Query psy7082
Match_columns 528
No_of_seqs 204 out of 1015
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 17:40:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1959|consensus 100.0 3E-119 6E-124 968.4 38.6 429 49-528 22-451 (996)
2 PLN02701 alpha-mannosidase 100.0 4E-99 9E-104 868.5 41.9 410 57-527 33-485 (1050)
3 KOG1958|consensus 100.0 4.1E-86 8.9E-91 713.5 31.6 416 57-527 155-599 (1129)
4 PRK09819 alpha-mannosidase; Pr 100.0 2.8E-78 6E-83 696.0 37.4 366 63-527 3-371 (875)
5 PF01074 Glyco_hydro_38: Glyco 100.0 9.1E-64 2E-68 505.5 25.3 274 65-380 1-275 (275)
6 KOG4342|consensus 100.0 2.4E-63 5.1E-68 519.5 26.8 366 61-527 278-649 (1078)
7 COG0383 AMS1 Alpha-mannosidase 100.0 7.7E-39 1.7E-43 366.4 7.4 340 65-527 199-544 (943)
8 COG0383 AMS1 Alpha-mannosidase 99.9 1.5E-27 3.3E-32 273.7 -2.5 362 63-515 3-390 (943)
9 PF09261 Alpha-mann_mid: Alpha 99.9 2.9E-23 6.3E-28 171.6 5.5 78 385-512 1-80 (80)
10 smart00872 Alpha-mann_mid Alph 99.9 8.5E-22 1.8E-26 162.4 7.4 77 386-512 1-79 (79)
11 PF03065 Glyco_hydro_57: Glyco 98.8 1.8E-08 3.9E-13 106.1 11.2 122 98-222 28-196 (360)
12 COG1543 Uncharacterized conser 97.4 0.00029 6.3E-09 74.8 7.3 93 125-220 114-207 (504)
13 TIGR03212 uraD_N-term-dom puta 96.4 1.3 2.9E-05 45.6 23.2 111 98-223 75-187 (297)
14 PF01522 Polysacc_deac_1: Poly 96.1 0.054 1.2E-06 47.2 10.1 104 99-216 17-122 (123)
15 TIGR02884 spore_pdaA delta-lac 94.0 0.62 1.4E-05 45.8 11.4 102 103-217 53-156 (224)
16 TIGR03006 pepcterm_polyde poly 93.8 1.1 2.3E-05 45.6 12.9 111 97-220 25-139 (265)
17 TIGR02764 spore_ybaN_pdaB poly 93.6 1.5 3.3E-05 41.7 13.0 101 103-217 22-124 (191)
18 TIGR02873 spore_ylxY probable 91.3 3.6 7.8E-05 41.8 12.9 102 101-216 99-202 (268)
19 COG1449 Alpha-amylase/alpha-ma 90.7 4.6 0.0001 45.8 14.3 97 117-216 162-262 (615)
20 PRK14582 pgaB outer membrane N 86.3 39 0.00083 38.9 17.8 81 138-222 168-276 (671)
21 PRK14581 hmsF outer membrane N 85.4 4.5 9.8E-05 46.3 9.8 83 137-223 167-277 (672)
22 PRK15394 4-deoxy-4-formamido-L 76.7 97 0.0021 32.0 17.4 80 138-222 92-175 (296)
23 PF08672 APC2: Anaphase promot 67.6 5.6 0.00012 31.0 2.8 22 135-156 37-58 (60)
24 cd06811 PLPDE_III_yhfX_like Ty 60.5 41 0.0009 35.8 8.8 88 124-225 2-89 (382)
25 PF06044 DRP: Dam-replacing fa 59.0 16 0.00036 36.3 4.9 100 50-156 135-250 (254)
26 TIGR03826 YvyF flagellar opero 50.7 18 0.00038 33.1 3.5 50 98-154 28-77 (137)
27 COG0726 CDA1 Predicted xylanas 43.1 2.1E+02 0.0046 27.5 10.2 101 101-215 79-181 (267)
28 PF01479 S4: S4 domain; Inter 40.5 39 0.00085 24.3 3.4 37 125-162 3-41 (48)
29 PRK10148 hypothetical protein; 36.8 12 0.00027 34.2 0.2 17 190-206 123-139 (147)
30 TIGR02988 YaaA_near_RecF S4 do 31.9 60 0.0013 24.6 3.3 43 123-166 9-53 (59)
31 PF12395 DUF3658: Protein of u 30.5 1E+02 0.0022 26.9 4.9 68 65-159 40-107 (111)
32 PHA03393 odv-e66 occlusion-der 27.1 1.4E+02 0.003 34.4 6.4 109 77-209 54-174 (682)
33 cd01841 NnaC_like NnaC (CMP-Ne 24.0 3.1E+02 0.0067 24.8 7.3 47 305-354 49-97 (174)
34 PRK12465 xylose isomerase; Pro 23.6 71 0.0015 34.5 3.1 68 287-360 86-155 (445)
35 PF07023 DUF1315: Protein of u 21.5 80 0.0017 26.9 2.4 23 127-149 3-25 (93)
36 PRK04517 hypothetical protein; 20.8 90 0.002 30.6 3.1 23 124-146 193-215 (216)
37 PRK01904 hypothetical protein; 20.1 1E+02 0.0022 30.3 3.3 23 124-146 195-217 (219)
38 cd01833 XynB_like SGNH_hydrola 20.1 2.5E+02 0.0055 24.9 5.8 46 306-354 39-86 (157)
No 1
>KOG1959|consensus
Probab=100.00 E-value=2.6e-119 Score=968.38 Aligned_cols=429 Identities=54% Similarity=1.005 Sum_probs=415.7
Q ss_pred CcccccccCCCCCCceEEEEeecccCCccccchhHHheecCCCCCchhhHHHHHHHHHHHHhcCCCCcEEEecchHHHHH
Q psy7082 49 DTCSYQACHPVKPDHINVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSNPDRRFIQVETGFFSMW 128 (528)
Q Consensus 49 ~~~~~~~~~~~~~~~~~VhlV~HSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vl~~L~~~p~~kF~~~E~~~l~~W 128 (528)
..|+|++||...++|++||+|||||+|+||++|+||||++.++.|++++|++|+|+||++|.+||++||+++|++||.+|
T Consensus 22 ~~~~y~t~~~~~~~~invHlVPHSHDDVGWLKTVDQyy~G~~n~Iq~AgVqyIldSVV~eLl~dp~RRFI~VE~aFF~rW 101 (996)
T KOG1959|consen 22 SRAGYNTCHKVVPNMINVHLVPHSHDDVGWLKTVDQYYYGSKNKIQHAGVQYILDSVVEELLKDPNRRFIYVETAFFARW 101 (996)
T ss_pred HhhccCCCccccCceeEEEecCCccCccceeeeehhheecCCcccchhhHHHHHHHHHHHHhcCCccceehhhHHHHHHH
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhChHHHHHHHHHHHCCCeEEeccccccccCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCceeEecCCCCCchHHHHH
Q psy7082 129 WKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASM 208 (528)
Q Consensus 129 ~~~~~p~~~~~vk~LV~~GrlE~vGGgwv~~De~l~s~EslIrql~~G~~~l~~~FG~~~~p~v~w~pD~FGhs~~lPqI 208 (528)
|.+++++.++.||+||++|||||+||||+|+|||.+||.++|+|++.|++||+++||.|.+|++||||||||||+.+|.|
T Consensus 102 W~~qS~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrPrvgWqIDPFGHSreqAsl 181 (996)
T KOG1959|consen 102 WNEQSETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFGECGRPRVGWQIDPFGHSREQASL 181 (996)
T ss_pred HHhcCHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhcccCCcceeeeeCCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEEecchhhhhhhhcCCcceEEEEecCCCCCCceeEEeeccCcCCCCCCCccccccccc-ccCCCCCcCCC
Q psy7082 209 FAQMGYEGFMFSRMDYQDLSKRQKEKGMQMLWEASADLGKSSHIFTEMINNVYNPPSGFCFDILCHIE-FIDDETSSGYN 287 (528)
Q Consensus 209 l~~~Gi~~~v~~Ri~~~~~~~~~~~~~~eF~W~g~d~~~~gs~Ilth~l~~~Y~~~~~~~~d~~~~~~-~~d~~~~~~~n 287 (528)
|++|||++.+|+||++++|..|..++.+||+|+|++++++.++|||++|+++|++|++||||+.|.+. ++|++.++++|
T Consensus 182 fAqmGfd~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~~~~iFTg~l~n~Y~~P~gfc~dv~c~d~Pi~D~~~~~d~N 261 (996)
T KOG1959|consen 182 FAQMGFDGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGSSSQIFTGALYNHYSPPPGFCFDVLCGDDPIIDGPRSYDYN 261 (996)
T ss_pred HHHhCccchheeecchhhHHHHHhhccceEEeecCccccchhhhhhhccccCCCCCCCceeccccCCCCCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999888999999999999999999999999876 89998899999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCceeEeecCCCCccchHHHHHHHHHHHHHHHhcccCCCcceEEEcChHHHHHHHHhcCC
Q psy7082 288 APYLAKEYLKWVQEQAAQFRSNNIPALFGGDFTYQEAEYYYRSLDKMIKYVNNMQINGSKVNLLYSTPSCYIKAVHNSGI 367 (528)
Q Consensus 288 ~~~~~~~~~~~~~~~a~~~~t~~iL~~~G~Df~~~~a~~~~~~l~~li~~~N~~~~~~~~~~v~~ST~~~Yf~al~~~~~ 367 (528)
++++++.|++.++.++..|+|||||+|||+||+|++|..||+|||+||+|+|++++++..+++.||||++|++++++.+.
T Consensus 262 VkerVd~Fv~~a~~~a~~~RtnHim~~MG~DFqY~~A~v~fknmDkLI~yVN~~qa~gs~vnv~YSTpscYl~alh~~~~ 341 (996)
T KOG1959|consen 262 VKERVDDFVAYAKNQAAYYRTNHIMWPMGDDFQYENANVWFKNMDKLIKYVNERQADGSKVNVFYSTPSCYLNALHAANQ 341 (996)
T ss_pred HHHHHHHHHHHHHHhHhheecceEEEeccCCceehhhhHHHhhHHHHHHHhhhhhcCCceEEEEEcChHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999998876778999999999999999999999
Q ss_pred CCCccccccccCCCCCCCcccceeecchHHHHHHHHHHHhHHhhhhhhhcCCCCCCCCcccccCCCCCCcchhhHHHhhh
Q psy7082 368 TLPTKQDDFFPYGSGKHAYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIYSEDLSCEPSETWDKFAINVY 447 (528)
Q Consensus 368 ~lpv~~GDf~py~~~~~~ywtG~yTSR~~lK~~nR~~e~~L~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 447 (528)
.||+++.|||||++++|.||||||||||.+|++.|++...|+
T Consensus 342 Twp~Kt~DFFPYa~~~~syWTGyFTSRPa~Kr~~R~~s~~lq-------------------------------------- 383 (996)
T KOG1959|consen 342 TWPVKTDDFFPYASEPHSYWTGYFTSRPALKRFERDGSHYLQ-------------------------------------- 383 (996)
T ss_pred cccccccccCcCCCCCCcceeeeccccHHHHHHHhhhhHHHH--------------------------------------
Confidence 999999999999999999999999999999999999999999
Q ss_pred hhcccchhhhhHHHHHHHhhhccCCCCCchhHHHHHHHHHHhhhccCCCCCCCCccchhHHHHHHHHHHHHHHHHHHhhh
Q psy7082 448 NALGRTVNRYVCKQLYVLSNLKSHSSHHHEDDLNVLREAMGVLQHHDGITGTAKQHPSNNYAELIHNGLAACEKVANDAF 527 (528)
Q Consensus 448 ~~~~~~~~~~~~e~L~~~a~~~~~~~~~~~~~l~~~w~~l~~~qhHDaItGTs~~~V~~d~~~rl~~~~~~~~~~~~~al 527 (528)
+|++|.++|++.+... ...++.++++|++.|||||||||++++|.+||.+||..|+..|++++++||
T Consensus 384 ----------~akQL~~la~l~~~~~---~~dl~~Lream~i~QHHDAVTGTekq~Va~DY~r~La~g~~~~e~~~~~aL 450 (996)
T KOG1959|consen 384 ----------VAKQLSVLAGLSSTEQ---GPDLDYLREAMAIMQHHDAVTGTEKQHVADDYARRLADGILGAEKLARDAL 450 (996)
T ss_pred ----------HHHHHhhhcCCCcccc---CccHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999998865332 578999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy7082 528 Q 528 (528)
Q Consensus 528 ~ 528 (528)
+
T Consensus 451 ~ 451 (996)
T KOG1959|consen 451 R 451 (996)
T ss_pred H
Confidence 3
No 2
>PLN02701 alpha-mannosidase
Probab=100.00 E-value=4e-99 Score=868.50 Aligned_cols=410 Identities=31% Similarity=0.625 Sum_probs=370.1
Q ss_pred CCCCCCceEEEEeecccCCccccchhHHheecCCCCCchhhHHHHHHHHHHHHhcCCCCcEEEecchHHHHHHhhhChHH
Q psy7082 57 HPVKPDHINVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSNPDRRFIQVETGFFSMWWKEQNNAT 136 (528)
Q Consensus 57 ~~~~~~~~~VhlV~HSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vl~~L~~~p~~kF~~~E~~~l~~W~~~~~p~~ 136 (528)
..+++++++||||||||||+||+||++|||. +.++.||++||+.|++||++||+|+|++||++||++++|++
T Consensus 33 ~~~~~~~l~VhlVpHSH~D~gWl~T~~eyy~--------~~~~~ild~vv~~L~~dp~rkFi~~E~~fl~~Ww~~~~pe~ 104 (1050)
T PLN02701 33 DEWDREKLKVFVVPHSHNDPGWILTVEEYYQ--------EQSRHILDTIVESLSKDPRRKFIWEEMSYLERWWRDASPSK 104 (1050)
T ss_pred cccCCcceEEEEeCCCCCCHHHcCcHHHHHH--------HHHHHHHHHHHHHHHhCcCcceeeccHHHHHHHHHhcCHHH
Confidence 6788899999999999999999999999986 46899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCeEEeccccccccCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCceeEecCCCCCchHHHHHHHhcCCce
Q psy7082 137 KEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEG 216 (528)
Q Consensus 137 ~~~vk~LV~~GrlE~vGGgwv~~De~l~s~EslIrql~~G~~~l~~~FG~~~~p~v~w~pD~FGhs~~lPqIl~~~Gi~~ 216 (528)
+++||+||++||||||||||||+|||++++|++||||++|++|++++|| +.|++||+|||||||++|||||++|||++
T Consensus 105 ~~~vk~LV~~GrLE~vgGgwvm~DEa~~~~esiI~Ql~~G~~~l~~~fG--~~P~~~W~iDpFGhs~~~P~Ll~~~G~~~ 182 (1050)
T PLN02701 105 KEAFTKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIG--VAPKNSWAIDPFGYSSTMAYLLRRMGFEN 182 (1050)
T ss_pred HHHHHHHHHcCCEEEECCceecccccccCHHHHHHHHHhhhHHHHhhcC--CCCCcCccCCCCCCCHHHHHHHHhCCCce
Confidence 9999999999999999999999999999999999999999999999999 78999999999999999999999999999
Q ss_pred EEEEecchhhhhhhhcCCcceEEEEecCCCCCCceeEEeeccC-c------CCCCCCCc--cccc---------cccccc
Q psy7082 217 FMFSRMDYQDLSKRQKEKGMQMLWEASADLGKSSHIFTEMINN-V------YNPPSGFC--FDIL---------CHIEFI 278 (528)
Q Consensus 217 ~v~~Ri~~~~~~~~~~~~~~eF~W~g~d~~~~gs~Ilth~l~~-~------Y~~~~~~~--~d~~---------~~~~~~ 278 (528)
++|+|++++++..+..++.+||+|++++++..|++||||++|. + |+++++|| ||+. |++. .
