RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7082
(528 letters)
>g1o7d.3 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-mannosidase
{Cow (Bos taurus) [TaxId: 9913]}
Length = 330
Score = 316 bits (811), Expect = e-105
Identities = 159/332 (47%), Positives = 224/332 (67%), Gaps = 6/332 (1%)
Query: 53 YQACHPVKPDHINVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSN 112
Y+ C VKPD +NVH++PH+HDD+GWLKTV++Y+ G + P V+ I+ S +++L +N
Sbjct: 2 YKTCPKVKPDMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLAN 61
Query: 113 PDRRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDG 172
P RRFI VE FFS WW++Q NAT+++VR+LV GRLEF G W MNDEAT HY +I+D
Sbjct: 62 PTRRFIYVEIAFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQ 121
Query: 173 FSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDYQDLSKRQK 232
+LGLR L ETFG G PRV W IDPFGHS+E AS+FAQMG++GF F R+DYQD R+K
Sbjct: 122 MTLGLRFLEETFGSDGRPRVAWHIDPFGHSREQASLFAQMGFDGFFFGRLDYQDKKVRKK 181
Query: 233 EKGMQMLWEASADLGKS-SHIFTEMINNVYNPPSGFCFDILC-HIEFIDDETSSGYNAPY 290
M+ +W AS L + +FT ++ N+YNPP G C+D+LC ++D S YNA
Sbjct: 182 TLQMEQVWRASTSLKPPTADLFTSVLPNMYNPPEGLCWDMLCADKPVVEDTRSPEYNAKE 241
Query: 291 LAKEYLKWVQEQAAQFRSNNIPALFGGDFTYQEAEYYYRSLDKMIKYVNNMQINGSKVNL 350
L + +LK +Q +R+ + G DF Y+ A ++++LDK+I+ VN +VN+
Sbjct: 242 LVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENANTWFKNLDKLIQLVNAQ----IRVNV 297
Query: 351 LYSTPSCYIKAVHNSGITLPTKQDDFFPYGSG 382
LYSTP+CY+ ++ + ++ K+DDFFPY G
Sbjct: 298 LYSTPACYLWELNKANLSWSVKKDDFFPYADG 329
>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 381
Score = 291 bits (745), Expect = 1e-94
Identities = 83/353 (23%), Positives = 149/353 (42%), Gaps = 35/353 (9%)
Query: 52 SYQACHPVKPDHINVHIIPHSHDDMGWLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNS 111
Y + V ++PHSH+D GW++T EEYY + I+ + + L+
Sbjct: 39 KYDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQHD--------TKHILSNALRHLHD 90
Query: 112 NPDRRFIQVETGFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILD 171
NP+ +FI E +F+ ++ + K ++ +V G+LEF G W M DEA +H+ ++L
Sbjct: 91 NPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNVLL 150
Query: 172 GFSLGLRLLNETFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDYQDLSKRQ 231
+ G L + P W I PFGHS M + + G++ + R Y +
Sbjct: 151 QLTEGQTWLKQFMNVT--PTASWAIAPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELA 208
Query: 232 KEKGMQMLWEASADLGKSSHIFTEMI-NNVYNPPSGFCFD--ILCHIEF----------- 277
+++ ++ LW D + +FT M+ Y+ P D + C +F
Sbjct: 209 QQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSCP 268
Query: 278 --IDDETSSGYNAPYLAKEYLKWVQEQAAQFRSNNIPALFGGDFTYQEAE---YYYRSLD 332
+ T S N + + +++A +R+N + G DF +++ + +
Sbjct: 269 WKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYE 328
Query: 333 KMIKYVNNMQINGSKVNLLYSTPSCYIKAVH----NSGITLPTKQDDFFPYGS 381
++ +++N+ V + T Y AVH PT DFF Y
Sbjct: 329 RLFEHINSQA--HFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYAD 379
>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal
domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Length = 310
Score = 114 bits (287), Expect = 4e-29
Identities = 41/360 (11%), Positives = 92/360 (25%), Gaps = 57/360 (15%)
Query: 64 INVHIIPHSHDDMG-WLKTVEEYYTGGGDPKTPHSVRKIIGSTVAALNSNPDRRFIQVET 122
IN H+H +G + EE Y + + L P+ + +
Sbjct: 4 INFIFGIHNHQPLGNFGWVFEEAY------------NRSYRPFMEILEEFPEMKVNVHFS 51
Query: 123 GFFSMWWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGFSLGLRLLNE 182
G W +E +++R L+ G+LE + A L + +
Sbjct: 52 GPLLEWIEENKPDYLDLLRSLIKRGQLEIVVAGFYEPVLAAIPKEDRLVQIEMLKDYARK 111
