RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7083
(95 letters)
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 94.3 bits (235), Expect = 2e-27
Identities = 36/58 (62%), Positives = 45/58 (77%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEA 65
E YIA YPY S EPGDLTF + E I VT+K+ +WWTG+IGDR+G+FPSNYV P ++
Sbjct: 7 GGEEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIFPSNYVKPKDS 64
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 80.3 bits (199), Expect = 4e-22
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
EY A Y +D + GDL + + + +K + +W+ G+ RTG+FP+NYV P
Sbjct: 3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKP 56
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein;
2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB:
2sem_A 3sem_A 1k76_A 1kfz_A
Length = 58
Score = 79.9 bits (198), Expect = 5e-22
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPY 63
++ A + ++ E G+L F + +VI + K++ +WW G + +R G+FPSNYV PY
Sbjct: 2 TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY 57
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 79.2 bits (196), Expect = 1e-21
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVP 62
++EY +PY T +LTF + E+I++ K E WW G + + G+FP N+ V
Sbjct: 5 AKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQ 62
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 78.9 bits (195), Expect = 2e-21
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYE 64
+E +A Y Y P ++T + +++ + N DWW + DR G P+ YV +
Sbjct: 4 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 61
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 78.8 bits (195), Expect = 2e-21
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEA 65
S Y+A Y + E DL ++I + + N DWW G I DR G FP+N+V
Sbjct: 6 SGNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSG 64
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 79.0 bits (195), Expect = 3e-21
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYV 60
A Y ++ +PGDL F + I V K + DWW G + +TG+FP+NYV
Sbjct: 18 IEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYV 71
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 78.0 bits (193), Expect = 3e-21
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 5 QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
Q A + Y++T+P DL F + ++I V K N +W G + G+FP +V
Sbjct: 1 QLKKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVED 59
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 85
Score = 79.0 bits (195), Expect = 3e-21
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYEA 65
Y IA Y + L+F++ ++I + E W G+ G R+GLFP++ V P A
Sbjct: 8 SGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAA 67
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 78.1 bits (193), Expect = 4e-21
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 6 ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPSNYVVPY 63
E + +A YPYD P DL+F + E + V ++ +WW + + G PSNYV
Sbjct: 4 EEQGDIVVALYPYDGIHPDDLSFKKGEKMKVLEEHGEWWKAKSLLTKKEGFIPSNYVAKL 63
Query: 64 E 64
Sbjct: 64 N 64
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 77.6 bits (192), Expect = 4e-21
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
S +A Y + E GDL F + +VI + KK +NDWWTG + R G+FP+NYV
Sbjct: 2 SSPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 57
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 77.7 bits (192), Expect = 5e-21
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYE 64
S E ++A Y +T+ L+F + E I + ++ DWW G G P+N+V +
Sbjct: 6 SGEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHS 63
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein;
1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A
1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A
1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A
...
Length = 62
Score = 77.7 bits (192), Expect = 5e-21
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
+ E +E + Y Y P +LT + +++ + N DWW + R G P+ Y+
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKK 60
Query: 63 YE 64
+
Sbjct: 61 LD 62
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 77.6 bits (192), Expect = 5e-21
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
Y A + +D E G+L F + + I+V + +WW G +TG+FP NYV
Sbjct: 3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTA 56
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 77.8 bits (192), Expect = 6e-21
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYE 64
S +A Y + + + +L+ + +V+ + + + WW G R G FPS YV
Sbjct: 6 SGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEG 65
Query: 65 AQ 66
Q
Sbjct: 66 IQ 67
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 77.8 bits (192), Expect = 6e-21
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEA 65
+E +A Y Y P ++T + +++ + N DWW + DR G P+ YV +
Sbjct: 2 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDP 59
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42
guanine nucleotide exchange factor (GEF) 9, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 77.8 bits (192), Expect = 6e-21
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQ 66
S A + + + +L F +VI V N DWW G I D G FP+++V + Q
Sbjct: 9 SIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQ 68
Query: 67 VDQQAD 72
D+ +
Sbjct: 69 EDEVEE 74
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 77.3 bits (191), Expect = 7e-21
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
S +Y +PY++ +LT + +++ + K + WW G + R G+FP N+V
Sbjct: 6 SGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 61
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 77.5 bits (191), Expect = 9e-21
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPSNYVVPYE 64
+A Y Y++ DL+F + + + V ++ +WW + G PSNYV +
Sbjct: 24 EDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 82
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling
protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 77.3 bits (191), Expect = 9e-21
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
+ +Y +PY++ +LT + +++ + K + WW G + R G+FP N+V
Sbjct: 1 ASDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 56
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 76.9 bits (190), Expect = 1e-20
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEA 65
S + + A Y ++ P +L F + ++IY+T + +WW GT RTGL PSNYV
Sbjct: 6 SGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQSG 64
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 71
Score = 76.6 bits (189), Expect = 1e-20
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE 64
+E Y+ PY S ++ F + + V +K WW + G P++Y+ +
Sbjct: 7 GEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAK 64
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 77.1 bits (190), Expect = 2e-20
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 5 QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPY 63
E +E +A Y Y P ++T + +++ + N DWW + DR G P+ YV
Sbjct: 13 DETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 72
Query: 64 EA 65
A
Sbjct: 73 AA 74
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 76.6 bits (189), Expect = 2e-20
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 2 KSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ ++ A + + +L F +VI++ + N DW GT+ TG+FP ++V
Sbjct: 11 HHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 70
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 75.7 bits (187), Expect = 2e-20
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 6 ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
L A Y YD+ + +L+FN +++I + K+ + WWTG + + GLFP+NYV
Sbjct: 2 PLGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 75.7 bits (187), Expect = 2e-20
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
S E+ IA + Y +L+F + + + + DWW G GL P Y+
Sbjct: 5 SPEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYI 58
