BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7083
(95 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEA 65
E YIA YPY S EPGDLTF + E I VT+K+ +WWTG+IGDR+G+FPSNYV P ++
Sbjct: 9 EEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIFPSNYVKPKDS 64
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
S +A Y + E GDL F + +VI + KK +NDWWTG + R G+FP+NYV
Sbjct: 2 SSPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 57
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
+A Y + +PGDL F + +VI + KK +NDWWTG + G+FP+NYV
Sbjct: 7 VALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 57
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 6 ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYE 64
+ ++ A + ++ E G+L F + +VI + K++ +WW G + +R G+FPSNYV PY
Sbjct: 1 HMETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVAPYN 60
Query: 65 AQ 66
+
Sbjct: 61 SN 62
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYVVPYEA 65
A + + T +L+F++ +VI+VT+ +E WW GT+ RTG FPSNYV +A
Sbjct: 13 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVREVKA 65
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQ 66
++ A + ++ E G+L F + +VI + K++ +WW G + +R G+FPSNYV PY +
Sbjct: 3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPYNSN 60
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPY 63
A + ++ E G+L F + +VI + K++ +WW G + +R G+FPSNYV PY
Sbjct: 7 ALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY 57
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
IA Y Y + +L+F++ ++I V K++ DWW G I TGLFPSNYV
Sbjct: 22 IAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 70
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 60
SQ A + + T +L+F++ +VI+VT+ +E WW GT RTG FPSNYV
Sbjct: 5 SQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
Length = 61
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 60
SQ A + + T +L+F++ +VI+VT+ +E WW GT RTG FPSNYV
Sbjct: 5 SQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4
And Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
Length = 59
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 60
A + + T +L+F++ +VI+VT+ +E WW GT RTG FPSNYV
Sbjct: 9 AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
I Y Y + +L F++ ++I V KE+ DWW G + + GLFPSNYV
Sbjct: 6 IGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYV 54
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 1 MKSLQELSQE--YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPS 57
++ ++++ Q+ Y A + +D E G+L F + + I+V + +WW G +TG+FP
Sbjct: 148 LRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPR 207
Query: 58 NYVVPYEAQV 67
NYV P V
Sbjct: 208 NYVTPVNRNV 217
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 60
IA Y + +T +L+F + +++ V +E D W+ + + G P NY+
Sbjct: 4 IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYI 53
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
A Y +++ E +L F EV+ V N WWTG + ++ GLFP+NYV P
Sbjct: 6 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
A Y +++ E +L F EV+ V N WWTG + ++ GLFP+NYV P
Sbjct: 8 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 57
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
S + A Y +++ E +L F EV+ V N WWTG + ++ GLFP+NYV P
Sbjct: 4 SVRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 59
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYVV 61
++EY +PY T +LTF + E+I++ KE WW G + + G+FP N+ V
Sbjct: 5 AKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAV 61
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 60
A + + T +L+ + ++IYVT+ +E WW GT+ RTG FPSNYV
Sbjct: 15 ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
A Y +++ E +L F EV+ V N WWTG + ++ GLFP+NYV P
Sbjct: 7 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 56
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
IA Y Y + +L+F++ ++I V K++ DWW G I TGLFPSNYV
Sbjct: 38 IAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 86
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYVVPYEAQVDQ 69
+ A Y ++ P +L + ++IY+T + +WW GT RTGL PSNYV +D
Sbjct: 17 FRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYVAEQAESIDN 75
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYVV 61
A Y ++ +PGDL F + I V K + DWW G + +TG+FP+NYV
Sbjct: 22 ALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVT 72
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRTGLFPSNYVV 61
A Y YD+ + +L+FN +++I + K++ + WWTG + + GLFP+NYV
Sbjct: 10 ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVT 58
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYVV 61
S + + A Y ++ P +L F + ++IY+T + +WW GT RTGL PSNYV
Sbjct: 6 SGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 60
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYVV 61
+ A Y ++ P +L F + ++IY+T + +WW GT RTGL PSNYV
Sbjct: 6 FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 56
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQV 67
Y A + +D E G+L F + + I+V + +WW G +TG+FP NYV P V
Sbjct: 4 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV 61
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With
A Herpesviral Ligand
Length = 65
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGT--IGDRTGLFPSNYVV 61
+A YPYD P DL+F + E + V ++ +WW + + G PSNYV
Sbjct: 11 VALYPYDGIHPDDLSFKKGEKMKVLEEHGEWWKAKSLLTKKEGFIPSNYVA 61
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
Y A + +D E G+L F + + I+V + +WW G +TG+FP NYV P
Sbjct: 4 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 56
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
A + +D E G+L F + + I+V + +WW G +TG+FP NYV P
Sbjct: 5 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 54
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3
Domain
Length = 58
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQ-DEVIYVTKKENDWWTGTIGDRTGLFPSNYVVP 62
EY A Y +D + GDL D+V + K +W+ G+ RTG+FP+NYV P
Sbjct: 3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKP 56
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1
Bound With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1
Bound With A Synthetic Peptide
Length = 70
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
A YP+ + + L FN+++VI V ++++ WW G + + G FP +YV
Sbjct: 17 ALYPWRAKKDNHLNFNKNDVITVLEQQDMWWFGEVQGQKGWFPKSYV 63