T Consensus 183 ~~~~R~~y~~k~~~~~~~~~eF~W~~s~~~~dgs~Ift~~lp~y~Y~~p~~~~p~p~~c~~Fd~~~~~~~~~~~cp~~-~ 261 (1050)
T PLN02701 183 MLIQRTHYEVKKELAQNKNLEYIWRQSWDAEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARMRGFQYELCPWG-K 261 (1050)
T ss_pred EEEeccchHHHHHHhhcCCceEEEeCCCCCCCCCEEEEEEccccccCcccccCCCcccccccccccccccccccCccc-C
Confidence 9999999999999998999999999865555589999999993 4 45778898 7765 3321 1
Q ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHhhcCCCceeEeecCCCCc---cchHHHHHHHHHHHHHHHhcccCCCcceEEEcCh
Q psy7082 279 DDETSSGYNAPYLAKEYLKWVQEQAAQFRSNNIPALFGGDFTY---QEAEYYYRSLDKMIKYVNNMQINGSKVNLLYSTP 355 (528)
Q Consensus 279 d~~~~~~~n~~~~~~~~~~~~~~~a~~~~t~~iL~~~G~Df~~---~~a~~~~~~l~~li~~~N~~~~~~~~~~v~~ST~ 355 (528)
++..++++|++++++.|++++++++..|+++++|+|+|+||.| .+++.+|+|++++|+++|+++ ...++++||||
T Consensus 262 ~p~~~~~~nv~~r~~~~~~~~~~~s~~~rtn~iL~p~GdDf~~~~~~~a~~~f~n~dkli~~iN~~~--~~~~~i~~ST~ 339 (1050)
T PLN02701 262 HPVETNDENVQERAMKLLDQYRKKSTLYRTNTLLVPLGDDFRYISIDEAEAQFRNYQKLFDYINSNP--SLKAEVKFGTL 339 (1050)
T ss_pred CccccchhHHHHHHHHHHHHHHHhhccccCCeEEEecCCCCCCcchhHHHHHHHhHHHHHHHHhhCc--ccCceEEECCH
Confidence 2234667899999999999999999899999999999999999 578889999999999999975 24699999999
Q ss_pred HHHHHHHHhcC----------------CCCCccccccccCCCCCCCcccceeecchHHHHHHHHHHHhHHhhhhhhhcCC
Q psy7082 356 SCYIKAVHNSG----------------ITLPTKQDDFFPYGSGKHAYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQP 419 (528)
Q Consensus 356 ~~Yf~al~~~~----------------~~lpv~~GDf~py~~~~~~ywtG~yTSR~~lK~~nR~~e~~L~~ae~~~~~~~ 419 (528)
++||+++++.. ..||++.||||||+++.++||||||||||.+|+++|.+|++|+.
T Consensus 340 ~~Yf~~l~~~~~~~~~~~~ge~~~~~~~~~p~~~gDff~Ya~~~~~yWTGyyTSRp~lK~~~R~~e~~L~~--------- 410 (1050)
T PLN02701 340 EDYFSTLRDEADRINYSRPGEVGSGEVPGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRA--------- 410 (1050)
T ss_pred HHHHHHHHhhhccccccccccccccccCCCceecccccccccccccccceeeecHHHHHHHHHHHHHHHHH---------
Confidence 99999999753 57999999999999999999999999999999999999999994
Q ss_pred CCCCCCcccccCCCCCCcchhhHHHhhhhhcccchhhhhHHHHHHHhhh-----ccCCCCCc-hhHHHHHHHHHHhhhcc
Q psy7082 420 WLSPSSIYSEDLSCEPSETWDKFAINVYNALGRTVNRYVCKQLYVLSNL-----KSHSSHHH-EDDLNVLREAMGVLQHH 493 (528)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~L~~~a~~-----~~~~~~~~-~~~l~~~w~~l~~~qhH 493 (528)
+|+|+++|.. .+..+|.. .+.|+.+||+|+++|||
T Consensus 411 ---------------------------------------aE~L~sla~~~~~~~~~~~~~~~~~~~L~~~wk~l~~~QhH 451 (1050)
T PLN02701 411 ---------------------------------------AEILFSFLLGYCRRFQCEKLPTSFSYKLTAARRNLALFQHH 451 (1050)
T ss_pred ---------------------------------------HHHHHHHHhhhhhhccccCCChhhHHHHHHHHHHHHhhccC
Confidence 5666666432 23334411 37789999999999999
Q ss_pred CCCCCCCCccchhHHHHHHHHHHHHHHHHHHhhh
Q psy7082 494 DGITGTAKQHPSNNYAELIHNGLAACEKVANDAF 527 (528)
Q Consensus 494 DaItGTs~~~V~~d~~~rl~~~~~~~~~~~~~al 527 (528)
|+|||||+++|++||..||.++++.++.++++||
T Consensus 452 DaItGTsk~~V~~Dy~~rl~~~~~~~~~~~~~al 485 (1050)
T PLN02701 452 DGVTGTAKDHVVVDYGTRMHTSLQDLQIFMSAAV 485 (1050)
T ss_pred cCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887
No 3
>KOG1958|consensus
Probab=100.00 E-value=4.1e-86 Score=713.53 Aligned_cols=416 Identities=31% Similarity=0.605 Sum_probs=365.1
Q ss_pred CCCCCCc-eEEEEeecccCCccccchhHHheecCCCCCchhhHHHHHHHHHHHHhcCCCCcEEEecchHHHHHHhhhChH
Q psy7082 57 HPVKPDH-INVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSNPDRRFIQVETGFFSMWWKEQNNA 135 (528)
Q Consensus 57 ~~~~~~~-~~VhlV~HSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vl~~L~~~p~~kF~~~E~~~l~~W~~~~~p~ 135 (528)
..++..+ ++|.||||||.|+||++||++||+. ..++||++++.-|.++|+++|+|+|++||.+||...+|+
T Consensus 155 ~~~~~~~~LkvfVvPHSHnDPGW~~Tf~~Yy~~--------~tr~Il~~~v~~L~e~~~~~FIwaEiS~~~~ww~~~~~~ 226 (1129)
T KOG1958|consen 155 KKWDKEPFLKVFVVPHSHNDPGWIKTFEEYYQR--------QTRHILNNMVNKLSEDPRMKFIWAEISFLERWWDDASPT 226 (1129)
T ss_pred hhcccccceEEEEeeccCCCcchhhhHHHHHHH--------HHHHHHHHHHHHhhhCcccchhhhhHHHHHHhhhhcChH
Confidence 3445444 9999999999999999999999974 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCeEEeccccccccCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCceeEecCCCCCchHHHHHHHhcCCc
Q psy7082 136 TKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYE 215 (528)
Q Consensus 136 ~~~~vk~LV~~GrlE~vGGgwv~~De~l~s~EslIrql~~G~~~l~~~FG~~~~p~v~w~pD~FGhs~~lPqIl~~~Gi~ 215 (528)
.++++|.||++||||||+|||||||||.+|+-++|+|+..||+|++...| +.|+++|.+||||||++||.||+.+|++
T Consensus 227 kk~a~k~lv~~GqlEIvtGGWVMpDEAn~Hy~~~i~qliEGh~Wl~~~ig--v~P~s~WaiDPFG~S~TmpYLL~~ag~~ 304 (1129)
T KOG1958|consen 227 KKNAVKRLVKNGQLEIVTGGWVMPDEANSHYFAMIDQLIEGHQWLKNNIG--VTPQSGWAIDPFGYSSTMPYLLRRAGFE 304 (1129)
T ss_pred HHHHHHHHHhcCcEEEEeCccccCcccchhHHHHHHHHhhhhhHHhccCC--CCCCcccccCCCCCCcchHHHHhhcCch
Confidence 99999999999999999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred eEEEEecchhhhhhhhcCCcceEEEEecCCCCCCceeEEeeccC-cCC------CCCCCc--ccc--------ccccccc
Q psy7082 216 GFMFSRMDYQDLSKRQKEKGMQMLWEASADLGKSSHIFTEMINN-VYN------PPSGFC--FDI--------LCHIEFI 278 (528)
Q Consensus 216 ~~v~~Ri~~~~~~~~~~~~~~eF~W~g~d~~~~gs~Ilth~l~~-~Y~------~~~~~~--~d~--------~~~~~~~ 278 (528)
+++++|+|+..|..+...+.+||+||..++..+.+.||||+||. +|. +.+.+| ||+ .|++. +
T Consensus 305 ~mlIQRvHYavKk~lA~qk~leF~WRQ~wds~~~tDl~tHmMPFysYDIphTCGPdP~ICCqFDFkRmpg~~~~Cpw~-v 383 (1129)
T KOG1958|consen 305 NMLIQRVHYAVKKELAQQKSLEFIWRQYWDSTGDTDLLTHMMPFYSYDIPHTCGPDPKICCQFDFKRMPGGGCECPWG-V 383 (1129)
T ss_pred hHHHHHHHHHHHHHHHHhcccceeehhhccCCCCcchheeecccccccCCCccCCCCceeeeeecccCCCCCcCCCCC-C
Confidence 99999999999999999999999999999877679999999997 775 334455 553 35554 2
Q ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHhhcCCCceeEeecCCCCccchHHH---HHHHHHHHHHHHhcccCCCcceEEEcCh
Q psy7082 279 DDETSSGYNAPYLAKEYLKWVQEQAAQFRSNNIPALFGGDFTYQEAEYY---YRSLDKMIKYVNNMQINGSKVNLLYSTP 355 (528)
Q Consensus 279 d~~~~~~~n~~~~~~~~~~~~~~~a~~~~t~~iL~~~G~Df~~~~a~~~---~~~l~~li~~~N~~~~~~~~~~v~~ST~ 355 (528)
.+..+++.|++++++.+++++++.+..|++|.+|+|.|+||+|....+| |.|+.++++++|+++ ..+++++|+|+
T Consensus 384 pP~~It~~NVa~rA~~LldQyrKkS~Lfr~nVlLiPlGDDFRy~~~~Ewd~Q~~NY~~LFD~iNs~~--~~nv~aqFGTl 461 (1129)
T KOG1958|consen 384 PPEKITDANVAARAELLLDQYRKKSELFRTNVLLIPLGDDFRYDKITEWDQQFDNYQKLFDHINSRP--LLNVQAQFGTL 461 (1129)
T ss_pred CCeeechhhHHHHHHHHHHHHHHHhhhcccceEEEecCCccccCccHHHHHHHHHHHHHHHHHhccc--ccceeeecCCH
Confidence 3446778899999999999999999999999999999999999866554 889999999999986 57899999999
Q ss_pred HHHHHHHHhc------C-CCCCccccccccCCCCCCCcccceeecchHHHHHHHHHHHhHHhhhhhhhcCCCCCCCCccc
Q psy7082 356 SCYIKAVHNS------G-ITLPTKQDDFFPYGSGKHAYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIYS 428 (528)
Q Consensus 356 ~~Yf~al~~~------~-~~lpv~~GDf~py~~~~~~ywtG~yTSR~~lK~~nR~~e~~L~~ae~~~~~~~~~~~~~~~~ 428 (528)
+|||++|++. + ..+|++.||||+|+++..+||+|||||||..|++-|.+|+.|++||-++.