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 76.2 bits (188), Expect = 2e-20
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 60
A + + + L F++ ++I V +++ +WW G + G FP +YV
Sbjct: 9 ENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQENWWFGEVHGGRGWFPKSYV 61
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 76.2 bits (188), Expect = 3e-20
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
E +A Y Y + +L+F + +IYV KK ++ W+ G + TGLFP NYV
Sbjct: 16 YLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 69
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 75.6 bits (187), Expect = 3e-20
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ A + + +L F +VI++ + N DW GT+ TG+FP ++V
Sbjct: 2 IKHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 56
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 76.7 bits (189), Expect = 3e-20
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
IA Y Y + +L+F++ ++I V K + DWW G I TGLFPSNYV
Sbjct: 33 PVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 86
Score = 28.1 bits (63), Expect = 0.20
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 51 RTGLFPSNYVVPYEAQVDQQADLIRCTCQV 80
+ G FP+++V ++ CQV
Sbjct: 8 QKGWFPASHVKLLGPSSERATPAFHPVCQV 37
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 75.3 bits (186), Expect = 4e-20
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ + A Y ++ P +L F + ++IY+T + +WW GT RTGL PSNYV
Sbjct: 3 VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 76.0 bits (187), Expect = 5e-20
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
Y A YP+++ +++FN ++I V +K E W G+ G FP NYV
Sbjct: 4 GSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYV 59
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 74.9 bits (185), Expect = 7e-20
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
S A Y PGDL FN+ +VI + ++ + +W+ G I +G+FP++ V
Sbjct: 6 SGPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSV 59
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 74.8 bits (184), Expect = 9e-20
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQ 66
Y+ Y + +++F + V +K E+ WW G+ G PS+Y+V E +
Sbjct: 7 GATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENE 66
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 74.1 bits (183), Expect = 1e-19
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 62
+ A Y +++ E +L F EV+ V N WWTG + ++ GLFP+NYV P
Sbjct: 2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 74.6 bits (184), Expect = 1e-19
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA 65
E Y+ Y E +L+ EV+ V +K E+ WW + + G P+ Y+ +
Sbjct: 9 EQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNS 65
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 74.2 bits (183), Expect = 1e-19
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA 65
+ + Y +L ++I + ++ E WW+GT+ ++ GLFPSN+V E
Sbjct: 6 KKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEV 64
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 74.7 bits (184), Expect = 1e-19
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQ 66
+A + Y +L+F + +V+ + ++ +DWW G GL P Y+
Sbjct: 9 GVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGT 68
Query: 67 VDQQA 71
Q
Sbjct: 69 EKQVV 73
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 74.3 bits (183), Expect = 1e-19
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 3 SLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVV 61
S IA + Y +L+F + + + ++ + DWW G GL P Y+V
Sbjct: 3 SGSSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIV 62
Query: 62 PYE 64
+
Sbjct: 63 VQD 65
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 74.8 bits (184), Expect = 1e-19
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 5 QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPY 63
A Y +++ E +LTF E+I V + +WW G GLFPSN+V
Sbjct: 13 NNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTN 72
Query: 64 EAQVDQQAD 72
+ A
Sbjct: 73 LNIETEAAA 81
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics,
SH3 domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 74.7 bits (184), Expect = 1e-19
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
Q A + + T +L+ + ++IYVT+ E WW GT+ RTG FPSNYV
Sbjct: 9 HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 74.2 bits (183), Expect = 1e-19
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 2 KSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ + L Q A Y ++ G+L F + ++I +T + + +W+ G + ++G FP +YV
Sbjct: 6 EFMPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYV 65
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif)
2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 73.8 bits (182), Expect = 1e-19
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
A Y +++ E +LTF E+I V + +WW G TGLFPSN+V
Sbjct: 4 MARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 73.8 bits (182), Expect = 2e-19
Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
S A + + + +L + +++Y+ K+ + +W+ G R G+FP Y+
Sbjct: 6 SGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYI 59
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins,
CIN85, PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 73.8 bits (182), Expect = 2e-19
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
SQ A + + T +L+F++ +VI+VT+ E WW GT RTG FPSNYV
Sbjct: 5 SQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels,
signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP:
b.34.2.1 PDB: 1h92_A 1kik_A
Length = 62
Score = 73.5 bits (181), Expect = 2e-19
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGT--IGDRTGLFPSNYVVP 62
L IA + Y+ + GDL F + E + + ++ +WW + G P N+V
Sbjct: 4 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain
protein 2A, endophilin 1, EEN-B1, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 73.8 bits (182), Expect = 2e-19
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
S A Y ++ G+L F + ++I +T + + +W+ G + +G FP NYV
Sbjct: 6 SGPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYV 59
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 73.9 bits (182), Expect = 2e-19
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
S++Y +PY++ +LT + +++ + K + WW G + R G+FP N+V
Sbjct: 8 SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 63
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 68
Score = 73.8 bits (182), Expect = 2e-19
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYEA 65
S A+ Y +L ++I V + + WW G + +TG+FPSN++
Sbjct: 6 SGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSG 64
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 73.4 bits (181), Expect = 2e-19
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVP 62
S E + + + +L +++V KK ND W T + GL P NY+ P
Sbjct: 6 SGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEP 61
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 74.0 bits (182), Expect = 3e-19
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYEAQ 66
+ A+ Y +L ++I V + + WW G + +TG+FPSN++ +
Sbjct: 17 RRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGE 76
Query: 67 VDQQA 71
D+
Sbjct: 77 SDELG 81
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 73.4 bits (181), Expect = 3e-19
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYVVPYEA 65
S EY A + ++ + DL F + +++ + K WW + + G+ P YV Y
Sbjct: 2 SAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH 61
Query: 66 QVDQ 69
Sbjct: 62 HHHH 65
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 73.6 bits (181), Expect = 3e-19
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-----ENDWWTGTIGDRTGLFPSNYVVP 62
+ Y A Y + + P +L+ + ++ + + + +WW + + G PSNY+
Sbjct: 12 GNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRK 71
Query: 63 YEA 65
E+
Sbjct: 72 TES 74
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural
genomics, northeast structural genomics consortiu
PSI-2, protein structure initiative; NMR {Homo sapiens}
