Query psy7084
Match_columns 326
No_of_seqs 186 out of 616
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 17:42:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o7d_D Lysosomal alpha-mannosi 100.0 8.3E-50 2.8E-54 370.6 21.8 188 132-326 2-210 (282)
2 3bvx_A Alpha-mannosidase 2; fa 100.0 4.9E-44 1.7E-48 384.7 28.5 258 47-326 525-865 (1045)
3 2wyh_A Alpha-mannosidase; hydr 100.0 3.5E-30 1.2E-34 274.7 26.3 203 99-326 514-775 (923)
4 3lvt_A Glycosyl hydrolase, fam 100.0 3.6E-27 1.2E-31 250.6 27.7 204 98-326 489-749 (899)
5 1o7d_C Lysosomal alpha-mannosi 99.5 1.2E-14 4.1E-19 124.1 8.3 75 47-121 59-150 (159)
6 1wn9_A The hypothetical protei 59.1 0.79 2.7E-05 36.4 -2.3 27 2-28 15-41 (131)
7 1wmx_A COG3291: FOG: PKD repea 17.1 32 0.0011 29.6 0.3 27 11-37 117-149 (205)
8 3op0_A Signal transduction pro 12.9 69 0.0024 29.4 1.4 30 183-213 248-281 (323)
9 2zvv_Y Cyclin-dependent kinase 12.5 60 0.0021 18.2 0.5 14 20-33 8-21 (26)
10 3bux_B E3 ubiquitin-protein li 9.0 1.2E+02 0.0042 27.9 1.6 29 184-213 264-296 (329)
No 1
>1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: b.30.5.6
Probab=100.00 E-value=8.3e-50 Score=370.56 Aligned_cols=188 Identities=41% Similarity=0.690 Sum_probs=169.8
Q ss_pred ceeEeeceEEEEEcC-CCCEEEEEE--CCceeeeeEEEEEEeccccCCCCCCCCCCCCceeEecCCCCceEeeccc----
Q psy7084 132 DNFIGTSMFGLRLDK-DGLVSQLLK--NNHSLPMTQTFGYYVGHESDYGNNDNGEMSSGAYIFKPEVNKSVVSKSE---- 204 (326)
Q Consensus 132 ~~~IeN~~lkl~fd~-~G~L~sl~~--~~~~~~~~~~f~~Y~~~~~~~Gd~~~~~~~sGAYiF~P~~~~~~~~~~~---- 204 (326)
++.|+|+++++.||+ +|+|+++++ +|.+.++.++|.+|.+.. |++ .+.+.||||+|+|++..+.++...
T Consensus 2 ~~~i~n~~~~l~fd~~tG~L~si~~~~~g~~~~v~q~f~~Y~s~~---g~~-~~~~~SGAYiFrP~g~~~~~~~~~~~~~ 77 (282)
T 1o7d_D 2 DLVIQNEYLRARFDPNTGLLMELENLEQNLLLPVRQAFYWYNAST---GNN-LSSQASGAYIFRPNQNKPLFVSHWAQTH 77 (282)
T ss_dssp CCEEECSSEEEEECTTTCSEEEEEEC---CEEECEEEEEEEEBCC---CBT-TBSCCCCSSCCCBSSSSCEESCSCCEEE
T ss_pred cEEEcCceEEEEECCCCCcEEEEEEcCCCeEEEEeEEEEEEeccc---CCC-CCCCCCceEEecCCCCCCcccCCCcEEE
Confidence 578999999999999 899999997 789999999999999875 543 246899999999997655555433
Q ss_pred c-cCccEEEEEEEecCcEEE--EEEecCCCCeEEE------EcCCCCcceE-EEEE----ecCCCeEEecCCCCeeEEee
Q psy7084 205 V-NDSTVEDVVRLLSNGEVT--TTVYKGPGKTSEV------SPSHDNFIGT-SIPS----FNSQNRFYTDSNGREMIERI 270 (326)
Q Consensus 205 v-~Gpl~~ev~~~~~~~~~s--vrLy~~~~~~vEV------i~i~d~~~~k-vv~r----i~s~~~fyTDsNG~~~ikR~ 270 (326)
+ +||+++||++.+ ++|++ +|||++.. ++|+ ||++++ .|| +++| |+|++.||||+||+||+||.
