RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7082
(528 letters)
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase,
golgi apparatus, membrane, signal-anchor, transmembrane;
HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1
b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A*
3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A*
1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A*
2alw_A* 2f18_A* ...
Length = 1045
Score = 352 bits (903), Expect = e-110
Identities = 115/521 (22%), Positives = 201/521 (38%), Gaps = 86/521 (16%)
Query: 31 YRRKLADIKYPRVRVKRPDTCSYQACHPVKPDHINVHIIPHSHDDMGWLKTVEEYYTGGG 90
Y R V + + Y + V ++PHSH+D GW++T EEYY
Sbjct: 49 YDRMSFKDIDGGVWKQGWN-IKYDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHD- 106
Query: 91 DPKTPHSVRKIIGSTVAALNSNPDRRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLE 150
+ I+ + + L+ NP+ +FI E +F+ ++ + K ++ +V G+LE
Sbjct: 107 -------TKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLE 159
Query: 151 FTGGAWAMNDEATAHYASILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFA 210
F G W M DEA +H+ ++L + G L + P W I PFGHS M +
Sbjct: 160 FVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVT--PTASWAIAPFGHSPTMPYILQ 217
Query: 211 QMGYEGFMFSRMDYQDLSKRQKEKGMQMLWEASADLGKSSHIFTEMI-NNVYNPPSGFCF 269
+ G++ + R Y + +++ ++ LW D + +FT M+ Y+ P
Sbjct: 218 KSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGP 277
Query: 270 DILCHIEF---------------IDDETSSGYNAPYLAKEYLKWVQEQAAQFRSNNIPAL 314
D +F + T S N + + +++A +R+N +
Sbjct: 278 DPKVCCQFDFKRMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIP 337
Query: 315 FGGDFTYQEAEYY---YRSLDKMIKYVNNMQINGSKVNLLYSTPSCYIKAVH----NSGI 367
G DF +++ + + +++ +++N+ V + T Y AVH
Sbjct: 338 LGDDFRFKQNTEWDVQRVNYERLFEHINSQA--HFNVQAQFGTLQEYFDAVHQAERAGQA 395
Query: 368 TLPTKQDDFFPYGSGKHAYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIY 427
PT DFF Y YW+G++TSRP KR +R + ++
Sbjct: 396 EFPTLSGDFFTYADRSDNYWSGYYTSRPYHKRMDRVLMHYVRA----------------- 438
Query: 428 SEDLSCEPSETWDKFAINVYNALGRTVNRYVCKQLYVLSNLKSHSSHHHEDDLNVLREAM 487
+ L + + + L R +
Sbjct: 439 -------------------------------AEMLSAWHSWDGMARIE--ERLEQARREL 465
Query: 488 GVLQHHDGITGTAKQHPSNNYAELIHNGLAACEKVANDAFQ 528
+ QHHDGITGTAK H +Y + + L AC+ V +
Sbjct: 466 SLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVY 506
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
c.6.2.1
Length = 298
Score = 303 bits (778), Expect = e-100
Identities = 144/296 (48%), Positives = 200/296 (67%), Gaps = 3/296 (1%)
Query: 53 YQACHPVKPDHINVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSN 112
Y+ C VKPD +NVH++PH+HDD+GWLKTV++Y+ G + P V+ I+ S +++L +N
Sbjct: 3 YKTCPKVKPDMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLAN 62
Query: 113 PDRRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDG 172
P RRFI VE FFS WW++Q NAT+++VR+LV GRLEF G W MNDEAT HY +I+D
Sbjct: 63 PTRRFIYVEIAFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQ 122
Query: 173 FSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDYQDLSKRQK 232
+LGLR L ETFG G PRV W IDPFGHS+E AS+FAQMG++GF F R+DYQD R+K
Sbjct: 123 MTLGLRFLEETFGSDGRPRVAWHIDPFGHSREQASLFAQMGFDGFFFGRLDYQDKKVRKK 182
