63
Score = 40.3 bits (95), Expect = 3e-05
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 283 GTVVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 315
G V V Q + GW G R + G FP +YV P
Sbjct: 29 GDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 72.0 bits (177), Expect = 2e-16
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
A+++ V+ EL+F+ GD+I V N W G++ + GWFP S+V
Sbjct: 11 VSAEAVWDHVTMANRELAFKAGDVIKVLDASN--KDWWWGQIDDEEGWFPASFVRLWVNQ 68
Query: 230 GEVVPGTELP 239
+ V P
Sbjct: 69 EDEVEEGSGP 78
Score = 51.6 bits (124), Expect = 5e-09
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
A + + + +L F +VI V N DWW G I D F
Sbjct: 12 SAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWF 57
Score = 45.5 bits (108), Expect = 8e-07
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPGTELP 329
G V+ V + W G++ + GWFP S+V + V P
Sbjct: 32 GDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDEVEEGSGP 78
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 72.5 bits (178), Expect = 2e-16
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
R+ RA+Y+F + +EL+F+ G+II+V + + + W GE G FP ++V
Sbjct: 18 RKVRALYDFEAVEDNELTFKHGEIIIV-LDDS-DANWWKGENHRGIGLFPSNFVTTNLNI 75
Query: 230 GEVVPGTELP 239
P
Sbjct: 76 ETEAAAVSGP 85
Score = 48.6 bits (116), Expect = 6e-08
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
A Y +++ E +LTF E+I V + +WW G F
Sbjct: 21 RALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLF 64
Score = 44.0 bits (104), Expect = 3e-06
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPGTELP 329
G ++ V +++ W GE G FP ++V P
Sbjct: 39 GEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETEAAAVSGP 85
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 71.4 bits (176), Expect = 2e-16
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVE 224
+R A+Y+F N +EL GDI+ + ++ GWL E +TG PE +V
Sbjct: 2 QRAVALYDFEPENDNELRLAEGDIVFI-SYKH-GQGWLVAENESGSKTGLVPEEFVS 56
Score = 41.0 bits (97), Expect = 2e-05
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 283 GTVVPVKQNAEPGWLAGEL--RGQTGWFPESYVE 314
G +V + GWL E +TG PE +V
Sbjct: 23 GDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 56
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 71.5 bits (176), Expect = 2e-16
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
+ A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P +
Sbjct: 8 FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSAYITPVN 62
Score = 41.0 bits (97), Expect = 1e-05
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 288 VKQNAEPGWLAGELRGQTGWFPESYVEPCD 317
+ N W + + GW P +Y+ P +
Sbjct: 33 LGYNHNGEWCEAQTKNGQGWVPSAYITPVN 62
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 71.7 bits (176), Expect = 3e-16
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG 230
A+Y++ ++ E++ + GDI+ + + W E+ + G+ P +YV+ D
Sbjct: 4 LVLALYDYQEKSPREVTMKKGDILTL--LNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQ 61
Query: 231 EVVPGTE 237
Sbjct: 62 SASRENL 68
Score = 53.2 bits (128), Expect = 1e-09
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
+ +A Y Y P ++T + +++ + N DWW + DR
Sbjct: 3 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFV 49
Score = 44.7 bits (106), Expect = 1e-06
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPGTE 327
G ++ + + W E+ + G+ P +YV+ D
Sbjct: 24 GDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSASRENL 68
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 71.8 bits (176), Expect = 3e-16
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
G S Y + E+SF G + V +++ E GW GW P Y+
Sbjct: 4 GSSGATSYMTCSAYQKVQDSEISFPAGVEVQV-LEKQ-ESGWWYVRFGELEGWAPSHYLV 61
Query: 225 PCDE 228
+
Sbjct: 62 LDEN 65
Score = 48.6 bits (116), Expect = 5e-08
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRT 160
Y+ Y + +++F + V +K E+ WW G+
Sbjct: 7 GATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELE 52
Score = 44.0 bits (104), Expect = 3e-06
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
G V V + E GW GW P Y+ +
Sbjct: 30 GVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDEN 65
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 71.1 bits (175), Expect = 3e-16
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
S Y A+ +F ++ +L+F+ G+I++V +++ + W+A + +G G P +Y+EP
Sbjct: 8 STGEEYIAVGDFTAQQVGDLTFKKGEILLV-IEKKPDGWWIAKDAKGNEGLVPRTYLEPY 66
Query: 227 DE 228
E
Sbjct: 67 SE 68
Score = 41.1 bits (97), Expect = 2e-05
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 283 GTVVPVKQNAEPGW-LAGELRGQTGWFPESYVEPCDE 318
G ++ V + GW +A + +G G P +Y+EP E
Sbjct: 32 GEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYSE 68
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 71.2 bits (175), Expect = 4e-16
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
E R+ RAIY+F + +EL+F+ G+II V + + +P W GE G FP ++V
Sbjct: 15 HEARKVRAIYDFEAAEDNELTFKAGEIITV-LDDS-DPNWWKGETHQGIGLFPSNFVT 70
Score = 51.2 bits (123), Expect = 5e-09
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 102 SNLDDLKKTLANMMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRT 160
+ + + + A Y +++ E +LTF E+I V + +WW G
Sbjct: 2 GHHHHHHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGI 61
Query: 161 ARF 163
F
Sbjct: 62 GLF 64
Score = 40.8 bits (96), Expect = 3e-05
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G ++ V +++P W GE G FP ++V
Sbjct: 39 GEIITVLDDSDPNWWKGETHQGIGLFPSNFVT 70
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 71.2 bits (175), Expect = 4e-16
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESY 222
G + +RAI+ FV R+ DEL + D ++V ++ AE W G G FP Y
Sbjct: 2 GEEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQ--AEDYWYEAYNMRTGARGVFPAYY 59
Query: 223 VEPCDETGE 231
+ E
Sbjct: 60 AIEVTKEPE 68
Score = 38.0 bits (89), Expect = 2e-04
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 283 GTVVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCDETGE 321
+ V+ AE W G G FP Y + E
Sbjct: 28 DDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKEPE 68
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 70.8 bits (174), Expect = 4e-16
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQ-TGWFPESYVEP 225
S R +A+Y++ ++ DEL+F G +I K+ GW G+ + +FP +YVE
Sbjct: 5 SSGRTVKALYDYKAKRSDELTFCRGALIHNVSKE--PGGWWKGDYGTRIQQYFPSNYVED 62
Query: 226 CDE 228
Sbjct: 63 ISG 65
Score = 48.4 bits (116), Expect = 4e-08
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDR 159
S + A Y Y + +LTF + +I+ KE WW G G R
Sbjct: 6 SGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTR 50
Score = 38.8 bits (91), Expect = 1e-04
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQ-TGWFPESYVEPCDE 318
G ++ GW G+ + +FP +YVE
Sbjct: 29 GALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISG 65
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 70.8 bits (174), Expect = 5e-16
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCD 227
+R A+Y+F N +EL GDI+ + ++ GWL E +TG PE +V
Sbjct: 6 QRAVALYDFEPENDNELRLAEGDIVFI-SYKH-GQGWLVAENESGSKTGLVPEEFVSYIQ 63
Query: 228 ETGE 231
E
Sbjct: 64 PELE 67
Score = 40.8 bits (96), Expect = 3e-05
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 283 GTVVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCDETGE 321
G +V + GWL E +TG PE +V E
Sbjct: 27 GDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPELE 67
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 70.5 bits (173), Expect = 6e-16
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 164 RGVSEYRRYRAIYEFVSRNG-------DELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG 216
S + A ++ +G L+ + GD++MV + G+ GEL G G
Sbjct: 2 SSGSSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMV-YGPMDDQGFYYGELGGHRG 60
Query: 217 WFPESYVEPCDETG 230
P ++ G
Sbjct: 61 LVPAHLLDHMSLHG 74
Score = 43.5 bits (103), Expect = 3e-06
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 293 EPGWLAGELRGQTGWFPESYVEPCDETG 320
+ G+ GEL G G P ++ G
Sbjct: 47 DQGFYYGELGGHRGLVPAHLLDHMSLHG 74
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 70.9 bits (174), Expect = 7e-16
Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
+ A+Y++ ++ E++ + GDI+ + + W E+ + G+ P +YV+
Sbjct: 15 TGKELVLALYDYQEKSPREVTMKKGDILT--LLNSTNKDWWKVEVNDRQGFVPAAYVKKL 72
Query: 227 DE 228
Sbjct: 73 AA 74
Score = 53.6 bits (129), Expect = 1e-09
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
+ +A Y Y P ++T + +++ + N DWW + DR
Sbjct: 16 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFV 64
Score = 42.8 bits (101), Expect = 7e-06
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
G ++ + + W E+ + G+ P +YV+
Sbjct: 39 GDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAA 74
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 70.5 bits (173), Expect = 7e-16
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
A+Y++ + DE+SF P DII ++ + GW G +G+ G FP +YVE
Sbjct: 15 DLGITAVALYDYQAAGDDEISFDPDDIITN-IEMI-DDGWWRGVCKGRYGLFPANYVE 70
Score = 46.6 bits (111), Expect = 3e-07
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
+A Y Y + +++F+ D++I + + WW G R F
Sbjct: 20 AVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLF 64
Score = 41.6 bits (98), Expect = 1e-05
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
++ + + GW G +G+ G FP +YVE
Sbjct: 39 DDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 70
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 70.0 bits (172), Expect = 8e-16
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
A+Y++ + DE+SF P DII ++ + GW G +G+ G FP +YVE
Sbjct: 10 ITAIALYDYQAAGDDEISFDPDDIITN-IEMI-DDGWWRGVCKGRYGLFPANYVE 62
Score = 48.4 bits (116), Expect = 5e-08
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
IA Y Y + +++F+ D++I + + WW G R F
Sbjct: 12 AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLF 56
Score = 41.1 bits (97), Expect = 2e-05
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
++ + + GW G +G+ G FP +YVE
Sbjct: 31 DDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 62
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 70.1 bits (172), Expect = 1e-15
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 225
+ F ++ DE++ Q D+++V + E GWL GE G+TGWFPE +
Sbjct: 19 QVEITKAFFAKQADEVTLQQADVVLVLQQ---EDGWLYGERLRDGETGWFPEDFARF 72
Score = 39.3 bits (92), Expect = 1e-04
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 283 GTVVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 315
VV V Q E GWL GE G+TGWFPE +
Sbjct: 39 ADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARF 72
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 69.5 bits (171), Expect = 1e-15
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
A +++V R+ ELSF+ G +++ A W G G G P Y+
Sbjct: 10 IAKFDYVGRSARELSFKKGASLLL--YHRASEDWWEGRHNGIDGLVPHQYIV 59
Score = 53.4 bits (129), Expect = 8e-10
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF 163
++ IA + Y +L+F + + + + DWW G
Sbjct: 7 EFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLV 53
Score = 42.2 bits (100), Expect = 5e-06
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
