BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7082
(528 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 298
Score = 316 bits (809), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 143/294 (48%), Positives = 200/294 (68%), Gaps = 2/294 (0%)
Query: 51 CSYQACHPVKPDHINVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALN 110
Y+ C VKPD +NVH++PH+HDD+GWLKTV++Y+ G + P V+ I+ S +++L
Sbjct: 1 AGYKTCPKVKPDMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLL 60
Query: 111 SNPDRRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASIL 170
+NP RRFI VE FFS WW++Q NAT+++VR+LV GRLEF G W MNDEAT HY +I+
Sbjct: 61 ANPTRRFIYVEIAFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAII 120
Query: 171 DGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDYQDLSKR 230
D +LGLR L ETFG G PRV W IDPFGHS+E AS+FAQMG++GF F R+DYQD R
Sbjct: 121 DQMTLGLRFLEETFGSDGRPRVAWHIDPFGHSREQASLFAQMGFDGFFFGRLDYQDKKVR 180
Query: 231 QKEKGMQMLWEASADLG-KSSHIFTEMINNVYNPPSGFCFDILCHIE-FIDDETSSGYNA 288
+K M+ +W AS L ++ +FT ++ N+YNPP G C+D+LC + ++D S YNA
Sbjct: 181 KKTLQMEQVWRASTSLKPPTADLFTSVLPNMYNPPEGLCWDMLCADKPVVEDTRSPEYNA 240
Query: 289 PYLAKEYLKWVQEQAAQFRSNNIPALFGGDFTYQEAEYYYRSLDKMIKYVNNMQ 342
L + +LK +Q +R+ + G DF Y+ A ++++LDK+I+ VN Q
Sbjct: 241 KELVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENANTWFKNLDKLIQLVNAQQ 294
>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine
Length = 1045
Score = 169 bits (427), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 126/505 (24%), Positives = 206/505 (40%), Gaps = 98/505 (19%)
Query: 49 DTCSYQACHPVKPDHINVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAA 108
D Y A H +K V ++PHSH+D GW++T EEYY H + I+ + +
Sbjct: 71 DPLKYNAHHKLK-----VFVVPHSHNDPGWIQTFEEYYQ--------HDTKHILSNALRH 117
Query: 109 LNSNPDRRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYAS 168
L+ NP+ +FI E +F+ ++ + K ++ +V G+LEF G W M DEA +H+ +
Sbjct: 118 LHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRN 177
Query: 169 ILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDYQDLS 228
+L + G L + P W IDPFGHS M + + G++ + R Y
Sbjct: 178 VLLQLTEGQTWLKQFMNVT--PTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKK 235
Query: 229 KRQKEKGMQMLWEASADLGKSSHIFTEM-------INNVYNPPSGFCFDILCHIEF---- 277
+ +++ ++ LW D + +FT M I + P C C +F
Sbjct: 236 ELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVC----CQFDFKRMG 291
Query: 278 ---------IDDETSSGYNAPYLAKEYLKWVQEQAAQFRSNNIPALFGGDFTY-QEAEYY 327
+ T S N + + +++A +R+N + G DF + Q E+
Sbjct: 292 SFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWD 351
Query: 328 YRSL--DKMIKYVNNMQINGSKVNLLYSTPSCYIKAVHNS----GITLPTKQDDFFPYGS 381
+ + +++ +++N+ V + T Y AVH + PT DFF Y
Sbjct: 352 VQRVNYERLFEHINSQA--HFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYAD 409
Query: 382 GKHAYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIYSEDLSCEPSETWDK 441
YW+G++TSRP KR +R ++ A W +WD
Sbjct: 410 RSDNYWSGYYTSRPYHKRMDRV---LMHYVRAAEMLSAW----------------HSWDG 450
Query: 442 FAINVYNALGRTVNRYVCKQLYVLSNLKXXXXXXXEDDLNVLREAMGVLQHHDGITGTAK 501
A E+ L R + + QHHDGITGTAK
Sbjct: 451 MA-------------------------------RIEERLEQARRELSLFQHHDGITGTAK 479
Query: 502 QHPSNNYAELIHNGLAACEKVANDA 526
H +Y + + L AC+ V +
Sbjct: 480 THVVVDYEQRMQEALKACQMVMQQS 504