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
E +A Y Y + +L+F + +IYV KK +D W+ G + TGLFP NYV
Sbjct: 18 EKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 69
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ E +E +A Y Y PG++T + +++ + N DWW + DR G P+ YV
Sbjct: 1 MDETGKELVLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac
Protein
Length = 68
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
S Y+A Y + E DL ++I + + N DWW G I DR G FP+N+V
Sbjct: 6 SGNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFV 59
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVV 61
Y A + +D E G+L F + + I+V + +WW G +TG+FP NYV
Sbjct: 4 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVT 55
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein
States By Relaxation Dispersion Nmr
Length = 62
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 11 YYIAAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYV 60
+ A Y YD+ E +LTF D++I + ++DWW G + GLFPSNYV
Sbjct: 6 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 58
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 11 YYIAAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYV 60
+ A Y YD+ E +LTF D++I + ++DWW G + GLFPSNYV
Sbjct: 3 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 55
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
Length = 62
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYV 60
YI Y YD+ +LT E+I KK E W G + R G+FP N+V
Sbjct: 4 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 54
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG---TIGDRTGLFPSNYVVP 62
++A Y Y+S DL+F + E + V E DWW T G RTG PSNYV P
Sbjct: 3 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTG-RTGYIPSNYVAP 56
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 11 YYIAAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYV 60
+ A Y YD+ E +LTF D++I + ++DWW G + GLFPSNYV
Sbjct: 2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG---TIGDRTGLFPSNYVVPYEA 65
++A Y Y+S DL+F + E + V E DWW + G +TG PSNYV P ++
Sbjct: 88 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTG-QTGYIPSNYVAPSDS 144
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVV 61
A Y +++ E +LTF E+I V + +WW G TGLFPSN+V
Sbjct: 10 ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 58
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain
Of Cd2ap
Length = 57
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYV 60
YI Y YD+ +LT E+I KK E W G + R G+FP N+V
Sbjct: 3 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFV 53
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 6 ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
E +E +A Y Y P ++T + +++ + N DWW +GDR G P+ YV
Sbjct: 3 ETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYV 58
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG---TIGDRTGLFPSNYVVPYEA 65
++A Y Y+S DL+F + E + V E DWW T G +TG PSNYV P ++
Sbjct: 6 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTG-QTGYIPSNYVAPSDS 62
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ E +E +A Y Y P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 1 MDETGKELVLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
I + Y + +LT + E+I +KE+ WW G I R GLFP N+V
Sbjct: 5 IVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ E +E +A Y Y P ++T + +++ + N DWW + DR G P++YV
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYV 58
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
A Y +++ E +LTF E+I V + +WW G GLFPSN+V
Sbjct: 22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFV 69
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ E +E +A Y Y P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYV 58
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVV 61
A Y +++ E +LTF E+I V + +WW G GLFPSN+V
Sbjct: 22 AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVT 70
>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
Hypothetical Protein Sh3rf2
Length = 70
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIG---DRTGLFPSNYVVPYE 64
S ++A + Y + P +L + E I V K D W + RTG+FPS+YV+P
Sbjct: 6 SGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVS 65
Query: 65 A 65
Sbjct: 66 G 66
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYEA 65
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P ++
Sbjct: 6 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVDS 62
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn
Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn)
From Mus Musculus At 1.98 A Resolution
Length = 164
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYEA 65
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P ++
Sbjct: 7 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVDS 63
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Hexagonal Crystal Obtained In Sodium
Formate At Ph 6.5
Length = 62
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ E +E +A Y Y P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 1 MDETGKELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIG-DRTGLFPSNYVV 61
+A Y Y + +LT ++ ++I V K+N DWW G+IG + G FP+N+V
Sbjct: 10 VALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVA 60
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGT--IGDRTGLFPSNYVVPYEA 65
++A Y Y+S DL+F + E + V E DWW +TG PSNYV P ++
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS 61
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase
C-src, In Complex With Amp-pnp
Length = 452
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGT--IGDRTGLFPSNYVVPYEA 65
++A Y Y+S DL+F + E + V E DWW +TG PSNYV P ++
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS 61
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ E +E +A Y Y P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3
Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured
At Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ E +E +A Y Y P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 58
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGT--IGDRTGLFPSNYVVPYEA 65
++A Y Y+S DL+F + E + V E DWW +TG PSNYV P ++
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS 61