G + + A W G G G P Y+
Sbjct: 28 GASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 70.2 bits (172), Expect = 1e-15
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 169 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 228
+ + + + L+ + GDI+ V + N G GE+ G+ G FP ++V+ D
Sbjct: 18 FAKAIQKRVPCAYDKTALALEVGDIVKV-TRMN-INGQWEGEVNGRKGLFPFTHVKIFDP 75
Score = 46.3 bits (110), Expect = 4e-07
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
G +V V + G GE+ G+ G FP ++V+ D
Sbjct: 40 GDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDP 75
Score = 45.9 bits (109), Expect = 7e-07
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF 163
I + + L +++ VT+ N W G + R F
Sbjct: 22 IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLF 65
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 69.7 bits (171), Expect = 1e-15
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 168 EYRRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVE 224
+ ++ A Y+F S + EL + GDI+ + ++ GW +L + GW P +Y+
Sbjct: 1 KDPKFEAAYDFPGSGSSSELPLKKGDIVFI--SRDEPSGWSLAKLLDGSKEGWVPTAYMT 58
Query: 225 PCDETGEVVP 234
P +T VP
Sbjct: 59 PYKDTRNTVP 68
Score = 45.8 bits (109), Expect = 5e-07
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 283 GTVVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCDETGEVVP 324
G +V + ++ GW +L + GW P +Y+ P +T VP
Sbjct: 25 GDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVP 68
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 69.2 bits (170), Expect = 2e-15
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
S + + +Y+F +RN +ELS +++ V ++ W GQ G+ P + +
Sbjct: 5 SSGKYVKILYDFTARNANELSVLKDEVLE--VLEDGRQWWKLRSRSGQAGYVPCNILGE 61
Score = 49.9 bits (120), Expect = 1e-08
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW 152
S KY Y + + +L+ +DEV+ V + WW
Sbjct: 6 SGKYVKILYDFTARNANELSVLKDEVLEVLEDGRQWW 42
Score = 40.7 bits (96), Expect = 3e-05
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
V+ V ++ W GQ G+ P + +
Sbjct: 29 DEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGE 61
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 68.5 bits (168), Expect = 3e-15
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNA-EPGWLAGELRGQTGWFPESYVEPCDETGE 231
+A+Y+ V+ + DELSF+ GDI+ V + GW L G+ G P + ++ +
Sbjct: 7 KALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYD 66
Query: 232 VVP 234
P
Sbjct: 67 KKP 69
Score = 49.6 bits (119), Expect = 2e-08
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTIGDRTARF 163
A Y + P +L+F + +++ V ++ + WW ++ R
Sbjct: 7 KALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIV 53
Score = 40.4 bits (95), Expect = 3e-05
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 284 TVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVP 324
TV+ GW L G+ G P + ++ + P
Sbjct: 29 TVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYDKKP 69
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 69.2 bits (169), Expect = 4e-15
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 160 TARFRGVSEYRRYRAIYEFVSRNG------DELSFQPGDIIMVPVKQNAEPGWLAGE-LR 212
T++ R + A Y + +G EL G + V E G+ GE L
Sbjct: 8 TSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYV-YGDMDEDGFYEGELLD 66
Query: 213 GQTGWFPESYVEPCDETGEVVPGTELP 239
GQ G P ++V+ + + T P
Sbjct: 67 GQRGLVPSNFVDFVQDNESRLASTSGP 93
Score = 42.6 bits (100), Expect = 1e-05
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 288 VKQNAEPGWLAGE-LRGQTGWFPESYVEPCDETGEVVPGTELP 329
E G+ GE L GQ G P ++V+ + + T P
Sbjct: 51 YGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNESRLASTSGP 93
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 68.1 bits (167), Expect = 4e-15
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 173 RAIYEFV--SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
+AI + V + + L+ + GDI+ V + N G GE+ G+ G FP ++V+ D
Sbjct: 5 KAIQKRVPCAYDKTALALEVGDIVKV-TRMN-INGQWEGEVNGRKGLFPFTHVKIFDPQ 61
Score = 45.8 bits (109), Expect = 5e-07
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
G +V V + G GE+ G+ G FP ++V+ D
Sbjct: 25 GDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ 61
Score = 43.1 bits (102), Expect = 3e-06
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF 163
I + + L +++ VT+ N W G + R F
Sbjct: 7 IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLF 50
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 68.2 bits (167), Expect = 4e-15
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
G R + + D L + GDII + + + G G L + G F YV+
Sbjct: 7 GFCGRARVHTDFTPSPYDTDSLKLKKGDIIDI-ISKP-PMGTWMGLLNNKVGTFKFIYVD 64
Query: 225 PCDE 228
Sbjct: 65 VLSS 68
Score = 44.3 bits (105), Expect = 2e-06
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
G ++ + G G L + G F YV+
Sbjct: 33 GDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSS 68
Score = 43.9 bits (104), Expect = 2e-06
Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF 163
+ + L + ++I + K W G + ++ F
Sbjct: 15 HTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTF 58
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 68.6 bits (167), Expect = 4e-15
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVP-------------VKQNAEPGWLAG--EL 211
+E +YRA+Y++ +++ GDI+ V + E GWL G E
Sbjct: 3 AEGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNET 62
Query: 212 RGQTGWFPESYVEP 225
G+ G FP +YVE
Sbjct: 63 TGERGDFPGTYVEY 76
Score = 38.1 bits (88), Expect = 3e-04
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 10/69 (14%)
Query: 249 AEVPENISDSGGSGIAVEEGPGIPADIPSPIMGLGTVVPVKQNAEPGWLAG--ELRGQTG 306
E E+I G + V +G + + E GWL G E G+ G
Sbjct: 16 KEREEDIDLHLGDILTVNKGSLVALGFSDGQ--------EARPEEIGWLNGYNETTGERG 67
Query: 307 WFPESYVEP 315
FP +YVE
Sbjct: 68 DFPGTYVEY 76
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 67.6 bits (166), Expect = 7e-15
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 228
RA+++F + ++L F+ GDI+ + + E W A + G+ G P YVE
Sbjct: 4 EYVRALFDFNGNDEEDLPFKKGDILRI-RDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH 61
Score = 48.8 bits (117), Expect = 3e-08
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTG 154
S +Y A + ++ + DL F + +++ + K WW
Sbjct: 2 SAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNA 41
Score = 37.6 bits (88), Expect = 3e-04
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 283 GTVVPVKQNAEPGWLAGE-LRGQTGWFPESYVEPCDE 318
G ++ ++ E W E G+ G P YVE
Sbjct: 25 GDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH 61
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 68.3 bits (167), Expect = 8e-15
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMV---PVKQNAEPGWLAGEL-RGQTGWFPESYVEP 225
+ A++++ + +EL+ + GD + V + + GW G+L G+ G FP +YV P
Sbjct: 31 VWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP 89
Score = 38.7 bits (90), Expect = 3e-04
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 289 KQNAEPGWLAGEL-RGQTGWFPESYVEP 315
+ + GW G+L G+ G FP +YV P
Sbjct: 62 AVSGDEGWWTGQLPSGRVGVFPSNYVAP 89
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 67.3 bits (165), Expect = 8e-15
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 170 RRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPC 226
RR RAI + + DE+SF GD+ +V E GW+ + G E VE
Sbjct: 8 RRVRAILPYTKVPDTDEISFLKGDMFIV--HNELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
Query: 227 DE 228
Sbjct: 66 SG 67
Score = 38.4 bits (90), Expect = 2e-04
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 283 GTVVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCDE 318
G + V E GW+ + G E VE
Sbjct: 30 GDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG 67
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 66.9 bits (164), Expect = 9e-15
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG-WFPESYVEP 225
+A++++ ++ DEL+F II V++ + GW G+ G+ WFP +YVE
Sbjct: 7 KALFDYKAQREDELTFTKSAIIQN-VEKQ-DGGWWRGDYGGKKQLWFPSNYVEE 58
Score = 50.7 bits (122), Expect = 7e-09
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRT 160
A + Y + +LTF + +I +K++ WW G G +
Sbjct: 7 KALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKK 47
Score = 36.4 bits (85), Expect = 6e-04
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTG-WFPESYVEP 315
++ + + GW G+ G+ WFP +YVE
Sbjct: 25 SAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEE 58
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 67.3 bits (165), Expect = 1e-14
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG-WFPESYVEPCDETGE 231
+A++++ ++ DEL+F II KQ E GW G+ G+ WFP +YVE
Sbjct: 10 KALFDYKAQREDELTFIKSAIIQNVEKQ--EGGWWRGDYGGKKQLWFPSNYVEEMVNPEG 67
Query: 232 V 232
+
Sbjct: 68 I 68
Score = 49.6 bits (119), Expect = 2e-08
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRT 160
A + Y + +LTF + +I +K+ WW G G +
Sbjct: 10 KALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKK 50
Score = 38.4 bits (90), Expect = 2e-04
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTG-WFPESYVEPCDETGEV 322
++ + E GW G+ G+ WFP +YVE +
Sbjct: 28 SAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPEGI 68
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 67.0 bits (164), Expect = 1e-14
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 166 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVE 224
V A+Y++ + DEL+ GDII V K W G + +GQ G+FP ++V
Sbjct: 3 VDTAPTVVALYDYTANRSDELTIHRGDIIRVFFKD--NEDWWYGSIGKGQEGYFPANHVA 60
Query: 225 PCDETGEV 232
E+
Sbjct: 61 SETLYQEL 68
Score = 48.1 bits (115), Expect = 6e-08
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD 158
+ +A Y Y + +LT ++ ++I V K DWW G+IG
Sbjct: 5 TAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGK 48
Score = 38.5 bits (90), Expect = 2e-04
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 283 GTVVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDETGEV 322
G ++ V W G + +GQ G+FP ++V E+
Sbjct: 28 GDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETLYQEL 68
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 66.4 bits (163), Expect = 1e-14
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
RA+++F + ++L F+ GDI+ + + E W A + G+ G P YVE
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRI-RDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
Score = 49.8 bits (120), Expect = 1e-08
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTG 154
+Y A + ++ + DL F + +++ + K E WW
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNA 39
Score = 37.5 bits (88), Expect = 3e-04
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 283 GTVVPVKQNAEPGWLAGE-LRGQTGWFPESYVEP 315
G ++ ++ E W E G+ G P YVE
Sbjct: 23 GDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 67.0 bits (164), Expect = 1e-14
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 173 RAIYEFVS--RNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 228
R I + V + L+ + G+++ V K N G GE G+ G FP ++V D+
Sbjct: 10 RVIQKRVPNAYDKTALALEVGELVKV-TKIN-VSGQWEGECNGKRGHFPFTHVRLLDQ 65
Score = 45.0 bits (107), Expect = 9e-07
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