T Consensus 462 sDYF~al~k~~~e~~kg~~~FPtlSGDFFtYaDr~d~YWSGYyTSRPFyK~ldRvLeh~lR~AEIl~s------------ 529 (1129)
T KOG1958|consen 462 SDYFDALDKAYSERGKGQEPFPTLSGDFFTYADRDDHYWSGYYTSRPFYKRLDRVLEHYLRSAEILFS------------ 529 (1129)
T ss_pred HHHHHHHHHhhccccCCCCCCcccccCceeeecccCccceeeeecchHHHHHHHHHHHHHhhHHHHHH------------
Confidence 9999999875 1 23699999999999999999999999999999999999999999885431
Q ss_pred ccCCCCCCcchhhHHHhhhhhcccchhhhhHHHHH-HHhhhccCCCCCchhHHHHHHHHHHhhhccCCCCCCCCccchhH
Q psy7082 429 EDLSCEPSETWDKFAINVYNALGRTVNRYVCKQLY-VLSNLKSHSSHHHEDDLNVLREAMGVLQHHDGITGTAKQHPSNN 507 (528)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~L~-~~a~~~~~~~~~~~~~l~~~w~~l~~~qhHDaItGTs~~~V~~d 507 (528)
+| .+...- -++.... ... -..|..|+++|++.||||||||||+++|..|
T Consensus 530 -------------~a--------------~~~~~r~~~~~r~~-~~~--~~~L~~ARRnL~LFQHHDaITGTaK~~Vv~D 579 (1129)
T KOG1958|consen 530 -------------LA--------------LAHAHRVGLAQRIE-ESN--YELLTAARRNLGLFQHHDAITGTAKDAVVVD 579 (1129)
T ss_pred -------------HH--------------HHHHHHhhhhhhcc-hhH--HHHHHHHHHhhhhhhcccccccccchhhhhh
Confidence 00 011100 0110000 011 2679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy7082 508 YAELIHNGLAACEKVANDAF 527 (528)
Q Consensus 508 ~~~rl~~~~~~~~~~~~~al 527 (528)
|.+||..+++.++.++++|+
T Consensus 580 Yg~rl~~Sl~~~~~v~~~~~ 599 (1129)
T KOG1958|consen 580 YGQRLHESLVNLQIVLENAL 599 (1129)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999886
No 4
>PRK09819 alpha-mannosidase; Provisional
Probab=100.00 E-value=2.8e-78 Score=695.99 Aligned_cols=366 Identities=18% Similarity=0.234 Sum_probs=318.1
Q ss_pred ceEEEEeecccCCccccchhHHheecCCCCCchhhHHHHHHHHHHHHhcCCCCcEEE-e-cchHHHHHHhhhChHHHHHH
Q psy7082 63 HINVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSNPDRRFIQ-V-ETGFFSMWWKEQNNATKEMV 140 (528)
Q Consensus 63 ~~~VhlV~HSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vl~~L~~~p~~kF~~-~-E~~~l~~W~~~~~p~~~~~v 140 (528)
+++||+|||||||++||||++++.. ++.++|+++|++|+++|+++|.+ + |++++++|| +.+|+++++|
T Consensus 3 ~~~v~~v~HtH~D~~Wl~~~~~~~~---------~~~~~~~~vl~lle~~p~~~f~~~d~q~~~l~~~~-~~~Pe~~~~i 72 (875)
T PRK09819 3 KSKVHIVPHMHWDREWYFTTERSRI---------LLVNNMEEILDRLEQDNDYKYYVLDGQTSLLEDYL-AVKPEDKERV 72 (875)
T ss_pred ceEEEEeCCCCCChhhcCChHHhHH---------HHHHHHHHHHHHHHhCCCcceEEEchhHHHHHHHH-HhChHHHHHH
Confidence 3689999999999999999999874 67899999999999999999754 3 888887765 7899999999
Q ss_pred HHHHHCCCeEEeccccccccCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCceeEecCCCCCchHHHHHHHhcCCceEEEE
Q psy7082 141 RKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFS 220 (528)
Q Consensus 141 k~LV~~GrlE~vGGgwv~~De~l~s~EslIrql~~G~~~l~~~FG~~~~p~v~w~pD~FGhs~~lPqIl~~~Gi~~~v~~ 220 (528)
|+||++||| ++||||||+|++++||||+||||++|++|+ ++|| ..|++||+|||||||++|||||+++||+++++|
T Consensus 73 k~lV~~Grl-~~G~W~v~~D~~l~sgEsliRqll~G~~~~-~~fG--~~~~vgwlpD~FG~s~~lPqIl~~~Gi~~~~~w 148 (875)
T PRK09819 73 KKLVQAGKL-IIGPWYTQTDQLVVSGESIVRNLLYGIRDC-REFG--EPMKIGYLPDSFGQSGQMPQIYNGFGITRTLFW 148 (875)
T ss_pred HHHHHcCCE-eECcEEeecccccCCHHHHHHHHHHHHHHH-HHcC--CCCceeeecCCCCCcHHHHHHHHhCCCCeEEEE
Confidence 999999999 789988999999999999999999999999 7999 789999999999999999999999999999999
Q ss_pred ecchhhhhhhhcCCcceEEEEecCCCCCCceeEEeeccCcCCCCCCCcccccccccccCCCCCcCCCHHHHHHHHHHHHH
Q psy7082 221 RMDYQDLSKRQKEKGMQMLWEASADLGKSSHIFTEMINNVYNPPSGFCFDILCHIEFIDDETSSGYNAPYLAKEYLKWVQ 300 (528)
Q Consensus 221 Ri~~~~~~~~~~~~~~eF~W~g~d~~~~gs~Ilth~l~~~Y~~~~~~~~d~~~~~~~~d~~~~~~~n~~~~~~~~~~~~~ 300 (528)
|+..+.. ..++.+|+|+|+| ||+||||+++.+|+.+..+. ....+++++++.+++.++
T Consensus 149 r~~~~~~----~~~~~~F~W~g~D----Gs~V~t~~~~~~Y~~g~~~~--------------~~~~~~~~~~~~~~~~~~ 206 (875)
T PRK09819 149 RGVSDRH----GTDKTEFLWQSDD----GSEVLAQQLPLGYAIGKYLP--------------EDEEELKKRLDEYFGVLE 206 (875)
T ss_pred ecccccc----cCCCceEEEECCC----CCeEEEEECccccccCCCCC--------------cCHHHHHHHHHHHHHHHh
Confidence 9753321 1246699999999 89999999999997654221 113356677777666555
Q ss_pred HHHhhcCCCceeEeecCCCCccchHHHHHHHHHHHHHHHhcccCCCcceEEEcChHHHHHHHHhcCCCCCcccccccc-C
Q psy7082 301 EQAAQFRSNNIPALFGGDFTYQEAEYYYRSLDKMIKYVNNMQINGSKVNLLYSTPSCYIKAVHNSGITLPTKQDDFFP-Y 379 (528)
Q Consensus 301 ~~a~~~~t~~iL~~~G~Df~~~~a~~~~~~l~~li~~~N~~~~~~~~~~v~~ST~~~Yf~al~~~~~~lpv~~GDf~p-y 379 (528)
+. ..++++|+|+|+|+.+. .++|.++|+.+|+.. +.+++++||+++||+++++....||+++|||++ +
T Consensus 207 ~~---~~~~~~l~~~G~d~~p~-----~~~~~e~i~~~~~~~---~~~~~~~st~~~yf~~l~~~~~~lp~~~GEl~~~~ 275 (875)
T PRK09819 207 KK---SSTKNILLPNGHDQMPL-----QKNLFEVMDKLNEIY---PEREFVISRFENVFEKLEKQRDNLPTLKGEFIDGK 275 (875)
T ss_pred hc---CCCCcEEEecCCCCCcc-----cccHHHHHHHHHhhC---CCCcEEECCHHHHHHHHHhhcCCCCeeeeecCCCc
Confidence 44 47899999999999763 356888889999875 578999999999999999887889999999984 2
Q ss_pred CCCCCCcccceeecchHHHHHHHHHHHhHHhhhhhhhcCCCCCCCCcccccCCCCCCcchhhHHHhhhhhcccchhhhhH
Q psy7082 380 GSGKHAYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIYSEDLSCEPSETWDKFAINVYNALGRTVNRYVC 459 (528)
Q Consensus 380 ~~~~~~ywtG~yTSR~~lK~~nR~~e~~L~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 459 (528)
.. ++|+||||||+++|++||++|++|.+ ++
T Consensus 276 y~---~~HrG~~TSr~~iK~~nr~~E~~L~~-----------------------------------------------~~ 305 (875)
T PRK09819 276 YM---RVHRSIFSTRMDIKIANARIENKIVN-----------------------------------------------VL 305 (875)
T ss_pred cc---cccCCccccHHHHHHHHHHHHHHHHH-----------------------------------------------Hh
Confidence 22 45699999999999999999999973 47
Q ss_pred HHHHHHhhhccCCCCCchhHHHHHHHHHHhhhccCCCCCCCCccchhHHHHHHHHHHHHHHHHHHhhh
Q psy7082 460 KQLYVLSNLKSHSSHHHEDDLNVLREAMGVLQHHDGITGTAKQHPSNNYAELIHNGLAACEKVANDAF 527 (528)
Q Consensus 460 e~L~~~a~~~~~~~~~~~~~l~~~w~~l~~~qhHDaItGTs~~~V~~d~~~rl~~~~~~~~~~~~~al 527 (528)
|+|.++|...|..|| .+.|+++||.|+.+||||+|||||+++|++|+..|+.++.+.++.+++.++
T Consensus 306 E~l~~la~~~g~~yp--~~~l~~~Wk~ll~nq~HD~i~G~sid~V~~d~~~r~~~~~~~~~~l~~~~l 371 (875)
T PRK09819 306 EPLASIAYSLGFEYP--HGLLEKIWKEMFKNHAHDSIGCCCSDTVHRDIVARYKLAEDLADNLLDFYM 371 (875)
T ss_pred chHHHHHHHcCCCCC--HHHHHHHHHHHHHhcCCCcccccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887776676 589999999999999999999999999999999999999999999998876
No 5
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=9.1e-64 Score=505.54 Aligned_cols=274 Identities=31% Similarity=0.511 Sum_probs=217.7
Q ss_pred EEEEeecccCCccccchhHHheecCCCCCchhhHHHHHHHHHHHHhcCCCCcEEEecchHHHHHHhhhChHHHHHHHHHH
Q psy7082 65 NVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSNPDRRFIQVETGFFSMWWKEQNNATKEMVRKLV 144 (528)
Q Consensus 65 ~VhlV~HSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vl~~L~~~p~~kF~~~E~~~l~~W~~~~~p~~~~~vk~LV 144 (528)
+||||||||||+||++|+++|. .++.++|+++++.|+++|+++|+++|++++++| .+..|+.++++|+||
T Consensus 1 ~v~~i~HsH~D~~W~~t~~~~~---------~~~~~~~~~~l~~l~~~~~~~f~~~~~~~~~~~-~~~~p~~~~~~~~lv 70 (275)
T PF01074_consen 1 TVHVIPHSHWDRGWLWTFEEYR---------RYLVNILDSVLDLLEEDPDFRFIDGQTAYLEDY-LEDAPEEFKRIKKLV 70 (275)
T ss_dssp EEEEEEEEB--SSSSS-HHHHH---------HHHHHHHHHHHHHHHH-TT--EECTBCHHHHHH-HHCSGHHHHHHHHHH
T ss_pred CEEEccccccchhhcccHHHHH---------HHHHHHHHHHHHHHHhCCcceEeechhHHHHHH-HHhCCHHHHHHHHHH
Confidence 6999999999999999999995 478999999999999999999999999988775 455999999999999
Q ss_pred HCCCeEEeccccccccCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCceeEecCCCCCchHHHHHHHhcCCceEEEEecch
Q psy7082 145 NTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDY 224 (528)
Q Consensus 145 ~~GrlE~vGGgwv~~De~l~s~EslIrql~~G~~~l~~~FG~~~~p~v~w~pD~FGhs~~lPqIl~~~Gi~~~v~~Ri~~ 224 (528)
++||||+|||||||+|++++++|++||||++|++|++++|| ..|++||+||+|||++++||||+++||++++++|+++
T Consensus 71 ~~Gri~~vgg~~~~~D~~l~~~Eslirql~~G~~~~~~~fg--~~~~~~~~~D~FG~~~~lP~il~~~Gi~~~v~~r~~~ 148 (275)
T PF01074_consen 71 KEGRIEIVGGWYVQPDENLPSGESLIRQLLYGHKYLRKEFG--VRPKVAWQPDSFGHSAQLPQILKQFGIKYFVIWRISW 148 (275)
T ss_dssp HTTSEEESSSBSS-B-SSSS-HHHHHHHHHHHHHHHHHHHT--G--SEEEESSSSSB-TCHHHHHHTTT-SEEEESSS-H
T ss_pred HhceeEEeCceeeeccccCCCHHHHHHHHhhhHHHHHHhcC--CCCCeEEeCCCCCCchhhHHHHhccCcceEEEecccc
Confidence 99999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCcceEEEEecCCCCCCceeEEeeccCcCCCCCCCcccccccccccCCCCCcCCCHHHHHHHHHHHHHHHHh
Q psy7082 225 QDLSKRQKEKGMQMLWEASADLGKSSHIFTEMINNVYNPPSGFCFDILCHIEFIDDETSSGYNAPYLAKEYLKWVQEQAA 304 (528)
Q Consensus 225 ~~~~~~~~~~~~eF~W~g~d~~~~gs~Ilth~l~~~Y~~~~~~~~d~~~~~~~~d~~~~~~~n~~~~~~~~~~~~~~~a~ 304 (528)
+.++.++..+..+|+|+|+| ||+||||+++.+|..+. .|. +. +.++.+++.+++.++
T Consensus 149 ~~~~~~~~~~~~~F~W~g~d----Gs~ilt~~~~~~y~~~~-~~~-----------------~~-~~~~~~~~~~~~~~~ 205 (275)
T PF01074_consen 149 NDKNPFKANPQSEFYWQGPD----GSEILTHVLPNYYYGPW-YGS-----------------EF-EDADELLEQLRKLAK 205 (275)
T ss_dssp HHHHHHHHTTSSEEEEE-TT----STEEEEEE-TST-TSHH-TTC-----------------CH-HHHHHHHHHHHHHHC
T ss_pred ccccccccCCCceEEEecCC----CcceeEEecccCCCCCC-CCc-----------------cc-ccHHHHHHHHHHHHH
Confidence 99998877788999999999 89999999999877621 110 11 356778888899988
Q ss_pred hcCCCceeEeecCCCCccchHHHHHHHHHHHHHHHhcccCCCcceEEEcChHHHHHHHHhcCCCCCcc-ccccccCC
Q psy7082 305 QFRSNNIPALFGGDFTYQEAEYYYRSLDKMIKYVNNMQINGSKVNLLYSTPSCYIKAVHNSGITLPTK-QDDFFPYG 380 (528)
Q Consensus 305 ~~~t~~iL~~~G~Df~~~~a~~~~~~l~~li~~~N~~~~~~~~~~v~~ST~~~Yf~al~~~~~~lpv~-~GDf~py~ 380 (528)
.+.++++|+++|+|.. .....+.+.+.|+.+|+.. ..+++++||+++||++++++ .++|+. +|||+||+
T Consensus 206 ~~~~~~~l~~~G~d~~---~~~~~~~~~~~i~~~~~~~---~~~~i~~sT~~~yf~~l~~~-~~~p~~~~~df~~Y~ 275 (275)
T PF01074_consen 206 KYYTNNILIPYGDDDD---GGPPDEELIEYINEWNEEY---PGPKIKYSTLSEYFEALEKE-SELPVHYHGDFPPYA 275 (275)
T ss_dssp CSSSSEEEEEEEEEHH---HHHHHHHHHHHHHHHHHHG---CTEEEEE--HHHHHHHHHHC---B-EE-ES-B-S-E
T ss_pred hcCCCceEEEeecCCC---CCCcHHHHHHHHHHhcccC---CCeEEEECCHHHHHHHHHhc-cCCCcccCCCCCCCC
Confidence 9999999999998811 1123445555566666654 79999999999999999998 999999 99999974
No 6
>KOG4342|consensus
Probab=100.00 E-value=2.4e-63 Score=519.46 Aligned_cols=366 Identities=20% Similarity=0.313 Sum_probs=310.3
Q ss_pred CCceEEEEeecccCCccccchhHHheecCCCCCchhhHHHHHHHHHHHHhcCCCCcEEEecchHHHHHHhhhChHHHHHH
Q psy7082 61 PDHINVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSNPDRRFIQVETGFFSMWWKEQNNATKEMV 140 (528)
Q Consensus 61 ~~~~~VhlV~HSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vl~~L~~~p~~kF~~~E~~~l~~W~~~~~p~~~~~v 140 (528)
++.-+||.|+|+|+|.+|+|||.|+++ ++.+...+.+.+|+.+|+|+|+.+|.. -.+|+++.+|+.++++
T Consensus 278 es~~nv~aiGhCHIDTAWLWPFaETrR---------KivRSW~tq~~lMdR~PEy~FvcSQAq-Q~~WlkedhP~~f~kl 347 (1078)
T KOG4342|consen 278 ESQHNVHAIGHCHIDTAWLWPFAETRR---------KIVRSWVTQLQLMDRNPEYIFVCSQAQ-QLEWLKEDHPGLFSKL 347 (1078)
T ss_pred ccccceeeeccccccchhhcChHHHHH---------HHHHHHHHHHhHHhhCcceeEehhhHH-HHHHHhhhChhHHHHH