>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Deoxymannojirimicin
pdb|1HWW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Swainsonine
Length = 1015
Score = 169 bits (427), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 126/505 (24%), Positives = 206/505 (40%), Gaps = 98/505 (19%)
Query: 49 DTCSYQACHPVKPDHINVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAA 108
D Y A H +K V ++PHSH+D GW++T EEYY H + I+ + +
Sbjct: 41 DPLKYNAHHKLK-----VFVVPHSHNDPGWIQTFEEYYQ--------HDTKHILSNALRH 87
Query: 109 LNSNPDRRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYAS 168
L+ NP+ +FI E +F+ ++ + K ++ +V G+LEF G W M DEA +H+ +
Sbjct: 88 LHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRN 147
Query: 169 ILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDYQDLS 228
+L + G L + P W IDPFGHS M + + G++ + R Y
Sbjct: 148 VLLQLTEGQTWLKQFMNVT--PTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKK 205
Query: 229 KRQKEKGMQMLWEASADLGKSSHIFTEM-------INNVYNPPSGFCFDILCHIEF---- 277
+ +++ ++ LW D + +FT M I + P C C +F
Sbjct: 206 ELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVC----CQFDFKRMG 261
Query: 278 ---------IDDETSSGYNAPYLAKEYLKWVQEQAAQFRSNNIPALFGGDFTY-QEAEYY 327
+ T S N + + +++A +R+N + G DF + Q E+
Sbjct: 262 SFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWD 321
Query: 328 YRSL--DKMIKYVNNMQINGSKVNLLYSTPSCYIKAVHNS----GITLPTKQDDFFPYGS 381
+ + +++ +++N+ V + T Y AVH + PT DFF Y
Sbjct: 322 VQRVNYERLFEHINSQA--HFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYAD 379
Query: 382 GKHAYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIYSEDLSCEPSETWDK 441
YW+G++TSRP KR +R ++ A W +WD
Sbjct: 380 RSDNYWSGYYTSRPYHKRMDRV---LMHYVRAAEMLSAW----------------HSWDG 420
Query: 442 FAINVYNALGRTVNRYVCKQLYVLSNLKXXXXXXXEDDLNVLREAMGVLQHHDGITGTAK 501
A E+ L R + + QHHDGITGTAK
Sbjct: 421 MA-------------------------------RIEERLEQARRELSLFQHHDGITGTAK 449
Query: 502 QHPSNNYAELIHNGLAACEKVANDA 526
H +Y + + L AC+ V +
Sbjct: 450 THVVVDYEQRMQEALKACQMVMQQS 474
>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol
Length = 1045
Score = 168 bits (426), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 126/505 (24%), Positives = 206/505 (40%), Gaps = 98/505 (19%)
Query: 49 DTCSYQACHPVKPDHINVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAA 108
D Y A H +K V ++PHSH+D GW++T EEYY H + I+ + +
Sbjct: 71 DPLKYNAHHKLK-----VFVVPHSHNDPGWIQTFEEYYQ--------HDTKHILSNALRH 117
Query: 109 LNSNPDRRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYAS 168
L+ NP+ +FI E +F+ ++ + K ++ +V G+LEF G W M DEA +H+ +
Sbjct: 118 LHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRN 177
Query: 169 ILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDYQDLS 228
+L + G L + P W IDPFGHS M + + G++ + R Y
Sbjct: 178 VLLQLTEGQTWLKQFMNVT--PTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKK 235
Query: 229 KRQKEKGMQMLWEASADLGKSSHIFTEM-------INNVYNPPSGFCFDILCHIEF---- 277
+ +++ ++ LW D + +FT M I + P C C +F
Sbjct: 236 ELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVC----CQFDFKRMG 291
Query: 278 ---------IDDETSSGYNAPYLAKEYLKWVQEQAAQFRSNNIPALFGGDFTY-QEAEYY 327
+ T S N + + +++A +R+N + G DF + Q E+
Sbjct: 292 SFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWD 351
Query: 328 YRSL--DKMIKYVNNMQINGSKVNLLYSTPSCYIKAVHNS----GITLPTKQDDFFPYGS 381