G +V V + G GE G+ G FP ++V D+
Sbjct: 30 GELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQ 65
Score = 42.3 bits (100), Expect = 6e-06
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARF 163
I ++ + L E++ VTK + W G + F
Sbjct: 12 IQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHF 55
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 66.9 bits (164), Expect = 1e-14
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
S + + +YEF +RN EL+ G+ + V +++ WL G++G+ P + +EP
Sbjct: 5 SSGLKMQVLYEFEARNPRELTVVQGEKLE--VLDHSKRWWLVKNEAGRSGYIPSNILEPL 62
Query: 227 D 227
Sbjct: 63 S 63
Score = 48.0 bits (115), Expect = 6e-08
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW 152
S Y +++ P +LT Q E + V WW
Sbjct: 6 SGLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWW 42
Score = 39.9 bits (94), Expect = 4e-05
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 317
G + V +++ WL G++G+ P + +EP
Sbjct: 29 GEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLS 63
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 66.3 bits (162), Expect = 3e-14
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG-----QTGWFPES 221
S + +V+ ++LS PG +I++ K GW GEL+ Q GWFP S
Sbjct: 5 SSGEIAQVTSAYVASGSEQLSLAPGQLILILKKN--TSGWWQGELQARGKKRQKGWFPAS 62
Query: 222 YVEPCDETGE 231
+V+ + E
Sbjct: 63 HVKLLGPSSE 72
Score = 38.6 bits (90), Expect = 2e-04
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 283 GTVVPVKQNAEPGWLAGELRG-----QTGWFPESYVEPCDETGE 321
G ++ + + GW GEL+ Q GWFP S+V+ + E
Sbjct: 29 GQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSSE 72
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 65.9 bits (161), Expect = 3e-14
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 170 RRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPC 226
RR RAI + + DE+SF GD+ + V E GW+ + G E VE
Sbjct: 6 RRVRAILPYTKVPDTDEISFLKGDMFI--VHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 63
Score = 37.8 bits (88), Expect = 3e-04
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 283 GTVVPVKQNAEPGWLAGELR--GQTGWFPESYVEPC 316
G + V E GW+ + G E VE
Sbjct: 28 GDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 63
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 65.6 bits (161), Expect = 3e-14
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLA--GELRGQTGWFPESYVE 224
+ +Y +V ++ DE++ PGD I + V ++ GW + G+TG P +Y+
Sbjct: 3 ENKVLYAYVQKDDDEITITPGDKISL-VARDTGSGWTKINNDTTGETGLVPTTYIR 57
Score = 34.1 bits (79), Expect = 0.005
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 284 TVVPVKQNAEPGWLA--GELRGQTGWFPESYVE 314
+ V ++ GW + G+TG P +Y+
Sbjct: 25 KISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 65.7 bits (161), Expect = 3e-14
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG--QTGWFPESYVE 224
S A + F E+SF+ G+ I + + + W G + G + G FP +YV+
Sbjct: 5 SSGGEAIAKFNFNGDTQVEMSFRKGERIT--LLRQVDENWYEGRIPGTSRQGIFPITYVD 62
Query: 225 PCDE 228
Sbjct: 63 VISG 66
Score = 51.1 bits (123), Expect = 6e-09
Identities = 9/46 (19%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 112 ANMMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI 156
++ S IA + ++ +++F + E I + ++ + +W+ G I
Sbjct: 2 SSGSSGGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRI 47
Score = 36.4 bits (85), Expect = 9e-04
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 283 GTVVPVKQNAEPGWLAGELRG--QTGWFPESYVEPCDE 318
G + + + + W G + G + G FP +YV+
Sbjct: 29 GERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISG 66
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 72.1 bits (175), Expect = 4e-14
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 169 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEP 225
R RA+Y++ + DELSF+ GD + ++ E GW G L GQ G +P +YVE
Sbjct: 428 EVRVRALYDYEGQEHDELSFKAGDELTK-MEDEDEQGWCKGRLDNGQVGLYPANYVEA 484
Score = 42.8 bits (99), Expect = 1e-04
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 288 VKQNAEPGWLAGEL-RGQTGWFPESYVEP 315
++ E GW G L GQ G +P +YVE
Sbjct: 456 MEDEDEQGWCKGRLDNGQVGLYPANYVEA 484
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 65.4 bits (160), Expect = 5e-14
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCD 227
+R Y+F++ + DEL+ + GD + + + W +L G++G P ++EP
Sbjct: 7 KRGIVQYDFMAESQDELTIKSGDKVYI-LDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVR 65
Query: 228 E 228
+
Sbjct: 66 D 66
Score = 34.2 bits (79), Expect = 0.006
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 288 VKQNAEPGWLAGEL--RGQTGWFPESYVEPCDE 318
+ W +L G++G P ++EP +
Sbjct: 34 LDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRD 66
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 66.0 bits (161), Expect = 5e-14
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 164 RGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESY 222
+G + +Y F S +EL+F+ G+ + V K +P W + RGQ G P++Y
Sbjct: 12 QGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNY 71
Query: 223 VEPCDETGEVVPGTELP 239
V + + P P
Sbjct: 72 VVVLSDGPALHPAHSGP 88
Score = 45.5 bits (108), Expect = 1e-06
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTG 154
YP+ S +L F + E + V +K + +WW
Sbjct: 18 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKC 57
Score = 35.9 bits (83), Expect = 0.002
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 296 WLAGELRGQTGWFPESYVEPCDETGEVVPGTELP 329
W RGQ G P++YV + + P P
Sbjct: 55 WKCKNARGQVGLVPKNYVVVLSDGPALHPAHSGP 88
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 66.1 bits (161), Expect = 5e-14
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 170 RRYRAIYEFVSRNG--------DELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPES 221
R + A++++ +EL F+ G II V G+ GE + G P +
Sbjct: 18 RIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKV-YGDKDADGFYRGETCARLGLIPCN 76
Query: 222 YVEPCDETGEVVPGTELP 239
V E + P
Sbjct: 77 MVSEIQADDEEMMDQSGP 94
Score = 42.2 bits (99), Expect = 2e-05
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 293 EPGWLAGELRGQTGWFPESYVEPCDETGEVVPGTELP 329
G+ GE + G P + V E + P
Sbjct: 58 ADGFYRGETCARLGLIPCNMVSEIQADDEEMMDQSGP 94
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 65.4 bits (160), Expect = 6e-14
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 160 TARFRGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGW 217
T R RG + + A+Y++ + D+LSF G+ + ++E W G+TG+
Sbjct: 6 TLRTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQ--ILNSSEGDWWEARSLTTGETGY 63
Query: 218 FPESYVEPCD 227
P +YV P D
Sbjct: 64 IPSNYVAPVD 73
Score = 49.2 bits (118), Expect = 3e-08
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGT 155
++A Y Y++ DL+F++ E + DWW
Sbjct: 16 TLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEAR 54
Score = 35.0 bits (81), Expect = 0.003
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 283 GTVVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCD 317
G + ++E W G+TG+ P +YV P D
Sbjct: 37 GEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 73
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 65.5 bits (160), Expect = 6e-14
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 166 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYV 223
V EY A Y F ELSF+ G+ I + +++ W G + G+ G FP SYV
Sbjct: 14 VLEYGEAVAQYTFKGDLEVELSFRKGEHICL-IRKV-NENWYEGRITGTGRQGIFPASYV 71
Query: 224 EPCDETGEVVPGTELP 239
+ E + P
Sbjct: 72 QVSREPRLRLCDDSGP 87
Score = 36.6 bits (85), Expect = 0.001
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 283 GTVVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDETGEVVPGTELP 329
G + + + W G + G+ G FP SYV+ E + P
Sbjct: 39 GEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPRLRLCDDSGP 87
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 64.5 bits (157), Expect = 6e-14
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
+ +V+ DELS G + V + GW G GQ GWFP +YV
Sbjct: 4 AFVXFAYVAEREDELSLVXGSRVTV--MEXCSDGWWRGSYNGQIGWFPSNYVLE 55
Score = 43.3 bits (102), Expect = 2e-06
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTARF 163
+ Y + +L+ + V + +D WW G+ + F
Sbjct: 4 AFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWF 48
Score = 41.3 bits (97), Expect = 1e-05
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEP 315
G+ V V + GW G GQ GWFP +YV
Sbjct: 23 GSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLE 55
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 64.6 bits (158), Expect = 6e-14
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 171 RYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 225
+ A Y+F S + EL + GD+I + + GW G+L + GW P +Y++P
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYI--TREEPSGWSLGKLLDGSKEGWVPTAYMKP 57
Score = 45.3 bits (108), Expect = 4e-07
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 120 YIAAYPYD-STEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTAR 162
+ AAY + S P +L + +VIY+T++E W G + D +
Sbjct: 3 FEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKE 47
Score = 40.7 bits (96), Expect = 2e-05
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 283 GTVVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 315
G V+ + + GW G+L + GW P +Y++P
Sbjct: 23 GDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP 57
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 65.0 bits (159), Expect = 7e-14
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 170 RRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCD 227
+ R +Y+F +EL+ G+II V N GWL G+ +G+ G P YVE
Sbjct: 10 TKARVMYDFAAEPGNNELTVTEGEIITV-TNPNVGGGWLEGKNNKGEQGLVPTDYVEILP 68
Query: 228 ETG 230
G
Sbjct: 69 NDG 71
Score = 38.5 bits (90), Expect = 2e-04
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 288 VKQNAEPGWLAGEL-RGQTGWFPESYVEPCDETG 320
N GWL G+ +G+ G P YVE G
Sbjct: 38 TNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDG 71
Score = 35.4 bits (82), Expect = 0.002
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 122 AAYPYD-STEPGDLTFNQDEVIYVTKKEND--WWTGTIGD 158
Y + +LT + E+I VT W G
Sbjct: 14 VMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNK 53
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 65.1 bits (159), Expect = 8e-14
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVEPCDET 229
+ +Y + + DEL+ + +++ V ++ W+ GQ G+ PE Y++ +
Sbjct: 15 TCKVVYSYKASQPDELTIEEHEVLEV-IEDGDMEDWVKARNKVGQVGYVPEKYLQFPTSS 73
Query: 230 G 230
G
Sbjct: 74 G 74
Score = 34.6 bits (80), Expect = 0.004
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 288 VKQNAEPGWLAGE-LRGQTGWFPESYVEPCDETG 320
++ W+ GQ G+ PE Y++ +G
Sbjct: 41 IEDGDMEDWVKARNKVGQVGYVPEKYLQFPTSSG 74
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 68.6 bits (167), Expect = 9e-14
Identities = 40/233 (17%), Positives = 70/233 (30%), Gaps = 54/233 (23%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTARF-------------- 163
IA Y + +T +L+F + +++ V +E D W+ + +
Sbjct: 3 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFF 62
Query: 164 ----RGVSEYRRYRA-------IYEFVSRNGD-ELSFQPGD------IIMVPVKQNAEPG 205
R +E + I E S GD LS + G+ ++ +