Length = 72
Score = 73.1 bits (180), Expect = 4e-19
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
A Y +++ E +LTF E+I V + +WW G GLFPSN+V
Sbjct: 16 EARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein,
membrane, nuclear protein, phosphorylation,
polymorphism, transport, structural genomics; NMR {Homo
sapiens}
Length = 70
Score = 73.0 bits (180), Expect = 4e-19
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI--GDRTGLFPSNYV 60
S IA + ++ +++F + E I + ++ + +W+ G I R G+FP YV
Sbjct: 6 SGGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 73.6 bits (181), Expect = 4e-19
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 5 QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYV 60
+Y A Y+ ++ L F ++++I +T K EN W+ G + + G FP ++V
Sbjct: 6 SPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHV 63
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 73.0 bits (180), Expect = 4e-19
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV---VP 62
+ Q Y ++ G+L F + ++I +T + + +W+ G I +G FP NYV VP
Sbjct: 1 MDQPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVP 60
Query: 63 YEAQVDQQ 70
E
Sbjct: 61 LEHHHHHH 68
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 73.1 bits (180), Expect = 4e-19
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----WWTGTIGDRTGLFPSNYV 60
+ A Y Y+ +L+F + +I + KEN +W G R G+FPS V
Sbjct: 7 GVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 63
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 73.7 bits (181), Expect = 4e-19
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
+ Y + +L+ + + V +K +D WW G+ + G FPSNYV
Sbjct: 16 LNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 69
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 73.1 bits (180), Expect = 5e-19
Identities = 11/65 (16%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQ 66
S A ++ + +L F ++++I + +++ W G + G FP+ +V + +
Sbjct: 6 SGRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDER 65
Query: 67 VDQQA 71
+ +
Sbjct: 66 SKEYS 70
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 72.6 bits (179), Expect = 5e-19
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP 62
A + + T +L+F++ +VI+VT+ E WW GT RTG FPSNYV
Sbjct: 3 LGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 58
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 73.2 bits (180), Expect = 5e-19
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPSNYVVPYE 64
+ +A Y Y S P DL+F + + + V ++ +WW + G PSNYV +
Sbjct: 1 MEDIIVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 60
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 72.6 bits (179), Expect = 6e-19
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYEAQVD 68
+ Y +L ++I + ++ + WW+GT+ ++ GLFPSN+V E +
Sbjct: 2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELEHH 61
Query: 69 QQ 70
Sbjct: 62 HH 63
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 72.7 bits (179), Expect = 6e-19
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA 65
+ Y A Y Y + P +L + +++ V + E+ WWT + G P +Y+
Sbjct: 9 QEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSG 65
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 72.8 bits (179), Expect = 6e-19
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
S A Y + + + +L + +++ + +K E WW G++ + G FP+ YV
Sbjct: 6 SGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 72.9 bits (179), Expect = 7e-19
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Query: 5 QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPSNYVVP 62
+ L ++ Y S + F + E + V E WW R P V
Sbjct: 13 EGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLSTGRESYIPGICVAR 72
Query: 63 YE 64
Sbjct: 73 VS 74
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 72.3 bits (178), Expect = 7e-19
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 60
+ IA Y + +T +L+F + +++ V +E D W+ + + G P NY+
Sbjct: 7 VGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYI 62
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 72.3 bits (178), Expect = 8e-19
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 3 SLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYV 60
S + + E YIA + + + GDLTF + E++ V +K + WW GL P Y+
Sbjct: 4 SHKWSTGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYL 63
Query: 61 VPYE 64
PY
Sbjct: 64 EPYS 67
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 71.9 bits (177), Expect = 1e-18
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV--VPYEAQ 66
+ + + + P +LT + +++Y+ K+ + +W G R G+FP+NYV +P E
Sbjct: 2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLEHH 61
Query: 67 VDQQ 70
Sbjct: 62 HHHH 65
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 71.5 bits (176), Expect = 1e-18
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT--IGDRTGLFPSNYVVP 62
S ++A + Y + P +L + E I V K D W G + RTG+FPS+YV+P
Sbjct: 6 SGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIP 63
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3,
SH3-containing adapter molecule 1, SCAM-1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 90
Score = 72.1 bits (177), Expect = 2e-18
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 3 SLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD--RTGLFPSNY 59
+ Q L +A Y + +L+F + E I + +K N +W+ G I R G+FP++Y
Sbjct: 11 TYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASY 70
Query: 60 VVPYEAQVDQQAD 72
V + D
Sbjct: 71 VQVSREPRLRLCD 83
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 81
Score = 72.0 bits (177), Expect = 2e-18
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 60
+ Y YD+ +L+ DEVI V ++DW G G++ G P Y+
Sbjct: 16 NNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYL 71
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 71.0 bits (175), Expect = 2e-18
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPY 63
EY A + ++ + DL F + +++ + K E WW + + G+ P YV Y
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 71.1 bits (175), Expect = 2e-18
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI--GDRTGLFPSNYV 60
IA + ++ +++F + E I + ++ + +W+ G I R G+FP YV
Sbjct: 5 FTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 60
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C*
2o88_A 1bbz_A 1awo_A
Length = 63
Score = 71.1 bits (175), Expect = 2e-18
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYEA 65
++A Y + ++ L+ + E + V ++ W + G PS Y+ P +
Sbjct: 6 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVNS 63
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 70.8 bits (174), Expect = 3e-18
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTIGDRTGLFPSNYV 60
A Y + P +L+F + +++ V ++ + WW ++ R G+ P N +
Sbjct: 7 KALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRL 58
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 70.3 bits (173), Expect = 4e-18
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
A Y YD+ +LTF + + I V +K WW G + + G P+NYV
Sbjct: 3 GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 55
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 69.9 bits (172), Expect = 6e-18
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYEAQVD 68
YI Y YD+ +LT E+I KK + W G + R G+FP N+V + + +
Sbjct: 3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRETE 62
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN
structural genomics consortium, SGC; 2.00A {Homo
sapiens}
Length = 89
Score = 70.6 bits (173), Expect = 6e-18
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK------ENDWWTGTIGD-RTGLFPSNYV 60
+ + A + Y++ +LT + + + V + + WWTG + R G+FPSNYV
Sbjct: 28 AGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYV 87
Query: 61 VP 62
P
Sbjct: 88 AP 89
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 70.0 bits (172), Expect = 6e-18
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 3 SLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYV 60