Query: 233 EKGMQMLWEASADLGKSSH-IFTEMINNVYNPPSGFCFDILCH-IEFIDDETSSGYNAPY 290
M+ +W AS L + +FT ++ N+YNPP G C+D+LC ++D S YNA
Sbjct: 183 TLQMEQVWRASTSLKPPTADLFTSVLPNMYNPPEGLCWDMLCADKPVVEDTRSPEYNAKE 242
Query: 291 LAKEYLKWVQEQAAQFRSNNIPALFGGDFTYQEAEYYYRSLDKMIKYVN-NMQING 345
L + +LK +Q +R+ + G DF Y+ A ++++LDK+I+ VN + NG
Sbjct: 243 LVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENANTWFKNLDKLIQLVNAQQRANG 298
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.55A {Enterococcus faecalis}
Length = 899
Score = 226 bits (577), Expect = 4e-65
Identities = 66/473 (13%), Positives = 143/473 (30%), Gaps = 99/473 (20%)
Query: 64 INVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSNPDRRFIQVE-T 122
V+I+ HSH D W EE++ + +++ + + + ++P+ ++
Sbjct: 7 KKVYIVSHSHWDREWYLPYEEHHMR---------LIELVDNVLDLIENDPEFNSFHLDGQ 57
Query: 123 GFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRLLNE 182
+ + KE V+K V G+L+ G + + D+ S + +G ++
Sbjct: 58 TIILDDYLQVRPEKKEAVKKAVQAGKLKI-GPFYILQDDFLISSESNVRNMLIGHL-ESQ 115
Query: 183 TFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSR------MDYQDLSKRQKEKGM 236
+G ++G+ D FG+ + M F R D Q L +
Sbjct: 116 KWG--APVQLGYFPDTFGNMGQTPQMMQLANLPAAAFGRGVKPIGFDNQVLESDYSSQYS 173
Query: 237 QMLWEASADLGKSSHIFTEMINNVYNPPSGFCFDILCHIEFIDDETSSGYNAPYLAKEYL 296
+M WE + IF + N Y+ + + +
Sbjct: 174 EMWWEGP----DQTKIFGLLFANWYSNGNEIPSEK-----------------EAAIAFWK 212
Query: 297 KWVQEQAAQFRSNNIPALFGGDFTYQEAEYYYRSLDKMIKYVNNMQINGSKVNLLYSTPS 356
+ + + +N++ + G D + + + K I N + + ++S
Sbjct: 213 QKLADVERYASTNHLLMMNGVDHQPVQRD-----ITKAIALANELF---PEYEFIHSNFD 264
Query: 357 CYIKAVHNS-GITLPTKQDDFFPYGSGKHAYWTGFFTSRPALKRYERFGHNMLQESNEAF 415
Y+KAV L T + + ++R LK++ L+
Sbjct: 265 DYLKAVQEELPEDLGTVTGELTSQETDGWYTLANTSSARVYLKQWNTKVQRQLEN----- 319
Query: 416 RKQPWLSPSSIYSEDLSCEPSETWDKFAINVYNALGRTVNRYVCKQLYVLSNLKSHSSHH 475
+ + L ++ + H
Sbjct: 320 ------------------------------------------IAEPLAAMAYEVTGDYPH 337
Query: 476 HEDDLNVLREAMGVLQHHDGITGTAKQHPSNNYAELIHNGLAACEKVANDAFQ 528
D + + + HD I G + N +A++A +
Sbjct: 338 --DQFDYAWKTLLQNHPHDSICGCSVDEVHRGMMTRFENANDVGHFLADEATR 388
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase;
1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Length = 923
Score = 224 bits (571), Expect = 3e-64
Identities = 63/473 (13%), Positives = 137/473 (28%), Gaps = 100/473 (21%)
Query: 65 NVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSNPDRRFIQVE-TG 123
VHII HSH D W E+++ + +I + ++PD ++
Sbjct: 27 KVHIISHSHWDREWYMAYEQHHMR---------LINLIDDLLEVFQTDPDFHSFHLDGQT 77
Query: 124 FFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRLLNET 183
+ + + +R+ + +G+L G + + D+ S + +G +
Sbjct: 78 IILDDYLKVRPEREPEIRQAIASGKLRI-GPFYILQDDFLTSSESNVRNMLIGKEDCDR- 135
Query: 184 FGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSR-------MDYQDLSKRQKEKGM 236
+G +G+ D FG+ + + + G + F R + D S++ +
Sbjct: 136 WG--ASVPLGYFPDTFGNMGQTPQLMLKAGLQAAAFGRGIRPTGFNNQVDTSEKYSSQFS 193
Query: 237 QMLWEASADLGKSSHIFTEMINNVYNPPSGFCFDILCHIEFIDDETSSGYNAPYLAKEYL 296
++ W+ +S I + N Y+ + F D
Sbjct: 194 EISWQGP----DNSRILGLLFANWYSNGNEIPTTEAEARLFWD----------------- 232
Query: 297 KWVQEQAAQFRSNNIPALFGGDFTYQEAEYYYRSLDKMIKYVNNMQINGSKVNLLYSTPS 356
K + + + ++ + G D + + + K I N + ++S