Sbjct: 63 GKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV 122
Query: 206 WLAGELRGQTGWFPESYVEPCDETGEVVPGTELPGDKHHLELIAEVPENISDSGGSGIAV 265
L + + V + + L P+ + G
Sbjct: 123 VKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELG------ 176
Query: 266 EEGPGIPADIPSPIMGLGTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
G + V N++P W G GQTG FP +YV P +
Sbjct: 177 --------------FRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR 215
Score = 67.4 bits (164), Expect = 2e-13
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
A Y+F + DELSF+ GDI+ V + + + W EL G+ G+ P++Y+E
Sbjct: 2 EAIAKYDFKATADDELSFKRGDILKV-LNEECDQNWYKAELNGKDGFIPKNYIEMKPHP 59
Score = 37.0 bits (85), Expect = 0.005
Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 83 FCSVHLQLSTKEKDLEVNNSNLDDLKKTL------ANMMSDKYYIAAYPYDSTEPGDLTF 136
+ ++ ++ + ++ + S + + Y A + +D E G+L F
Sbjct: 118 YFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGF 177
Query: 137 NQDEVIYVTKKEN-DWWTGTIGDRT 160
+ + I+V + +WW G +T
Sbjct: 178 RRGDFIHVMDNSDPNWWKGACHGQT 202
Score = 35.8 bits (82), Expect = 0.010
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 288 VKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
+ + + W EL G+ G+ P++Y+E
Sbjct: 28 LNEECDQNWYKAELNGKDGFIPKNYIEMKPHP 59
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 64.1 bits (157), Expect = 9e-14
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEP 225
R Y+F++ + DEL+ + GD + + + W +L G++G P ++EP
Sbjct: 3 ERGIVQYDFMAESQDELTIKSGDKVYI-LDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59
Score = 32.9 bits (76), Expect = 0.013
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 288 VKQNAEPGWLAGEL--RGQTGWFPESYVEP 315
+ W +L G++G P ++EP
Sbjct: 30 LDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 64.2 bits (157), Expect = 1e-13
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG--QTGWFPESYVEPCDE 228
A + F E+SF+ G+ I + + + W G + G + G FP +YV+
Sbjct: 8 EAIAKFNFNGDTQVEMSFRKGERIT--LLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR 65
Score = 50.3 bits (121), Expect = 1e-08
Identities = 8/39 (20%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI 156
IA + ++ +++F + E I + ++ + +W+ G I
Sbjct: 8 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRI 46
Score = 37.2 bits (87), Expect = 4e-04
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 283 GTVVPVKQNAEPGWLAGELRG--QTGWFPESYVEPCDE 318
G + + + + W G + G + G FP +YV+
Sbjct: 28 GERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR 65
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 63.8 bits (156), Expect = 1e-13
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCD 227
A Y++ + +EL+F D I+ ++ + W GEL G G FP +YV +
Sbjct: 4 TAEYDYDAAEDNELTFVENDKIIN-IEFV-DDDWWLGELEKDGSKGLFPSNYVSLGN 58
Score = 48.7 bits (117), Expect = 3e-08
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIG 157
+ A Y YD+ E +LTF +++ I + + DWW G +
Sbjct: 2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELE 41
Score = 37.2 bits (87), Expect = 3e-04
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 283 GTVVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCD 317
+ + + W GEL G G FP +YV +
Sbjct: 22 NDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLGN 58
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 63.8 bits (156), Expect = 2e-13
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVEPCDE 228
+ +Y F S +EL+F+ G+ + V K +P W + RGQ G P++YV +
Sbjct: 7 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD 66
Query: 229 T 229
Sbjct: 67 G 67
Score = 33.8 bits (78), Expect = 0.008
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 289 KQNAEPGWLAGE-LRGQTGWFPESYVEPCDET 319
K +P W + RGQ G P++YV +
Sbjct: 36 KPENDPEWWKCKNARGQVGLVPKNYVVVLSDG 67
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 63.0 bits (154), Expect = 3e-13
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEP 225
SE ++ A+Y+++ N ++L + GD + + + W + GQ G+ P +YV
Sbjct: 6 SELKKVVALYDYMPMNANDLQLRKGDEYF--ILEESNLPWWRARDKNGQEGYIPSNYVTE 63
Query: 226 CDET 229
+++
Sbjct: 64 AEDS 67
Score = 48.4 bits (116), Expect = 4e-08
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTG 154
K +A Y Y DL + + ++ ++ N WW
Sbjct: 9 KKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRA 46
Score = 34.1 bits (79), Expect = 0.005
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 283 GTVVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCDET 319
G + + + W + GQ G+ P +YV +++
Sbjct: 30 GDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAEDS 67
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 63.2 bits (154), Expect = 4e-13
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVE 224
S + A+Y++ + +LSF G+ + + W G+TG+ P +YV
Sbjct: 4 SGVTLFVALYDYNATRWTDLSFHKGEKFQ--ILEFGPGDWWEARSLTTGETGYIPSNYVA 61
Query: 225 PCDET-GEVVPGTELPGDKHH 244
P D GE +E HH
Sbjct: 62 PVDSIQGEQKLISEEDLHHHH 82
Score = 49.3 bits (118), Expect = 3e-08
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGT 155
++A Y Y++T DL+F++ E + + DWW
Sbjct: 5 GVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEAR 45
Score = 35.1 bits (81), Expect = 0.003
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 283 GTVVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCDET-GEVVPGTELPGDKHH 334
G + + W G+TG+ P +YV P D GE +E HH
Sbjct: 28 GEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQGEQKLISEEDLHHHH 82
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 62.7 bits (153), Expect = 4e-13
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG-----QTGWFPESYVE 224
+ A + + S D+L+F+ I+V + W GE + G FP+S+V
Sbjct: 9 KVVAQFPYKSDYEDDLNFEKDQEIIV-TSVE-DAEWYFGEYQDSNGDVIEGIFPKSFVA 65
Score = 55.0 bits (133), Expect = 2e-10
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTARFR 164
+A +PY S DL F +D+ I VT E+ W+ G D
Sbjct: 11 VAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVI 55
Score = 34.2 bits (79), Expect = 0.005
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 283 GTVVPVKQNAEPGWLAGELRG-----QTGWFPESYVE 314
+ V + W GE + G FP+S+V
Sbjct: 29 DQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 65
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 63.7 bits (155), Expect = 6e-13
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESYVEPCDET 229
+Y+F + DEL+ G+ + + N W + G G P +V D
Sbjct: 9 IVLYDFKAEKADELTTYVGENLFICAHHN--CEWFIAKPIGRLGGPGLVPVGFVSIIDIA 66
Query: 230 GEVVPGTELPGD 241
G ++ D
Sbjct: 67 TGYATGNDVIED 78
Score = 37.8 bits (88), Expect = 7e-04
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 283 GTVVPVKQNAEPGWLAGEL---RGQTGWFPESYVEPCDETGEVVPGTELPGD 331
G + + + W + G G P +V D G ++ D
Sbjct: 27 GENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIATGYATGNDVIED 78
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 62.4 bits (152), Expect = 7e-13
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 166 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYV 223
V + A+Y++ +R D+LSF G+ + ++E W G+TG+ P Y+
Sbjct: 2 VQISTLFEALYDYEARTEDDLSFHKGEKFQ--ILNSSEGDWWEARSLTTGETGYIPSIYL 59
Query: 224 EPCDE 228
P D
Sbjct: 60 APVDR 64
Score = 47.7 bits (114), Expect = 1e-07
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 117 DKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGT 155
+ A Y Y++ DL+F++ E + DWW
Sbjct: 5 STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEAR 44
Score = 35.0 bits (81), Expect = 0.004
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 283 GTVVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCDE 318
G + ++E W G+TG+ P Y+ P D
Sbjct: 27 GEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDR 64
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 61.9 bits (151), Expect = 7e-13
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEP 225
S AIY F + +S G+ + + ++++ GW G G+ P SY+
Sbjct: 5 SSGGHCVAIYHFEGSSEGTISMAEGEDLSL-MEEDKGDGWTRVRRKEGGEGYVPTSYLRV 63
Query: 226 CDE 228
Sbjct: 64 TSG 66
Score = 33.4 bits (77), Expect = 0.011
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 288 VKQNAEPGWLAGEL-RGQTGWFPESYVEPCDE 318
++++ GW G G+ P SY+
Sbjct: 35 MEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSG 66
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 61.9 bits (151), Expect = 8e-13
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 227
A Y F +L F GD++ + V +P W + + G+ G P +YV+ +
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTI-VAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69
Score = 46.9 bits (112), Expect = 2e-07
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTG 154
IA Y + T DL F + +V+ + D W+
Sbjct: 14 CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKA 50
Score = 33.0 bits (76), Expect = 0.013
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 288 VKQNAEPGWLAGELR-GQTGWFPESYVEPCD 317
V +P W + + G+ G P +YV+ +
Sbjct: 39 VAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 62.0 bits (151), Expect = 9e-13
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 227
+ + + E++ + GDI+ + N W E+ + G+ P +YV+ D
Sbjct: 4 PPLPPYSAGG-REVTMKKGDILTLLNSTN--KDWWKVEVNDRQGFVPAAYVKKLD 55
Score = 49.3 bits (118), Expect = 2e-08
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
PY + ++T + +++ + N DWW + DR
Sbjct: 4 PPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFV 46
Score = 41.6 bits (98), Expect = 1e-05
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 317
G ++ + + W E+ + G+ P +YV+ D
Sbjct: 21 GDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 55
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 61.6 bits (150), Expect = 1e-12
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 171 RYRAIYEFVSRNGD--ELSFQPGDIIMVPVKQNAEPG-WLAGELRGQTGWFPESYVEPCD 227
+ +A+Y + + + D E+SF+ +I+ V + E W A G+TG P +YV+ D
Sbjct: 7 KAKALYPYDADDDDAYEISFEQNEILQV---SDIEGRWWKARRANGETGIIPSNYVQLID 63
Query: 228 ETGEV 232
E+
Sbjct: 64 GPEEM 68
Score = 46.6 bits (111), Expect = 2e-07
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 121 IAAYPYDS--TEPGDLTFNQDEVIYVTKKENDWWTGTIGD 158
A YPYD+ + +++F Q+E++ V+ E WW +
Sbjct: 9 KALYPYDADDDDAYEISFEQNEILQVSDIEGRWWKARRAN 48
Score = 38.9 bits (91), Expect = 1e-04
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV 322
++ V W A G+TG P +YV+ D E+
Sbjct: 29 NEILQVSDIEGRWWKARRANGETGIIPSNYVQLIDGPEEM 68
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 62.1 bits (151), Expect = 1e-12
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 167 SEYRRYRAIYEFVSRN-GDELSFQPGDIIMV---PVKQNAEPGWLAGELR-GQTGWFPES 221
S+ RA+Y+FV N E++ + GD++ + + W + G G+ P +
Sbjct: 12 SKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 71
Query: 222 YVEPCDETGEVVP 234
Y+E ++
Sbjct: 72 YIEIIKRRKKIEH 84
Score = 39.0 bits (91), Expect = 2e-04
Identities = 7/48 (14%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 118 KYYIAAYPYDSTEP-GDLTFNQDEVIYVTKK------ENDWWTGTIGD 158
++ A Y + P ++ + +++ + K ++DWW +
Sbjct: 15 EFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKN 62
Score = 36.0 bits (83), Expect = 0.002