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYV 60
S++Y +PY++ +LT + +++ + K+ WW G + R G+FP N+V
Sbjct: 2 SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 57
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYV 60
S++Y +PY++ +LT + +++ + K+ WW G + R G+FP N+V
Sbjct: 8 SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 63
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG---TIGDRTGLFPSNYVVP 62
++A Y Y+S DL+F + E + V E DWW T G +TG PSNYV P
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTG-QTGYIPSNYVAP 63
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
Length = 64
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG---TIGDRTGLFPSNYVVP 62
++A Y Y+S DL+F + E + V E DWW T G +TG PSNYV P
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTG-QTGYIPSNYVAP 63
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 6 ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
E +E +A Y Y P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 3 ETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYV 58
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGTIGDRTGLFPSNYV 60
IA Y Y + +++F+ D++I + ++ WW G R GLFP+NYV
Sbjct: 13 IALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of
P67phox Complexed With The C-Terminal Tail Region Of
P47phox
Length = 62
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
A + Y++T+P DL F + ++I V K N+ W G + G+FP +V
Sbjct: 10 ALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYEA 65
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P ++
Sbjct: 6 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVDS 62
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide
P2l Corresponding To Residues 91-104 Of The P85 Subunit
Of Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYEA 65
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P ++
Sbjct: 8 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVDS 64
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYEA 65
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P ++
Sbjct: 4 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVDS 60
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ E +E +A Y Y P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAYV 58
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 16 YPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
+ + + P +LT + +++Y+ K+ + +W G R G+FP+NYV
Sbjct: 8 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 53
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYEA 65
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P ++
Sbjct: 3 FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVDS 59
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVP 62
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P
Sbjct: 3 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAP 56
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 6 ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
E +E +A Y Y P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 14 ETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 69
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVPYEA 65
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P ++
Sbjct: 8 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAPVDS 64
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3
Domain Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVP 62
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P
Sbjct: 4 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAP 57
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l
Mutant
Length = 62
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ E +E + Y Y P +LT + +++ + N DWW + DR G P+ Y+
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAYL 58
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein
[homo Sapiens]
Length = 72
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 3 SLQELSQEYYIAAYPYDSTEPGDLTFN-QDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
++ + + Y +A Y + + EP +L F D++ + E+ W G++ RTG+FP +V
Sbjct: 7 AMAQGALTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFV 65
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGTIGDRTGLFPSNYV 60
+A Y Y + +++F+ D++I + ++ WW G R GLFP+NYV
Sbjct: 14 VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 62
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTG---TIGDRTGLFPSNYVVPYEAQV 67
++A Y Y++T DL+F++ E + ++ DWW T G+ TG PSNYV P ++
Sbjct: 9 FVALYDYNATRWTDLSFHKGEKFQILDGDSGDWWEARSLTTGE-TGYIPSNYVAPVDSIQ 67
Query: 68 DQQ 70
+Q
Sbjct: 68 GEQ 70
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 18 YDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
Y PGDL FN+ +VI + ++ + +W+ G I +G+FP++ V
Sbjct: 16 YRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSV 59
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYV 60
+ +Y +PY++ +LT + +++ + K+ WW G + R G+FP N+V
Sbjct: 1 ASDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 56
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVP 62
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P
Sbjct: 18 FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAP 71
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVP 62
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P
Sbjct: 7 FVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAP 60
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
7
Length = 57
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+E +A Y Y P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 1 KELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 53
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG---TIGDRTGLFPSNYVVP 62
++A Y Y+S DL+F + E + V E DWW + G +TG PSNYV P
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTG-QTGYIPSNYVAP 58
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYV 60
S +Y +PY++ +LT + +++ + K+ WW G + R G+FP N+V
Sbjct: 6 SGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 61
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT-IGDRTGLFPSNYVVPY 63
+ E YIA + + + GDLTF + E++ V +K+ D WW GL P Y+ PY
Sbjct: 9 TGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPY 66