S+ + +A Y Y DL + + ++ ++ N WW + + G PSNYV
Sbjct: 2 SMSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61
Query: 61 VPYE 64
E
Sbjct: 62 TEAE 65
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 72.0 bits (176), Expect = 6e-18
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYEA 65
+ A Y + + + +L+ + ++I + K+ WW G I R G FPSNYV +
Sbjct: 4 TFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYS 63
Query: 66 Q 66
+
Sbjct: 64 E 64
Score = 32.0 bits (72), Expect = 0.012
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQ-DEVIYVTKKEND 42
E Y D+ G+ T++ + VT+ +
Sbjct: 103 EKVFKQYANDNGVDGEWTYDDATKTFTVTEHSLE 136
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 70.0 bits (172), Expect = 7e-18
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGT--IGDRTGLFPSNYVVPYE 64
++A Y Y++ DL+F++ E + DWW TG PSNYV P +
Sbjct: 14 GVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 73
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 69.6 bits (171), Expect = 7e-18
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD-----RTGLFPSNYV 60
+A +PY S DL F +D+ I VT E+ W+ G D G+FP ++V
Sbjct: 11 VAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 64
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 69.6 bits (171), Expect = 8e-18
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
IA Y Y + +++F+ D++I + + WW G R GLFP+NYV
Sbjct: 8 LGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 69.5 bits (171), Expect = 8e-18
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
I + Y + +LT + E+I +KE+ WW G I R GLFP N+V
Sbjct: 5 IVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 69.2 bits (170), Expect = 1e-17
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDR-TGLFPSNYVVPYEA 65
S A Y Y + +LTF + +I+ KE WW G G R FPSNYV
Sbjct: 6 SGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISG 65
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 69.8 bits (171), Expect = 1e-17
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDR-----TGLFPSNYV 60
S E Y ++ L+ ++I + KK WW G + R G FP+++V
Sbjct: 6 SGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHV 64
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 69.3 bits (170), Expect = 2e-17
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+A Y Y + +++F+ D++I + + WW G R GLFP+NYV
Sbjct: 20 AVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 69
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 69.0 bits (169), Expect = 2e-17
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQVDQQA 71
PY + ++T + +++ + N DWW + DR G P+ YV ++ ++
Sbjct: 4 PPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKEL 62
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 68.8 bits (169), Expect = 2e-17
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVVP 62
S Y A Y Y +L + + + V ++ +D W+ G + G FP NYV P
Sbjct: 6 SGTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 68.9 bits (169), Expect = 2e-17
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI---GDRTGLFPSNYVVPYE 64
Y + +LTF + EVI VT +E+ +WW G I +R G+FP ++V
Sbjct: 14 KTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILS 69
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 68.6 bits (168), Expect = 2e-17
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW------TGTIGDRTGLFPSNYVV 61
Y+ + + S +L+F +V +V +KE WW G P NY+
Sbjct: 9 LGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLA 68
Query: 62 PYE 64
E
Sbjct: 69 ERE 71
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A
2kr3_A
Length = 65
Score = 68.5 bits (168), Expect = 2e-17
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWW--------TGTIGDRTGLFPSNY 59
+E +A Y Y P ++T + +++ + N DWW G +R G P+ Y
Sbjct: 1 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAY 60
Query: 60 VVPYE 64
V +
Sbjct: 61 VKKLD 65
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil,
cytoplasm, SH3 domain, signaling protein; NMR {Homo
sapiens} PDB: 2rol_A
Length = 68
Score = 68.1 bits (167), Expect = 3e-17
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 3 SLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYVV 61
L + ++ + Y + + +L+ Q +V+ V WW + G P N +
Sbjct: 2 PLGSGALKWVLCNYDFQARNSSELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYVPYNILT 61
Query: 62 PYEA 65
PY A
Sbjct: 62 PYPA 65
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like
protein; SH3, EPS8, EPS8L2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 68.0 bits (167), Expect = 4e-17
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGLFPSNYVVPY 63
S +Y Y + + +L+ +DEV+ V + WW + + G P N +
Sbjct: 6 SGKYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEA 62
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 72
Score = 67.7 bits (166), Expect = 5e-17
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 60
A Y + +L+F V + W GT+ +TGL P NYV
Sbjct: 9 PFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYV 63
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 67.7 bits (166), Expect = 5e-17
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTIGDRTGLFPSNYV 60
S A Y +L F++ +++ + ++ WW + R GL P+N +
Sbjct: 6 SGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRL 62
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C
4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A
1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C
1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 68.2 bits (167), Expect = 5e-17
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTG--TIGDRTGLFPSNYVVPYE 64
++A Y Y++T DL+F++ E + + DWW TG PSNYV P +
Sbjct: 5 GVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 67.4 bits (165), Expect = 7e-17
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVP 62
+ +A Y Y + +LT ++ ++I V K DWW G+IG + G FP+N+V
Sbjct: 5 TAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVAS 61
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma
1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus}
PDB: 1ywp_A 1ywo_A
Length = 61
Score = 67.2 bits (165), Expect = 7e-17
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGL-FPSNYV 60
+ A + Y + +LTF + +I +K++ WW G G + L FPSNYV
Sbjct: 2 FKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 56
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 67.3 bits (165), Expect = 8e-17
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGL-FPSNYVVPYEA 65
+ A + Y + +LTF + +I +K+ WW G G + L FPSNYV
Sbjct: 5 FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN 64
Query: 66 QVDQQAD 72
D
Sbjct: 65 PEGIHRD 71
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 67.3 bits (165), Expect = 8e-17
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYVVPYE 64
S IA Y + T DL F + +V+ + D W+ R G+ P+NYV E
Sbjct: 10 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKRE 69
Query: 65 A 65
Sbjct: 70 G 70
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR
{Homo sapiens}
Length = 88
Score = 67.5 bits (165), Expect = 9e-17
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
I + + L +++ VT+ N W G + R GLFP +V
Sbjct: 22 IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHV 70
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 67.5 bits (165), Expect = 1e-16
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGD-RTGLFPSNYVVPYEA 65
YP+ S +L F + E + V +K + +WW + GL P NYVV
Sbjct: 18 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD 77
Query: 66 QVDQQA 71
Sbjct: 78 GPALHP 83
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 67.0 bits (164), Expect = 1e-16
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 3 SLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
S + + + L + ++I + K W G + ++ G F YV
Sbjct: 5 SSGFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYV 63
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 67.1 bits (164), Expect = 1e-16
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTG---------TIGDRTGLFPS 57