Sbjct: 233 KKLADAERFASTKHLLMMNGCDHQPVQLD-----VTKAIALANQLY---PDYEFVHSCFE 284
Query: 357 CYIKAVH-NSGITLPTKQDDFFPYGSGKHAYWTGFFTSRPALKRYERFGHNMLQESNEAF 415
Y+ + + L T Q + + ++R LK+ L+ E
Sbjct: 285 DYLADLADDLPENLSTVQGEITSQETDGWYTLANTASARIYLKQANTRVSRQLENITE-- 342
Query: 416 RKQPWLSPSSIYSEDLSCEPSETWDKFAINVYNALGRTVNRYVCKQLYVLSNLKSHSSHH 475
L ++ + + H
Sbjct: 343 ---------------------------------------------PLAAMAYEVTSTYPH 357
Query: 476 HEDDLNVLREAMGVLQHHDGITGTAKQHPSNNYAELIHNGLAACEKVANDAFQ 528
D L + + HD I G + +A +A +
Sbjct: 358 --DQLRYAWKTLMQNHPHDSICGCSVDSVHREMMTRFEKAYEVGHYLAKEAAK 408
>1o7d_B Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
a.8.3.1 c.6.2.1
Length = 84
Score = 107 bits (268), Expect = 2e-28
Identities = 34/63 (53%), Positives = 49/63 (77%)
Query: 347 KVNLLYSTPSCYIKAVHNSGITLPTKQDDFFPYGSGKHAYWTGFFTSRPALKRYERFGHN 406
+VN+LYSTP+CY+ ++ + ++ K+DDFFPY G + +WTG+F+SRPALKRYER +N
Sbjct: 2 RVNVLYSTPACYLWELNKANLSWSVKKDDFFPYADGPYMFWTGYFSSRPALKRYERLSYN 61
Query: 407 MLQ 409
LQ
Sbjct: 62 FLQ 64
>1o7d_C Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
a.8.3.1 b.30.5.6
Length = 159
Score = 63.6 bits (154), Expect = 3e-12
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 479 DLNVLREAMGVLQHHDGITGTAKQHPSNNYAELIHNGLAACEKVANDAFQ 528
D L EAM VLQHHD ++GT++QH +N+YA + G CE + ++A
Sbjct: 2 DSAPLNEAMAVLQHHDAVSGTSRQHVANDYARQLSEGWRPCEVLMSNALA 51
Score = 28.9 bits (64), Expect = 2.2
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 412 NEAFRKQPWLSPSSIYSEDL---SCEPSETWDKFAINVYNALGRTVNRYV 458
+ A L + L C ++T ++F + VYN LGR V+ V
Sbjct: 47 SNALAHLSGLKEDFAFCRKLNISICPLTQTAERFQVIVYNPLGRKVDWMV 96
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.9 bits (157), Expect = 4e-11
Identities = 62/389 (15%), Positives = 108/389 (27%), Gaps = 111/389 (28%)
Query: 167 ASILDGFSLGLRLLNET----------FGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEG 216
A + F+L ++L T + E+ S+ +
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLK----- 309
Query: 217 FMFSRMDYQDLSKRQKEKGMQMLWEASADLGKSSHIFTEMINNV--YNPPSGFCFDILCH 274
+ QDL R+ + + +S +N N D L
Sbjct: 310 --YLDCRPQDL-PREVLTTNPR---RLSIIAESIRDGLATWDNWKHVN------CDKLTT 357
Query: 275 IEFIDDETSSGYNA--PYLAKEYLKWVQEQAAQFRSN-NIPA----LFGGDFTYQEAEYY 327
I I+ S N P ++ ++ + F + +IP L D +
Sbjct: 358 I--IE----SSLNVLEPAEYRKMF----DRLSVFPPSAHIPTILLSLIWFDVIKSDVM-- 405
Query: 328 YRSLDKMIKYVNNMQINGSKVNLLYSTPSCYI---------KAVHNSGIT---LPTK--Q 373
++K+ KY + S PS Y+ A+H S + +P
Sbjct: 406 -VVVNKLHKY---SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 374 DDFFP-YGSGKHAYWTGFFTSRPALKRYERFGHNMLQ----ESNEAFRKQ----PWLSPS 424
DD P Y Y+ Y GH++ E FR +L
Sbjct: 462 DDLIPPYLDQ---YF------------YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 425 SIYSEDLSCEPSETWDKFA-INVYNALGRTVNRYVCKQ--LY------VLSNLKSHSSH- 474
+ + + Y Y+C Y +L L +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFY-------KPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 475 HHEDDLNVLREAMGVLQHHDGITGTA-KQ 502
++LR A+ + + I A KQ
Sbjct: 560 ICSKYTDLLRIAL--MAEDEAIFEEAHKQ 586
Score = 42.9 bits (100), Expect = 2e-04
Identities = 50/331 (15%), Positives = 94/331 (28%), Gaps = 113/331 (34%)