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+E +A Y Y P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 4 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 57
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTG---TIGDRTGLFPSNYVVPYEAQV 67
++A Y Y++T DL+F++ E + + DWW T G+ TG PSNYV P ++
Sbjct: 9 FVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGE-TGYIPSNYVAPVDSIQ 67
Query: 68 DQQ 70
+Q
Sbjct: 68 GEQ 70
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ E +E + Y Y P +LT + +++ + N DWW + DR G P+ Y+
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYL 58
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVP 62
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P
Sbjct: 4 FVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAP 57
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 31 DEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYE 64
D + + + E WW+GT+ ++ GLFPSN+V E
Sbjct: 27 DVIDVIEEVEEGWWSGTLNNKLGLFPSNFVKELE 60
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+E +A Y Y P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 4 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 57
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGTIGDRTGLFPSNYV 60
+A Y Y + +++F+ D++I + ++ WW G R GLFP+NYV
Sbjct: 21 VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 69
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVP 62
++A Y Y++ DL+F++ E + E DWW T G+ TG PSNYV P
Sbjct: 18 FVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYVAP 71
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRTGLFPSNYV 60
A Y YD+ +LTF + + I V +K+ WW G + + G P+NYV
Sbjct: 9 ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 56
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRTGLFPSNYV 60
A Y YD+ +LTF + + I V +K+ WW G + + G P+NYV
Sbjct: 8 ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 55
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 16 YPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
+ + + P +LT + +++Y+ K+ + +W G R G+FP+NYV
Sbjct: 14 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 59
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3
Domain From Human Cd2ap (Cms) In Complex With A
Proline-Rich Peptide From Human Rin3
Length = 65
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 40 ENDWWTGTIGDRTGLFPSNYVVPYEA 65
E WW+GT+ ++ GLFPSN+V E
Sbjct: 39 EEGWWSGTLNNKLGLFPSNFVKELEV 64
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 40 ENDWWTGTIGDRTGLFPSNYV 60
E WW+GT+ ++ GLFPSN+V
Sbjct: 33 EEGWWSGTLNNKLGLFPSNFV 53
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 15 AYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQVDQ 69
A+ Y +L ++I V + E WW G + +TG+FPSN++ + D+
Sbjct: 24 AFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDE 79
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In
Complex With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
A Y ++ G+L F + ++I +T + + +W+ G + ++G FP NYV
Sbjct: 16 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYV 63
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ E +E + Y Y P ++T + +++ + N DWW + DR G P+ Y+
Sbjct: 1 MDETGKELVLVLYDYQEKSPREVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYL 58
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYVVPYEAQVD 68
+A Y Y S P DL+F + + + V ++ +WW ++ R G PSNYV A+VD
Sbjct: 7 VALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV----ARVD 60
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGT--IGDRTGLFPSNYVVPYEA 65
++A Y Y++ DL+F + E + E DWW ++G PSNYVVP ++
Sbjct: 30 FVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADS 86
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV---VPYE 64
Y ++ G+L F + ++I +T + + +W+ G I +G FP NYV VP E
Sbjct: 8 GLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPLE 62
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPY 63
Y+ + + S +L+F +V +V +KE WW T+ D G + VP+
Sbjct: 13 YVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPH 64
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 60
IA + + +T +L+F + +++ + E+D W+ + + GL PSNY+
Sbjct: 4 IAKHDFSATADDELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYI 53
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 60
IA + + +T +L+F + +++ + E+D W+ + + GL PSNY+
Sbjct: 4 IAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYI 53
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 25 DLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQVDQ 69
+L F +VI V N DWW G I D G FP+++V + Q D+
Sbjct: 26 ELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDE 71
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGDRTGL-FPSNYV 60
A + Y + +LTF + +I V K+E WW G G + L FPSNYV
Sbjct: 11 ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYV 59
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
A Y ++ G+L F + ++I +T + + +W+ G + +G FP NYV
Sbjct: 12 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYV 59
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYEAQVD 68
Y A YP+++ +++FN ++I V +K E W G+ G FP NYV + +
Sbjct: 8 YRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSEN 67
Query: 69 QQA 71
++A
Sbjct: 68 EKA 70
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYVV 61
+A Y Y S P DL+F + + + V ++ +WW ++ R G PSNYV
Sbjct: 7 VALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVA 57
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG--TIGDRTGLFPSNYVVPYEA 65
++A Y Y++ DL+F + E + E DWW + G PSNYV P ++
Sbjct: 8 FVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYVAPADS 64
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
A + + +L F +VI++ + N DW GT+ TG+FP ++V
Sbjct: 9 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 56
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ E +E + Y Y P +LT + +++ + N DWW + R G P+ Y+
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYL 58
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKE------NDWWTGTI-GDRTGLFPSNYVVP 62
+ A + Y++ +LT + + + V ++ WWTG + R G+FPSNYV P
Sbjct: 32 WTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP 89
>pdb|2VKN|A Chain A, Yeast Sho1 Sh3 Domain Complexed With A Peptide From Pbs2
Length = 70
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 25 DLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYV 60