S +Y++A + Y + DL+F + + V + WW G PS
Sbjct: 6 SGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPS 65
Query: 58 NYVVPYE 64
NYV
Sbjct: 66 NYVAEDS 72
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 68.2 bits (166), Expect = 1e-16
Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI---GDRTGLFPSNYV 60
+ + +A Y + + L+ +V+ + + DW+ G + G+FP +++
Sbjct: 59 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCGDWYRGYLIKHKMLQGIFPKSFI 113
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 66.0 bits (162), Expect = 2e-16
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 60
A Y Y++ +++ + ++I V + ++ W G GLFP++Y
Sbjct: 5 AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYC 53
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3
domain, phosphorylation; NMR {Mus musculus} SCOP:
b.34.2.1
Length = 67
Score = 66.1 bits (162), Expect = 2e-16
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYVVPYE 64
E +A Y + +TE DL + + + +K + WW G PSNYV +
Sbjct: 2 SEIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 66.2 bits (162), Expect = 2e-16
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 22 EPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEA 65
P ++T + +++ + N DWW + DR G P+ YV ++
Sbjct: 2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDS 46
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 66.4 bits (162), Expect = 2e-16
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 22 EPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQVDQQA 71
P ++T + +++ + N DWW + DR G P+ YV ++ ++
Sbjct: 4 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKEL 54
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 66.2 bits (162), Expect = 2e-16
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGD-RTGLFPSNYVVPYE 64
YP+ S +L F + E + V +K + +WW + GL P NYVV
Sbjct: 7 HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS 65
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3
domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo
sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A
1wlp_B
Length = 193
Score = 68.9 bits (168), Expect = 3e-16
Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQVD 68
+ Y A Y+ T ++ + +V+ V +K E+ WW + + G P++++ P ++ +
Sbjct: 12 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDE 71
Query: 69 QQADLIRCTCQVY 81
+ + Y
Sbjct: 72 TEDPEPNYAGEPY 84
Score = 67.7 bits (165), Expect = 7e-16
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQVD 68
E Y+A Y + E +++ + E + V K + WW D TG FPS Y+ V
Sbjct: 82 EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVS 141
Query: 69 QQA 71
Q
Sbjct: 142 QAQ 144
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 65.9 bits (161), Expect = 4e-16
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 2 KSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNY 59
+ L E + IA Y Y + +P +L ++E + WW + G PS+Y
Sbjct: 12 RPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSY 71
Query: 60 VVPYEAQVDQQAD 72
+V + +
Sbjct: 72 LVEKSPNNLETYE 84
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 64.9 bits (159), Expect = 4e-16
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD--RTGLFPSNYV 60
+ A Y YD+ E +LTF +++ I + + DWW G + GLFPSNYV
Sbjct: 2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 64.9 bits (159), Expect = 5e-16
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGD-RTGLFPSNYV 60
A Y YD E +L+F + + + E W G + + GL+P+NYV
Sbjct: 7 RALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYV 57
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic
protein NCK2; T-cell receptor, SH3 domain, immunology,
SH2 domain; NMR {Homo sapiens}
Length = 86
Score = 65.6 bits (160), Expect = 6e-16
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 2 KSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRTGLFPSNYV 60
K+L + IA + Y + + +L ++E +++ WW +RTG PSNYV
Sbjct: 24 KNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYV 83
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein
3, protein-protein interaction, structural genomics;
NMR {Homo sapiens}
Length = 68
Score = 65.0 bits (159), Expect = 6e-16
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGLFPSNYVVPY 63
S Y +++ P +LT Q E + V WW R+G PSN + P
Sbjct: 6 SGLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPL 62
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane;
2.05A {Saccharomyces cerevisiae}
Length = 70
Score = 64.7 bits (158), Expect = 8e-16
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 13 IAAYPYDS--TEPGDLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYVVPYEA 65
A YPYD+ + +++F Q+E++ V+ E WW + TG+ PSNYV +
Sbjct: 9 KALYPYDADDDDAYEISFEQNEILQVSDIEGRWWKARRANGETGIIPSNYVQLIDG 64
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 64.2 bits (157), Expect = 8e-16
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 12 YIAAYPYD-STEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVVPY 63
+ AAY + S P +L + +VIY+T++E W G + G + G P+ Y+ P+
Sbjct: 3 FEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKPH 58
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 64.7 bits (158), Expect = 1e-15
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGT--IGDRTGLFPSNYVVPYE 64
+ A Y Y++ DL+F++ E + DWW TG PS Y+ P +
Sbjct: 5 STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVD 63
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 64.2 bits (157), Expect = 1e-15
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 7 LSQE-YYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRTGLFPSNYVVPYE 64
+++E IA + Y + + +L ++E +++ WW +RTG PSNYV
Sbjct: 1 MTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKL 60
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 64.3 bits (157), Expect = 1e-15
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 8 SQEYYIAAYPYDSTEP-------GDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSN 58
S +A Y YD E +LTF ++I V + E+ ++ G + + GL PSN
Sbjct: 6 SGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSN 65
Query: 59 YV 60
++
Sbjct: 66 FL 67
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold
protein 1, islet-brain-1, IB-1, mitogen-activated P
kinase 8-interacting protein 1; 3.00A {Rattus
norvegicus}
Length = 71
Score = 63.8 bits (156), Expect = 1e-15
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 6 ELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVVP 62
E ++ + A + + +L D+ + V + D W+ G+FP+ Y +
Sbjct: 3 EEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 62
Query: 63 YEAQVDQQA 71
+ + A
Sbjct: 63 VTKEPEHMA 71
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2
domain, signaling protein; NMR {Homo sapiens}
Length = 72
Score = 64.2 bits (157), Expect = 1e-15
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRTGLFPSNYVVPYE 64
+ +A + Y + + +L ++E +++ WW ++TG PSNYV
Sbjct: 6 EEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERKN 63
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 63.9 bits (156), Expect = 2e-15
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 2 KSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNY 59
+S QE + IA Y Y + +P +L DE Y+ WW + G PS+Y
Sbjct: 13 RSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSY 72
Query: 60 V 60
+
Sbjct: 73 L 73
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 64.8 bits (158), Expect = 2e-15
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 5 QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYVV 61
++A Y Y++ DL+F + E + E DWW ++G PSNYVV
Sbjct: 23 LTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVV 82
Query: 62 PYE 64
P +
Sbjct: 83 PAD 85
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 63.5 bits (155), Expect = 2e-15
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQVDQQA 71
I + + L +++ VT+ N W G + R GLFP +V ++ Q +
Sbjct: 7 IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNPDEN 66
Query: 72 D 72