Query: 54 QACHPVKPDHINVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSNP 113
+ P ++ II S D L T + + D T II S++ L
Sbjct: 321 EVLT-TNPRRLS--IIAESIRDG--LATWDNWKHVNCDKLT-----TIIESSLNVLEPAE 370
Query: 114 DRR-------F---IQVETGFFSM-WWKEQNNATKEMVRKLVNTGRLEFTGGAWA----- 157
R+ F + T S+ W+ + +V KL +E
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE----KQPKESTI 426
Query: 158 ------------MNDEATAHYASILDGFSLGLRLLNETFGRCGVPRVGWQIDP-----FG 200
+ +E H SI+D +++ ++ P +D G
Sbjct: 427 SIPSIYLELKVKLENEYALH-RSIVDHYNIPKTFDSDDL---IPP----YLDQYFYSHIG 478
Query: 201 H---SKEMASMFAQMGYEGFMFSRMDYQDLS-KRQKEKGMQMLWEASA-------DLGK- 248
H + E +F + + D QK + W AS L
Sbjct: 479 HHLKNIEHPERMT-------LFRMV-FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 249 SSHI------FTEMINNVYNPPSGFCFDILCHIEFIDDETSSGYNAPYLAKEYLKWVQEQ 302
+I + ++N IL +F+ + + Y ++
Sbjct: 531 KPYICDNDPKYERLVN-----------AIL---DFLPKIEENLICSK-----YTDLLR-I 570
Query: 303 AAQFRSNNIPALFGGDFTYQEAEYYYRSLDK 333
A I ++EA ++ + +
Sbjct: 571 ALMAEDEAI---------FEEA---HKQVQR 589
Score = 34.8 bits (79), Expect = 0.081
Identities = 29/203 (14%), Positives = 61/203 (30%), Gaps = 64/203 (31%)
Query: 318 DFTYQEAEYYYRSL----------DKMIKYVNNMQ---INGSKVNLLYSTPSCYIKAVHN 364
DF E +Y Y+ + + K V +M ++ +++ + +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD-------- 59
Query: 365 SGITLPTKQDDFFPYGSGKHAYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPS 424
+WT S+ + ++F +L+ + +L S
Sbjct: 60 -----AVSGTLRL--------FWT--LLSKQE-EMVQKFVEEVLRIN------YKFLM-S 96
Query: 425 SIYSEDLSCEPSETWDKFAINVYNALGRTVNRYVCKQLYVLSNLKSHSSHHHEDDLNVLR 484
I +E +PS + I + L + K + S LR
Sbjct: 97 PIKTEQR--QPSMMTRMY-IEQRDRLYNDNQVFA----------KYNVSRLQP--YLKLR 141
Query: 485 EAMGVLQHHDGIT-----GTAKQ 502
+A+ L+ + G+ K
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKT 164
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 8e-11
Identities = 72/446 (16%), Positives = 127/446 (28%), Gaps = 148/446 (33%)
Query: 140 VRKLV-NTGRLEFTGGAWAMNDEATAHY--ASIL-DGFSLGLRLLNETFGRCGVPRVGWQ 195
R L + G LE + TA + AS L + F+ L E F
Sbjct: 6 TRPLTLSHGSLEHV---LLV---PTASFFIASQLQEQFNKILPEPTEGF---------AA 50
Query: 196 IDPFGHSKEMASMFAQMGYEGFMFSRMDYQDLSKRQKEKGMQMLWEASADLGKSSHIFTE 255
D E+ F +GY +S E + F +
Sbjct: 51 DDEPTTPAELVGKF--LGY------------VS-SLVEPS-----KVGQ--------FDQ 82
Query: 256 MINNVYNPPSGFCFDILC----H---IEFIDDETSSGYNAPYLAKEYLKWVQE------- 301
++N F L H + + + ++ L K Y+
Sbjct: 83 VLNLCLT---EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 302 -------QAAQFRSNNIPALFGGDFTYQ-EAEYYYRSLDKMIKYVNNMQINGSKVNLLYS 353
+A + + A+FGG Q + Y+ L LY
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGG----QGNTDDYFEELRD-----------------LYQ 178
Query: 354 TPSCYIKA-VHNSGITL------PTKQDDFFPYGSGKHAYW---------TGFFTSRP-- 395
T + + S TL + F G W + S P
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE-WLENPSNTPDKDYLLSIPIS 237
Query: 396 -------ALKRYERFGHNMLQESNEAFRKQPWLSPSSIYSEDL----SCEPSETWDKFAI 444
L Y L + R +L ++ +S+ L + +++W+ F +
Sbjct: 238 CPLIGVIQLAHYVVTAKL-LGFTPGELR--SYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 445 NVYNAL------GRTVNRYVCKQLYVLSNLKSH----SSHHHEDD----LNVLREAMGVL 490
+V A+ G C + Y ++L S ++E L++ +
Sbjct: 295 SVRKAITVLFFIG-----VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 491 QHHDGITGTAKQHPSNNYAEL-IHNG 515