+++F Q+E++ V+ E WW + TG+ PSNYV
Sbjct: 23 EISFEQNEILQVSDIEGRWWKARRANGETGIIPSNYV 59
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTGTIGDRTGLFPSNYV 60
A Y + + + +L + +++ + KKE WW G++ + G FP+ YV
Sbjct: 12 ALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYV 60
EY Y + + DL F + E++ + +K E WW+ D R G+ P YV
Sbjct: 126 EYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYV 178
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 18 YDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRTGLFPSNYVVPYEAQ 66
YD T L +++ VT+ N W G + R GLFP +V ++ Q
Sbjct: 251 YDKTA---LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ 297
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1
Length = 68
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 31 DEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
D + V + E WW G + +TG+FPSN++
Sbjct: 30 DIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 59
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement
Tag (Inset) Using A Sortase-Mediated Protein Ligation
Method
Length = 142
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN--DWWTGTIGDRTGLFPSNYV 60
A Y + + + +L+ + ++I + K+ WW G I R G FPSNYV
Sbjct: 10 ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYV 58
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYVVPYEAQVD 68
+A Y Y++ DL+F + + + V ++ +WW ++ R G PSNYV A+VD
Sbjct: 12 VALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV----ARVD 65
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYVVPYEAQVD 68
+A Y Y++ DL+F + + + V ++ +WW ++ R G PSNYV A+VD
Sbjct: 4 VALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV----ARVD 57
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Query: 25 DLTFNQDEVIYVTKKEN-DWWTGTIG---DRTGLFPSNYV 60
+LTF + EVI VT +E+ +WW G I +R G+FP ++V
Sbjct: 17 ELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 56
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+E +A Y Y ++T + +++ + N DWW + DR G P+ YV
Sbjct: 1 KELVLALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 53
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 33.9 bits (76), Expect = 0.025, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYV 60
EY Y + + DL F + E++ + +K E WW+ D R G+ P YV
Sbjct: 126 EYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYV 178
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 18 YDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRTGLFPSNYVVPYEAQ 66
YD T L +++ VT+ N W G + R GLFP +V ++ Q
Sbjct: 251 YDKTA---LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ 297
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase
C, Gamma 2
Length = 69
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGDR-TGLFPSNYV 60
A Y Y + +LTF + +I+ V+K+ WW G G R FPSNYV
Sbjct: 12 ALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYV 60
>pdb|1KIK|A Chain A, Sh3 Domain Of Lymphocyte Specific Kinase (Lck)
Length = 57
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG---TIGDRTGLFPSNYVV 61
IA + Y+ + GDL F + E + + ++ +WW T G + G P N+V
Sbjct: 4 IALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTG-QEGFIPFNFVA 54
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV--TKKENDWWTG---TIGDRTGLFPSNYVVPYEAQ 66
++A Y Y + DL+F++ E + DWW T G+ TG PSNYV P ++
Sbjct: 9 FVALYDYQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGE-TGYIPSNYVAPVDSI 67
Query: 67 VDQQ 70
+Q
Sbjct: 68 QGEQ 71
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
Length = 167
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG---TIGDRTGLFPSNYVV 61
IA + Y+ + GDL F + E + + ++ +WW T G + G P N+V
Sbjct: 8 IALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTG-QEGFIPFNFVA 58
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYVV 61
+A Y Y++ DL+F + + + V ++ +WW ++ R G PSNYV
Sbjct: 13 VALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVA 63
>pdb|2IIM|A Chain A, Sh3 Domain Of Human Lck
Length = 62
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG---TIGDRTGLFPSNYVV 61
IA + Y+ + GDL F + E + + ++ +WW T G + G P N+V
Sbjct: 10 IALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTG-QEGFIPFNFVA 60
>pdb|2DLP|A Chain A, Solution Structure Of The Sh3 Domain Of Human Kiaa1783
Protein
Length = 85
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 26 LTFNQDEVIY---VTKKENDWWTGTIGDRTGLFPSNYVVPYEA 65
L+F++ ++I V E W G+ G R+GLFP++ V P A
Sbjct: 25 LSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAA 67
>pdb|1H92|A Chain A, Sh3 Domain Of Human Lck Tyrosine Kinase
Length = 63
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG---TIGDRTGLFPSNYVV 61
IA + Y+ + GDL F + E + + ++ +WW T G + G P N+V
Sbjct: 10 IALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTG-QEGFIPFNFVA 60
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYVVPYEAQVD 68
+A Y Y++ DL+F + + + V ++ +WW ++ R G PSNYV A+VD
Sbjct: 6 VALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV----ARVD 59
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Query: 25 DLTFNQDEVIYVTKKEN-DWWTGTIG---DRTGLFPSNYV 60
+LTF + EVI VT +E+ +WW G I +R G+FP ++V
Sbjct: 26 ELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 65
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG---TIGDRTGLFPSNYVV 61
L IA + Y+ + GDL F + E + + ++ +WW T G + G P N+V
Sbjct: 10 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTG-QEGFIPFNFVA 66
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
+ L Q A Y ++ G+L F + ++I +T + + +W+ G + ++G FP +YV
Sbjct: 8 MPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYV 65
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
A + + +L F +VI++ + N DW GT+ TG+FP ++V
Sbjct: 23 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 70
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG---TIGDRTGLFPSNYVV 61
L IA + Y+ + GDL F + E + + ++ +WW T G + G P N+V
Sbjct: 10 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTG-QEGFIPFNFVA 66
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 60
IA Y + +T +L+F + +++ V +E D W+ + + G P NY+
Sbjct: 13 IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYI 62
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
A + + +L F +VI++ + N DW GT+ TG+FP ++V