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 290 QNAEPGWLAGELR-GQTGWFPESYVEPCDETGEVVP 324
+ W + G G+ P +Y+E ++
Sbjct: 49 LGRDSDWWKVRTKNGNIGYIPYNYIEIIKRRKKIEH 84
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 60.1 bits (146), Expect = 3e-12
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-----RGQTGWFPESYVE 224
+Y +++F SR +ELSF+ GD+ V + E W A L G+ P +Y+
Sbjct: 11 PKYVGLWDFKSRTDEELSFRAGDVFH--VARKEEQWWWATLLDEAGGAVAQGYVPHNYLA 68
Query: 225 PCD 227
+
Sbjct: 69 ERE 71
Score = 49.7 bits (119), Expect = 2e-08
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW 152
Y+ + + S +L+F +V +V +KE WW
Sbjct: 12 KYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWW 45
Score = 32.4 bits (74), Expect = 0.026
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 283 GTVVPVKQNAEPGWLAGEL-----RGQTGWFPESYVEPCD 317
G V V + E W A L G+ P +Y+ +
Sbjct: 32 GDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE 71
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 60.0 bits (146), Expect = 3e-12
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
+ Y+F +RN ELS + D++ V ++ W + GQ G+ P + + P
Sbjct: 6 GALKWVLCNYDFQARNSSELSVKQRDVLE--VLDDSRKWWKVRDPAGQEGYVPYNILTPY 63
Query: 227 D 227
Sbjct: 64 P 64
Score = 48.1 bits (115), Expect = 5e-08
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG 154
K+ + Y + + +L+ Q +V+ V WW
Sbjct: 9 KWVLCNYDFQARNSSELSVKQRDVLEVLDDSRKWWKV 45
Score = 34.6 bits (80), Expect = 0.004
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 296 WLAGELRGQTGWFPESYVEPCD 317
W + GQ G+ P + + P
Sbjct: 43 WKVRDPAGQEGYVPYNILTPYP 64
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 60.1 bits (146), Expect = 4e-12
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 167 SEYRRYRAIYEFVSRNGD-ELSFQPGDIIMV---PVKQNAEPGWLAGELR-GQTGWFPES 221
S+ RA+Y+FV N + E++ + GD++ + + W + G G+ P +
Sbjct: 12 SKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 71
Query: 222 YVEPCDET 229
Y+E
Sbjct: 72 YIEIIKRR 79
Score = 38.2 bits (89), Expect = 3e-04
Identities = 7/48 (14%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 118 KYYIAAYPYDSTEPG-DLTFNQDEVIYVTKK------ENDWWTGTIGD 158
++ A Y + P ++ + +++ + K ++DWW +
Sbjct: 15 EFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKN 62
Score = 33.9 bits (78), Expect = 0.009
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 290 QNAEPGWLAGELR-GQTGWFPESYVEPCDET 319
+ W + G G+ P +Y+E
Sbjct: 49 LGRDSDWWKVRTKNGNIGYIPYNYIEIIKRR 79
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 59.9 bits (145), Expect = 5e-12
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 181 RNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD-----ETGEVVPG 235
E++ + GDI+ + + W E+ + G+ P +YV+ D E +
Sbjct: 3 MGPREVTMKKGDILTL--LNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYD 60
Query: 236 TELPGDKHHLELIAEVP 252
+ GD P
Sbjct: 61 YQESGDNAPSYSPPPPP 77
Score = 43.3 bits (102), Expect = 4e-06
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 318
G ++ + + W E+ + G+ P +YV+ D
Sbjct: 13 GDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDS 48
Score = 40.2 bits (94), Expect = 5e-05
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 130 EPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
P ++T + +++ + N DWW + DR
Sbjct: 4 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFV 38
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 60.3 bits (146), Expect = 5e-12
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 167 SEYRRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG------QTGWFP 219
+ RA+ +F + L+ + GD+I V ++Q+ G G + + G+FP
Sbjct: 16 RGSLKVRALKDFWNLHDPTALNVRAGDVITV-LEQH-PDGRWKGHIHESQRGTDRIGYFP 73
Query: 220 ESYVEPCDE 228
VE +
Sbjct: 74 PGIVEVVSK 82
Score = 36.4 bits (84), Expect = 0.001
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 283 GTVVPVKQNAEPGWLAGELRG------QTGWFPESYVEPCDE 318
G V+ V + G G + + G+FP VE +
Sbjct: 41 GDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVSK 82
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 60.9 bits (148), Expect = 5e-12
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ +R ++LSF+ G+ + + W A + G++G+ P +YV P D
Sbjct: 28 TIFVALYDYEARTTEDLSFKKGERFQI-INNTEGDWWEARSIATGKSGYIPSNYVVPAD 85
Score = 31.7 bits (72), Expect = 0.092
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 288 VKQNAEPGWLAGELR-GQTGWFPESYVEPCD 317
+ W A + G++G+ P +YV P D
Sbjct: 55 INNTEGDWWEARSIATGKSGYIPSNYVVPAD 85
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 59.2 bits (144), Expect = 6e-12
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
A+Y+F + +L + G ++ +++N W A + G G+ P +YV
Sbjct: 3 EIVVAMYDFQATEAHDLRLERGQEYII-LEKNDLHWWRARDKYGSEGYIPSNYVTGKKSN 61
Score = 48.0 bits (115), Expect = 6e-08
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTG 154
+ +A Y + +TE DL + + + +K + WW
Sbjct: 3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRA 40
Score = 32.6 bits (75), Expect = 0.019
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 296 WLAGELRGQTGWFPESYVEPCDET 319
W A + G G+ P +YV
Sbjct: 38 WRARDKYGSEGYIPSNYVTGKKSN 61
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 58.5 bits (142), Expect = 1e-11
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 184 DELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 229
E++ + GDI+ + N W E+ + G+ P +YV+ D
Sbjct: 4 REVTMKKGDILTLLNSTN--KDWWKVEVNDRQGFVPAAYVKKLDSG 47
Score = 43.9 bits (104), Expect = 2e-06
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 130 EPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
P ++T + +++ + N DWW + DR
Sbjct: 2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFV 36
Score = 42.7 bits (101), Expect = 5e-06
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 319
G ++ + + W E+ + G+ P +YV+ D
Sbjct: 11 GDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG 47
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 58.9 bits (142), Expect = 1e-11
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEP 225
+ Y I G L PGDI+ + K AE W G + GWFP + V P
Sbjct: 19 QEYYGIPPPPGAFGGFLRLNPGDIVEL-TKAEAEHNWWEGRNTATNEVGWFPCNRVHP 75
Score = 35.4 bits (81), Expect = 0.003
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 288 VKQNAEPGWLAGEL--RGQTGWFPESYVEP 315
K AE W G + GWFP + V P
Sbjct: 46 TKAEAEHNWWEGRNTATNEVGWFPCNRVHP 75
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 58.6 bits (142), Expect = 1e-11
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW---------LAGELRGQTGW 217
S + + A++++ +R ++LSF+ GD + V + GW G + G+
Sbjct: 5 SSGQYFVALFDYQARTAEDLSFRAGDKLQ--VLDTSHEGWWLARHLEKKGTGLGQQLQGY 62
Query: 218 FPESYVEP 225
P +YV
Sbjct: 63 IPSNYVAE 70
Score = 30.9 bits (70), Expect = 0.086
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 9/42 (21%)
Query: 283 GTVVPVKQNAEPGW---------LAGELRGQTGWFPESYVEP 315
G + V + GW G + G+ P +YV
Sbjct: 29 GDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAE 70
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 60.0 bits (145), Expect = 1e-11
Identities = 24/124 (19%), Positives = 39/124 (31%), Gaps = 13/124 (10%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESYVEPCDET 229
+YEF + DEL PG+ + + + W + G G P SYV D
Sbjct: 7 VTLYEFKAERDDELDVSPGENLSICAHYD--YEWFIAKPINRLGGPGLVPVSYVRIIDLM 64
Query: 230 GEVVPGTELPGDKHHLELIAEVPENISDSGGSGIAVEEGPGIPADIPSPIMGLGTVVPVK 289
+ D+ +V + I + VE+ + +G
Sbjct: 65 DPAKYASVDTYDRE------QVMKIIDEFKIPT--VEQWKDQTRRYKESSIQIGNGHGQS 116
Query: 290 QNAE 293
Q E
Sbjct: 117 QGLE 120
Score = 35.7 bits (82), Expect = 0.005
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 283 GTVVPVKQNAEPGWLAGEL---RGQTGWFPESYVEPCDETGEVVPGTELPGDKH 333
G + + + + W + G G P SYV D + D+
Sbjct: 25 GENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLMDPAKYASVDTYDRE 78
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 58.2 bits (141), Expect = 2e-11
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 173 RAIYEFVSRNGD-ELSFQPGDIIMV---PVKQNAEPGWLAGELR-GQTGWFPESYVEP 225
RA+Y+FV N + E++ + GD++ + + W + G G+ P +Y+E
Sbjct: 11 RALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 68
Score = 37.4 bits (87), Expect = 4e-04
Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 118 KYYIAAYPYDSTEP-GDLTFNQDEVIYVTKK------ENDWWTGTIGD 158
+ A Y + P ++ + +++ + K ++DWW +
Sbjct: 8 HFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKN 55
Score = 33.9 bits (78), Expect = 0.007
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 290 QNAEPGWLAGELR-GQTGWFPESYVEP 315
+ W + G G+ P +Y+E
Sbjct: 42 LGRDSDWWKVRTKNGNIGYIPYNYIEI 68
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 58.5 bits (142), Expect = 2e-11
Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 153 TGTIGDRTARFRGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR 212
+G+ G+ R E A+Y++ + + EL+ + + + ++E W + R
Sbjct: 3 SGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYC--LLDSSEIHWWRVQDR 60
Query: 213 -GQTGWFPESYVEPCDETG 230
G G+ P SY+
Sbjct: 61 NGHEGYVPSSYLVEKSPNN 79
Score = 45.1 bits (107), Expect = 1e-06
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 117 DKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTG 154
+ IA Y Y + +P +L ++E + WW
Sbjct: 19 ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRV 57
Score = 30.0 bits (68), Expect = 0.19
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 296 WLAGELRGQTGWFPESYVEPCDETG 320
W + G G+ P SY+
Sbjct: 55 WRVQDRNGHEGYVPSSYLVEKSPNN 79
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 58.0 bits (141), Expect = 2e-11
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG 154
+A YPYD P DL+F + E + V ++ +WW
Sbjct: 6 QGDIVVALYPYDGIHPDDLSFKKGEKMKVLEEHGEWWKA 44
Score = 57.7 bits (140), Expect = 3e-11
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEP 225
+ A+Y + + D+LSF+ G+ + V ++++ E W A L + G+ P +YV
Sbjct: 5 EQGDIVVALYPYDGIHPDDLSFKKGEKMKV-LEEHGE-WWKAKSLLTKKEGFIPSNYVAK 62
Query: 226 CD 227
+
Sbjct: 63 LN 64
Score = 29.9 bits (68), Expect = 0.16
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 283 GTVVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 317
G + V + W A L + G+ P +YV +
Sbjct: 29 GEKMKVLEEHGEWWKAKSLLTKKEGFIPSNYVAKLN 64
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 57.7 bits (140), Expect = 2e-11
Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW--------LAGELRGQTGWFPESYV 223
A+Y++ ++ E++ + GDI+ + + W + G+ + G+ P +YV
Sbjct: 4 VLALYDYQEKSPREVTMKKGDILT--LLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61
Query: 224 EPCD 227
+ D
Sbjct: 62 KKLD 65
Score = 30.4 bits (69), Expect = 0.13
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 283 GTVVPVKQNAEPGW--------LAGELRGQTGWFPESYVEPCD 317
G ++ + + W + G+ + G+ P +YV+ D
Sbjct: 23 GDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKLD 65
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 56.9 bits (138), Expect = 4e-11
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 115 MSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG 154
+ D IA + Y+ + GDL F + E + + ++ +WW
Sbjct: 4 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKA 43
Score = 53.1 bits (128), Expect = 9e-10