Confidence 456799999999999999999999985 688999999999999999999999744 6689999999999999
Q ss_pred HHHHHCCCeEEeccccccccCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCceeEecCCCCCchHHHHHHHhcCCceEEEE
Q psy7082 141 RKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFS 220 (528)
Q Consensus 141 k~LV~~GrlE~vGGgwv~~De~l~s~EslIrql~~G~~~l~~~FG~~~~p~v~w~pD~FGhs~~lPqIl~~~Gi~~~v~~ 220 (528)
++.+.+||+-.|||.||++|.|+|+|||+|||++.|++|+.++|| ...++-|+||+||+|+|||||.+.+||+.|.++
T Consensus 348 ~e~~~q~qF~pvGGtWVE~DtNiPsGEslvRQFl~GQ~FFlkeFG--~~c~~FWLPDTFGYSsQ~PQicrlcGidrFLTQ 425 (1078)
T KOG4342|consen 348 QEFACQGQFVPVGGTWVEMDTNIPSGESLVRQFLQGQNFFLKEFG--KMCSEFWLPDTFGYSSQLPQICRLCGIDRFLTQ 425 (1078)
T ss_pred HHHHhcCceeeccceEEecCCCCCChHHHHHHHHhhhhHHHHHhh--hhhcceeccccccccchhhHHHHhhcHHHHHHh
Confidence 999999999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred ecchhhhhhhhcCCcceEEEEecCCCCCCceeEEeeccC-cCCCCCCCcccccccccccCCCCCcCCCHHHHHHHHHHHH
Q psy7082 221 RMDYQDLSKRQKEKGMQMLWEASADLGKSSHIFTEMINN-VYNPPSGFCFDILCHIEFIDDETSSGYNAPYLAKEYLKWV 299 (528)
Q Consensus 221 Ri~~~~~~~~~~~~~~eF~W~g~d~~~~gs~Ilth~l~~-~Y~~~~~~~~d~~~~~~~~d~~~~~~~n~~~~~~~~~~~~ 299 (528)
+++|+..|.||+. .|.|.|.| ||+|++|+.|. .|.... ++ ++.+..+
T Consensus 426 KLSWNniNSFPhs---TFnW~glD----GSqvl~HmPPgntYtad~---------------------~v----~dVL~tv 473 (1078)
T KOG4342|consen 426 KLSWNNINSFPHS---TFNWEGLD----GSQVLVHMPPGNTYTADG---------------------SV----EDVLKTV 473 (1078)
T ss_pred hccccccCcCCcc---ceeeeecc----CceEEEecCCCCcccccC---------------------cH----HHHHHHH
Confidence 9999999999865 99999999 89999999774 666432 22 2233333
Q ss_pred HHHHhhcCCCceeEeec-CCCCccchHHHHHHHHHHHHHHHhcccCCCcceEEEc-ChHHHHHHHHhc---CCCCCcccc
Q psy7082 300 QEQAAQFRSNNIPALFG-GDFTYQEAEYYYRSLDKMIKYVNNMQINGSKVNLLYS-TPSCYIKAVHNS---GITLPTKQD 374 (528)
Q Consensus 300 ~~~a~~~~t~~iL~~~G-~Df~~~~a~~~~~~l~~li~~~N~~~~~~~~~~v~~S-T~~~Yf~al~~~---~~~lpv~~G 374 (528)
.+..+.-+.++=|+.+| ||-.....+++...|.+ |+.+|... +..|+++.+ |+++||+++.+. +..||+|.|
T Consensus 474 ~qnk~~~~~~~gl~lfG~GDGGGGPT~eML~klrR-~r~~~Nt~--G~lP~vqlg~tvdeffd~ilkrtnqg~~LptW~G 550 (1078)
T KOG4342|consen 474 AQNKDKGRANHGLFLFGFGDGGGGPTQEMLDKLRR-IRSLSNTD--GVLPRVQLGITVDEFFDAILKRTNQGHDLPTWVG 550 (1078)
T ss_pred HhcCCccccCcceEEEEecCCCCCCcHHHHHHHHH-hhcccccC--CcccceeecCCHHHHHHHHHhhhccCCcccccch
Confidence 43333334455555555 23332333445555543 34455432 468999999 999999999875 567999999
Q ss_pred ccccCCCCCCCcccceeecchHHHHHHHHHHHhHHhhhhhhhcCCCCCCCCcccccCCCCCCcchhhHHHhhhhhcccch
Q psy7082 375 DFFPYGSGKHAYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIYSEDLSCEPSETWDKFAINVYNALGRTV 454 (528)
Q Consensus 375 Df~py~~~~~~ywtG~yTSR~~lK~~nR~~e~~L~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 454 (528)
|+|. ++|+|+|||++.+|+++|.+|..|+++|
T Consensus 551 ELyf------EfHrGTYTtqAq~KKlmR~~Ei~LHD~E------------------------------------------ 582 (1078)
T KOG4342|consen 551 ELYF------EFHRGTYTTQAQIKKLMRECEIILHDVE------------------------------------------ 582 (1078)
T ss_pred heEE------EEecCceeeHHHHHHHHHHHHHHhhhHH------------------------------------------
Confidence 9998 8999999999999999999999999755
Q ss_pred hhhhHHHHHHHhhhccCCCCCchhHHHHHHHHHHhhhccCCCCCCCCccchhHHHHHHHHHHHHHHHHHHhhh
Q psy7082 455 NRYVCKQLYVLSNLKSHSSHHHEDDLNVLREAMGVLQHHDGITGTAKQHPSNNYAELIHNGLAACEKVANDAF 527 (528)
Q Consensus 455 ~~~~~e~L~~~a~~~~~~~~~~~~~l~~~w~~l~~~qhHDaItGTs~~~V~~d~~~rl~~~~~~~~~~~~~al 527 (528)
.++++|...+..|.||...|+++|+.++++||||.+||+|++.||+|.+-.+.++...++.+++.|.
T Consensus 583 ------~~sslas~~s~dy~YP~~qlq~LWr~~LLcQFHDVlpGSCIeMVykeA~p~~~~v~k~~~tLl~~a~ 649 (1078)
T KOG4342|consen 583 ------LLSSLASARSADYLYPAAQLQHLWRLLLLCQFHDVLPGSCIEMVYKEAMPHYEDVRKHGNTLLSAAA 649 (1078)
T ss_pred ------HHHHHHHhhcccccCcHHHHHHHHHHHHHHHhcccCCcHHHHHHHHhhhhHHHHHHHhhHHHHHHHH
Confidence 4455555555556677899999999999999999999999999999999999999999999999875
No 7
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.7e-39 Score=366.36 Aligned_cols=340 Identities=17% Similarity=0.261 Sum_probs=270.8
Q ss_pred EEEEeecccCCccccchhHHheecCCCCCchhhHHHHHHHHHHHHhcCCCCcEEEecchHHHHHHhhhChHHHHHHHHHH
Q psy7082 65 NVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSNPDRRFIQVETGFFSMWWKEQNNATKEMVRKLV 144 (528)
Q Consensus 65 ~VhlV~HSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vl~~L~~~p~~kF~~~E~~~l~~W~~~~~p~~~~~vk~LV 144 (528)
+|+.++|+|+|..|+|++++..+ +..+...+++..|+..|.++|..+. ..++.|+++..|+..++ ++|
T Consensus 199 ~I~~~ghahid~aWlw~l~et~r---------~a~ts~~~~~~l~D~~p~~~~~~s~-~~~y~~l~~d~p~l~~~--~~v 266 (943)
T COG0383 199 EIPAVGHAHIDTAWLWPLDETER---------KASTSFSLVMNLMDHYPVQKFVQSA-AALYNWLKPDVPFLFSR--PAV 266 (943)
T ss_pred cccccchhhHHHHHhccHHHHHH---------HHhhhhhheecccccChhhhhhhhH-HHHHHHhcCccHHHhhc--ccc
Confidence 49999999999999999999885 5788899999999999999999865 55889999999999999 999
Q ss_pred HCCCeEEeccccccccCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCceeEecCCCCCchHHHHHHHhcCCceEEEEecch
Q psy7082 145 NTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDY 224 (528)
Q Consensus 145 ~~GrlE~vGGgwv~~De~l~s~EslIrql~~G~~~l~~~FG~~~~p~v~w~pD~FGhs~~lPqIl~~~Gi~~~v~~Ri~~ 224 (528)
+.|+|+.+||+||++|.++++||+++||+++|++|+.++|| ..+++.|.||+||.|++||||+..+|+++|+++++.|
T Consensus 267 ~~~~~~~~~g~~ve~d~n~~sGEslsrq~~~gq~~~~~~f~--~ssri~w~pd~fg~s~~Lpqil~p~gi~~f~t~klaw 344 (943)
T COG0383 267 EFEQWEIVGGMWVEEDLNTPSGESLSRQFLYGQRFFTEKFG--ASSRIYWKPDSFGFSGQLPQILEPLGIDVFVTTKLAW 344 (943)
T ss_pred cccceEEeecccccccCCccccchhhhhhhccceeeecccC--ccceeEeehhccccchhHHHHHHhhcchhhhccccch
Confidence 99999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCcceEEEEecCCCCCCceeEEeeccCcCCCCCCCcccccccccccCCCCCcCCCHHHHHHHHHHHHHHHHh
Q psy7082 225 QDLSKRQKEKGMQMLWEASADLGKSSHIFTEMINNVYNPPSGFCFDILCHIEFIDDETSSGYNAPYLAKEYLKWVQEQAA 304 (528)
Q Consensus 225 ~~~~~~~~~~~~eF~W~g~d~~~~gs~Ilth~l~~~Y~~~~~~~~d~~~~~~~~d~~~~~~~n~~~~~~~~~~~~~~~a~ 304 (528)
++.+.+|++ .|.|+++| |+++++|..+.+++. |. +.. .. ..+.. +
T Consensus 345 n~tn~~Ph~---~~~w~~~d----g~e~~~hds~~~~~~---------------d~-------v~~---~~--~~r~~-~ 389 (943)
T COG0383 345 NDTNRFPHD---LLRWRWKD----GTENLAHDSICGCSS---------------DP-------VHR---EM--EYRFE-K 389 (943)
T ss_pred hhccCCChh---Hheeeccc----ccccceeecCCCCcc---------------cH-------HHH---HH--Hhhhh-h
Confidence 999999876 89999999 899999987655521 10 110 00 01111 1
Q ss_pred hcCCCceeEeec-CCCCccchHHHHHHHHHHHHHHHhcccCCCcceEEEcChHHHHH----HHHhcCCCCCccccccccC
Q psy7082 305 QFRSNNIPALFG-GDFTYQEAEYYYRSLDKMIKYVNNMQINGSKVNLLYSTPSCYIK----AVHNSGITLPTKQDDFFPY 379 (528)
Q Consensus 305 ~~~t~~iL~~~G-~Df~~~~a~~~~~~l~~li~~~N~~~~~~~~~~v~~ST~~~Yf~----al~~~~~~lpv~~GDf~py 379 (528)
.....++.+| ||+......++..+.. ...+..+|. .+.......|++.|++|.
T Consensus 390 --~~~~~~~~~g~gd~ggg~~~dm~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ely~- 447 (943)
T COG0383 390 --INQVGLYLYGYGDGGGGPSIDMLENPE-------------------LPIAEGVFNTGVEKKTSTLELVPTWDGELYL- 447 (943)
T ss_pred --hccceeEEeeccCCCCCCCHHHHhccc-------------------cccccceeeecceeeeeecccccccchhhhh-
Confidence 2344555666 4555443333222211 111122221 112234568999999998
Q ss_pred CCCCCCcccceeecchHHHHHHHHHHHhHHhhhhhhhcCCCCCCCCcccccCCCCCCcchhhHHHhhhhhcccchhhhhH
Q psy7082 380 GSGKHAYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIYSEDLSCEPSETWDKFAINVYNALGRTVNRYVC 459 (528)
Q Consensus 380 ~~~~~~ywtG~yTSR~~lK~~nR~~e~~L~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 459 (528)
++|+|+|||+...|.++|.+|..|..+|..
T Consensus 448 -----E~hrg~~t~~~~~k~~~r~~e~~l~d~e~~--------------------------------------------- 477 (943)
T COG0383 448 -----ELHRGTYTTQAKTKKLNRESEFLLEDAEGI--------------------------------------------- 477 (943)
T ss_pred -----hccCceeehhhhhhhhccccccceeccccc---------------------------------------------
Confidence 899999999999999999999999987631
Q ss_pred HHHHHHhhhccCCCCCchhHHHHHHHHHHhhhccCCCCCCCCccchh-HHHHHHHHHHHHHHHHHHhhh
Q psy7082 460 KQLYVLSNLKSHSSHHHEDDLNVLREAMGVLQHHDGITGTAKQHPSN-NYAELIHNGLAACEKVANDAF 527 (528)
Q Consensus 460 e~L~~~a~~~~~~~~~~~~~l~~~w~~l~~~qhHDaItGTs~~~V~~-d~~~rl~~~~~~~~~~~~~al 527 (528)
..+.++..-.+..+|+ ..++++|+.++.+|+||.++||++..|+. +....+..+...+..+++.++
T Consensus 478 ~~~~~~~~~~~~~~~~--~~~~~~w~~~l~~qfhdvlpgs~i~~vy~~~a~~~~~~~~~~~~~i~~~~~ 544 (943)
T COG0383 478 SVEAAIIEGDRVTYPY--ELLNELWKGLLLAQFHDVLPGSSIKEVYSYDALPLLEVVQKGASKIAELAL 544 (943)
T ss_pred chhhhhhccccccCch--hhHHHHHHHhhhhhceeeccccceeeechhhHHHHHHhhhccchhhhhhhh
Confidence 1111111111134554 88999999999999999999999999999 999999999998888887765
No 8
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.5e-27 Score=273.68 Aligned_cols=362 Identities=17% Similarity=0.105 Sum_probs=280.0
Q ss_pred ceEEEEeecccCCccccchhHHheecCCCCCchhhHHHHHHHHHHHHhcCCCC-cEEEe-cchHHHHHHhhhChHHHHHH
Q psy7082 63 HINVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSNPDR-RFIQV-ETGFFSMWWKEQNNATKEMV 140 (528)
Q Consensus 63 ~~~VhlV~HSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vl~~L~~~p~~-kF~~~-E~~~l~~W~~~~~p~~~~~v 140 (528)
++.+|++.|+|||++|+.+.+.++. .+.+.++.+++.++++|.+ .|..+ ++++|++ +....|+.++++
T Consensus 3 ~~~~~ii~~~~wdrew~~~~e~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~d~qt~~l~d-~l~v~~~~~~~~ 72 (943)
T COG0383 3 KKKVHIISHSHWDREWYFTSESHRI---------LLDELFEEIIELLQKDPEFAGFHLDGQTIWLDD-YLAVPPELKDRV 72 (943)
T ss_pred ccccccchhhhhhhhceeeccceEe---------echhhhhhhhhccccCcccceecCccceeeeee-eEEecccchhhH
Confidence 4566999999999999999998775 3567799999999999944 48888 8888888 888999999999
Q ss_pred HHHHHCCCeEEeccccccccCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCceeEecCCCCCchHHHHHHHhcCCceEEEE
Q psy7082 141 RKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFS 220 (528)
Q Consensus 141 k~LV~~GrlE~vGGgwv~~De~l~s~EslIrql~~G~~~l~~~FG~~~~p~v~w~pD~FGhs~~lPqIl~~~Gi~~~v~~ 220 (528)
+.+++.|++ .+|++|.+.|.+++++|+.+||+++|..++ .++| ..++.||.||+||+..|.|+++..+||+.+.|+
T Consensus 73 ~~~~~~~~l-~ig~~~~~~~~~~~~~e~~~rn~l~~~~~~-~~~~--~~~~~g~~~d~~g~~~qa~~~~~~~~i~~~~f~ 148 (943)
T COG0383 73 KLLIASGKL-GIGPWYTQTDTFILSGESNVRNLLIGEFDA-ERFG--KAMKLGYFPDTFGNLGQAPQLYENAGISAVAFG 148 (943)
T ss_pred HHHHhhcCc-cccCCCCeeEEEEeccccceeeeecchHHH-HHhh--hhhccccccccchhhhhhhHHHHhcCCchhhcc
Confidence 999999999 899999999999999999999999999998 6788 689999999999999999999999999999999
Q ss_pred ecchhhhh-h--------hhcCCcceEEEEecCCCCCCceeEEeeccCcCCCCCCCcccccccccccCCCCCcCCCHHHH
Q psy7082 221 RMDYQDLS-K--------RQKEKGMQMLWEASADLGKSSHIFTEMINNVYNPPSGFCFDILCHIEFIDDETSSGYNAPYL 291 (528)
Q Consensus 221 Ri~~~~~~-~--------~~~~~~~eF~W~g~d~~~~gs~Ilth~l~~~Y~~~~~~~~d~~~~~~~~d~~~~~~~n~~~~ 291 (528)
|+..-... . -......+..|+++| |++++.+.+...|..+..+.-+.- ..++..