+ + +++ +++N+ V + T Y AVH + PT DFF Y
Sbjct: 352 VQRVNYERLFEHINSQA--HFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYAD 409
Query: 382 GKHAYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIYSEDLSCEPSETWDK 441
YW+G++TSRP KR +R ++ A W +WD
Sbjct: 410 RSDNYWSGYYTSRPYHKRMDRV---LMHYVRAAEMLSAW----------------HSWDG 450
Query: 442 FAINVYNALGRTVNRYVCKQLYVLSNLKXXXXXXXEDDLNVLREAMGVLQHHDGITGTAK 501
A E+ L R + + QHHDGITGTAK
Sbjct: 451 MA-------------------------------RIEERLEQARRELSLFQHHDGITGTAK 479
Query: 502 QHPSNNYAELIHNGLAACEKVANDA 526
H +Y + + L AC+ V +
Sbjct: 480 THVVVDYEQRMQEALKACQMVMQQS 504
>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex
With 5- Fluoro-Gulosyl-Fluoride
pdb|1R33|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
5-Thio-D-Mannopyranosylamine
pdb|1R34|A Chain A, Golgi Alpha-Mannosidase Ii Complex With 5-Thio-D-
Mannopyranosylamidinium Salt
pdb|1TQS|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Salacinol
pdb|1TQT|A Chain A, Golgi Alpha-mannosidase Ii In Complex With A Diastereomer
Of Salacinol
pdb|1TQU|A Chain A, Golgi Alpha-mannosidase Ii In Complex With The Salacinol
Analog Ghavamiol
pdb|1TQV|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Seleno-Salacinol (Blintol)
pdb|1TQW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With A Diastereomer
Of Seleno- Salacinol
pdb|2ALW|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Noeuromycin
pdb|2F7O|A Chain A, Golgi Alpha-mannosidase Ii Complex With Mannostatin A
pdb|2F7P|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Benzyl-Mannostatin
A
pdb|2F18|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1A|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1s)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1B|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s,5r)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)-5-Methylpyrrolidine-
3,4-Diol
pdb|2F7Q|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Aminocyclopentitetrol
pdb|2F7R|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Benzyl-Aminocyclopentitetrol
pdb|2FYV|A Chain A, Golgi Alpha-Mannosidase Ii Complex With An Amino-Salacinol
Carboxylate Analog
pdb|2OW6|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(1r,5s,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-5,7,8-Triol Chloride
pdb|2OW7|A Chain A, Golgi Alpha-Mannosidase Ii Complex With (1r,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-7,8-Diol Chloride
pdb|3BLB|A Chain A, Crystal Structure Of Golgi Mannosidase Ii In Complex With
Swainsonine At 1.3 Angstrom Resolution
pdb|3BUB|A Chain A, Golgi Alpha-mannosidase Ii With An Empty Active Site
pdb|3DDF|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Pyrrolidin-2-One
pdb|3DDG|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Methylpyrrolidin-2-One
pdb|3D4Y|A Chain A, Golgi Mannosidase Ii Complex With Mannoimidazole
pdb|3D4Z|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Imidazole
pdb|3D50|A Chain A, Golgi Mannosidase Ii Complex With
N-Octyl-6-Epi-Valienamine
pdb|3D51|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Hydroxyiminolactam
pdb|3D52|A Chain A, Golgi Mannosidase Ii Complex With An N-Aryl Carbamate
Derivative Of Gluco-Hydroxyiminolactam