Sbjct: 179 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 226
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 26 LTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
L F++ ++I V +++ +WW G + G FP +YV
Sbjct: 27 LNFSKHDIITVLEQQENWWFGEVHGGRGWFPKSYV 61
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In
Rho-Gtpase-Activating Protein 4
Length = 76
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVV 61
+A + Y +L+F + +V+ + ++ +DWW G GL P Y+
Sbjct: 14 VACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYIT 63
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYVV 61
+A Y Y++ DL+F + + + V ++ +WW ++ R G PSNYV
Sbjct: 13 VALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVA 63
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGLFPSNYV 60
IA + Y + + +L ++E +++ WW +RTG PSNYV
Sbjct: 8 IAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYV 56
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 1 MKSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGLFPSNY 59
+K+L + IA + Y + + +L ++E +++ WW +RTG PSNY
Sbjct: 23 VKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNY 82
Query: 60 V 60
V
Sbjct: 83 V 83
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 60
IA + +T +L+F + +++ V +E+D W+ + + G P NY+
Sbjct: 4 IAKVDFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYI 53
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 32.0 bits (71), Expect = 0.096, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
A + + + + +L F +VI V N +WW G + D G FP+++V
Sbjct: 35 ALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 82
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 32 EVIYVTKKENDWWTGTIGDRTGLFPSNYVV 61
+VI + K + WW G+ + G FPSNYV
Sbjct: 28 KVIVMEKCSDGWWRGSYNGQVGWFPSNYVT 57
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTGTIGDRTGLFPSNYVV 61
S E+ IA + Y +L+F + + + + DWW G GL P Y+V
Sbjct: 5 SPEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEA 65
S E ++A Y +T+ L+F + E I + ++ DWW G G P+N+V +
Sbjct: 6 SGEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHSG 64
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTG---TIGDRTGLFPSNYVVP 62
A Y Y++ DL+F++ E + E DWW T G+ TG PS Y+ P
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSIYLAP 61
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 32 EVIYVTKKENDWWTGTIGDRTGLFPSNYVV 61
+VI + K + WW G+ + G FPSNYV
Sbjct: 41 KVIVMEKCSDGWWRGSYNGQVGWFPSNYVT 70
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
A + + + + +L F +VI V N +WW G + D G FP+++V
Sbjct: 72 ALWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGEGWFPASFV 119
>pdb|2I0N|A Chain A, Structure Of Dictyostelium Discoideum Myosin Vii Sh3
Domain With Adjacent Proline Rich Region
Length = 80
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYV 60
+Y A Y+ ++ L F ++++I +T K EN W+ G + + G FP ++V
Sbjct: 11 KYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHV 63
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVV 61
L++ EY A + ++ + DL F + +++ + K E WW + + G+ P YV
Sbjct: 129 LRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 188
Query: 62 PY 63
Y
Sbjct: 189 KY 190
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
Length = 86
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYVVPYEAQVD 68
+A Y Y++ DL+F + + + V ++ +WW ++ R G PSNYV A+VD
Sbjct: 29 VALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV----ARVD 82
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
+A Y + + + +L+ + +V+ + + + WW G R G FPS YV
Sbjct: 11 VARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 61
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 12 YIAAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI---GDRTGLFPSNYV 60
Y A Y Y + + +++F + D ++ V + ++ W GT+ GD TG+ P+NYV
Sbjct: 6 YRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGD-TGMLPANYV 57
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN----DWWTGTIGDRTGLFPS 57
+ A Y Y+ +L+F + +I + KEN +W G R G+FPS
Sbjct: 10 FVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPS 60
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM
NMR RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWW---TGTIGDRTGLFPSNYVVP 62
+ A Y Y++ DL+F++ E + E DWW + T G+ TG PS Y+ P
Sbjct: 10 FEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGE-TGYIPSPYLAP 63
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYV 60
+ + + A Y Y + + +++F + D +I V + W GT+ RTG+ P+NYV
Sbjct: 2 AGKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYV 57
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 16 YPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVV 61
+ Y + +L+ + + V +K +D WW G+ + G FPSNYV+
Sbjct: 7 FAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVL 53
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 25 DLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+L F +VI V N +WW G + D G FP+++V
Sbjct: 52 ELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 88
>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of
Kiaa1010 Protein [homo Sapiens]
Length = 79
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTK-----KENDWWTGTIGDRTGLFPSNYVVP 62
+ Y A Y + + P +L+ + ++ + + + +WW + + G PSNY+
Sbjct: 12 GNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRK 71
Query: 63 YEA 65
E+
Sbjct: 72 TES 74
>pdb|4DEX|A Chain A, Crystal Structure Of The Voltage Dependent Calcium
Channel Beta-2 Subunit In Complex With The Cav2.2 I-Ii
Linker
Length = 339
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 12 YIAAYPYDSTEPG-DLTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPS 57
Y AA+ D PG ++F + ++V +K NDWW G + G G PS
Sbjct: 49 YSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS 99
>pdb|1T3L|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core In Complex With
Alpha1 Interaction Domain
pdb|1T3S|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core
Length = 337
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 12 YIAAYPYDSTEPG-DLTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPS 57
Y AA+ D PG ++F + ++V +K NDWW G + G G PS
Sbjct: 47 YSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS 97
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRT-GLFPSNYVVPYEAQVD 68
+A Y Y S DL+F + + + V ++ +WW ++ R G PSNYV A+VD