T Consensus 149 r~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~----~~~~l~il~~~~y~~g~~I~~~gh-------------ahid~a 211 (943)
T COG0383 149 RGAALIGFGQLVLFELLEAYGSDFSEITWSEPD----GSQVLGILLANGYSNGNEIPAVGH-------------AHIDTA 211 (943)
T ss_pred cccchhhcccchhhhhhhHhcCcCcccccccCC----chhhHHHHHHHHhhccccccccch-------------hhHHHH
Confidence 97633111 0 112235567899999 788988988999988765321100 122223
Q ss_pred HHHHHHHHHHHHhhcCCCceeEeecCCCCccchHHHHHHHHHHHHHHHhcccCCCcceEEEcC----hHHHHHHHHhc-C
Q psy7082 292 AKEYLKWVQEQAAQFRSNNIPALFGGDFTYQEAEYYYRSLDKMIKYVNNMQINGSKVNLLYST----PSCYIKAVHNS-G 366 (528)
Q Consensus 292 ~~~~~~~~~~~a~~~~t~~iL~~~G~Df~~~~a~~~~~~l~~li~~~N~~~~~~~~~~v~~ST----~~~Yf~al~~~-~ 366 (528)
+..-++..++.+ .+..++++.|.|..+ .+.++..-+++.|... ......|+. ...|+...... .
T Consensus 212 Wlw~l~et~r~a---~ts~~~~~~l~D~~p-----~~~~~~s~~~~y~~l~---~d~p~l~~~~~v~~~~~~~~~g~~ve 280 (943)
T COG0383 212 WLWPLDETERKA---STSFSLVMNLMDHYP-----VQKFVQSAAALYNWLK---PDVPFLFSRPAVEFEQWEIVGGMWVE 280 (943)
T ss_pred HhccHHHHHHHH---hhhhhheecccccCh-----hhhhhhhHHHHHHHhc---CccHHHhhcccccccceEEeeccccc
Confidence 332333344443 677888999999986 5677778888888775 344444555 44444433322 3
Q ss_pred CCCCcccccccc-CCCCCCCcc--cceeecchHHHHHHHHHHHhHHhhhhhhhcCCCCCCCCcccccCCCCCCcchhhHH
Q psy7082 367 ITLPTKQDDFFP-YGSGKHAYW--TGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIYSEDLSCEPSETWDKFA 443 (528)
Q Consensus 367 ~~lpv~~GDf~p-y~~~~~~yw--tG~yTSR~~lK~~nR~~e~~L~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (528)
..+++.+||+.. ...+...|. ...-+||..+|..+-..+..|-+
T Consensus 281 ~d~n~~sGEslsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpq--------------------------------- 327 (943)
T COG0383 281 EDLNTPSGESLSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQ--------------------------------- 327 (943)
T ss_pred ccCCccccchhhhhhhccceeeecccCccceeEeehhccccchhHHH---------------------------------
Confidence 457899999874 111111111 35668999999999888888873
Q ss_pred HhhhhhcccchhhhhHHHHHH-------HhhhccCCCCCchhHHHHHHHHHHhhhccCCCCCCCCccchhHHHHHHHHH
Q psy7082 444 INVYNALGRTVNRYVCKQLYV-------LSNLKSHSSHHHEDDLNVLREAMGVLQHHDGITGTAKQHPSNNYAELIHNG 515 (528)
Q Consensus 444 ~~~y~~~~~~~~~~~~e~L~~-------~a~~~~~~~~~~~~~l~~~w~~l~~~qhHDaItGTs~~~V~~d~~~rl~~~ 515 (528)
+++++.. ++...++.+|+ +.+.-.|+..+.++.||++|||+.|.|+.+++.|..+.
T Consensus 328 --------------il~p~gi~~f~t~klawn~tn~~Ph--~~~~w~~~dg~e~~~hds~~~~~~d~v~~~~~~r~~~~ 390 (943)
T COG0383 328 --------------ILEPLGIDVFVTTKLAWNDTNRFPH--DLLRWRWKDGTENLAHDSICGCSSDPVHREMEYRFEKI 390 (943)
T ss_pred --------------HHHhhcchhhhccccchhhccCCCh--hHheeecccccccceeecCCCCcccHHHHHHHhhhhhh
Confidence 5667665 66666667776 89999999999999999999999999999999999983
No 9
>PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0008270 zinc ion binding; PDB: 1O7D_C 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A 3BUQ_A ....
Probab=99.88 E-value=2.9e-23 Score=171.56 Aligned_cols=78 Identities=32% Similarity=0.570 Sum_probs=64.6
Q ss_pred CcccceeecchHHHHHHHHHHHhHHhhhhhhhcCCCCCCCCcccccCCCCCCcchhhHHHhhhhhcccchhhhhHHHHHH
Q psy7082 385 AYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIYSEDLSCEPSETWDKFAINVYNALGRTVNRYVCKQLYV 464 (528)
Q Consensus 385 ~ywtG~yTSR~~lK~~nR~~e~~L~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~L~~ 464 (528)
+||+|||||||.+|++||.+|++|++ +|+|.+
T Consensus 1 e~~~G~~tSr~~~K~~~r~~e~~L~~------------------------------------------------~E~l~~ 32 (80)
T PF09261_consen 1 EYWTGYYTSRPDIKQLNRRAENLLRA------------------------------------------------AEPLAA 32 (80)
T ss_dssp EES-GGGCSTHHHHHHHHHHHHHHHC------------------------------------------------HHHHHH
T ss_pred CCcceeeeCHHHHHHHHHHHHHHHHH------------------------------------------------HHHHHH
Confidence 58999999999999999999999984 456666
Q ss_pred Hhhhc--cCCCCCchhHHHHHHHHHHhhhccCCCCCCCCccchhHHHHHH
Q psy7082 465 LSNLK--SHSSHHHEDDLNVLREAMGVLQHHDGITGTAKQHPSNNYAELI 512 (528)
Q Consensus 465 ~a~~~--~~~~~~~~~~l~~~w~~l~~~qhHDaItGTs~~~V~~d~~~rl 512 (528)
++... +..+| ...|+++|+.|+++||||+|||||+++|++|+++||
T Consensus 33 ~~~~~~~~~~~~--~~~l~~~w~~l~~~q~HD~i~GT~~~~V~~d~~~rl 80 (80)
T PF09261_consen 33 LAALLGNGGDYP--QEELEKAWKALLLNQFHDAITGTSIDSVYDDYLRRL 80 (80)
T ss_dssp HCHHH--HSG-H--HHHHHHHHHHHHCTTBTTTTTS-S-HHHHHHHHHHH
T ss_pred HHhHhccCcccc--HHHHHHHHHHHHHhccCCCCCCcChHHHHHHHHHhC
Confidence 66555 23344 699999999999999999999999999999999986
No 10
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=99.85 E-value=8.5e-22 Score=162.43 Aligned_cols=77 Identities=34% Similarity=0.472 Sum_probs=65.0
Q ss_pred cccceeecchHHHHHHHHHHHhHHhhhhhhhcCCCCCCCCcccccCCCCCCcchhhHHHhhhhhcccchhhhhHHHHHHH
Q psy7082 386 YWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIYSEDLSCEPSETWDKFAINVYNALGRTVNRYVCKQLYVL 465 (528)
Q Consensus 386 ywtG~yTSR~~lK~~nR~~e~~L~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~L~~~ 465 (528)
||+||||||+.+|++||++|++|+.+|. +.++
T Consensus 1 ~h~G~~Tsr~~~K~~~r~~E~~L~~~e~------------------------------------------------~~~~ 32 (79)
T smart00872 1 YHRGTYTSRPYLKRLNRRLESLLRAAEE------------------------------------------------LAAL 32 (79)
T ss_pred CCCceecCHHHHHHHHHHHHHHHHHHHH------------------------------------------------HHHH
Confidence 6999999999999999999999996553 3334
Q ss_pred hhhc--cCCCCCchhHHHHHHHHHHhhhccCCCCCCCCccchhHHHHHH
Q psy7082 466 SNLK--SHSSHHHEDDLNVLREAMGVLQHHDGITGTAKQHPSNNYAELI 512 (528)
Q Consensus 466 a~~~--~~~~~~~~~~l~~~w~~l~~~qhHDaItGTs~~~V~~d~~~rl 512 (528)
+... +..+| .+.|+.+||.|+++||||+|||||+++|++|+..|+
T Consensus 33 ~~~~~~~~~~~--~~~l~~~wk~ll~~q~HD~i~Gt~~~~V~~d~~~r~ 79 (79)
T smart00872 33 AALLLLGYKYP--SEQLEELWKALLLNQFHDAITGTSIDEVYDDYETRL 79 (79)
T ss_pred HHHHhcCCCCc--HHHHHHHHHHHHHhcCcccCCccCcHHHHHHHHHhC
Confidence 3332 33444 689999999999999999999999999999999885
No 11
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=98.83 E-value=1.8e-08 Score=106.13 Aligned_cols=122 Identities=14% Similarity=0.154 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEecchHHHHHHhhhChHH-----------------------------------------
Q psy7082 98 VRKIIGSTVAALNSNPDRRFIQVETGFFSMWWKEQNNAT----------------------------------------- 136 (528)
Q Consensus 98 v~~il~~vl~~L~~~p~~kF~~~E~~~l~~W~~~~~p~~----------------------------------------- 136 (528)
..+.+-.+++.|++.|+.|++++=+..|-+++++..|+.
T Consensus 28 ~~~~Y~pll~~l~~~~~~k~t~~lSp~LleqL~d~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~l~~~~~ 107 (360)
T PF03065_consen 28 ATECYLPLLRLLERLPDFKLTFSLSPSLLEQLEDYAPQEYDQYLERSLARAELLREEKEFLLRANFTREDFERLLDFFRE 107 (360)
T ss_dssp HHHTHHHHHHHHHHHHH--EEEEE-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhCcCccEEEEECHHHHHHHHhhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 456666778888888888877774556777788888888
Q ss_pred -----HHHHHHHHHCCCeEEeccccccccCCCCCH-HHHHHHHHHHHHHHHHHhCCCCCCceeEecCCCCCchHHHHHHH
Q psy7082 137 -----KEMVRKLVNTGRLEFTGGAWAMNDEATAHY-ASILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFA 210 (528)
Q Consensus 137 -----~~~vk~LV~~GrlE~vGGgwv~~De~l~s~-EslIrql~~G~~~l~~~FG~~~~p~v~w~pD~FGhs~~lPqIl~ 210 (528)
.+.+|+|+++|++|++|++|..+=..+... |++..|+..|.+.+++.|| .+|+..|+|.. +.+..+..+|+
T Consensus 108 ~~~~ii~~~~~l~~~G~iEll~~~~~h~ilpl~~~~~d~~~Qi~~~~~~~~~~FG--~~P~G~W~pE~-a~~~~l~~~l~ 184 (360)
T PF03065_consen 108 IIGDIIEAFRELAERGQIELLTSPYYHPILPLLPDPEDFRAQIEMGREYFKKHFG--RRPRGFWLPEC-AYSPGLEEILA 184 (360)
T ss_dssp TTT-HHHHHHHHHHTTSEEEEEE-TT-B-GGGSSHHHHHHHHHHHHHHHHHHHHS--S--SBEE-GGG--B-TTHHHHHH
T ss_pred hhhhhHHHHHHHHHCCCEEEEeCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC--CCCCceECccc-ccCHHHHHHHH
Confidence 999999999999999999999999999898 9999999999999999999 89999999998 89999999999
Q ss_pred hcCCceEEEEec
Q psy7082 211 QMGYEGFMFSRM 222 (528)
Q Consensus 211 ~~Gi~~~v~~Ri 222 (528)
++||+++++.--
T Consensus 185 ~~Gi~~~i~d~~ 196 (360)
T PF03065_consen 185 EAGIRYTILDGH 196 (360)
T ss_dssp HTT--EEEEECH
T ss_pred HcCCEEEEECcH
Confidence 999999999753
No 12
>COG1543 Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.00029 Score=74.78 Aligned_cols=93 Identities=18% Similarity=0.278 Sum_probs=83.7
Q ss_pred HHHHHhhhChHHHHHHHHHHHCCCeEEeccccccccCCCCCH-HHHHHHHHHHHHHHHHHhCCCCCCceeEecCCCCCch
Q psy7082 125 FSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHY-ASILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSK 203 (528)
Q Consensus 125 l~~W~~~~~p~~~~~vk~LV~~GrlE~vGGgwv~~De~l~s~-EslIrql~~G~~~l~~~FG~~~~p~v~w~pD~FGhs~ 203 (528)
....|+..+++..++||++.+.|.+|+++...+-.--.+-.. |++=-|++.|.+-.++.|| ..|+--|+|.+ ++..