Q + + T P+ E+ + NG
Sbjct: 350 QDY--VNKTNSHLPAGKQVEISLVNG 373
Score = 45.0 bits (106), Expect = 5e-05
Identities = 74/426 (17%), Positives = 127/426 (29%), Gaps = 130/426 (30%)
Query: 27 SDSDYRRKLADIKY--PRVRVKRPDTCSYQACHPVKPDHINVH-IIPHSHDDMGWLKTVE 83
+ DY +L D+ Y V V S + + ++ + + + WL+
Sbjct: 165 NTDDYFEELRDL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 84 ----EYYTGGGDPKTPHSVRKIIGST------VAA--LNSNPD--RRFIQVETGFFSMWW 129
+ Y P S +IG V A L P R +++ TG
Sbjct: 224 NTPDKDYLLS----IPISC-PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG------ 272
Query: 130 KEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRLLNETFGRCGV 189
+ LV T +W + ++L F +G+R E + +
Sbjct: 273 ---------HSQGLV-TAVAIAETDSWESFFVSVRKAITVL--FFIGVRCY-EAYPNTSL 319
Query: 190 PRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDYQDLSKRQKEKGMQMLWEASADLGKS 249
P P S S+ G M S +L++ Q + + + ++ L
Sbjct: 320 P-------P---SILEDSLENNEGVPSPMLS---ISNLTQEQVQD---YVNKTNSHLPAG 363
Query: 250 SHIFTEMIN-----NVYNPPS---GFCFDIL----------CHIEFIDDE---------- 281
+ ++N V PP G + I F E
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF--SERKLKFSNRFL 421
Query: 282 -TSSGYNAPYL--AKEYL-KWVQEQAAQFRSN--NIPALF----GGDFTYQEAEYYYRSL 331
+S +++ L A + + K + + F + IP ++ G D R L
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-VYDTFDGSDL---------RVL 471
Query: 332 DKMIKYVNNMQINGSKVNLLYSTPSCYIKAVHNSGIT--LPTKQDDFFPYG-SGKHAYWT 388
I+ V+ + P + T L DF P G SG
Sbjct: 472 SGS--------ISERIVDCIIRLP-VKWETTTQFKATHIL-----DFGPGGASG-----L 512
Query: 389 GFFTSR 394
G T R
Sbjct: 513 GVLTHR 518
Score = 44.3 bits (104), Expect = 1e-04
Identities = 86/638 (13%), Positives = 176/638 (27%), Gaps = 235/638 (36%)
Query: 4 LRSTVICVGVIVVSFVLISSFYLSDSDYRRK-LADIKYPRVRVKRPDTCS---------- 52
R + G + ++ ++ + S + + + P D +
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 53 -YQACHPVKPDHINVHIIPHSHDDMGWLKTV----EEYYTGGGDPKTPHSVRKIIGSTVA 107
Y + V+P + D + L E Y G D H++ A
Sbjct: 66 GYVS-SLVEPSKVG------QFDQV--LNLCLTEFENCYLEGND---IHAL-------AA 106
Query: 108 ALNSNPDRRFIQVETGFFSMWWKEQNNATKEMVRK----LVNTGRLEFTGGAWAMNDEAT 163
L D ++ KE+++ + R A+
Sbjct: 107 KLLQENDTTLVKT----------------KELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 164 AHYASILDGFSLGLRLLNETFGRCGVPRVGWQ---IDPFGHSKEMASMFAQMGYEGFMFS 220
A + ++ FG G Q D F +E+ + Y+
Sbjct: 151 EGNAQL---VAI--------FG--G------QGNTDDYF---EELRDL-----YQ----- 178
Query: 221 RMDYQDLSKRQKEKGMQMLWEASADLGKSSHIFTEMINNVYN--------PPSGF----- 267
Y L + + L E + +FT+ + N+ P +
Sbjct: 179 --TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIP 235
Query: 268 ------------CFDILCHI------EFID---------------------DETSSGYNA 288
+ + + E D S + +
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 289 PYLAKEYLKWV----QEQAAQFRSNNIPALFGGDFTYQEAE---------------YYYR 329
A L ++ E + + ++P +++
Sbjct: 296 VRKAITVLFFIGVRCYE---AYPNTSLPPS-----ILEDSLENNEGVPSPMLSISNLTQE 347
Query: 330 SLDKMIKYVNNMQINGSKVNL-LYSTPSCYIKAVHNSGITLPTKQDDFFP---YGSG--- 382
+ + N+ G +V + L + + V SG P YG
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLV--V--SG----------PPQSLYGLNLTL 393
Query: 383 -KHAYWTGFFTSR-PALKRYERFGHNMLQESNEAFRKQPWLSPS-SIYSEDLSCEPSETW 439