pdb|3DX0|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin A
At Ph 5.75
pdb|3DX1|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1s,2s, 3r,4r)-4-Aminocyclopentane-1,2,3-Triol
pdb|3DX2|A Chain A, Golgi Mannosidase Ii Complex With Mannostatin B
pdb|3DX4|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3r,4s,5r)-4-amino-5-methoxycyclopentane-1,2,3-triol
pdb|3EJP|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(Phenyl)ethyl]-Swainsonine
pdb|3EJQ|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substitued
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(4-Methylphenyl)ethyl]-Swainsonine
pdb|3EJR|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substitued
Swainsonine Analog:
(5r)-5-[2'-oxo-2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJS|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substituted
Swainsonine Analog:
(5s)-5-[2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJT|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5r)-5-[2'-(4-Tert-Butylphenyl)ethyl]-Swainsonine
pdb|3EJU|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5s)-5-[2'-Oxo-2'-(4-Tert-Butylphenyl)ethyl]-
Swainsonine
Length = 1045
Score = 168 bits (426), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 126/505 (24%), Positives = 206/505 (40%), Gaps = 98/505 (19%)
Query: 49 DTCSYQACHPVKPDHINVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAA 108
D Y A H +K V ++PHSH+D GW++T EEYY H + I+ + +
Sbjct: 71 DPLKYNAHHKLK-----VFVVPHSHNDPGWIQTFEEYYQ--------HDTKHILSNALRH 117
Query: 109 LNSNPDRRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYAS 168
L+ NP+ +FI E +F+ ++ + K ++ +V G+LEF G W M DEA +H+ +
Sbjct: 118 LHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRN 177
Query: 169 ILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDYQDLS 228
+L + G L + P W IDPFGHS M + + G++ + R Y
Sbjct: 178 VLLQLTEGQTWLKQFMNVT--PTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKK 235
Query: 229 KRQKEKGMQMLWEASADLGKSSHIFTEM-------INNVYNPPSGFCFDILCHIEF---- 277
+ +++ ++ LW D + +FT M I + P C C +F
Sbjct: 236 ELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVC----CQFDFKRMG 291
Query: 278 ---------IDDETSSGYNAPYLAKEYLKWVQEQAAQFRSNNIPALFGGDFTY-QEAEYY 327
+ T S N + + +++A +R+N + G DF + Q E+
Sbjct: 292 SFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWD 351
Query: 328 YRSL--DKMIKYVNNMQINGSKVNLLYSTPSCYIKAVHNS----GITLPTKQDDFFPYGS 381
+ + +++ +++N+ V + T Y AVH + PT DFF Y
Sbjct: 352 VQRVNYERLFEHINSQA--HFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYAD 409
Query: 382 GKHAYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIYSEDLSCEPSETWDK 441
YW+G++TSRP KR +R ++ A W +WD
Sbjct: 410 RSDNYWSGYYTSRPYHKRMDRV---LMHYVRAAEMLSAW----------------HSWDG 450
Query: 442 FAINVYNALGRTVNRYVCKQLYVLSNLKXXXXXXXEDDLNVLREAMGVLQHHDGITGTAK 501
A E+ L R + + QHHDGITGTAK
Sbjct: 451 MA-------------------------------RIEERLEQARRELSLFQHHDGITGTAK 479
Query: 502 QHPSNNYAELIHNGLAACEKVANDA 526
H +Y + + L AC+ V +
Sbjct: 480 THVVVDYEQRMQEALKACQMVMQQS 504
>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
5-F-Guloside
pdb|1QX1|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
2-F-Mannosyl-F
pdb|3BUP|A Chain A, Golgi Alpha-Mannosidase Ii D341n Acid-Base Catalyst Mutant
With Bound Mannose