T Consensus 114 ~~~~~e~~d~~ll~~f~~~~~~g~ieilts~athg~lPll~~peAi~AQi~~g~~~ye~~fg--~~P~GiWlPEc-ay~p 190 (504)
T COG1543 114 ARGYWEQYDGNLLEAFKELQRSGGIEILTSAATHGYLPLLGGPEAIEAQILTGIELYEEHFG--LAPKGIWLPEC-AYAP 190 (504)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCCceeeeehhhheehhhcCCchhhHHHHHHHHHHHHHHhC--CCCCceechhh-cccc
Confidence 456688889999999999999999999999888766555555 9999999999999999999 67999999987 9999
Q ss_pred HHHHHHHhcCCceEEEE
Q psy7082 204 EMASMFAQMGYEGFMFS 220 (528)
Q Consensus 204 ~lPqIl~~~Gi~~~v~~ 220 (528)
.++.+|+..||+++++.
T Consensus 191 gie~~l~~~Gi~yf~vd 207 (504)
T COG1543 191 GIERILKDAGIEYFFVD 207 (504)
T ss_pred chHHHHHhcCceEEEec
Confidence 99999999999999997
No 13
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=96.36 E-value=1.3 Score=45.63 Aligned_cols=111 Identities=17% Similarity=0.096 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhcCCC-CcEEEecchHHHHHHhhhChHHHHHHHHHHHCCCeEEeccccccccCCCCCHHHHHHHHHHH
Q psy7082 98 VRKIIGSTVAALNSNPD-RRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLG 176 (528)
Q Consensus 98 v~~il~~vl~~L~~~p~-~kF~~~E~~~l~~W~~~~~p~~~~~vk~LV~~GrlE~vGGgwv~~De~l~s~EslIrql~~G 176 (528)
.+.=+-.+|++|+++-- .+|... + |..+.+|+ .+|+.+++| .|+.+=||...+...-+.+...++|..+
T Consensus 75 ~rvG~~RiLdlL~~~gv~aTffv~--g----~~~e~~P~---~v~~i~~~G-HEIg~Hg~~H~~~~~ls~~~e~~~i~~s 144 (297)
T TIGR03212 75 SRAGFWRLLRLFTERGIPVTVFGV--A----MALARNPE---AVAAMKEAG-WEIASHGLRWIDYQDMDEAQEREHIAEA 144 (297)
T ss_pred chhCHHHHHHHHHHcCCCEEEEeE--H----HHHHHCHH---HHHHHHHcC-CEEeeccccCcccccCCHHHHHHHHHHH
Confidence 34556678999998742 345443 2 24455775 466677899 8899999988777777889999999999
Q ss_pred HHHHHHHhCCCCCCceeEecCCCCCchHHHHHHHh-cCCceEEEEecc
Q psy7082 177 LRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQ-MGYEGFMFSRMD 223 (528)
Q Consensus 177 ~~~l~~~FG~~~~p~v~w~pD~FGhs~~lPqIl~~-~Gi~~~v~~Ri~ 223 (528)
.+-+++..| .+..||.. -.+|..++.||++ .||.+..-+..+
T Consensus 145 ~~~i~~~tG---~~P~G~~~--~~~s~~T~~LL~e~~Gf~Y~sd~~~d 187 (297)
T TIGR03212 145 IRLHTEVTG---ERPLGWYT--GRTSPNTRRLVAEEGGFLYDADSYAD 187 (297)
T ss_pred HHHHHHHhC---CCCceEEC--CCCChhHHHHHHHhcCceEeCchhhc
Confidence 999977778 45677863 3689999999998 999987665544
No 14
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=96.12 E-value=0.054 Score=47.24 Aligned_cols=104 Identities=18% Similarity=0.332 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhcCC-CCcEEEecchHHHHHHhhhChHHHHHHHHHHHCCCeEEeccccccccCCCCCHHHHHHHHHHHH
Q psy7082 99 RKIIGSTVAALNSNP-DRRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLGL 177 (528)
Q Consensus 99 ~~il~~vl~~L~~~p-~~kF~~~E~~~l~~W~~~~~p~~~~~vk~LV~~GrlE~vGGgwv~~De~l~s~EslIrql~~G~ 177 (528)
......+++.|+++. ...|-.. ..+..+ ..+.+++++++| +|+.+=+|.-++....+.|.+.++|..+.
T Consensus 17 ~~~~~~~~~~l~~~~i~at~fv~-~~~~~~--------~~~~l~~l~~~G-~ei~~H~~~H~~~~~~~~~~~~~ei~~~~ 86 (123)
T PF01522_consen 17 RDNYDRLLPLLKKYGIPATFFVI-GSWVER--------YPDQLRELAAAG-HEIGNHGWSHPNLSTLSPEELRREIERSR 86 (123)
T ss_dssp HTHHHHHHHHHHHTT--EEEEE--HHHHHH--------HHHHHHHHHHTT--EEEEE-SSSSCGGGS-HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcccceeeeec-cccccc--------ccccchhHHHHH-HHHHhcCCcccccccCCHHHHHHHHHHHH
Confidence 356678899999874 2334333 122333 267899999999 99999999999988889999999999999
Q ss_pred HHHHHHhCCCCCCceeEecCCCCC-chHHHHHHHhcCCce
Q psy7082 178 RLLNETFGRCGVPRVGWQIDPFGH-SKEMASMFAQMGYEG 216 (528)
Q Consensus 178 ~~l~~~FG~~~~p~v~w~pD~FGh-s~~lPqIl~~~Gi~~ 216 (528)
+.+++.+| . +..+|. =|||. +...-++++++|+++
T Consensus 87 ~~l~~~~g--~-~~~~f~-~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 87 EILEEITG--R-PPKGFR-YPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp HHHHHHHS--S-EESEEE--GGGEECHHHHHHHHHTT-EE
T ss_pred HHHHHHhC--C-CCcEEE-CCCCCCCHHHHHHHHHcCCCc
Confidence 99999999 4 333344 56775 777789999999987
No 15
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=93.98 E-value=0.62 Score=45.84 Aligned_cols=102 Identities=10% Similarity=0.161 Sum_probs=76.9
Q ss_pred HHHHHHHhcCCC-CcEEEecchHHHHHHhhhChHHHHHHHHHHHCCCeEEeccccccccCCCCCHHHHHHHHHHHHHHHH
Q psy7082 103 GSTVAALNSNPD-RRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRLLN 181 (528)
Q Consensus 103 ~~vl~~L~~~p~-~kF~~~E~~~l~~W~~~~~p~~~~~vk~LV~~GrlE~vGGgwv~~De~l~s~EslIrql~~G~~~l~ 181 (528)
..+++.|+++.- .+|...- .| .+.+| +.+++++++|. |+-+-+|.-++-...+.+.+.+++....+.++
T Consensus 53 ~~lL~~L~~~~vkATFFv~G-----~~-~~~~p---~~ir~i~~~Gh-eIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i~ 122 (224)
T TIGR02884 53 PKILDVLKEKKVPAAFFVTG-----HY-IKTQP---DLIKRMVDEGH-IVGNHSVHHPSLTAVNDEKFKEELTGVEEEFK 122 (224)
T ss_pred HHHHHHHHHcCCCeEEEeec-----hh-hHHCH---HHHHHHHHcCC-EeeecCccCcCcccCCHHHHHHHHHHHHHHHH
Confidence 347888888742 3344331 22 23355 67889999995 68888999888888899999999999999998
Q ss_pred HHhCCCCCCceeEecCCCC-CchHHHHHHHhcCCceE
Q psy7082 182 ETFGRCGVPRVGWQIDPFG-HSKEMASMFAQMGYEGF 217 (528)
Q Consensus 182 ~~FG~~~~p~v~w~pD~FG-hs~~lPqIl~~~Gi~~~ 217 (528)
+..| .. ...|.-=|+| ++..+.++++++|+..+
T Consensus 123 ~~~G--~~-~~~~fR~P~G~~~~~~~~~l~~~Gy~~v 156 (224)
T TIGR02884 123 KVTG--QK-EMKYFRPPRGVFSERTLAYTKELGYYTV 156 (224)
T ss_pred HHhC--CC-CCCEEeCCCCCcCHHHHHHHHHcCCcEE
Confidence 8888 33 2446777888 57789999999999864
No 16
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=93.81 E-value=1.1 Score=45.57 Aligned_cols=111 Identities=21% Similarity=0.331 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHhcCC-CCcEEEecchHHHHHHhhhChHHHHHHHHHHHCCCeEEeccccccccCCCCCHHHHHHHHHH
Q psy7082 97 SVRKIIGSTVAALNSNP-DRRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSL 175 (528)
Q Consensus 97 ~v~~il~~vl~~L~~~p-~~kF~~~E~~~l~~W~~~~~p~~~~~vk~LV~~GrlE~vGGgwv~~De~l~s~EslIrql~~ 175 (528)
+|.+.+..++++|+++- ..+|-.. + |+.+.+| +.+++++++| .|+.+=+|...+....+.+.+..++..
T Consensus 25 rv~~nt~riL~lL~~~gikATFFv~--g----~~~e~~p---~lir~i~~~G-hEIgsHg~sH~~l~~ls~ee~~~eI~~ 94 (265)
T TIGR03006 25 RVERNTDRILDLLDRHGVKATFFTL--G----WVAERYP---ELVRRIVAAG-HELASHGYGHERVTTQTPEAFRADIRR 94 (265)
T ss_pred hHHHhHHHHHHHHHHcCCcEEEEEe--c----cchhhCH---HHHHHHHHcC-CEeeeccccCcCchhCCHHHHHHHHHH
Confidence 46778889999999984 3444443 1 2344466 4589999999 699999999887777788999999999
Q ss_pred HHHHHHHHhCCCCCCceeEecCCCCCch---HHHHHHHhcCCceEEEE
Q psy7082 176 GLRLLNETFGRCGVPRVGWQIDPFGHSK---EMASMFAQMGYEGFMFS 220 (528)
Q Consensus 176 G~~~l~~~FG~~~~p~v~w~pD~FGhs~---~lPqIl~~~Gi~~~v~~ 220 (528)
..+.+++..| . +-.||-+=.+..+. ...++|++.||.+..-.
T Consensus 95 s~~~Le~itG--~-~~~gfRaP~~s~~~~t~~a~~iL~e~Gy~YdsS~ 139 (265)
T TIGR03006 95 SKALLEDLSG--Q-PVRGYRAPSFSIGKKNLWALDVLAEAGYRYSSSI 139 (265)
T ss_pred HHHHHHHHhC--C-CceEEECCCCCCCCCcHHHHHHHHHCCCEEEEee
Confidence 9999987778 3 44567654443333 34689999999987666
No 17
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=93.57 E-value=1.5 Score=41.68 Aligned_cols=101 Identities=19% Similarity=0.324 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCC-CcEEEecchHHHHHHhhhChHHHHHHHHHHHCCCeEEeccccccccCCCCCHHHHHHHHHHHHHHHH
Q psy7082 103 GSTVAALNSNPD-RRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRLLN 181 (528)
Q Consensus 103 ~~vl~~L~~~p~-~kF~~~E~~~l~~W~~~~~p~~~~~vk~LV~~GrlE~vGGgwv~~De~l~s~EslIrql~~G~~~l~ 181 (528)
..+++.|+++.- .+|... + . +.+.+| +.+++++++|. |+-+-+|.-++..-.+.+.+.+++..+.+.++
T Consensus 22 ~~~l~~L~~~~ikaTfFv~--g---~-~~~~~~---~~~~~i~~~Gh-eig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~ 91 (191)
T TIGR02764 22 EPILDTLKEYDVKATFFLS--G---S-WAERHP---ELVKEIVKDGH-EIGSHGYRHKNYTTLEDEKIKKDILRAQEIIE 91 (191)
T ss_pred HHHHHHHHHcCCCEEEEec--c---H-HHHHCH---HHHHHHHhCCC-EEEECCcCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 456788888743 334332 1 2 223355 56888999996 79999999988888889999999999999998
Q ss_pred HHhCCCCCCceeEecCCCC-CchHHHHHHHhcCCceE
Q psy7082 182 ETFGRCGVPRVGWQIDPFG-HSKEMASMFAQMGYEGF 217 (528)
Q Consensus 182 ~~FG~~~~p~v~w~pD~FG-hs~~lPqIl~~~Gi~~~ 217 (528)
+..| ..|+ |.-=|+| ++..+.+++++.|++.+
T Consensus 92 ~~~g--~~~~--~fr~P~G~~~~~~~~~l~~~G~~~v 124 (191)
T TIGR02764 92 KLTG--KKPT--LFRPPSGAFNKAVLKAAESLGYTVV 124 (191)
T ss_pred HHhC--CCCC--EEECCCcCCCHHHHHHHHHcCCeEE
Confidence 8888 4554 3444666 56777889999999843
No 18
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=91.26 E-value=3.6 Score=41.79 Aligned_cols=102 Identities=20% Similarity=0.374 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCC-CCcEEEecchHHHHHHhhhChHHHHHHHHHHHCCCeEEeccccccccCCCCCHHHHHHHHHHHHHH
Q psy7082 101 IIGSTVAALNSNP-DRRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRL 179 (528)
Q Consensus 101 il~~vl~~L~~~p-~~kF~~~E~~~l~~W~~~~~p~~~~~vk~LV~~GrlE~vGGgwv~~De~l~s~EslIrql~~G~~~ 179 (528)
....+++.|+++- ..+|...- .| .+.+|+ .+|+++++|. |+-+=+|.-++....+.+.+.++|..+.+.
T Consensus 99 ~t~~iL~iLkk~~vkATFFv~G-----~~-i~~~p~---l~k~i~~~Gh-eIGnHT~sH~~l~~ls~~~~~~Ei~~~~~~ 168 (268)
T TIGR02873 99 YLPEILQILKKHDVKATFFLEG-----KW-VKENSQ---LAKMIVEQGH-EIGNHAYNHPDMATLSKEEIYDQINQTNEI 168 (268)
T ss_pred hHHHHHHHHHHCCCCEEEEeeh-----Hh-hhHCHH---HHHHHHHCCC-EEEecCCcCCCcccCCHHHHHHHHHHHHHH
Confidence 3446788998874 33444431 22 334564 5788899995 699999999888888999999999999999
Q ss_pred HHHHhCCCCCCceeEecCCCCC-chHHHHHHHhcCCce
Q psy7082 180 LNETFGRCGVPRVGWQIDPFGH-SKEMASMFAQMGYEG 216 (528)
Q Consensus 180 l~~~FG~~~~p~v~w~pD~FGh-s~~lPqIl~~~Gi~~ 216 (528)
+++..| ..|+ |.-=|+|. +..+.++++.+|+..
T Consensus 169 i~~~~G--~~p~--~fRpP~G~~n~~~~~~l~~~G~~~ 202 (268)
T TIGR02873 169 IEATIG--VTPK--WFAPPSGSFNDNVVQIAADLQMGT 202 (268)
T ss_pred HHHHhC--CCCC--EEECCCCCCCHHHHHHHHHCCCeE
Confidence 988889 5566 55568886 578888999999975
No 19
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=90.72 E-value=4.6 Score=45.85 Aligned_cols=97 Identities=14% Similarity=0.216 Sum_probs=78.3
Q ss_pred EEEecchHHHHHHhhhChHHHHHHHHHHHCCCeEEeccccccccCCCCCH----HHHHHHHHHHHHHHHHHhCCCCCCce
Q psy7082 117 FIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHY----ASILDGFSLGLRLLNETFGRCGVPRV 192 (528)
Q Consensus 117 F~~~E~~~l~~W~~~~~p~~~~~vk~LV~~GrlE~vGGgwv~~De~l~s~----EslIrql~~G~~~l~~~FG~~~~p~v 192 (528)
|+++...-+-.+-....++..+.+|++++.|+.|++.--|-.+=..+... +++++|+..+....++-|| ..|+.