+
Sbjct: 67 E 67
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 63.5 bits (155), Expect = 2e-15
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 12 YIAAYPYD-STEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPYE 64
+ AAY + S +L + +++++++ + W + G + G P+ Y+ PY+
Sbjct: 5 FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYK 61
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding
protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A
1neb_A 3i35_A
Length = 64
Score = 63.4 bits (155), Expect = 2e-15
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD--RTGLFPSNYV 60
+ Y A Y Y + + +++F + I + ++ W GT+ RTG+ P+NY+
Sbjct: 5 NLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYI 60
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 63.6 bits (155), Expect = 3e-15
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 1 MKSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGD--RTGLFP 56
M + + I + +PG+L F + +V+ + + + W+ + GL
Sbjct: 9 MPTRRWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLA 68
Query: 57 SNYVVPYEA 65
+ +
Sbjct: 69 AGALRERSG 77
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 63.5 bits (155), Expect = 3e-15
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYV 60
+ + + ++T Q +V+ V ++E+ W G TG FP ++
Sbjct: 20 VEITKAFFAKQADEVTLQQADVVLVLQQEDGWLYGERLRDGETGWFPEDFA 70
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 62.6 bits (153), Expect = 4e-15
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVT--KKENDWWTGTIGD--RTGLFPSNYVVP 62
E I Y + + +LT + +Y+ KK DWW + D ++GL P+ ++ P
Sbjct: 2 MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 62.7 bits (153), Expect = 5e-15
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT--IGDRTGLFPSNYV 60
+ +A Y ++ +L + ++++++ K W G +TGL P +V
Sbjct: 5 NQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 59
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 63.4 bits (154), Expect = 6e-15
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 3 SLQELSQEYYIAAYPYDSTEP--------GDLTFNQDEVIYVTKK--ENDWWTGTIGDRT 52
+EL ++A + YD +L F + ++I V + ++ G R
Sbjct: 11 GAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARL 70
Query: 53 GLFPSNYVVPYEAQVDQQAD 72
GL P N V +A ++ D
Sbjct: 71 GLIPCNMVSEIQADDEEMMD 90
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 66.9 bits (162), Expect = 7e-15
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYEAQVDQ 69
I ++ + L E++ VTK W G + G FP +V + Q +
Sbjct: 241 RVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNPE 300
Query: 70 QAD 72
+
Sbjct: 301 EDF 303
Score = 53.0 bits (126), Expect = 6e-10
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPYE 64
EY A + ++ + DL F + +++ + K E WW + + G+ P YV Y
Sbjct: 133 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYR 191
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 61.8 bits (151), Expect = 7e-15
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVVP 62
S++ + A + + +L D+ + V + D W+ G+FP+ Y +
Sbjct: 2 SEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 59
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 66.8 bits (162), Expect = 7e-15
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYV 60
E + + + DL F Q E + + K DWW TGL P+NYV
Sbjct: 146 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYV 200
Score = 61.0 bits (147), Expect = 8e-13
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
++ +P L + + + VT+K ++ + + + G P Y+
Sbjct: 252 VTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYL 301
Score = 26.7 bits (58), Expect = 1.1
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 11/72 (15%)
Query: 19 DSTEPGD--LTFNQDEVIYVTK---------KENDWWTGTIGDRTGLFPSNYVVPYEAQV 67
DS+ PG+ LT + + KE+ + FP + ++
Sbjct: 71 DSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKM 130
Query: 68 DQQADLIRCTCQ 79
+
Sbjct: 131 RVLTEASLLAAY 142
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 61.8 bits (151), Expect = 8e-15
Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYV 60
+ +A Y ++ +L + ++++++ K W G +TGL P +V
Sbjct: 2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 55
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton,
phosphorylation, SH3 domain, DNA damage, DNA repair,
nucleus; NMR {Saccharomyces cerevisiae}
Length = 71
Score = 61.9 bits (151), Expect = 8e-15
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVT--KKENDWWTGTIGD--RTGLFPSNYVVPY 63
S++ I Y + + +LT + +Y+ KK DWW + D ++GL P+ ++ P
Sbjct: 5 SKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 64
Query: 64 E 64
Sbjct: 65 R 65
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3,
signaling protein; NMR {Homo sapiens}
Length = 67
Score = 61.9 bits (151), Expect = 1e-14
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 60
I ++ + L E++ VTK + W G + G FP +V
Sbjct: 12 IQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHV 60
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 66.6 bits (161), Expect = 1e-14
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ A + + +L F +VI++ + N DW GT+ TG+FP ++V
Sbjct: 173 AAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 226
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 64.0 bits (155), Expect = 1e-14
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 3 SLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYV 60
+ ++ E + + + DL F Q E + + K DWW TGL P+NYV
Sbjct: 112 AYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYV 171
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 61.6 bits (150), Expect = 1e-14
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 8 SQEYYIAAYPYDSTEP-------GDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSN 58
S + IAA YD + G L +V+ V +D ++ G +G GL P++
Sbjct: 6 SGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAH 65
Query: 59 YV 60
+
Sbjct: 66 LL 67
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 60.3 bits (147), Expect = 3e-14
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYVVPYEAQ 66
++Y + Y + + +L+ +D+V+ + WW +G P+N +
Sbjct: 1 KKYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIMRTP 59
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel
beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP:
b.34.2.1 PDB: 1n5z_A
Length = 92
Score = 61.0 bits (148), Expect = 4e-14
Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 2 KSLQELSQEYYIAAYPYDSTEP-GDLTFNQDEVIYVTKK------ENDWWTGTIGD-RTG 53
+ + E+ A Y + P ++ + +++ + K ++DWW + G
Sbjct: 7 EPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIG 66
Query: 54 LFPSNYVVPYEAQVDQQA 71
P NY+ + + +
Sbjct: 67 YIPYNYIEIIKRRKKIEH 84
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 59.8 bits (145), Expect = 6e-14
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD----RTGLFPSNYVVPY 63
++ Y++ Y+ E F + + V ++ N WW I D G PSNY+
Sbjct: 10 KDVYVSIADYEGDE-ETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKK 68
Query: 64 EA 65
+
Sbjct: 69 NS 70
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 60.6 bits (147), Expect = 7e-14
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 1 MKSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-----WWTGTIGD--RTG 53
+ ++ + E YPY +L + I+++ E W GT +G
Sbjct: 8 SRDIRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSG 67
Query: 54 LFPSNYVVP 62
L P NY+
Sbjct: 68 LLPENYITK 76
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 59.8 bits (145), Expect = 1e-13
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-----DWWTGTI-GDRTGLFPSNYV 60
A Y + + +++F +++ + KE W ++ G TGL P+NYV
Sbjct: 20 ARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYV 74
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 62.4 bits (151), Expect = 1e-13
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYEAQ 66
IA Y + +T +L+F + +++ V +E D W+ + + G P NY+
Sbjct: 3 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHP 59
Score = 58.5 bits (141), Expect = 3e-12