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 168 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEP 225
+ A++ + + +L F+ G+ + + W + GQ G+ P ++V
Sbjct: 5 QDNLVIALHSYEPSHDGDLGFEKGEQLRI---LEQSGEWWKAQSLTTGQEGFIPFNFVAK 61
Score = 27.7 bits (62), Expect = 0.89
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 296 WLA-GELRGQTGWFPESYVEP 315
W A GQ G+ P ++V
Sbjct: 41 WKAQSLTTGQEGFIPFNFVAK 61
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 56.5 bits (137), Expect = 7e-11
Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
+E A +++V++ EL + + + + +++ W +TG+ P +YVE
Sbjct: 5 AEEVVVVAKFDYVAQQEQELDIKKNERLW--LLDDSKSWWRVRNSMNKTGFVPSNYVERK 62
Query: 227 D 227
+
Sbjct: 63 N 63
Score = 49.2 bits (118), Expect = 3e-08
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 112 ANMMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG 154
+ M + +A + Y + + +L ++E +++ WW
Sbjct: 2 STMAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRV 44
Score = 31.9 bits (73), Expect = 0.043
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 296 WLAGELRGQTGWFPESYVEPCD 317
W +TG+ P +YVE +
Sbjct: 42 WRVRNSMNKTGFVPSNYVERKN 63
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 56.7 bits (137), Expect = 9e-11
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEP 225
SE A+Y++ + + ++LSFQ GD ++V ++++ E W A L + G+ P +YV
Sbjct: 23 SEDIIVVALYDYEAIHHEDLSFQKGDQMVV-LEESGE-WWKARSLATRKEGYIPSNYVAR 80
Query: 226 CD 227
D
Sbjct: 81 VD 82
Score = 55.9 bits (135), Expect = 1e-10
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG 154
D +A Y Y++ DL+F + + + V ++ +WW
Sbjct: 24 EDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKA 62
Score = 29.7 bits (67), Expect = 0.33
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 296 WLAGELR-GQTGWFPESYVEPCD 317
W A L + G+ P +YV D
Sbjct: 60 WKARSLATRKEGYIPSNYVARVD 82
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 56.6 bits (137), Expect = 9e-11
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 115 MSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG 154
M D +A Y Y S P DL+F + + + V ++ +WW
Sbjct: 1 MEDIIVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKA 40
Score = 53.6 bits (129), Expect = 1e-09
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 227
A+Y++VS + D+LSFQ GD ++V ++++ E W A L + G+ P +YV D
Sbjct: 6 VVALYDYVSWSPDDLSFQKGDQMVV-LEESGE-WWKARSLATRKEGYIPSNYVARVD 60
Score = 27.7 bits (62), Expect = 1.5
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 296 WLAGELR-GQTGWFPESYVEPCD 317
W A L + G+ P +YV D
Sbjct: 38 WKARSLATRKEGYIPSNYVARVD 60
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 55.7 bits (135), Expect = 1e-10
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
+E A +++ ++ EL + + + + +++ W +TG+ P +YVE
Sbjct: 2 TEEVIVIAKWDYTAQQDQELDIKKNERLW--LLDDSKTWWRVRNAANRTGYVPSNYVERK 59
Query: 227 DET 229
E
Sbjct: 60 LEH 62
Score = 53.0 bits (128), Expect = 1e-09
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 114 MMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG 154
M + IA + Y + + +L ++E +++ WW
Sbjct: 1 MTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRV 41
Score = 30.7 bits (70), Expect = 0.10
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 296 WLAGELRGQTGWFPESYVEPCDET 319
W +TG+ P +YVE E
Sbjct: 39 WRVRNAANRTGYVPSNYVERKLEH 62
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 56.3 bits (136), Expect = 1e-10
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEP 225
+ + ++ S + F+ G+ + V + W A L G+ + P V
Sbjct: 15 LDSDFLAVLSDYPSPDISPPIFRRGEKLRV-ISDEGG-WWKAISLSTGRESYIPGICVAR 72
Query: 226 CD 227
Sbjct: 73 VS 74
Score = 52.8 bits (127), Expect = 2e-09
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG 154
+ Y S + F + E + V E WW
Sbjct: 16 DSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGGWWKA 54
Score = 30.1 bits (68), Expect = 0.18
Identities = 6/23 (26%), Positives = 8/23 (34%), Gaps = 1/23 (4%)
Query: 296 WLAGELR-GQTGWFPESYVEPCD 317
W A L G+ + P V
Sbjct: 52 WKAISLSTGRESYIPGICVARVS 74
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 56.2 bits (136), Expect = 1e-10
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
E A+Y++ + + EL+ + + + + + W + G G+ P SY+
Sbjct: 18 PEETLVIALYDYQTNDPQELALRCDEEYYL-LDSSEIHWWRVQDKNGHEGYAPSSYLV 74
Score = 46.2 bits (110), Expect = 4e-07
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTG 154
+ IA Y Y + +P +L DE Y+ WW
Sbjct: 19 EETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRV 58
Score = 31.2 bits (71), Expect = 0.084
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 296 WLAGELRGQTGWFPESYVE 314
W + G G+ P SY+
Sbjct: 56 WRVQDKNGHEGYAPSSYLV 74
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 57.0 bits (137), Expect = 2e-10
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 164 RGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPE 220
+ R AIY F +LS Q GD++ + + W G L + G FP+
Sbjct: 54 SSGDKERHGVAIYNFQGSGAPQLSLQIGDVVRI-QETC--GDWYRGYLIKHKMLQGIFPK 110
Query: 221 SYVEPCDET 229
S++ + T
Sbjct: 111 SFIHIKEVT 119
Score = 31.6 bits (71), Expect = 0.13
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 293 EPGWLAGEL---RGQTGWFPESYVEPCDET 319
W G L + G FP+S++ + T
Sbjct: 90 CGDWYRGYLIKHKMLQGIFPKSFIHIKEVT 119
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 55.5 bits (134), Expect = 2e-10
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEP 225
+ E EL+F+ GD++ + ++ W + GQ G +
Sbjct: 19 QCITKCEHTRPKPGELAFRKGDVVTI-LEACENKSWYRVKHHTSGQEGLLAAGALRE 74
Score = 43.9 bits (104), Expect = 3e-06
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTG 154
I + +PG+L F + +V+ + + + W+
Sbjct: 20 CITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRV 56
Score = 30.1 bits (68), Expect = 0.22
Identities = 4/30 (13%), Positives = 8/30 (26%), Gaps = 2/30 (6%)
Query: 288 VKQNAEPGWLAGE--LRGQTGWFPESYVEP 315
++ W + GQ G +
Sbjct: 45 LEACENKSWYRVKHHTSGQEGLLAAGALRE 74
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 55.4 bits (133), Expect = 2e-10
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEP 225
+ Y I G L PGDI+ + K AE W G + GWFP + V P
Sbjct: 11 QEYYGIPPPPGAFGPFLRLNPGDIVEL-TKAEAEHNWWEGRNTATNEVGWFPCNRVHP 67
Score = 36.1 bits (83), Expect = 0.001
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 284 TVVPVKQNAEPGWLAGEL--RGQTGWFPESYVEP 315
V K AE W G + GWFP + V P
Sbjct: 34 IVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP 67
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 54.6 bits (132), Expect = 3e-10
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 225
+ ++ Y+FV+RN ELS D++ + + W G +G+ P + ++
Sbjct: 2 KYAKSKYDFVARNSSELSVMKDDVLE--ILDDRRQWWKVRNASGDSGFVPNNILDI 55
Score = 45.3 bits (108), Expect = 5e-07
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG 154
KY + Y + + +L+ +D+V+ + WW
Sbjct: 2 KYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKV 38
Score = 31.8 bits (73), Expect = 0.034
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 296 WLAGELRGQTGWFPESYVEP 315
W G +G+ P + ++
Sbjct: 36 WKVRNASGDSGFVPNNILDI 55
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 55.2 bits (133), Expect = 3e-10
Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
+E A +++ ++ EL + + + + +++ W +TG+ P +YVE
Sbjct: 29 TEEVIVIAKWDYTAQQDQELDIKKNERLW--LLDDSKTWWRVRNAANRTGYVPSNYVE 84
Score = 49.0 bits (117), Expect = 5e-08
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG 154
+ IA + Y + + +L ++E +++ WW
Sbjct: 30 EEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRV 68
Score = 32.1 bits (73), Expect = 0.048
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 296 WLAGELRGQTGWFPESYVE 314
W +TG+ P +YVE
Sbjct: 66 WRVRNAANRTGYVPSNYVE 84
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 54.4 bits (131), Expect = 5e-10
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW----LAGELRGQTGWFPESYVEPCD 227
Y +I ++ + FQ G + V +++N GW + ++ GW P +Y+E +
Sbjct: 13 YVSIADYEGDE-ETAGFQEGVSMEV-LERN-PNGWWYCQILDGVKPFKGWVPSNYLEKKN 69
Query: 228 ET 229
Sbjct: 70 SG 71
Score = 44.4 bits (105), Expect = 1e-06
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTARFRG 165
Y++ Y+ E F + + V ++ N WW I D F+G
Sbjct: 13 YVSIADYEGDE-ETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKG 58
Score = 36.7 bits (85), Expect = 7e-04
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 283 GTVVPVKQNAEPGW----LAGELRGQTGWFPESYVEPCDET 319
G + V + GW + ++ GW P +Y+E +
Sbjct: 31 GVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNSG 71
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 58.0 bits (140), Expect = 1e-09
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV 232
A+++ V+ + EL F+ GD+I V W G + GWFP S+V E
Sbjct: 34 EALWDHVTMDDQELGFKAGDVI--EVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEP 91
Query: 233 VPGTE 237
Sbjct: 92 ADDDA 96
Score = 41.5 bits (97), Expect = 3e-04
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 109 KTLANMMSDK---YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARF 163
+ ++SD A + + + + +L F +VI V N +WW G + D F
Sbjct: 19 LAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWF 77
Score = 35.3 bits (81), Expect = 0.024
Identities = 12/45 (26%), Positives = 15/45 (33%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPGTE 327
G V+ V W G + GWFP S+V E
Sbjct: 52 GDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDDA 96
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 56.2 bits (134), Expect = 2e-09
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 13/69 (18%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE---PGWLAG----------ELRGQTG 216
+ +A +++ + + DEL + GD+++V QN E GWL G +L G
Sbjct: 143 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRG 202
Query: 217 WFPESYVEP 225
FPE++ E
Sbjct: 203 VFPENFTER 211
Score = 33.9 bits (76), Expect = 0.051
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 120 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND------WWTGTIGDRTARFRGVSEYR 170
A + Y +T+ +L +V+ V +N W G + + + + R
Sbjct: 145 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCR 201
Score = 28.9 bits (63), Expect = 1.7
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 10/33 (30%)
Query: 293 EPGWLAG----------ELRGQTGWFPESYVEP 315
+ GWL G +L G FPE++ E
Sbjct: 179 DEGWLMGVKESDWNQHKKLEKCRGVFPENFTER 211
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 54.4 bits (130), Expect = 3e-09
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
++F +L F+ G+ + + + + + W A G TG P +YV+
Sbjct: 116 PIIEVVVGTFKFTGERETDLPFEQGERLEI-LSKTNQDWWEARNALGTTGLVPANYVQ 172
Score = 48.2 bits (114), Expect = 5e-07
Identities = 14/110 (12%), Positives = 29/110 (26%), Gaps = 6/110 (5%)
Query: 50 HQRLKITKDHTIKAKEEGDLKDTQSSSDGSQDVFCSVHLQLSTKEKDLEVNNSNLDDLKK 109
+ I+ E + + + F + L+ + + S
Sbjct: 56 ADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASL-----L 110
Query: 110 TLANMMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD 158
+ + + + DL F Q E + + K DWW
Sbjct: 111 AAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNAL 160