T Consensus 162 ys~~g~~~il~~~~~~~~~vl~~~r~l~e~g~~e~~~~pyyHsl~pl~~d~gw~~d~~~qv~~~~~~~~elfG--~~p~~ 239 (615)
T COG1449 162 YSLSGGETILEQQLDEAPRVLEAFRELAESGKVELTASPYYHSLIPLLADDGWYEDFKEQVMMSRELYKELFG--VWPSG 239 (615)
T ss_pred eeccccHHHHHHHHHHHhhhHHHHHHHHhcCceEEEecccccccchhcccCCchHHHHHHHHHHHHHHHHHhC--CCCcc
Confidence 66653113334467778999999999999999999988887664444333 5999999999999999999 78999
Q ss_pred eEecCCCCCchHHHHHHHhcCCce
Q psy7082 193 GWQIDPFGHSKEMASMFAQMGYEG 216 (528)
Q Consensus 193 ~w~pD~FGhs~~lPqIl~~~Gi~~ 216 (528)
.|.+- +=.+.++.++++++|+..
T Consensus 240 ~~~tE-l~y~~~i~~~~~e~G~~~ 262 (615)
T COG1449 240 FWNTE-LAYNDQILEYFEESGFSW 262 (615)
T ss_pred ccChh-hhccHHHHHHHHHcCCcc
Confidence 88875 478889999999999995
No 20
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=86.27 E-value=39 Score=38.92 Aligned_cols=81 Identities=19% Similarity=0.271 Sum_probs=60.5
Q ss_pred HHHHHHHHCCCeEEeccccccccCCC--------------------CCH-------HHHHHHHHHHHHHHHHHhCCCCCC
Q psy7082 138 EMVRKLVNTGRLEFTGGAWAMNDEAT--------------------AHY-------ASILDGFSLGLRLLNETFGRCGVP 190 (528)
Q Consensus 138 ~~vk~LV~~GrlE~vGGgwv~~De~l--------------------~s~-------EslIrql~~G~~~l~~~FG~~~~p 190 (528)
++||+++++|-+||-+=+|..|.-.. ..+ +.+.+.+....+.+++..| ..|
T Consensus 168 eqIreM~~sGlvEIGSHT~~sH~~l~anp~g~~~pa~~~r~~~~~~~~yEs~~e~~~ri~~DL~~s~~~Ie~~tG--~~p 245 (671)
T PRK14582 168 QQVREVARSRLVEIASHTWNSHYGIQANPQGSLLPAAVNRAYFTDHARYETAAEYRERIRLDAVKMTEYIRTKAG--KNP 245 (671)
T ss_pred HHHHHHHhCCCeEEEcCCchhccccccccccccccchhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHhC--CCC
Confidence 68999999999998888886453110 012 2366789999999999999 556
Q ss_pred ceeEecCCCC-CchHHHHHHHhcCCceEEEEec
Q psy7082 191 RVGWQIDPFG-HSKEMASMFAQMGYEGFMFSRM 222 (528)
Q Consensus 191 ~v~w~pD~FG-hs~~lPqIl~~~Gi~~~v~~Ri 222 (528)
++ ..=||| ++.....+++++|++..++.+-
T Consensus 246 ~~--FayPyG~~n~~~~~iakeaGY~~afT~~~ 276 (671)
T PRK14582 246 RV--WVWPYGEANGIALEELKKLGYDMAFTLES 276 (671)
T ss_pred cE--EecCCCCCCHHHHHHHHHCCCeEEEEeCC
Confidence 64 455788 4667788999999998888653
No 21
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=85.40 E-value=4.5 Score=46.28 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=62.1
Q ss_pred HHHHHHHHHCCCeEEeccccccccCC--------------------CCCHH-------HHHHHHHHHHHHHHHHhCCCCC
Q psy7082 137 KEMVRKLVNTGRLEFTGGAWAMNDEA--------------------TAHYA-------SILDGFSLGLRLLNETFGRCGV 189 (528)
Q Consensus 137 ~~~vk~LV~~GrlE~vGGgwv~~De~--------------------l~s~E-------slIrql~~G~~~l~~~FG~~~~ 189 (528)
.++||+++++|-+||-+=+|..+... ...+| .+-+.+....+.+++..| ..
T Consensus 167 W~qIrEM~~sGLvEIGSHT~sHh~~~~~np~g~~~pa~~~~~y~~~~~~yEs~~~~~~rl~~Di~~s~~~Ie~~lG--~~ 244 (672)
T PRK14581 167 WKQITEMSKSGLVEIGAHTYASHYGVIANPQGNTEPAAANLQYDPKTKQYETVEAFKQRMEKDVALITQRIVQATG--KQ 244 (672)
T ss_pred HHHHHHHHHCCCcEEEcCCcccccccccCccccccchhhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhC--CC
Confidence 36899999999999988888766321 11223 255668888999988899 55
Q ss_pred CceeEecCCCC-CchHHHHHHHhcCCceEEEEecc
Q psy7082 190 PRVGWQIDPFG-HSKEMASMFAQMGYEGFMFSRMD 223 (528)
Q Consensus 190 p~v~w~pD~FG-hs~~lPqIl~~~Gi~~~v~~Ri~ 223 (528)
|++ ..=||| ++...-++++++|++..++.+-.
T Consensus 245 p~~--FayPyG~yn~~~~~iak~aGy~~afTt~~G 277 (672)
T PRK14581 245 PRV--WVWPYGAPNGTVLNILRQHGYQLAMTLDPG 277 (672)
T ss_pred CCE--EEcCCCCcCHHHHHHHHHCCCcEEEECCCC
Confidence 664 445788 47788899999999999887644
No 22
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=76.73 E-value=97 Score=32.00 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=62.3
Q ss_pred HHHHHHHHCCCeEEecccccccc----CCCCCHHHHHHHHHHHHHHHHHHhCCCCCCceeEecCCCCCchHHHHHHHhcC
Q psy7082 138 EMVRKLVNTGRLEFTGGAWAMND----EATAHYASILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMG 213 (528)
Q Consensus 138 ~~vk~LV~~GrlE~vGGgwv~~D----e~l~s~EslIrql~~G~~~l~~~FG~~~~p~v~w~pD~FGhs~~lPqIl~~~G 213 (528)
+.+|+.+++ -|+-+=||.-.. ...-+.+.+.++|..+.+-+++..| .+-.||-+=.+-.+..+..+++++|
T Consensus 92 ~lvr~i~~~--HEIG~Hg~~H~~wq~~~~~ls~~e~~~eI~ra~~~Le~itG---~~p~g~raPgw~~~~~tl~ll~e~G 166 (296)
T PRK15394 92 DIIREAAKA--HEVGLHAWDHHAWQAWSGVWSRQQLIEQIARGVDALEEIIG---QPVTCSAAAGWRADQRVVEAKEAFG 166 (296)
T ss_pred HHHHHHHhc--CEehhcccCccchhcccccCCHHHHHHHHHHHHHHHHHHhC---CCCCEEeCCCccCCHHHHHHHHHcC
Confidence 456666666 888888898652 3445778899999999999988888 4566787777778889999999999
Q ss_pred CceEEEEec
Q psy7082 214 YEGFMFSRM 222 (528)
Q Consensus 214 i~~~v~~Ri 222 (528)
|.|-.-.|.
T Consensus 167 f~Y~Ss~~~ 175 (296)
T PRK15394 167 FRYNSDCRG 175 (296)
T ss_pred CeeecCCCC
Confidence 999744443
No 23
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=67.62 E-value=5.6 Score=31.00 Aligned_cols=22 Identities=36% Similarity=0.815 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHCCCeEEecccc
Q psy7082 135 ATKEMVRKLVNTGRLEFTGGAW 156 (528)
Q Consensus 135 ~~~~~vk~LV~~GrlE~vGGgw 156 (528)
+.++-+.++|++|+||++||-|
T Consensus 37 eL~~fL~~lv~e~~L~~~~G~Y 58 (60)
T PF08672_consen 37 ELQEFLDRLVEEGKLECSGGSY 58 (60)
T ss_dssp HHHHHHHHHHHTTSEE--TTEE
T ss_pred HHHHHHHHHHHCCcEEecCCEE
Confidence 3344478899999999999877
No 24
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=60.55 E-value=41 Score=35.85 Aligned_cols=88 Identities=18% Similarity=0.164 Sum_probs=70.4
Q ss_pred HHHHHHhhhChHHHHHHHHHHHCCCeEEeccccccccCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCceeEecCCCCCch
Q psy7082 124 FFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSK 203 (528)
Q Consensus 124 ~l~~W~~~~~p~~~~~vk~LV~~GrlE~vGGgwv~~De~l~s~EslIrql~~G~~~l~~~FG~~~~p~v~w~pD~FGhs~ 203 (528)
||+. ..+++|.+.+.-.+|=++|+| .+|..+.+.+.+.+|+..=+ +.++. ...++....=.+||+.
T Consensus 2 ~~~~-~~~~n~~~~~~a~~~~~~g~~--------~~~~yvIDl~~I~~N~~~l~----~~~~~-~~~~l~~vvKAna~~~ 67 (382)
T cd06811 2 FLEA-LLKRNPALIEAALTLHQSGAI--------PPDTYVIDLDQIEENARLLA----ETAEK-YGIELYFMTKQFGRNP 67 (382)
T ss_pred chHH-HhhhCHHHHHHHHHHHHcCCC--------CCCEEEecHHHHHHHHHHHH----HHHhh-CCCEEEEEEccCCCCH
Confidence 3444 788999999999999999998 57888888888888876544 44441 1246888888998889
Q ss_pred HHHHHHHhcCCceEEEEecchh
Q psy7082 204 EMASMFAQMGYEGFMFSRMDYQ 225 (528)
Q Consensus 204 ~lPqIl~~~Gi~~~v~~Ri~~~ 225 (528)
.+..++.+.|++++....+...
T Consensus 68 ~ia~~l~~~G~~g~~vas~~Ea 89 (382)
T cd06811 68 FLARALLEAGIPGAVAVDFKEA 89 (382)
T ss_pred HHHHHHHHcCCCeEeEecHHHH
Confidence 9999999999999999877654
No 25
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=59.03 E-value=16 Score=36.30 Aligned_cols=100 Identities=14% Similarity=0.225 Sum_probs=60.9
Q ss_pred cccccccC---CCCCCceEEEEeecccC------CccccchhHHheecCCCCCchhhHHHHHHHHHHHHhcCCCCcEEEe
Q psy7082 50 TCSYQACH---PVKPDHINVHIIPHSHD------DMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSNPDRRFIQV 120 (528)
Q Consensus 50 ~~~~~~~~---~~~~~~~~VhlV~HSH~------D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vl~~L~~~p~~kF~~~ 120 (528)
--||-.|. ..-|+..+|++|-..-. =-.|..|.- .+. +....+--+-.++.-+++=|...|+++
T Consensus 135 RaGwigCnI~l~~iPesGkI~lv~~~~~~~~~~V~~~~~~tlf--Lr~-----~~~~~rGWlldi~~cid~i~~~~FtL~ 207 (254)
T PF06044_consen 135 RAGWIGCNIDLSKIPESGKIFLVKNGQIIPPEEVLEQWQKTLF--LRT-----QNIESRGWLLDIMKCIDKIPKNEFTLD 207 (254)
T ss_dssp ---EEEEEEEGGGS-GGG-EEEEETTEE--HHHHHHHHHHGGG--GGG-----S-HHHHHHHHHHHHHHHHS-SSEEEHH
T ss_pred cCCcceeeeecccCCCcceEEEEeCCeEcCHHHHHHHHHHHHH--HHh-----ccccccchHHHHHHHHHhcCccceeHH
Confidence 34565565 23466778888865432 223443321 110 001234455567777778888899999
Q ss_pred cchHHHHHHhhhChH-------HHHHHHHHHHCCCeEEecccc
Q psy7082 121 ETGFFSMWWKEQNNA-------TKEMVRKLVNTGRLEFTGGAW 156 (528)
Q Consensus 121 E~~~l~~W~~~~~p~-------~~~~vk~LV~~GrlE~vGGgw 156 (528)
|+.-|++-+...+|. .+.+|+.|=+.|-|||+|.|-
T Consensus 208 diY~Fe~~L~~~~P~N~~Ik~KIRQqLQ~LRD~g~IeFl~rG~ 250 (254)
T PF06044_consen 208 DIYAFEDELQIKYPNNNHIKAKIRQQLQILRDKGIIEFLGRGR 250 (254)
T ss_dssp HHHTTHHHHHHHSTT-S-HHHHHHHHHHHHHHTTSEEE-STTE
T ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHhhCCceEEecCCc
Confidence 988888888888884 467777788999999999884
No 26
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=50.72 E-value=18 Score=33.08 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEecchHHHHHHhhhChHHHHHHHHHHHCCCeEEecc
Q psy7082 98 VRKIIGSTVAALNSNPDRRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGG 154 (528)
Q Consensus 98 v~~il~~vl~~L~~~p~~kF~~~E~~~l~~W~~~~~p~~~~~vk~LV~~GrlE~vGG 154 (528)
....+..|-+.|.++|.+.-+..|++ +..--..+.|.++|++|||++.+.
T Consensus 28 ~e~~f~kV~~yLr~~p~~~ati~eV~-------e~tgVs~~~I~~~IreGRL~~~~~ 77 (137)
T TIGR03826 28 EEREFEKVYKFLRKHENRQATVSEIV-------EETGVSEKLILKFIREGRLQLKHF 77 (137)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHH-------HHHCcCHHHHHHHHHcCCeeccCC
Confidence 45777888899999999776655533 333445578999999999988763
No 27
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=43.13 E-value=2.1e+02 Score=27.51 Aligned_cols=101 Identities=17% Similarity=0.304 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCCC-CcEEEecchHHHHHHhhhChHHHHHHHHHHHCCCeEEeccccccccCCCCCHHHHHHHHHHHHHH
Q psy7082 101 IIGSTVAALNSNPD-RRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRL 179 (528)
Q Consensus 101 il~~vl~~L~~~p~-~kF~~~E~~~l~~W~~~~~p~~~~~vk~LV~~GrlE~vGGgwv~~De~l~s~EslIrql~~G~~~ 179 (528)
....+++.|+++-- .+|-.. + . +.+.+|+..+++.+ +|.- +-.=+|--.+..-.+.+.+..++...+..