Length = 1045
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 125/505 (24%), Positives = 206/505 (40%), Gaps = 98/505 (19%)
Query: 49 DTCSYQACHPVKPDHINVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAA 108
D Y A H +K V ++PHSH+D GW++T EEYY H + I+ + +
Sbjct: 71 DPLKYNAHHKLK-----VFVVPHSHNDPGWIQTFEEYYQ--------HDTKHILSNALRH 117
Query: 109 LNSNPDRRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYAS 168
L+ NP+ +FI E +F+ ++ + K ++ +V G+LEF G W M DEA +H+ +
Sbjct: 118 LHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRN 177
Query: 169 ILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDYQDLS 228
+L + G L + P W IDPFGHS M + + G++ + R Y
Sbjct: 178 VLLQLTEGQTWLKQFMNVT--PTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKK 235
Query: 229 KRQKEKGMQMLWEASADLGKSSHIFTEM-------INNVYNPPSGFCFDILCHIEF---- 277
+ +++ ++ LW D + +FT M I + P C C +F
Sbjct: 236 ELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVC----CQFDFKRMG 291
Query: 278 ---------IDDETSSGYNAPYLAKEYLKWVQEQAAQFRSNNIPALFGGDFTY-QEAEYY 327
+ T S N + + +++A +R+N + G +F + Q E+
Sbjct: 292 SFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDNFRFKQNTEWD 351
Query: 328 YRSL--DKMIKYVNNMQINGSKVNLLYSTPSCYIKAVHNS----GITLPTKQDDFFPYGS 381
+ + +++ +++N+ V + T Y AVH + PT DFF Y
Sbjct: 352 VQRVNYERLFEHINSQA--HFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYAD 409
Query: 382 GKHAYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIYSEDLSCEPSETWDK 441
YW+G++TSRP KR +R ++ A W +WD
Sbjct: 410 RSDNYWSGYYTSRPYHKRMDRV---LMHYVRAAEMLSAW----------------HSWDG 450
Query: 442 FAINVYNALGRTVNRYVCKQLYVLSNLKXXXXXXXEDDLNVLREAMGVLQHHDGITGTAK 501
A E+ L R + + QHHDGITGTAK
Sbjct: 451 MA-------------------------------RIEERLEQARRELSLFQHHDGITGTAK 479
Query: 502 QHPSNNYAELIHNGLAACEKVANDA 526
H +Y + + L AC+ V +
Sbjct: 480 THVVVDYEQRMQEALKACQMVMQQS 504
>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With 3alpha,6alpha-Mannopentaose
pdb|3CZN|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant) In
Complex With Gnman5gn
pdb|3CZS|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant)
pdb|3BUD|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
With An Empty Active Site
pdb|3BUI|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Tris
pdb|3BUQ|A Chain A, Golgi Alpha-Mannosidase Ii D204a Catalytic Nucleophile
Mutant With Bound Mannose.
pdb|3BVT|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
(Alpha-D-Mannopyranosyl)-(1->3)-S-Alpha-D-
Mannopyranoside
pdb|3BVU|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With
Methyl(Alpha-D-Mannopyranosyl)-(1->3)-S-[(Alpha-D-
Mannopyranosyl)-(1- >6)]-Alpha-D-Mannopyranoside
pdb|3BVV|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
Alpha-D-Mannopyranosyl-(1->3)-[6-Thio-
Alpha-D-Mannopyranosyl-(1->6)]-Beta-D-Mannopyranoside
pdb|3BVW|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-Alpha-D-Mannopyranosyl- (1->3)-
[alpha-D-Mannopyranosyl-(1->6)-6-Thio-Alpha-D-
Mannopyranosyl- (1->6)]-Beta-D-Mannopyranoside
pdb|3BVX|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-(Alpha-D-Mannopyranosyl)- (1->3)-
[(Alpha-D-Mannopyranosyl)-(1->6)-(Alpha-D-
Mannopyranosyl)- (1->6)]-Beta-D-Mannopyranoside
Length = 1045
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 125/505 (24%), Positives = 205/505 (40%), Gaps = 98/505 (19%)