Sbjct: 7 VALYDYYSPFSWDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYV----ARVD 60
>pdb|4DEY|A Chain A, Crystal Structure Of The Voltage Dependent Calcium
Channel Beta-2 Subunit In Complex With The Cav1.2 I-Ii
Linker
Length = 337
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 12 YIAAYPYDSTEPG-DLTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPS 57
Y AA+ D PG ++F + ++V +K NDWW G + G G PS
Sbjct: 47 YSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS 97
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI---GDRTGLFPSNYVVPYEA 65
++Y +A Y YD+ +L+ + +++ + W+ G + G+FP++Y+ EA
Sbjct: 11 EKYGVAFYNYDARGADELSLQIGDTVHILETYEGWYRGYTLRKKSKKGIFPASYIHLKEA 70
Query: 66 QVD 68
V+
Sbjct: 71 IVE 73
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At S19-P20
Length = 63
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 23 PGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQVDQQ 70
P ++T + +++ + N DWW + DR G P+ YV ++ ++
Sbjct: 3 PREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKE 51
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In
Complex With A Peptide Of Xirp2
Length = 64
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 12 YIAAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYV 60
Y A Y Y + + +++F + D ++ V ++ W GT+ RTG+ P+NY+
Sbjct: 9 YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYI 60
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVV 61
L++ EY A + ++ + DL F + +++ + K E WW + + G+ P YV
Sbjct: 129 LRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 188
Query: 62 PYEAQVDQQADLI 74
Y + LI
Sbjct: 189 KYRPASASVSALI 201
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 20 STEPGD-LTFNQDEVIYVTKK----ENDWWTGTIGDRTGLFPSNY 59
S E GD L+F + E + V ++ E DWW + + G P NY
Sbjct: 164 SAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
E Y+A Y + E +++ + E + V K D WW D TG FPS Y+
Sbjct: 82 EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYL 133
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
E Y+A Y + E +++ + E + V K D WW D TG FPS Y+
Sbjct: 82 EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYL 133
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVV 61
L++ EY A + ++ + DL F + +++ + K E WW + + G+ P YV
Sbjct: 9 LRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 68
Query: 62 PY 63
Y
Sbjct: 69 KY 70
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVV 61
L++ EY A + ++ + DL F + +++ + K E WW + + G+ P YV
Sbjct: 131 LRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 190
Query: 62 PY 63
Y
Sbjct: 191 KY 192
>pdb|2JS2|A Chain A, Solution Structure Of First Sh3 Domain Of Adaptor Nck
Length = 63
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGLFPSNYV 60
+A + Y + + +L ++E +++ WW ++TG PSNYV
Sbjct: 10 VAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYV 58
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 23 PGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQVDQQ 70
P ++T + +++ + N DWW + DR G P+ YV ++ ++
Sbjct: 5 PREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKE 53
>pdb|2JW4|A Chain A, Nmr Solution Structure Of The N-Terminal Sh3 Domain Of
Human Nckalpha
Length = 72
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGLFPSNYV 60
+A + Y + + +L ++E +++ WW ++TG PSNYV
Sbjct: 11 VAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYV 59
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPY 63
S EY A + ++ + DL F + +++ + K E WW + + G+ P YV Y
Sbjct: 2 SAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 59
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
+ E Y+A Y + E +++ + E + V K D WW D TG FPS Y+
Sbjct: 80 AGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYL 133
>pdb|1WXT|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Hypothetical Protein Flj21522
Length = 68
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 16 YPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGLFPSNYVVPYEA 65
Y +++ P +LT Q E + V WW R+G PSN + P
Sbjct: 14 YEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLSG 64
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
+ E Y+A Y + E +++ + E + V K D WW D TG FPS Y+
Sbjct: 79 AGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYL 132
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRT---GLFPSNYVVP 62
Y A Y Y +L +++ V +K +D W RT G FP NYV P
Sbjct: 9 YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 13 IAAYPYDSTEPGDLTFNQDEV--IYVTKKENDWWTGT--IGDRTGLFPSNYVVPYEA 65
IA Y + T DL F + +V I K+ +W+ +G R G+ P+NYV E
Sbjct: 15 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVG-REGIIPANYVQKREG 70
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 28.5 bits (62), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRT---GLFPSNYVVP 62
Y A Y Y +L +++ V +K +D W RT G FP NYV P
Sbjct: 9 YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62
>pdb|1T0J|A Chain A, Crystal Structure Of A Complex Between Voltage-Gated
Calcium Channel Beta2a Subunit And A Peptide Of The
Alpha1c Subunit
Length = 132
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 12 YIAAYPYDSTEPG-DLTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPS 57
Y AA D PG ++F + ++V +K NDWW G + G G PS
Sbjct: 57 YSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS 107
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 28.5 bits (62), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 41 NDWWTGTIGDRTGLFPSNYVV 61
+ WW G+ + G FPSNYV+
Sbjct: 34 DGWWRGSYNGQIGWFPSNYVL 54
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Sorbin And Sh3 Domain-Containing Protein 1
Length = 68
Score = 28.5 bits (62), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 25 DLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
+L + +++Y+ K+ + +W+ G R G+FP Y+
Sbjct: 23 ELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYI 59
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 16 YPYDSTEPGDLTFNQDEVI---YVTKKENDWWTGTIGDRTGLFPSNYV 60
Y YD+ +L+ DEVI V ++DW G G++ G P Y+
Sbjct: 24 YDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYL 71
>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer
pdb|2BZY|A Chain A, Dimeric Of Crkl-Sh3c Domain
pdb|2BZY|B Chain B, Dimeric Of Crkl-Sh3c Domain