Score = 35.2 bits (80), Expect = 0.013
Identities = 22/140 (15%), Positives = 37/140 (26%), Gaps = 17/140 (12%)
Query: 176 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPG 235
Y R DE + +I + E G A ++ FP+
Sbjct: 49 YSLTVREADEGNAVCHYLIER--GEPKEDGTAAAGVKIANQSFPDIPALLNHFK------ 100
Query: 236 TELPGDKHHLELIAEVPENISDSGGSGIAVEEGPGIPADIPSPIMGLGTVVPVKQNAEPG 295
+ + L + + E D+P G + +
Sbjct: 101 MRVLTEASLLAAYKKPIIEVVVGTFKFTGERET-----DLP---FEQGERLEILSKTNQD 152
Query: 296 WLAGE-LRGQTGWFPESYVE 314
W G TG P +YV+
Sbjct: 153 WWEARNALGTTGLVPANYVQ 172
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 54.7 bits (131), Expect = 4e-09
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
Query: 160 TARFRGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTG 216
A +R + R AIY F +LS Q GD++ + W G L + G
Sbjct: 8 MAPWRKADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQET---CGDWYRGYLIKHKMLQG 64
Query: 217 WFPESYVEPCDETGEVVPGTELPGDKHHLELIAEVPENISD 257
FP+S++ + T E TE + L EV + +
Sbjct: 65 IFPKSFIHIKEVTVEKRRNTE-NIIPAEIPLAQEVTTTLWE 104
Score = 49.3 bits (117), Expect = 3e-07
Identities = 13/107 (12%), Positives = 34/107 (31%), Gaps = 5/107 (4%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTARFRGVSEYRRYRAIYE 177
++ +A Y + + L+ +V+ + + DW+ G + G+
Sbjct: 18 RHGVAIYNFQGSGAPQLSLQIGDVVRIQETCGDWYRGYLIKHKMLQ-GIFPKSFIHIKEV 76
Query: 178 FVSRNGDELSFQPGDIIMVPVKQNA----EPGWLAGELRGQTGWFPE 220
V + + + P +I + W + + F +
Sbjct: 77 TVEKRRNTENIIPAEIPLAQEVTTTLWEWGSIWKQLYVASKKERFLQ 123
Score = 28.5 bits (63), Expect = 2.2
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 293 EPGWLAGEL---RGQTGWFPESYVEPCDETGEVVPGTE 327
W G L + G FP+S++ + T E TE
Sbjct: 48 CGDWYRGYLIKHKMLQGIFPKSFIHIKEVTVEKRRNTE 85
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 54.1 bits (129), Expect = 1e-08
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 5/136 (3%)
Query: 115 MSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTARFRGVSEYRRYRA 174
+ I +DS + + T E + E RA
Sbjct: 85 SPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSR---SRQGSGVILRQEEAEYVRA 141
Query: 175 IYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVP 234
+++F + ++L F+ GDI+ + + E W A + G+ G P YVE
Sbjct: 142 LFDFNGNDEEDLPFKKGDILRI-RDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPA-SASV 199
Query: 235 GTELPGDKHHLELIAE 250
+ G++
Sbjct: 200 SALIGGNQEGSHPQPL 215
Score = 35.6 bits (81), Expect = 0.012
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 283 GTVVPVKQNAEPGWLAGE-LRGQTGWFPESYVEP 315
G ++ ++ E W E G+ G P YVE
Sbjct: 158 GDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 191
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 51.2 bits (122), Expect = 1e-08
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE-PGWLAGELRGQ--------TGWFPES 221
A+ ++++ + L+ G ++ V K + G ++G G+FP S
Sbjct: 24 MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSS 83
Query: 222 YVEPCDETGE 231
V
Sbjct: 84 IVREDQTLKP 93
Score = 41.5 bits (97), Expect = 3e-05
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 121 IAAYPYDSTEPGDLTFNQDEVIYVTKKE----NDWWTGTIGDRTARFRG 165
+A Y + + LT ++ +V+YV K +W G++
Sbjct: 26 VALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLA 74
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 50.1 bits (120), Expect = 1e-08
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI 156
+ +A Y Y P ++T + +++ + N DWW +
Sbjct: 22 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61
Score = 45.9 bits (109), Expect = 4e-07
Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL 211
+ A+Y++ ++ E++ + GDI+ + + W E+
Sbjct: 19 TGKELVLALYDYQEKSPREVTMKKGDILT--LLNSTNKDWWKVEV 61
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 53.6 bits (129), Expect = 2e-08
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 171 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG 230
+ +Y++ ++N DEL+F G II V +P W GE+ GQ G FP +YV+ +
Sbjct: 4 QVIGMYDYTAQNDDELAFSKGQIINVL--NKEDPDWWKGEVSGQVGLFPSNYVKLTTDMD 61
Query: 231 EVVPGTELPGDKHHLE 246
L
Sbjct: 62 PSQQWCSDLHLLDMLT 77
Score = 41.3 bits (97), Expect = 2e-04
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTARFRGVSEY 169
I Y Y + +L F++ ++I V KE+ DWW G + + F
Sbjct: 4 QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVK 55
Score = 30.9 bits (70), Expect = 0.50
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 283 GTVVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPGTELPGDKHHLE 336
G ++ V +P W GE+ GQ G FP +YV+ + L
Sbjct: 24 GQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPSQQWCSDLHLLDMLT 77
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 53.7 bits (128), Expect = 3e-08
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 169 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 225
AIY R DE+ +PGDII V N G+ G R G+TG +P V
Sbjct: 442 AHNQIAIYAHQPRTADEIPMEPGDIIG--VAGNHWDGYSKGVNRKLGRTGLYPSYKVRE 498
Score = 34.1 bits (77), Expect = 0.073
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 283 GTVVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 315
G ++ V N G+ G R G+TG +P V
Sbjct: 464 GDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVRE 498
Score = 29.4 bits (65), Expect = 2.0
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 115 MSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT 155
+ IA Y + ++ ++I V D + G
Sbjct: 440 QNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGV 481
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 47.7 bits (113), Expect = 2e-07
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE--PGWLAGELRGQTGWFPESYVEPCD 227
+ ++A F + ++S GD++ V K++ + G+ S+++P +
Sbjct: 18 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYN 77
Query: 228 ETGEVVPGTELPGD 241
+ P
Sbjct: 78 PRRSHSDASSGPSS 91
Score = 33.8 bits (77), Expect = 0.012
Identities = 9/50 (18%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 108 KKTLANMMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKE-----NDWW 152
LA +K + A +++ + D++ + +++ V KK+ + W
Sbjct: 8 ASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRW 57
Score = 28.4 bits (63), Expect = 1.1
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 283 GTVVPVKQNAEP----GWLAGELRGQTGWFPESYVEPCDETGEVVPGTELPGD 331
G +V V + +P + G+ S+++P + + P
Sbjct: 39 GDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRSHSDASSGPSS 91
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 50.9 bits (122), Expect = 3e-07
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 226
++ + A+Y+FV+ + LS G+ + V + N W + + GW P +Y+ P
Sbjct: 41 NDPNLFVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITPV 99
Query: 227 D 227
+
Sbjct: 100 N 100
Score = 41.3 bits (97), Expect = 3e-04
Identities = 5/37 (13%), Positives = 15/37 (40%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW 152
++A Y + ++ L+ + E + V ++
Sbjct: 42 DPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGE 78
Score = 29.0 bits (65), Expect = 2.7
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 288 VKQNAEPGWLAGELRGQTGWFPESYVEPCD 317
+ N W + + GW P +Y+ P +
Sbjct: 71 LGYNHNGEWCEAQTKNGQGWVPSNYITPVN 100
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 48.1 bits (115), Expect = 2e-06
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 170 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW-LAGELRGQTGWFPESYVEPCD 227
A Y F +L F GD++ + V +P W A G+ G P +YV+ +
Sbjct: 12 TECIAKYNFHGTAEQDLPFCKGDVLTI-VAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69
Score = 40.4 bits (95), Expect = 5e-04
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYV--TKKENDWW-----TGTIG 157
S IA Y + T DL F + +V+ + K+ +W+ G G
Sbjct: 10 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREG 58
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 45.4 bits (107), Expect = 5e-06
Identities = 12/63 (19%), Positives = 22/63 (34%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTARFRGVSEYRRYRAI 175
D IA + Y+ + GDL F + E + + ++ +WW +
Sbjct: 11 QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAKANS 70
Query: 176 YEF 178
E
Sbjct: 71 LEP 73
Score = 42.4 bits (99), Expect = 4e-05
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 167 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVE 224
+ A++ + + +L F+ G+ + + W + GQ G+ P ++V
Sbjct: 10 LQDNLVIALHSYEPSHDGDLGFEKGEQLRIL---EQSGEWWKAQSLTTGQEGFIPFNFVA 66
Query: 225 PC 226
Sbjct: 67 KA 68
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 46.3 bits (110), Expect = 8e-06
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 172 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 227
+ A+Y++ SR +LSF+ G+ + + V WLA L GQTG+ P +YV P D
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
Score = 40.5 bits (95), Expect = 5e-04
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 118 KYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWW 152
++A Y Y+S DL+F + E + + E DWW
Sbjct: 3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWW 38
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 2e-05
Identities = 37/272 (13%), Positives = 77/272 (28%), Gaps = 101/272 (37%)
Query: 15 LLSVILTAIAPQTIVTPRLMVHGAPLLLRIL-----------QNWAH---QRLKITKDHT 60
LL L PQ + PR ++ P L I+ NW H +L + +
Sbjct: 306 LLLKYLD-CRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 61 IKAKEEGDLKD-----------------------TQSSSDGSQDVFCSVHLQLSTKEKDL 97
+ E + + V +H + S EK
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-KYSLVEKQP 421
Query: 98 EVNNSNLDDL----------KKTLANMMSDKY------------------YIAAY-PY-- 126
+ + ++ + + L + D Y Y ++ +
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 127 DSTEPG-----------DLTFNQDEVIYVTKKENDWWTGTIGDRTARFRGVSEYRRY--- 172
+ E D F + ++ + + N +G+I + + + Y+ Y
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA--SGSILNTLQQLK---FYKPYICD 536
Query: 173 ---------RAIYEFVSRNGDELSFQP-GDII 194
AI +F+ + + L D++
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 44.3 bits (105), Expect = 3e-05
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYV 223
G A+Y++ + + ++LSFQ GD ++ V + + W A L + G+ P +YV
Sbjct: 4 GSGIRIIVVALYDYEAIHHEDLSFQKGDQMV--VLEESGEWWKARSLATRKEGYIPSNYV 61
Query: 224 EPCD 227
D
Sbjct: 62 ARVD 65
Score = 44.3 bits (105), Expect = 4e-05
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 117 DKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW 152
+A Y Y++ DL+F + + + V ++ +WW
Sbjct: 8 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWW 43
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 42.9 bits (101), Expect = 1e-04
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 153 TGTIGDRTARFRGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR 212
+ T+ + A+Y++ SR +LSF+ G+ + + V WLA L
Sbjct: 69 SDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLS 127
Query: 213 -GQTGWFPESYVEPCD 227
GQTG+ P +YV P D
Sbjct: 128 TGQTGYIPSNYVAPSD 143
Score = 37.5 bits (87), Expect = 0.005
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 116 SDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWW 152
++A Y Y+S DL+F + E + + E DWW