Query: 49 DTCSYQACHPVKPDHINVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAA 108
D Y A H +K V ++PHSH+D GW++T EEYY H + I+ + +
Sbjct: 71 DPLKYNAHHKLK-----VFVVPHSHNDPGWIQTFEEYYQ--------HDTKHILSNALRH 117
Query: 109 LNSNPDRRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYAS 168
L+ NP+ +FI E +F+ ++ + K ++ +V G+LEF G W M DEA +H+ +
Sbjct: 118 LHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRN 177
Query: 169 ILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDYQDLS 228
+L + G L + P W I PFGHS M + + G++ + R Y
Sbjct: 178 VLLQLTEGQTWLKQFMNVT--PTASWAIAPFGHSPTMPYILQKSGFKNMLIQRTHYSVKK 235
Query: 229 KRQKEKGMQMLWEASADLGKSSHIFTEM-------INNVYNPPSGFCFDILCHIEF---- 277
+ +++ ++ LW D + +FT M I + P C C +F
Sbjct: 236 ELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVC----CQFDFKRMG 291
Query: 278 ---------IDDETSSGYNAPYLAKEYLKWVQEQAAQFRSNNIPALFGGDFTY-QEAEYY 327
+ T S N + + +++A +R+N + G DF + Q E+
Sbjct: 292 SFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWD 351
Query: 328 YRSL--DKMIKYVNNMQINGSKVNLLYSTPSCYIKAVHNS----GITLPTKQDDFFPYGS 381
+ + +++ +++N+ V + T Y AVH + PT DFF Y
Sbjct: 352 VQRVNYERLFEHINSQA--HFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYAD 409
Query: 382 GKHAYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIYSEDLSCEPSETWDK 441
YW+G++TSRP KR +R ++ A W +WD
Sbjct: 410 RSDNYWSGYYTSRPYHKRMDRV---LMHYVRAAEMLSAW----------------HSWDG 450
Query: 442 FAINVYNALGRTVNRYVCKQLYVLSNLKXXXXXXXEDDLNVLREAMGVLQHHDGITGTAK 501
A E+ L R + + QHHDGITGTAK
Sbjct: 451 MA-------------------------------RIEERLEQARRELSLFQHHDGITGTAK 479
Query: 502 QHPSNNYAELIHNGLAACEKVANDA 526
H +Y + + L AC+ V +
Sbjct: 480 THVVVDYEQRMQEALKACQMVMQQS 504
>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii
Length = 1015
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 125/505 (24%), Positives = 205/505 (40%), Gaps = 98/505 (19%)
Query: 49 DTCSYQACHPVKPDHINVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAA 108
D Y A H +K V ++PHSH+D GW++T EEYY H + I+ + +
Sbjct: 41 DPLKYNAHHKLK-----VFVVPHSHNDPGWIQTFEEYYQ--------HDTKHILSNALRH 87
Query: 109 LNSNPDRRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYAS 168
L+ NP+ +FI E +F+ ++ + K + +V G+LEF G W DEA +H+ +
Sbjct: 88 LHDNPEXKFIWAEISYFARFYHDLGENKKLQXKSIVKNGQLEFVTGGWVXPDEANSHWRN 147
Query: 169 ILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDYQDLS 228
+L + G L + F P W IDPFGHS + + G++ + R Y
Sbjct: 148 VLLQLTEGQTWLKQ-FXNV-TPTASWAIDPFGHSPTXPYILQKSGFKNMLIQRTHYSVKK 205
Query: 229 KRQKEKGMQMLWEASADLGKSSHIFTEM-------INNVYNPPSGFCFDILCHIEF---- 277
+ +++ ++ LW D + +FT I + P C C +F
Sbjct: 206 ELAQQRQLEFLWRQIWDNKGDTALFTHXXPFYSYDIPHTCGPDPKVC----CQFDFKRXG 261
Query: 278 ---------IDDETSSGYNAPYLAKEYLKWVQEQAAQFRSNNIPALFGGDFTY-QEAEYY 327
+ T S N + + +++A +R+N + G DF + Q E+
Sbjct: 262 SFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWD 321
Query: 328 YRSL--DKMIKYVNNMQINGSKVNLLYSTPSCYIKAVHNS----GITLPTKQDDFFPYGS 381
+ + +++ +++N+ V + T Y AVH + PT DFF Y
Sbjct: 322 VQRVNYERLFEHINSQA--HFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYAD 379
Query: 382 GKHAYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIYSEDLSCEPSETWDK 441
YW+G++TSRP KR +R + ++ +E LS +WD