Query: 183 TFGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDYQDLSKRQKEKGMQMLWEA 242
+ W + E+ + G E + +
Sbjct: 112 LGYD---AKGVWLTE-RVWQPELVKSLREAGIEYVVVDDYHFMS---------------- 151
Query: 243 SADLGKSSHIFTEMINNVYNPPSGFCFDILCHIEFIDDETSSGYNAPYLAKEYLKWVQEQ 302
+ + E + Y G + I+ + +
Sbjct: 152 -------AGLSKEELFWPYYTEDGGEVITVFPIDEKLRYLIPFRPVKKTIEYLESLTSDD 204
Query: 303 AAQFRSNNIPALFGGDFTYQEAEYYYRSLDKMIKYVNNMQINGSKVNLLYSTPSCYIKAV 362
++ + G F Y + ++ + + K+N T S Y+
Sbjct: 205 PSKV---AVFHDDGEKFGVWPGTYEWVYEKGWLREFFDAITSNEKIN--LMTYSEYLSKF 259
Query: 363 HNSGITLPTKQDDFFPYGSGKH-AYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWL 421
+ + P S + W+ + L+E + + + ++
Sbjct: 260 -------TPRGLVYLPIASYFEMSEWSLPAKQAKLFVEFVE----QLKEEGKFEKYRVFV 308
>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 111
Score = 72.7 bits (178), Expect = 2e-16
Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 50/143 (34%)
Query: 386 YWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIYSEDLSCEPSETWDKFAIN 445
YW+G++TSRP KR +R + ++
Sbjct: 3 YWSGYYTSRPYHKRMDRVLMHYVRA----------------------------------- 27
Query: 446 VYNALGRTVNRYVCKQLYVLSNLKSHSSHHHEDDLNVLREAMGVLQHHDGITGTAKQHPS 505
+ L + + + L R + + QHHDGITGTAK H
Sbjct: 28 -------------AEMLSAWHSWDGMARIE--ERLEQARRELSLFQHHDGITGTAKTHVV 72
Query: 506 NNYAELIHNGLAACEKVANDAFQ 528
+Y + + L AC+ V +
Sbjct: 73 VDYEQRMQEALKACQMVMQQSVY 95
>g1o7d.1 a.8.3.1 (B:385-422,C:431-487) Lysosomal alpha-mannosidase
{Cow (Bos taurus) [TaxId: 9913]}
Length = 95
Score = 70.8 bits (173), Expect = 8e-16
Identities = 42/145 (28%), Positives = 58/145 (40%), Gaps = 56/145 (38%)
Query: 384 HAYWTGFFTSRPALKRYERFGHNMLQESNEAFRKQPWLSPSSIYSEDLSCEPSETWDKFA 443
+ +WTG+F+SRPALKRYER +N LQ
Sbjct: 1 YMFWTGYFSSRPALKRYERLSYNFLQV--------------------------------- 27
Query: 444 INVYNALGRTVNRYVCKQLYVLSNLKSHSSHHHEDDLNVLREAMGVLQHHDGITGTAKQH 503
C QL + D L EAM VLQHHD ++GT++QH
Sbjct: 28 ---------------CNQLE--------ALAGPAGDSAPLNEAMAVLQHHDAVSGTSRQH 64
Query: 504 PSNNYAELIHNGLAACEKVANDAFQ 528
+N+YA + G CE + ++A
Sbjct: 65 VANDYARQLSEGWRPCEVLMSNALA 89
>g1o7d.2 b.30.5.6 (C:488-585,D:603-875,E:885-1007) Lysosomal
alpha-mannosidase {Cow (Bos taurus) [TaxId: 9913]}
Length = 490
Score = 35.1 bits (80), Expect = 0.019
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 432 SCEPSETWDKFAINVYNALGRTVNRYV 458
C ++T ++F + VYN LGR V+ V
Sbjct: 13 ICPLTQTAERFQVIVYNPLGRKVDWMV 39
>d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes
missouriensis [TaxId: 1866]}
Length = 392
Score = 31.8 bits (72), Expect = 0.22
Identities = 25/184 (13%), Positives = 45/184 (24%), Gaps = 55/184 (29%)
Query: 192 VGWQ-IDPFG-------HSKEMASMFAQMGYEGFMFSRMDY--------------QDLSK 229
VGWQ D FG E A++G G F D K
Sbjct: 16 VGWQARDAFGDATRTALDPVEAVHKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGFKK 75
Query: 230 RQKEKGMQMLWEASADLGKSSHIFTEMINNVYNPPSGFCFDILCHIEFIDDETSSGYNAP 289
E G+ + + +N D + Y
Sbjct: 76 ALDETGLIVPMVTTNLFTHPVFKDGGFTSN--------------------DRSVRRY--- 112
Query: 290 YLAKEYLKWVQEQAAQFRSNNI---PALFGGDFTYQ-----EAEYYYRSLDKMIKYVNNM 341
A + + A+ + + G ++ + Y +L+ + +Y +
Sbjct: 113 --AIRKVLRQMDLGAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDR 170
Query: 342 QING 345
Sbjct: 171 GYGL 174
>d2d4pa1 d.108.1.1 (A:1-130) Hypothetical protein TTHA1254 {Thermus
thermophilus [TaxId: 274]}
Length = 130
Score = 29.5 bits (66), Expect = 0.43
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 392 TSRPALKRYERFGHNMLQESNEAFR 416
S AL+ + R GH+ L E E
Sbjct: 23 VSLGALRFFARTGHSFLAEEGEEPM 47
>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 412