K +G SR P +R +F + L + F L P+ + ++DL + + ++
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVA-SPFH-SHLLVPASDLINKDLV-KNNVSF 450
Query: 440 DK--FAINVYN--------ALGRTVNRYVCKQLYVL-----SNLKSHSSHHHEDDLNVL- 483
+ I VY+ L +++ + + L + + ++H +L
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH-------ILD 503
Query: 484 -----REAMGVLQHH--DG------ITGTAKQHPSNNY 508
+GVL H DG + GT +P ++Y
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 33.1 bits (75), Expect = 0.26
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 27/100 (27%)
Query: 155 AWAMNDEATAHYASILDGFSLGLRLLNETFGRCGVPRVGWQIDP------FG--HSKEMA 206
W + A H+ GFS+ L ++ +P FG K +
Sbjct: 1645 VW---NRADNHFKDTY-GFSI-LDIVIN--------------NPVNLTIHFGGEKGKRIR 1685
Query: 207 SMFAQMGYEGFMFSRMDYQDLSKRQKEKGMQMLWEASADL 246
++ M +E + ++ + + K E + + L
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP:
a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*
Length = 659
Score = 52.7 bits (126), Expect = 2e-07
Identities = 24/161 (14%), Positives = 47/161 (29%), Gaps = 27/161 (16%)
Query: 64 INVHIIPHSHDDMG-WLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSNPDRRFIQVET 122
IN H+H +G + EE Y + + L P+ + +
Sbjct: 4 INFIFGIHNHQPLGNFGWVFEEAY------------NRSYRPFMEILEEFPEMKVNVHFS 51
Query: 123 GFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSL-----GL 177
G W +E +++R L+ G+LE + + + L
Sbjct: 52 GPLLEWIEENKPDYLDLLRSLIKRGQLEIVVAGFYEPV------LAAIPKEDRLVQIEML 105
Query: 178 RLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFM 218
+ G + W + E+ + G E +
Sbjct: 106 KDYARKLGY--DAKGVWLTERV-WQPELVKSLREAGIEYVV 143
>2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga
maritima} SCOP: a.8.3.3 c.6.2.4
Length = 528
Score = 32.9 bits (74), Expect = 0.25
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 128 WWKEQNNATKEMVRKLVNTGRLEFTGGAWA------MNDEATAHYASILDGFSLGLRLLN 181
++ + E +K TG+LE A I ++G++
Sbjct: 116 VFRSYDGNILEGFKKYQETGKLEIVTCNATHAFLPLYQMYPEVVNAQI----TVGVKNYE 171
Query: 182 ETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFM 218
+ + PR W + G+ + + AQ E F
Sbjct: 172 KHMKK--HPRGIW-LAECGYYQGLDLYLAQNNVEYFF 205
>2xes_A Protein PAT1 homolog 1; mRNA decapping, P-bodies, RNA binding
protein; 2.10A {Homo sapiens} PDB: 2xer_A 2xeq_A
Length = 248
Score = 31.5 bits (71), Expect = 0.58
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 426 IYSEDLSCEPSE--TWDKFAINVYNALGRTVNRYVCKQLYVLSNLKSHSSHH-HEDDLNV 482
+ S D + E ++ W + L R + K + + +NL S S + LN+
Sbjct: 180 LQSSDPATESTQNNQWTEVMFMATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNL 239
Query: 483 LREAMGVLQ 491
L + ++Q
Sbjct: 240 LETKLQLVQ 248
>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS,
bacterial, thiolase fold, beta-alpha-beta-alpha fold,
catalytic triad; HET: 15P; 2.22A {Streptomyces
coelicolor} SCOP: c.95.1.2 c.95.1.2
Length = 382
Score = 31.6 bits (72), Expect = 0.63
Identities = 5/46 (10%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 67 HIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSN 112
++IP + D + + + D + P ++ + + +
Sbjct: 221 YLIPKTEDWIMY-DVKATGFHFLLDKRVPATMEPLAPALKELAGEH 265
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET:
XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3
PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A*
3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
Length = 393
Score = 30.2 bits (67), Expect = 1.8
Identities = 27/177 (15%), Positives = 50/177 (28%), Gaps = 25/177 (14%)
Query: 171 DGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDYQDLSKR 230
D FS GL T G G E A++G G F D
Sbjct: 8 DKFSFGLW----TVGWQARDAFGDATRTALDPVEAVHKLAEIGAYGITFHDDDLVPFGSD 63
Query: 231 QKEKGMQMLWEASADLGKSSHIFTEMINNVYNPPSGFCFDILCHIEFIDDETSSGYNAPY 290
+ + K + T +I + ++ H F D +S +
Sbjct: 64 AQT------RDGIIAGFKKALDETGLIVPMVTT------NLFTHPVFKDGGFTSNDRSVR 111
Query: 291 -LAKEYLKWVQEQAAQFRSNNI---PALFGGDFTYQ-----EAEYYYRSLDKMIKYV 338
A + + A+ + + G ++ + Y +L+ + +Y
Sbjct: 112 RYAIRKVLRQMDLGAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYS 168
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 2.3
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 8/31 (25%)
Query: 137 KEMVRKLVNTGRLEF----TGGAWAMNDEAT 163
K+ ++KL L+ + A A+ AT
Sbjct: 19 KQALKKL--QASLKLYADDSAPALAIK--AT 45
Score = 28.8 bits (63), Expect = 2.6
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 12/33 (36%)
Query: 333 KMIKYVNNMQINGS-KVNLLY---STPSCYIKA 361
+ +K ++ S K LY S P+ IKA
Sbjct: 20 QALK-----KLQASLK---LYADDSAPALAIKA 44
>3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_A
Length = 1299
Score = 30.2 bits (67), Expect = 2.3
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 296 LKWVQEQAAQFRSNNIPALFGGDFTYQEAEYYYRSLDKMIKYVNNMQINGS 346
K++ + PA +G +YY +L + + N+ +
Sbjct: 175 CKYITLYGYDPSRPSTPATYGKHRPTYATVFYYSTLPARSRLLANLAAGPT 225
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 29.5 bits (66), Expect = 2.7
Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 113 PDRRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDG 172
PD+ V + + + +EM R + + + T Y L
Sbjct: 91 PDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLTFDIRLAQRIWLYDYFPFLWE 150
Query: 173 FSLGLRLLNE---TFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYE 215
+L L+E RV PF +++ +FA +
Sbjct: 151 DALRFLPLDEQINLLQENTKRRVEAI--PFLLPHDLSDLFAAAAWR 194
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 28.9 bits (65), Expect = 4.3
Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 28/115 (24%)
Query: 222 MDYQDLSKRQKEKGMQMLWEASADLGKSSHIFT----EMINNVY--NPPSGF--CFDILC 273
MD + +S + + + + ++S+I E + Y N P GF F +
Sbjct: 174 MDLKGIS-------ISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFK 226
Query: 274 HIEFIDDETSSGYNAPYLAK---EYLKWVQEQAAQFRSNNIPALFGGDFTYQEAE 325
F+D T S K + +E Q + N+P FGG E++
Sbjct: 227 P--FLDPVTVS--------KIFILGSSYQKELLKQIPAENLPVKFGGKSEVDESK 271
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 28.6 bits (64), Expect = 5.6
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 30/120 (25%)
Query: 222 MDYQDLSKRQKEKGMQMLWEASADLGKSSHIFT----EMINNVY--NPPSGF--CFDILC 273
+D + +S + + + + I E + Y + P GF F ++
Sbjct: 189 LDLKGISLSN-------AYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVK 241
Query: 274 HIEFIDDETSSGYNAPYLAK---EYLKWVQEQAAQFRSNNIPALFGG--DFTYQEAEYYY 328
F+D T S K + +E Q N+P +GG ++YY
Sbjct: 242 P--FLDPVTVS--------KIFILGSSYKKELLKQIPIENLPVKYGGTSVLHNPNDKFYY 291