Sbjct: 380 RSDNYWSGYYTSRPYHKRXDRVLXHYVRA-----------------AEXLSA--WHSWDG 420
Query: 442 FAINVYNALGRTVNRYVCKQLYVLSNLKXXXXXXXEDDLNVLREAMGVLQHHDGITGTAK 501
A E+ L R + + QHHDGITGTAK
Sbjct: 421 MA-------------------------------RIEERLEQARRELSLFQHHDGITGTAK 449
Query: 502 QHPSNNYAELIHNGLAACEKVANDA 526
H +Y + L AC+ V +
Sbjct: 450 THVVVDYEQRXQEALKACQXVXQQS 474
>pdb|1O7D|B Chain B, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 84
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 347 KVNLLYSTPSCYIKAVHNSGITLPTKQDDFFPYGSGKHAYWTGFFTSRPALKRYERFGHN 406
+VN+LYSTP+CY+ ++ + ++ K+DDFFPY G + +WTG+F+SRPALKRYER +N
Sbjct: 2 RVNVLYSTPACYLWELNKANLSWSVKKDDFFPYADGPYMFWTGYFSSRPALKRYERLSYN 61
Query: 407 MLQESNE 413
LQ N+
Sbjct: 62 FLQVCNQ 68
>pdb|1O7D|C Chain C, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 159
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 483 LREAMGVLQHHDGITGTAKQHPSNNYAELIHNGLAACEKVANDAF 527
L EAM VLQHHD ++GT++QH +N+YA + G CE + ++A
Sbjct: 6 LNEAMAVLQHHDAVSGTSRQHVANDYARQLSEGWRPCEVLMSNAL 50
>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino(
Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6-
Difluoro-Phenyl)-Amide)
Length = 349
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 115 RRFIQVETGFFSMWWKEQNNATKEMVRKLV 144
RR + E F S WW E + K++VRKL+
Sbjct: 261 RRILNCEYYFISPWWDEVSLNAKDLVRKLI 290
>pdb|2WYH|A Chain A, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase
pdb|2WYH|B Chain B, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase
pdb|2WYI|A Chain A, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase Complexed With Swainsonine
pdb|2WYI|B Chain B, Structure Of The Streptococcus Pyogenes Family Gh38 Alpha-
Mannosidase Complexed With Swainsonine
Length = 923
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 64/160 (40%), Gaps = 20/160 (12%)
Query: 66 VHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSNPDRRFIQV--ETG 123
VHII HSH D W E+++ + +I + ++PD + +T
Sbjct: 28 VHIISHSHWDREWYMAYEQHHM---------RLINLIDDLLEVFQTDPDFHSFHLDGQTI 78
Query: 124 FFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRLLNET 183
+ K + E +R+ + +G+L G + + D+ S + +G E
Sbjct: 79 ILDDYLKVRPEREPE-IRQAIASGKLRI-GPFYILQDDFLTSSESNVRNMLIG----KED 132
Query: 184 FGRCG--VPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSR 221
R G VP +G+ D FG+ + + + G + F R
Sbjct: 133 CDRWGASVP-LGYFPDTFGNMGQTPQLMLKAGLQAAAFGR 171
>pdb|1GZS|B Chain B, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|D Chain D, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 165
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 360 KAVHNSGITLPTKQDDFFPYGSGKHAYWTGFFTSRPALKRYERFGHNMLQESN 412
+A N+G+ TK D F P G+G + + T +S A +Y R N Q+++
Sbjct: 71 EAAKNAGLPGTTKNDVFTPSGAGANPFITPLISS--ANSKYPRMFINQHQQAS 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,688,332
Number of Sequences: 62578
Number of extensions: 727967
Number of successful extensions: 1550
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1504
Number of HSP's gapped (non-prelim): 30
length of query: 528
length of database: 14,973,337
effective HSP length: 103
effective length of query: 425
effective length of database: 8,527,803
effective search space: 3624316275
effective search space used: 3624316275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)