Score = 29.7 bits (66), Expect = 0.99
Identities = 14/188 (7%), Positives = 40/188 (21%), Gaps = 21/188 (11%)
Query: 128 WWKEQNNATKEMVRKLVNTGRLEFTGGAWAMNDEATAHYASILDGF----SLGLRLLNET 183
++ + RK G++E + + G+
Sbjct: 116 HFQRLSGDLVAAFRKAEEGGQVELITSNAT---HGYSPLLGYDEALWAQIKTGVSTYRRH 172
Query: 184 FGRCGVPRVGWQIDPFGHSKEMASMFAQMGYEGFMFSRMDYQDLSKRQKEKGMQML---- 239
F + P W + + + G + + G++
Sbjct: 173 FAK--DPTGFW-LPEMAYRPKGPWKPPVEGPPE-----GVRPGVDELLMRAGIRYTFVDA 224
Query: 240 --WEASADLGKSSHIFTEMINNVYNPPSGFCFDILCHIEFIDDETSSGYNAPYLAKEYLK 297
+ L + + + + + ET+ +
Sbjct: 225 HLVQGGEPLSPYGEAALGPVESQEATYHVHELESGLRVLARNPETTLQVWSADYGYPGEG 284
Query: 298 WVQEQAAQ 305
+E +
Sbjct: 285 LYREFHRK 292
>d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA
{Bacillus subtilis [TaxId: 1423]}
Length = 249
Score = 29.3 bits (66), Expect = 1.1
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 297 KWVQEQAAQFRSNNIPALFGGDFTYQEAEYYYRSLDKMIKYV-----NNMQINGSKVNLL 351
K ++E+ + + ++I FGG T E + +++ +Y ++I+ + +
Sbjct: 56 KDLEEKISTLKEHDITFFFGG--TLFEKYVSQKKVNEFHRYCTYFGCEYIEISNGTLPMT 113
Query: 352 YSTPSCYIKAVHNSGITLP 370
+ YI + + L
Sbjct: 114 NKEKAAYIADFSDEFLVLS 132
>d1ogla_ a.204.1.1 (A:) Type II deoxyuridine triphosphatase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 270
Score = 28.3 bits (62), Expect = 2.4
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 421 LSPSSIYSEDLSCEPSETWDKFAINVYNALG 451
+S + +E + W+K A +V++A G
Sbjct: 226 VSVEDVLNEG---TYLKAWEKIACSVFDAFG 253
>d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces
olivochromogenes [TaxId: 1963]}
Length = 386
Score = 28.0 bits (62), Expect = 2.9
Identities = 17/90 (18%), Positives = 23/90 (25%), Gaps = 22/90 (24%)
Query: 192 VGWQ-IDPFG-------HSKEMASMFAQMGYEGFMFSRMD--------------YQDLSK 229
VGWQ DPFG E A++G G F D + +
Sbjct: 17 VGWQGRDPFGDATRPALDPVETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRFRQ 76
Query: 230 RQKEKGMQMLWEASADLGKSSHIFTEMINN 259
GM + + N
Sbjct: 77 ALDATGMTVPMATTNLFTHPVFKDGGFTAN 106
>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 251
Score = 27.8 bits (62), Expect = 3.4
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 297 KWVQEQAAQFRSNNIPALFGGDFTYQEAEYYYRSLDKMIKYVNNMQIN 344
V+E+ ++ I GG T E Y D+ + +
Sbjct: 55 DVVKEKINYYKDWGIKVYPGG--TLFEYAYSKGKFDEFLNECEKLGFE 100
>d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain
b3728 [TaxId: 1663]}
Length = 393
Score = 27.7 bits (61), Expect = 3.5
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 22/90 (24%)
Query: 192 VGWQ-IDPFGH-------SKEMASMFAQMGYEGFMFSRMD--------------YQDLSK 229
VGW DPFG E A++G G F D D ++
Sbjct: 16 VGWTGADPFGVATRKNLDPVEAVHKLAELGAYGITFHDNDLIPFDATEAEREKILGDFNQ 75
Query: 230 RQKEKGMQMLWEASADLGKSSHIFTEMINN 259
K+ G+++ + +N
Sbjct: 76 ALKDTGLKVPMVTTNLFSHPVFKDGGFTSN 105
>d1u7ia_ d.32.1.7 (A:) Hypothetical protein PA1358 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 134
Score = 26.6 bits (58), Expect = 3.9
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 159 NDEATAHYASILDGFSLGLRLLNETFGRCGVPRVGWQIDPFGHS 202
N + ++ DG + L + F R W D FG S
Sbjct: 88 NAQIERLAEALSDGGKALMPLGDYGFS----QRFAWLADRFGVS 127
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.419
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,105,693
Number of extensions: 101971
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 28
Length of query: 528
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 439
Effective length of database: 1,185,626
Effective search space: 520489814
Effective search space used: 520489814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)