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 28.4 bits (64), Expect = 5.8
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 9/23 (39%)
Query: 296 LKWVQEQAAQFRSNNIPALFGGD 318
LKWV+E NI A FGGD
Sbjct: 166 LKWVRE--------NISA-FGGD 179
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 28.6 bits (64), Expect = 5.9
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 9/23 (39%)
Query: 296 LKWVQEQAAQFRSNNIPALFGGD 318
++W+++ N A FGG+
Sbjct: 215 IRWLKD--------NAHA-FGGN 228
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces
olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A*
2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A
3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A*
1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Length = 386
Score = 28.3 bits (62), Expect = 6.6
Identities = 26/176 (14%), Positives = 47/176 (26%), Gaps = 23/176 (13%)
Query: 171 DGFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDYQDLSKR 230
D F+ GL T G G G P E A++G G F D
Sbjct: 8 DRFTFGLW----TVGWQGRDPFGDATRPALDPVETVQRLAELGAHGVTFHDDDLIPFGSS 63
Query: 231 QKEKGMQMLWEASADLGKSSHIFTEMINNVYNPPSGFCFDILCHIEFIDDETSSGYNAPY 290
E+ + ++ + M + F + F T++ +
Sbjct: 64 DTERESH--IKRFRQALDATGMTVPMAT-----TNLFTHPVFKDGGF----TANDRDVRR 112
Query: 291 LAKEYLKWVQEQAAQFRSNNI---PALFGGDFTYQ-----EAEYYYRSLDKMIKYV 338
A + A + + G + + + D + +YV
Sbjct: 113 YALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEAFDLLGEYV 168
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 28.6 bits (64), Expect = 6.7
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 9/23 (39%)
Query: 296 LKWVQEQAAQFRSNNIPALFGGD 318
L+WV + NI A FGGD
Sbjct: 194 LEWVSD--------NI-ANFGGD 207
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 28.4 bits (64), Expect = 7.0
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 9/23 (39%)
Query: 296 LKWVQEQAAQFRSNNIPALFGGD 318
L+WV+E NI A FGGD
Sbjct: 171 LRWVKE--------NIAA-FGGD 184
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 28.5 bits (64), Expect = 7.2
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 9/23 (39%)
Query: 296 LKWVQEQAAQFRSNNIPALFGGD 318
L+WV++ I FGGD
Sbjct: 171 LRWVKQ--------YI-EQFGGD 184
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 28.1 bits (63), Expect = 8.4
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 9/23 (39%)
Query: 296 LKWVQEQAAQFRSNNIPALFGGD 318
+ WV+ NI FGGD
Sbjct: 171 IAWVKR--------NI-EAFGGD 184
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 28.1 bits (63), Expect = 9.3
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 9/23 (39%)
Query: 296 LKWVQEQAAQFRSNNIPALFGGD 318
L+WVQE NI A FGGD
Sbjct: 180 LQWVQE--------NI-AAFGGD 193
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.419
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,532,122
Number of extensions: 518676
Number of successful extensions: 1205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1181
Number of HSP's successfully gapped: 50
Length of query: 528
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 430
Effective length of database: 3,965,535
Effective search space: 1705180050
Effective search space used: 1705180050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.2 bits)