Length = 67
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 18 YDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRTGLFPSNYVVPYEAQ 66
YD T L +++ VT+ N W G + R GLFP +V ++ Q
Sbjct: 15 YDKTA---LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ 61
>pdb|1T0H|A Chain A, Crystal Structure Of The Rattus Norvegicus Voltage Gated
Calcium Channel Beta Subunit Isoform 2a
Length = 132
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 12 YIAAYPYDSTEPGD-LTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPS 57
Y AA D PG ++F + ++V +K NDWW G + G G PS
Sbjct: 57 YSAAQEDDVPVPGXAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS 107
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 39 KENDWWTGTIGDRTGLFPSNYV 60
+E W GT+ +TGL P NYV
Sbjct: 42 QEPGWLEGTLNGKTGLIPENYV 63
>pdb|2EKH|A Chain A, Solution Structures Of The Sh3 Domain Of Human Kiaa0418
Length = 80
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 12 YIAAYPYDSTEPGDLTFNQD-EVIYVTKKENDWWTGTIGDRTGLFPSNYVV 61
Y+ Y + +++F EV + K+E+ WW G+ G PS+Y+V
Sbjct: 11 YMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLV 61
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRT---GLFPSNYVVP 62
Y A Y Y +L + + + V ++ +D W + RT G FP NYV P
Sbjct: 10 YRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
Length = 57
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPY 63
EY A + ++ + DL F + +++ + K E WW + + G+ P YV Y
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQ 66
E Y+ Y E +L+ EV+ V +K E+ WW + + G P+ Y+ EAQ
Sbjct: 9 EQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYL---EAQ 63
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 25 DLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
++T + +++ + N DWW + DR G P+ YV
Sbjct: 15 EVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 51
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKE----NDWWTGTIGDRTGLFPSNYV 60
A Y + P +L+F + +++ V +++ + WW ++ R G+ P N +
Sbjct: 8 ALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRL 58
>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|B Chain B, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|C Chain C, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|D Chain D, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
Length = 71
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 13 IAAYPYDSTEPGDLTFNQDEV---IYVTKKENDWWTGTIGDRTGLFPSNYVVPYEA 65
IA Y + T DL F + +V + VTK N + R G+ P+NYV E
Sbjct: 15 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG 70
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From
Oncogene Protein C-Crk
Length = 58
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPY 63
EY A + ++ + DL F + +++ + K E WW + + G+ P YV Y
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57
>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like
Protein
Length = 88
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 18 YDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRTGLFPSNYVVPYEAQ 66
YD T L +++ VT+ N W G + R GLFP +V ++ Q
Sbjct: 30 YDKTA---LALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ 76
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPY 63
EY A + ++ + DL F + +++ + K E WW + + G+ P YV Y
Sbjct: 2 GAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 59
>pdb|2DMO|A Chain A, Refined Solution Structure Of The 1st Sh3 Domain From
Human Neutrophil Cytosol Factor 2 (Ncf-2)
Length = 68
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 31 DEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYEA 65
+++V KK ND W T + GL P NY+ P
Sbjct: 29 GNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVSG 64
>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src
Kinase Complexed With A Peptide From The Tyrosine
Phosphatase Pep
Length = 83
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 13 IAAYPYDSTEPGDLTFNQDEV---IYVTKKENDWWTGTIGDRTGLFPSNYVVPYEA 65
IA Y + T DL F + +V + VTK N + R G+ P+NYV E
Sbjct: 15 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG 70
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTGTIGDRTGLFPSNYVV 61
IA + Y +L+F + + + + +DWW G GL P Y+V
Sbjct: 13 IAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIV 62
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVT-KKENDWWTGTIGD-RTGLFPSNYV 60
EY A + ++ + DL F + +++ + K E WW D + G+ P YV
Sbjct: 2 EYVRALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYV 54
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related
Kinase
Length = 77
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WW---------TGTIGDRTGLFPS 57
S +Y++A + Y + DL+F + + V ++ WW TG G PS
Sbjct: 6 SGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPS 65
Query: 58 NYVV 61
NYV
Sbjct: 66 NYVA 69
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Proline- Serine-Threonine Phosphatase-Interacting
Protein 1
Length = 69
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVT-KKENDWWTGTIGDRTGLFPSNYV 60
Y A Y Y + P +L + +++ V + E+ WWT + G P +Y+
Sbjct: 11 YRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYL 60
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 30 QDEVIYVTKKENDWWTG 46
Q+E +Y +N+WWTG
Sbjct: 132 QEEHLYTQIAQNNWWTG 148
>pdb|1VYV|A Chain A, Beta4 Subunit Of Ca2+ Channel
pdb|1VYV|B Chain B, Beta4 Subunit Of Ca2+ Channel
Length = 359
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 12 YIAAYPYDSTEPGD-LTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPS 57
Y A D P ++F+ + +++ +K NDWW G + G G PS
Sbjct: 54 YCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 104
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And
Tbc1 Domain Containing 3
Length = 78
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 25 DLTFNQDEVI-YVTKKENDWWTGTIGDRTGLFPSNYV 60
+L F ++++I +++K+ W G + G FP+ +V
Sbjct: 23 ELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFV 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,845,975
Number of Sequences: 62578
Number of extensions: 106786
Number of successful extensions: 520
Number of sequences better than 100.0: 226
Number of HSP's better than 100.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 229
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)