Sbjct: 84 GVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWW 121
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Length = 82
Score = 36.1 bits (83), Expect = 0.002
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 174 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW----LAGELRGQTGWFPESYVEP 225
+ +F + + ELS Q G + + + + PGW Q G P S +
Sbjct: 22 VLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTLCI 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.002
Identities = 48/271 (17%), Positives = 80/271 (29%), Gaps = 80/271 (29%)
Query: 65 EEGDLKDTQSSSDGSQDVFCSV---HLQ-LSTKEKDLEVNNSNLDDLKKTLANMMS--DK 118
EE L+D + L L D E + ++ + L N + DK
Sbjct: 171 EE--LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 119 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTARFRGVSEYRRYRAIY-- 176
Y+ + P S P + Q VT K + T G+ + +G + + +
Sbjct: 229 DYLLSIPI-SC-PL-IGVIQLAHYVVTAKLLGF---TPGELRSYLKGATG--HSQGLVTA 280
Query: 177 EFVSRNGDELSFQPGDIIMVPVKQNAEPG-----WLAGELRGQTGWFPESYVEP-----C 226
++ SF + ++ G +R +P + + P
Sbjct: 281 VAIAETDSWESFF----------VSVRKAITVLFFI-G-VRCY-EAYPNTSLPPSILEDS 327
Query: 227 DETGEVVPG---------------------TELPGDKH-HLELIAEVPENISDSGGSGIA 264
E E VP + LP K + L+ N G+
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV-----N-----GAKNL 377
Query: 265 VEEGPGIPADIPSPIMGLGTVVPVKQNAEPG 295
V GP P + GL + K A G
Sbjct: 378 VVSGP------PQSLYGLNLTL-RKAKAPSG 401
Score = 35.4 bits (81), Expect = 0.030
Identities = 37/242 (15%), Positives = 55/242 (22%), Gaps = 117/242 (48%)
Query: 197 PVKQNAEPGWL----AGELR------GQ---TGWFPE------SY---VEP-CDETGEVV 233
P + + G + GQ +F E +Y V + E
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE-- 193
Query: 234 PGTELPGDKHHLELIAEVPENISDSGGSGIAVE---EGPG-IP-----ADIP-S-PIMGL 282
L + + G+ + E P P IP S P++G+
Sbjct: 194 ----------TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 283 G-----TVVPVKQNAEPGWLAGELRGQTG----------------W-------------- 307
V PG L L+G TG W
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 308 ----------FPESYVEP-----CDETGEVVPG---------------------TELPGD 331
+P + + P E E VP + LP
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 332 KH 333
K
Sbjct: 364 KQ 365
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 35.8 bits (82), Expect = 0.003
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 173 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG-WLAGELRGQTGWFPESYVE 224
+A + +ELSF+ G+ I + + G WL RG G+ + VE
Sbjct: 32 KACCDVKGG-KNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVE 83
Score = 26.6 bits (58), Expect = 4.7
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 285 VVPVKQNAEPGWLAGELRGQTGWFPESYVE 314
++ + N E WL RG G+ + VE
Sbjct: 54 IIRITDNPEGKWLGRTARGSYGYIKTTAVE 83
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 38.4 bits (88), Expect = 0.003
Identities = 16/69 (23%), Positives = 21/69 (30%), Gaps = 8/69 (11%)
Query: 162 RFRGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNA---EPGWLAGELR--GQTG 216
R + V + LSF GD+I++ GW G Q G
Sbjct: 572 RSKYVVALQDNPN---PAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRG 628
Query: 217 WFPESYVEP 225
FP V
Sbjct: 629 DFPTDCVYV 637
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 33.6 bits (76), Expect = 0.075
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 11/59 (18%)
Query: 115 MSDKYYI-AAYPYDSTEPGDLTFNQDEVIYVT----------KKENDWWTGTIGDRTAR 162
M D +YI + + + P L F + +V +V W R R
Sbjct: 1 MGDSFYIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLR 59
Score = 32.9 bits (74), Expect = 0.13
Identities = 20/99 (20%), Positives = 26/99 (26%), Gaps = 8/99 (8%)
Query: 165 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 224
G S Y R +E L F GD+ V PG RG G + +
Sbjct: 2 GDSFY--IRTHFELEPSPPSGLGFTRGDVFH--VLDTLHPGPGQSHARG--GHWLAVRMG 55
Query: 225 PCDETGE--VVPGTELPGDKHHLELIAEVPENISDSGGS 261
E ++P LE S
Sbjct: 56 RDLREQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAG 94
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 28.8 bits (64), Expect = 2.3
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 51 QRLKITKDHTIKAKE--EGDLKDTQSSSDGSQDVFCSVHLQLSTKEKDLEVNNSNLDDLK 108
Q LK+ K++ + + E D K + S +D S+ +L E +L+ + L D +
Sbjct: 9 QMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQ 68
Query: 109 KTLAN 113
+ L
Sbjct: 69 EKLEL 73
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB,
N-acetylglucosamine, beta- propeller, sugar binding
protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP:
b.67.1.1 PDB: 3kif_A* 3kih_A*
Length = 236
Score = 28.6 bits (63), Expect = 2.6
Identities = 21/131 (16%), Positives = 39/131 (29%), Gaps = 27/131 (20%)
Query: 111 LANMMSDKYYIAAYPYDSTEPGD----------------LTFNQDEVIYVTKKENDWWTG 154
L + DK+Y YP + + L + +Y + + G
Sbjct: 7 LRGVYQDKFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGVLNDK-IYKG 65
Query: 155 TIGD-------RTARFRGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWL 207
T A+ G + +++ + F NG + + Q+ W+
Sbjct: 66 TPPTHDNDNWMGRAKKIGNGGWNQFQFL--FFDPNGYLYAVSKDKLYKASPPQSDTDNWI 123
Query: 208 AG-ELRGQTGW 217
A G GW
Sbjct: 124 ARATEVGSGGW 134
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription;
1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Length = 232
Score = 28.2 bits (62), Expect = 3.3
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 8/62 (12%)
Query: 143 YVTKKENDWWTGTIGDRTARFRGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNA 202
+ + I D R R+ F+ R D LSF G+ ++
Sbjct: 16 VIITDDQG---RVIDDNNRRRS-----RKRGGENVFLKRISDGLSFGKGESVIFNDNVTE 67
Query: 203 EP 204
Sbjct: 68 TY 69
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A
{Escherichia coli O127}
Length = 236
Score = 28.4 bits (63), Expect = 3.3
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 182 NGDELSFQPGDIIMVPVKQNAEPGWLAG 209
N + PG + + + P A
Sbjct: 186 NKRHVEPPPGSQLWLGFSAHVLPEKYAD 213
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2,
structure initiative; 1.66A {Encephalitozoon cuniculi}
Length = 131
Score = 27.5 bits (61), Expect = 3.6
Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Query: 80 QDVFCSVHLQLSTKEKDLEVNNSNLDDLKKTLANMMSDKYYIAAYPYDSTEPGDLTFNQD 139
++ + +++ K + + I + L + +
Sbjct: 14 NEINIQFPVTGDADSSAIKIRMV-----GKKICVKNQGEIVIDGELLHEVDVSSLWWVIN 68
Query: 140 E---VIYVTKKENDWW 152
+ VTKK N+WW
Sbjct: 69 GDVVDVNVTKKRNEWW 84
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG,
glycosylase, cytosine, hydrolase,lyase/DNA complex; HET:
8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A*
3f10_A* 3f0z_A
Length = 290
Score = 28.0 bits (62), Expect = 4.2
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 146 KKENDWWTGTIGDRTARFRGVSEYRRYRAIYE 177
++EN + G ++ + + E I E
Sbjct: 37 RQENGNYIGIAFEKVVEVQKIGEDVVIYNINE 68
>1m4z_A Origin recognition complex subunit 1; DNA replication,
transcriptional silencing, chromatin, BAH D gene
regulation; 2.20A {Saccharomyces cerevisiae} SCOP:
b.34.12.1 PDB: 1zhi_A 1zbx_A
Length = 238
Score = 27.8 bits (61), Expect = 4.4
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 7/48 (14%)
Query: 157 GDRTARFRGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEP 204
G + R RG ++ R+ D + GD +++ +
Sbjct: 29 GQKRLRRRGAKTEH-------YLKRSSDGIKLGRGDSVVMHNEAAGTY 69
>3u07_A Uncharacterized protein VPA0106; structural genomics, PSI-biology,
protein structure initiati northeast structural genomics
consortium; 2.08A {Vibrio parahaemolyticus}
Length = 443
Score = 28.0 bits (61), Expect = 4.6
Identities = 8/83 (9%), Positives = 25/83 (30%), Gaps = 3/83 (3%)
Query: 111 LANMMSDKYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTARFRGVSEYR 170
+ Y + + D + + + + +++W+ TI R ++
Sbjct: 307 WGLPPIEASYRKSDFDSIGQKLDGSKHDYVMRFKAPNVSEFWSVTIYGNDNRLMAKNDLN 366
Query: 171 RYRAIYEFVSRNGD---ELSFQP 190
R+ + + D +
Sbjct: 367 RHSRGDRTMKADKDGYYTIYMSA 389
>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine
deamidase, deamidati bacterial effector, cell
cycle-protein binding complex; 1.60A {Photorhabdus
luminescens subsp} PDB: 3gqj_A
Length = 261
Score = 27.9 bits (61), Expect = 4.7
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 241 DKHHLELIAEVPENISDSGGSGIAVEEGPGIPADIPSPIMGL 282
++ + ++ E++S+ GG + E P D P+ GL
Sbjct: 37 NRDLANIFEKIDESVSELGGLEMYQEMVGVNPYDPTEPVSGL 78
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase,
antiproliferative protein, transcription; 2.50A {Homo
sapiens} SCOP: c.55.3.9
Length = 252
Score = 27.7 bits (61), Expect = 4.7
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 98 EVNNSNLDDLKKTLANMMSDKYYIAA---YPYDSTEPGDLTFNQDEVIYVTKKENDWWTG 154
EV NLD+ K + ++ Y+A +P P + + Y + N
Sbjct: 4 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLK 63
Query: 155 TIGDRTARFRGVSEYRRYRAIYEF 178
I EY + ++F
Sbjct: 64 IIQLGLTFMNEQGEYPPGTSTWQF 87
>3nsw_A Excretory-secretory protein 2; hookworm, excretory-secretory protei
merohedral twinning, immunomodulator, netrin domain,
immune; HET: EPE; 1.75A {Ancylostoma ceylanicum}
Length = 106
Score = 26.6 bits (58), Expect = 5.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 78 GSQDVFCSVHLQLSTKEKDL 97
G+QD F +H LS KEKDL
Sbjct: 84 GNQDCFVKLHDGLSQKEKDL 103
>3njc_A YSLB protein; NESG, PSI, structural genomics, protein structure
initiative northeast structural genomics consortium,
unknown function; 1.69A {Bacillus subtilis subsp}
Length = 158
Score = 26.9 bits (59), Expect = 6.4
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 177 EFVSRNGDELSFQ-PGDIIMVPVKQNAEP------GWLAGELRGQTGWFPESYVEPCDET 229
VS EL F+ G II +K EP G++A +++ ESY +
Sbjct: 84 TNVSAKKQELEFELEGPIISNRLKHQKEPCFQLEAGFIAEQIQLMNDQIAESYEQVKKRA 143
Query: 230 GEVV 233
+VV
Sbjct: 144 DKVV 147
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 27.6 bits (60), Expect = 8.4
Identities = 32/204 (15%), Positives = 58/204 (28%), Gaps = 13/204 (6%)
Query: 6 ALHHLIGVPLLSVILTAIAPQTIVTPRLMVHGAPLLLRILQNWAHQRLKITKDHTIKAKE 65
AL HL GV L T A + Q + + + + + KE
Sbjct: 299 ALIHLAGVSLGQRRATRRVMGATKEKDKAPTKATTTKLVYQIFDTFFSEQIEKYDKEDKE 358
Query: 66 EGDLKDTQSSSDGSQDVFCSVHLQLSTKEKDLEVNNSNLDDLKKTLANMMSDKYYIAAYP 125
+ + Q C K S LK+ N+
Sbjct: 359 NAMKRRRCGVCEVCQQPECGKCKACKDMVKFGGTGRSKQACLKRRCPNLA---------- 408
Query: 126 YDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTARFRG-VSEYRRYRAIYEFVSRNGD 184
+ + + + KK + + G + R Y+ VS + +
Sbjct: 409 VKEADDDEEADDDVSEMPSPKKLHQGKKKKQNKDRISWLGQPMKIEENRTYYQKVSIDEE 468
Query: 185 ELSFQPGDIIMVPVKQNAEPGWLA 208
+ GD + V +++P +LA
Sbjct: 469 M--LEVGDCVSVIPDDSSKPLYLA 490
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.136 0.416
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,395,209
Number of extensions: 328677
Number of successful extensions: 1431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1076
Number of HSP's successfully gapped: 589
Length of query: 336
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 242
Effective length of database: 4,077,219
Effective search space: 986686998
Effective search space used: 986686998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.3 bits)