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYE 64
Y A + +D E G+L F + + I+V + +WW G +TG+FP NYV P
Sbjct: 157 QPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVN 214
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 59.3 bits (144), Expect = 1e-13
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 2 KSLQELSQEYYIAAYPYDSTEPG-DLTFNQDEVIYVTKK------ENDWWTGTIGD-RTG 53
+ + E+ A Y + P ++ + +++ + K ++DWW + G
Sbjct: 7 EPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIG 66
Query: 54 LFPSNYV 60
P NY+
Sbjct: 67 YIPYNYI 73
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 58.8 bits (143), Expect = 2e-13
Identities = 9/56 (16%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYV 60
S + +A Y ++ + G ++ + E + + +++ W + G P++Y+
Sbjct: 6 SGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYL 61
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 59.7 bits (144), Expect = 2e-13
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 16/71 (22%)
Query: 10 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND------WWTGT----------IGDRTG 53
A + Y +T+ +L +V+ V +N W G + G
Sbjct: 45 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRG 104
Query: 54 LFPSNYVVPYE 64
+FP N+ +
Sbjct: 105 VFPENFTERVQ 115
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 58.2 bits (141), Expect = 3e-13
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 5 QELSQEYYIAAYPYDSTEP-GDLTFNQDEVIYVTKK------ENDWWTGTIGD-RTGLFP 56
+ A Y + P ++ + +++ + K ++DWW + G P
Sbjct: 3 HHHHHHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIP 62
Query: 57 SNYV 60
NY+
Sbjct: 63 YNYI 66
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein
1; IRTKS-SH3, espfu, complex structure, protein
binding; NMR {Homo sapiens}
Length = 67
Score = 57.3 bits (139), Expect = 5e-13
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 14 AAYPYD-STEPGDLTFNQDEVIYVTKKEND--WWTGTI--GDRTGLFPSNYVVPYE 64
+P+ + L+F Q +VI + E W G G FPS+Y E
Sbjct: 11 TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE 66
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 57.4 bits (139), Expect = 6e-13
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 8 SQEYYIAAYPYDSTE-PGDLTFNQDEVIYVTKKEND--WWTGTI--GDRTGLFPSNYVVP 62
S + +P+ + L+F Q +V+ + E W G G FPS+Y
Sbjct: 6 SGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKL 65
Query: 63 YE 64
Sbjct: 66 LS 67
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 57.1 bits (138), Expect = 7e-13
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 60
+ Y + +L+ + V + +D WW G+ + G FPSNYV
Sbjct: 4 AFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYV 53
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 56.9 bits (138), Expect = 8e-13
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 8 SQEYYIAAYPYDSTEPGD-LTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYVVPY 63
S A PY D ++F + ++ V + E+ W T D GL + V
Sbjct: 6 SGRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 65
Query: 64 E 64
Sbjct: 66 S 66
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 57.2 bits (138), Expect = 9e-13
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 11 YYIAAYPY-DSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI------GDRTGLFPSNYV 60
A + + +P L +VI V ++ + W G I DR G FP V
Sbjct: 20 KVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIV 77
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 56.9 bits (138), Expect = 9e-13
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 8 SQEYYIAAYPYDSTE-PGDLTFNQDEVIYVTKKEND--WWTGTI--GDRTGLFPSNYVVP 62
+ A + + + + L+F + ++I + E W G G FP +Y
Sbjct: 6 GRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65
Query: 63 YE 64
+
Sbjct: 66 LD 67
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 60.9 bits (146), Expect = 1e-12
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGD-RTGLFPSNYV 60
+ A Y Y+ E +L+F + + + E W G + + + GL+P+NYV
Sbjct: 428 EVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYV 482
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 57.5 bits (139), Expect = 2e-12
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRT---GLFPSNYV 60
Y I Y + + + +LT E +++ N +W+ R GL P +V
Sbjct: 7 YAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFV 60
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein
complex, DOCK2, ELMO1, SH3 domain, PH domain bundle,
proline-rich sequence, cytoskeleton; 2.10A {Homo
sapiens}
Length = 184
Score = 58.9 bits (142), Expect = 2e-12
Identities = 12/65 (18%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGD---RTGLFPSNYVVPYEA 65
+ + +A Y + + L+ +V+ + + DW+ G + G+FP +++ E
Sbjct: 17 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCGDWYRGYLIKHKMLQGIFPKSFIHIKEV 76
Query: 66 QVDQQ 70
V+++
Sbjct: 77 TVEKR 81
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 60.0 bits (144), Expect = 2e-12
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 1 MKSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNY 59
+ I + + L +++ VT+ N W G + R GLFP +
Sbjct: 231 PSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTH 290
Query: 60 VVPYEAQVDQQAD 72
V ++ Q + +
Sbjct: 291 VKIFDPQNPDENE 303
Score = 50.8 bits (120), Expect = 4e-09
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYV 60
Y Y + + DL F + E++ + +K E WW+ D R G+ P YV
Sbjct: 127 YVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYV 178
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 56.2 bits (135), Expect = 2e-12
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKE--NDWWTG--TIGDRTGLFPSNYVVPY 63
Y P G L N +++ +TK E ++WW G T + G FP N V PY
Sbjct: 21 YYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY 76
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 56.9 bits (137), Expect = 3e-12
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 7 LSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRT---GLFPSNYV 60
++ + + Y + + +L + E + + + +W+ +R GL P +YV
Sbjct: 1 MAPLFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYV 58
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 55.4 bits (134), Expect = 4e-12
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGD-RTGLFPSNYV 60
Y Y +++P +LT + EV+ V + DW + G P Y+
Sbjct: 17 KVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYL 67
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 77
Score = 54.6 bits (132), Expect = 1e-11
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 14 AAYPYD-STEPGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYV 60
Y + +LT + E+I VT W G GL P++YV
Sbjct: 14 VMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYV 64
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 54.5 bits (131), Expect = 2e-11
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 11 YYIAAYPYDSTE------PGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYV 60
+A Y Y+ + +L + +YV ++ ++ G + D + GL PSN+V
Sbjct: 19 LCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFV 77
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain,
SH2 domain, SRC homology 3, RAS signaling pathway,
proto- oncogene, phosphorylation; 1.5A {Homo sapiens}
PDB: 2j06_A
Length = 65
Score = 53.2 bits (128), Expect = 2e-11
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 9 QEYYIAAYPYDSTEPGD-LTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVP 62
+ A PY D ++F + ++ V + E+ W T D GL + V
Sbjct: 5 RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE 62
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 52.6 bits (127), Expect = 3e-11
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWT---GTIGDRTGLFPSNYV 60
Y Y + ++T + I + ++ WT TGL P+ Y+
Sbjct: 6 VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 56
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 56.7 bits (137), Expect = 3e-11
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 5 QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVP 62