T Consensus 79 ~~~~il~iL~k~~i~ATfFv~--g---~-~i~~~p~~~~~~~~---~Ghe-ig~H~~~h~~~~~~~~~~~~~~i~~~~~~ 148 (267)
T COG0726 79 NTPRILPLLKKYGIKATFFVV--G---S-WIERNPDLVKRIAE---AGHE-IGNHGYDHPDLQDLSLEELGAEIARAHDI 148 (267)
T ss_pred CcHHHHHHHHHcCCceEEEEe--h---H-hhHHCHHHHHHHHh---ccCe-ehhCcccCCCcccCCHHHHHHHHHHHHHH
Confidence 66778999998832 454443 2 3 55667766555554 6665 77778888888888888888899999999
Q ss_pred HHHHhCCCCCCceeEecCCCC-CchHHHHHHHhcCCc
Q psy7082 180 LNETFGRCGVPRVGWQIDPFG-HSKEMASMFAQMGYE 215 (528)
Q Consensus 180 l~~~FG~~~~p~v~w~pD~FG-hs~~lPqIl~~~Gi~ 215 (528)
+.+..| .. ..+|- -|.| .+...-.+.+..|+.
T Consensus 149 l~~~~g--~~-~~~~r-~p~g~~~~~~~~~~~~~g~~ 181 (267)
T COG0726 149 LKKITG--GR-PRGFR-PPYGSYNESSLALARRLGYR 181 (267)
T ss_pred HHHHhC--CC-CceEE-CCCCccCHHHHHHHHhCCCc
Confidence 999999 33 33344 4555 446777788888887
No 28
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=40.54 E-value=39 Score=24.29 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=28.6
Q ss_pred HHHHHhhhChHH-HHHHHHHHHCCCeEEecccccc-ccCC
Q psy7082 125 FSMWWKEQNNAT-KEMVRKLVNTGRLEFTGGAWAM-NDEA 162 (528)
Q Consensus 125 l~~W~~~~~p~~-~~~vk~LV~~GrlE~vGGgwv~-~De~ 162 (528)
|..|+.+..+.. +.+.+++|++|++ .|+|--+. ++..
T Consensus 3 Ld~~L~~~~~~~sr~~a~~~I~~g~V-~VNg~~v~~~~~~ 41 (48)
T PF01479_consen 3 LDKFLSRLGLASSRSEARRLIKQGRV-KVNGKVVKDPSYI 41 (48)
T ss_dssp HHHHHHHTTSSSSHHHHHHHHHTTTE-EETTEEESSTTSB
T ss_pred HHHHHHHcCCcCCHHHHHHhcCCCEE-EECCEEEcCCCCC
Confidence 456666677775 9999999999999 88887776 5443
No 29
>PRK10148 hypothetical protein; Provisional
Probab=36.82 E-value=12 Score=34.23 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.7
Q ss_pred CceeEecCCCCCchHHH
Q psy7082 190 PRVGWQIDPFGHSKEMA 206 (528)
Q Consensus 190 p~v~w~pD~FGhs~~lP 206 (528)
++.||..|+||++|++-
T Consensus 123 ~~~g~v~D~fGi~W~l~ 139 (147)
T PRK10148 123 HGFGKVTDKFGVPWMIN 139 (147)
T ss_pred hccEEEECCCCCEEEEE
Confidence 58889999999999763
No 30
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=31.87 E-value=60 Score=24.65 Aligned_cols=43 Identities=7% Similarity=0.002 Sum_probs=29.7
Q ss_pred hHHHHHHhhhCh-HHHHHHHHHHHCCCeEEeccccc-cccCCCCCH
Q psy7082 123 GFFSMWWKEQNN-ATKEMVRKLVNTGRLEFTGGAWA-MNDEATAHY 166 (528)
Q Consensus 123 ~~l~~W~~~~~p-~~~~~vk~LV~~GrlE~vGGgwv-~~De~l~s~ 166 (528)
.-+..|+.+... ..+.++++++++|++ .|+|--+ .+..-+..|
T Consensus 9 ~rLd~~L~~~~~~~SR~~~k~li~~G~V-~VNg~~~~~~~~~l~~G 53 (59)
T TIGR02988 9 ITLGQLLKELGIIDSGGQAKWFLQENEV-LVNGELENRRGKKLYPG 53 (59)
T ss_pred HHHHHHHHHcCCccCHHHHHHHHHcCCE-EECCEEccCCCCCCCCC
Confidence 336677776532 168999999999999 8888876 444444333
No 31
>PF12395 DUF3658: Protein of unknown function ; InterPro: IPR022123 This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with PF08874 from PFAM. There are two completely conserved residues (D and R) that may be functionally important.
Probab=30.51 E-value=1e+02 Score=26.89 Aligned_cols=68 Identities=21% Similarity=0.369 Sum_probs=42.7
Q ss_pred EEEEeecccCCccccchhHHheecCCCCCchhhHHHHHHHHHHHHhcCCCCcEEEecchHHHHHHhhhChHHHHHHHHHH
Q psy7082 65 NVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSNPDRRFIQVETGFFSMWWKEQNNATKEMVRKLV 144 (528)
Q Consensus 65 ~VhlV~HSH~D~gWl~t~~ey~~~~~~~i~~~~v~~il~~vl~~L~~~p~~kF~~~E~~~l~~W~~~~~p~~~~~vk~LV 144 (528)
+|.=++-.|.|..-+...+.-+ .+..+++-.++..++... + +||.. -|+++||
T Consensus 40 ~i~sv~ed~yD~~Il~~~~~~~---------~~~arvIg~vl~~~~~~i------~------D~f~~------~Ri~~Li 92 (111)
T PF12395_consen 40 KIVSVPEDYYDDFILEQAPDEF---------QKAARVIGEVLGHSDQGI------G------DWFLE------YRIRELI 92 (111)
T ss_pred eEEecChHHhhHHHHhcCCccc---------cHHHHHHHHHHHhcCcCC------C------hHHHH------HHHHHHH
Confidence 4556667777777776433222 245677777777753221 1 22222 3699999
Q ss_pred HCCCeEEeccccccc
Q psy7082 145 NTGRLEFTGGAWAMN 159 (528)
Q Consensus 145 ~~GrlE~vGGgwv~~ 159 (528)
++|+||+.|.--.|.
T Consensus 93 ~~G~le~~g~~~~mr 107 (111)
T PF12395_consen 93 SQGVLEIKGDPKDMR 107 (111)
T ss_pred HCCCEEEecCCCccc
Confidence 999999998765544
No 32
>PHA03393 odv-e66 occlusion-derived virus envelope protein E66; Provisional
Probab=27.12 E-value=1.4e+02 Score=34.35 Aligned_cols=109 Identities=22% Similarity=0.341 Sum_probs=69.5
Q ss_pred cccchhHHheecCCCCCchhhHHHHHHHH-HHHHhc--CCCCcEEEecchH--HHHHHhhhChHHHHHHHHHHHCCCeEE
Q psy7082 77 GWLKTVEEYYTGGGDPKTPHSVRKIIGST-VAALNS--NPDRRFIQVETGF--FSMWWKEQNNATKEMVRKLVNTGRLEF 151 (528)
Q Consensus 77 gWl~t~~ey~~~~~~~i~~~~v~~il~~v-l~~L~~--~p~~kF~~~E~~~--l~~W~~~~~p~~~~~vk~LV~~GrlE~ 151 (528)
.=|..||+||. ++|... ...-+| +|.+.|.-++..| |+-| .. .++--.-++-|+.-|=-
T Consensus 54 ~~L~~FE~yy~------------~TL~~~f~qkaeki~nptr~f~~d~~iF~~L~Pw-~s-a~dFgt~~hTLigY~vr-- 117 (682)
T PHA03393 54 DDLDTFERYYK------------NTLTQKFLQKAEKIANPTRQFSDDDNIFDGLSPW-TS-ANDFGTLCHTLIGYCVR-- 117 (682)
T ss_pred hHHHHHHHHHH------------HHHHHHHHhhhhhhcCCcccccCCCceecCCccc-cC-HHHHHHHHHHHHhheEE--
Confidence 34688999984 333333 334444 7898898777665 5554 21 22333445555554432
Q ss_pred eccccccccCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCceeEecCCCC-------CchHHHHHH
Q psy7082 152 TGGAWAMNDEATAHYASILDGFSLGLRLLNETFGRCGVPRVGWQIDPFG-------HSKEMASMF 209 (528)
Q Consensus 152 vGGgwv~~De~l~s~EslIrql~~G~~~l~~~FG~~~~p~v~w~pD~FG-------hs~~lPqIl 209 (528)
|..++.++---..|..+|..|.+.+.+++. .++. ++-.|+| ++-+||..+
T Consensus 118 ----y~~~~d~lY~d~~LA~nL~~aL~~I~~~LP--~p~p--~~qaPWG~~~dWy~FsItmPE~~ 174 (682)
T PHA03393 118 ----YNNPNDALYQDPELAYNLINALRLIYSHLP--DPAP--HQQAPWGPVADWYHFSITMPECF 174 (682)
T ss_pred ----ecCCCccccCCHHHHHHHHHHHHHHHhcCC--CCCc--ccCCCCCCcCceeeEEccHHHHH
Confidence 466666777778899999999999999988 3332 2445555 777888866
No 33
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=23.98 E-value=3.1e+02 Score=24.78 Aligned_cols=47 Identities=9% Similarity=0.211 Sum_probs=31.2
Q ss_pred hcCCCceeEeec-CCCCcc-chHHHHHHHHHHHHHHHhcccCCCcceEEEcC
Q psy7082 305 QFRSNNIPALFG-GDFTYQ-EAEYYYRSLDKMIKYVNNMQINGSKVNLLYST 354 (528)
Q Consensus 305 ~~~t~~iL~~~G-~Df~~~-~a~~~~~~l~~li~~~N~~~~~~~~~~v~~ST 354 (528)
....+.+++..| .|.... +.++..+++.++++.+.+.. +..++...+
T Consensus 49 ~~~pd~v~i~~G~ND~~~~~~~~~~~~~~~~l~~~~~~~~---p~~~vi~~~ 97 (174)
T cd01841 49 QKNPSKVFLFLGTNDIGKEVSSNQFIKWYRDIIEQIREEF---PNTKIYLLS 97 (174)
T ss_pred hcCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHHHHC---CCCEEEEEe
Confidence 346678888888 354332 45667889999998886643 355655554
No 34
>PRK12465 xylose isomerase; Provisional
Probab=23.64 E-value=71 Score=34.49 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHHHhhc-C-CCceeEeecCCCCccchHHHHHHHHHHHHHHHhcccCCCcceEEEcChHHHHH
Q psy7082 287 NAPYLAKEYLKWVQEQAAQF-R-SNNIPALFGGDFTYQEAEYYYRSLDKMIKYVNNMQINGSKVNLLYSTPSCYIK 360 (528)
Q Consensus 287 n~~~~~~~~~~~~~~~a~~~-~-t~~iL~~~G~Df~~~~a~~~~~~l~~li~~~N~~~~~~~~~~v~~ST~~~Yf~ 360 (528)
..+.+++...+.+++....| . ++.=++|.|.+.. +..+|++++++++.+.. +..++++.+.|+.-|..
T Consensus 86 ~Ak~k~daaFEf~~kLG~~~~~FHD~D~~Peg~s~~-----E~~~nld~iv~~~k~~~-~~tGikllw~TaNlFs~ 155 (445)
T PRK12465 86 RAEAKSDAAFEFFTKLGVPYYCFHDIDLAPDADDIG-----EYESNLKHMVGIAKQRQ-ADTGIKLLWGTANLFSH 155 (445)
T ss_pred HHHHHHHHHHHHHHHhCCCeeeccccccCCCCCCHH-----HHHHHHHHHHHHHHHHh-hhhCceeeeeccccccC
Confidence 35566776666677665443 2 2333678886654 46778999999887754 45789999999887743
No 35
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=21.51 E-value=80 Score=26.89 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=20.6
Q ss_pred HHHhhhChHHHHHHHHHHHCCCe
Q psy7082 127 MWWKEQNNATKEMVRKLVNTGRL 149 (528)
Q Consensus 127 ~W~~~~~p~~~~~vk~LV~~Grl 149 (528)
+-+...+|+.+++|+..|+-|+|
T Consensus 3 ~li~~mtPevY~rL~~AVElGKW 25 (93)
T PF07023_consen 3 QLIDSMTPEVYERLKQAVELGKW 25 (93)
T ss_pred HHHHhCCHHHHHHHHHHHHhCcC
Confidence 44667899999999999999999
No 36
>PRK04517 hypothetical protein; Provisional
Probab=20.83 E-value=90 Score=30.63 Aligned_cols=23 Identities=22% Similarity=0.589 Sum_probs=21.1
Q ss_pred HHHHHHhhhChHHHHHHHHHHHC
Q psy7082 124 FFSMWWKEQNNATKEMVRKLVNT 146 (528)
Q Consensus 124 ~l~~W~~~~~p~~~~~vk~LV~~ 146 (528)
.|.-||.+.+++.|++||+.++.
T Consensus 193 mL~~Wy~qAd~etrk~F~~w~~~ 215 (216)
T PRK04517 193 MLHFWYNKADAETKARFKAYVNQ 215 (216)
T ss_pred HHHHHHHHcCHHHHHHHHHHHhc
Confidence 69999999999999999999864
No 37
>PRK01904 hypothetical protein; Provisional
Probab=20.13 E-value=1e+02 Score=30.34 Aligned_cols=23 Identities=9% Similarity=0.355 Sum_probs=21.3
Q ss_pred HHHHHHhhhChHHHHHHHHHHHC
Q psy7082 124 FFSMWWKEQNNATKEMVRKLVNT 146 (528)
Q Consensus 124 ~l~~W~~~~~p~~~~~vk~LV~~ 146 (528)
.|.-||.+.+++.|++|++.+.+
T Consensus 195 mL~~Wy~qAd~etrk~F~~w~~~ 217 (219)
T PRK01904 195 QLQYWFQQADKETQTRFLNWAKK 217 (219)
T ss_pred HHHHHHHHcCHHHHHHHHHHHhh
Confidence 59999999999999999999865
No 38
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.07 E-value=2.5e+02 Score=24.86 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=29.3
Q ss_pred cCCCceeEeec-CCCCc-cchHHHHHHHHHHHHHHHhcccCCCcceEEEcC
Q psy7082 306 FRSNNIPALFG-GDFTY-QEAEYYYRSLDKMIKYVNNMQINGSKVNLLYST 354 (528)
Q Consensus 306 ~~t~~iL~~~G-~Df~~-~~a~~~~~~l~~li~~~N~~~~~~~~~~v~~ST 354 (528)
.+.+.+.+++| .|... ...+...+++.++++.+-+.. +++.+.+.+
T Consensus 39 ~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~---p~~~ii~~~ 86 (157)
T cd01833 39 AKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAAN---PDVKIIVAT 86 (157)
T ss_pred CCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHhC---CCeEEEEEe
Confidence 45667788888 45543 245667788888888776543 455555544
Done!