E ++A Y + ++ L+ + E + V ++ W + G PSNY+ P
Sbjct: 39 SENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITP 98
Query: 63 YE 64
Sbjct: 99 VN 100
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex,
GRB2,VAV, signaling protein/signaling protein complex;
1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 52.7 bits (126), Expect = 4e-11
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 1 MKSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTG--TIGDRTGLFP 56
M+ QE Y P L N +++ +TK E + WW G T + G FP
Sbjct: 7 MEVFQE-----YYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFP 61
Query: 57 SNYVVPY 63
N V PY
Sbjct: 62 CNRVHPY 68
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor
complex, DOWN-regulated kinase, ordered activation
loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A*
2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 55.9 bits (135), Expect = 6e-11
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWT--GTIGDRTGLFPSNYVVPYE 64
+A Y Y++ DL+F + + + V ++ +WW + G PSNYV +
Sbjct: 11 VVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 65
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 53.7 bits (128), Expect = 3e-10
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 16 YPYDSTEPGDLTFNQDEVIYVT-KKENDWWTGTIGD-RTGLFPSNYVVPYE 64
+ ++ + DL F + +++ + K E WW + + G+ P YV Y
Sbjct: 143 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYR 193
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 53.2 bits (126), Expect = 3e-10
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 16/75 (21%)
Query: 4 LQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND------WWTGTIGD------- 50
L A + Y +T+ +L +V+ V +N W G
Sbjct: 137 LPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKK 196
Query: 51 ---RTGLFPSNYVVP 62
G+FP N+
Sbjct: 197 LEKCRGVFPENFTER 211
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 50.1 bits (120), Expect = 4e-10
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 8 SQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI 48
+E +A Y Y P ++T + +++ + N DWW +
Sbjct: 20 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 50.8 bits (121), Expect = 7e-10
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 13 IAAYPYDSTEPGDLTFNQDEVIYVTKKE----NDWWTGTIGD--------RTGLFPSNYV 60
+A Y + + LT ++ +V+YV K +W G++ R G FPS+ V
Sbjct: 26 VALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIV 85
Query: 61 ----VPYEAQVDQQADLIRCTCQ 79
+VD + D CQ
Sbjct: 86 REDQTLKPGKVDVKTDKWDFYCQ 108
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 51.5 bits (123), Expect = 2e-09
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 2 KSLQELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 60
+ + + S A + + + + +L F +VI V N +WW G + D G FP+++V
Sbjct: 23 ELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 82
Query: 61 VPYEAQVDQQAD 72
Q + D
Sbjct: 83 RLRVNQDEPADD 94
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural
genomics/proteomics initiative RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 92
Score = 48.4 bits (115), Expect = 3e-09
Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKE-----NDWWTGTIGDRTGLFPSNYVVPYEAQ 66
+ A +++ + D++ + +++ V KK+ + W G G S+++ PY +
Sbjct: 20 FQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPR 79
Query: 67 VDQQA 71
Sbjct: 80 RSHSD 84
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 48.1 bits (114), Expect = 4e-09
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 18/67 (26%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----------------WWTGTIG--DRTG 53
Y A YP+ P DL +V+ V++ W G + G
Sbjct: 14 YRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRG 73
Query: 54 LFPSNYV 60
FP YV
Sbjct: 74 DFPGTYV 80
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 50.5 bits (121), Expect = 5e-09
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWT--GTIGDRTGLFPSNYVVPYE 64
++A Y Y+S DL+F + E + + E DWW +TG PSNYV P +
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 50.0 bits (120), Expect = 6e-09
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 5 QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYV--TKKENDWW-----TGTIGDRTGLFPS 57
S IA Y + T DL F + +V+ + K+ +W+ G R G+ P+
Sbjct: 7 SWPSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVG----REGIIPA 62
Query: 58 NYVVPYE 64
NYV E
Sbjct: 63 NYVQKRE 69
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 49.1 bits (117), Expect = 2e-08
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWT--GTIGDRTGLFPSNYVVPYE 64
++A Y Y+S DL+F + E + + E DWW +TG PSNYV P +
Sbjct: 88 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 143
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 47.8 bits (113), Expect = 3e-08
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 5 QELSQEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPSNYVVP 62
L IA + Y+ + GDL F + E + + ++ +WW + G P N+V
Sbjct: 8 SPLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 67
Query: 63 Y 63
Sbjct: 68 A 68
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 47.1 bits (112), Expect = 7e-08
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQVDQ 69
I Y Y + +L F++ ++I V KE+ DWW G + + GLFPSNYV
Sbjct: 4 QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPS 63
Query: 70 QADLIRCTC 78
Q
Sbjct: 64 QQWCSDLHL 72
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 41.4 bits (96), Expect = 1e-05
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 9 QEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD--RTGLFPSNYVVP 62
IA Y + ++ ++I V D + G RTGL+PS V
Sbjct: 442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVRE 498
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3
domain, peptide complex, alternative splicing, disease
mutation, HOST-virus interaction, phosphoprotein,
polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A
1pnj_A 2pni_A 1pks_A 1pkt_A
Length = 83
Score = 37.8 bits (87), Expect = 4e-05
Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 18/67 (26%)
Query: 12 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----------------WWTGTI--GDRTG 53
Y A Y Y D+ + +++ V K W G G
Sbjct: 8 YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERG 67
Query: 54 LFPSNYV 60
FP YV
Sbjct: 68 DFPGTYV 74
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 34.8 bits (79), Expect = 0.002
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 10/80 (12%)
Query: 11 YYIAAYPYDSTEPGDLTFNQDEVIYVT----------KKENDWWTGTIGDRTGLFPSNYV 60
Y + + + P L F + +V +V W R +
Sbjct: 6 YIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGI 65
Query: 61 VPYEAQVDQQADLIRCTCQV 80
+P +++ +Q A L V
Sbjct: 66 IPNQSRAEQLASLEAAQRAV 85
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 29.9 bits (68), Expect = 0.070
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 14 AAYPYDSTEPGDLTFNQDEVIYVTKKEND----WWTGTIGDRTGLFPSNYV 60
A + Y+ +L + + + + +E++ WW + D+ G P N +
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLL 225
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.2 bits (52), Expect = 8.7
Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 3 SLQELSQEYYIAAYPYDSTEPG-DLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVV 61
S+ ++ + + E G + N +I+ T + T I ++Y
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT- 1718
Query: 62 PYEAQVDQQADLIRCTC--QVYLIFLISLMIYKRVR 95
+ ++ L+ T Q + L+ ++ ++
Sbjct: 1719 -FRSE----KGLLSATQFTQP-ALTLMEKAAFEDLK 1748
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.422
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,443,053
Number of extensions: 68687
Number of successful extensions: 567
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 209
Length of query: 95
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 33
Effective length of database: 4,970,691
Effective search space: 164032803
Effective search space used: 164032803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)