T Consensus 78 v~~G~lv~eV~~~~-~~~~sq~~Rly~~~~-~vE~e~~Vgpipi~d~-~~kEiv~r~~T~i~s~~~FYTDsNG~e~~kR~ 154 (282)
T 1o7d_D 78 LVKASLVQEVHQNF-SAWCSQVVRLYPRQR-HLELEWTVGPIPVGDG-WGKEVISRFDTALATRGLFYTDSNGREILERR 154 (282)
T ss_dssp EEECSSCEEEEEEE-ETTEEEEEEECTTCS-SEEEEEEECCCCCTTS-CCEEEEEEEECCCCCTTEEEEESTTSSEEEEE
T ss_pred EEECCEEEEEEEEE-CCcEEEEEEEecCCc-eEEEEEEEccccccCC-CCcEEEEEEEeeeccCCeEEECCCCceeeEEE
Confidence 2 999999999999 88998 89999998 9985 688888 899 9999 88899999999999999999
Q ss_pred cccccCcccccccccccceEeeeeeEEEeeCceeEEEEeCCcceeeccCCCeeeeC
Q psy7084 271 LNYRQTWELDNQEPISSNYYPVTSRIAVVDDVLQMSVLTDRAQGGTSLKKGEIELM 326 (326)
Q Consensus 271 ~~~r~~w~~~~~~pia~NyYP~~s~~~I~D~~~~ltVl~drs~G~sSl~~G~lElM 326 (326)
+++|++|+++.++|++||||||+++|||+|++.||+|++|||+||||+++|+||||
T Consensus 155 ~~~r~~~~~~~~~pv~gNYYPv~s~~~IqD~~~rltvl~drs~G~sSl~~G~lElM 210 (282)
T 1o7d_D 155 RNYRPTWKLNQTEPVAGNYYPVNSRIYITDGNMQLTVLTDRSQGGSSLRDGSLELM 210 (282)
T ss_dssp TTCCSSSCCCCSCTTGGGCEEESSEEEEECSSEEEEEEESSCEEECCSSTTEEEEE
T ss_pred eccccccccccccCcccceeeeeeEEEEEcCCeEEEEEecccccccccCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999
No 2
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ...
Probab=100.00 E-value=4.9e-44 Score=384.72 Aligned_cols=258 Identities=24% Similarity=0.333 Sum_probs=208.3
Q ss_pred CcccccccccccccCCc----CCC---eeEEEEEcCCCceEEEEEEEe---e--------------eeec-c--------
Q psy7084 47 TVKTCLYLNISSCEPSE----TWD---KFAINVYNALGRTVNRYVLQL---A--------------ERTS-Q-------- 93 (326)
Q Consensus 47 ~~~~c~~ln~s~C~~t~----~~~---~~~vvVyNpL~~~r~~vV~v~---P--------------qi~~-~-------- 93 (326)
+...|.++|++.||.+. .++ ...|+|||||+|+|+++|+|+ | |+.. .
T Consensus 525 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vvvfN~L~~~r~~~V~v~v~~~~~~V~D~~G~~v~~Qi~~~~~~~~~~~~ 604 (1045)
T 3bvx_A 525 TLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDTLT 604 (1045)
T ss_dssp EEECSSSSCTTTCCCCCEECCBTTTBSEEEEEEEECSSSCEEEEEEEEESCSCEEEEETTCCEECEEEEEEEEEEEETTT
T ss_pred chhhhcccccccccccccccccccccCCceEEEEcCCCcceeeEEEEEeccCceEEEcCCCCEEeEEEeecccccccccc
Confidence 44467778888998752 233 577999999999999999998 1 2210 0
Q ss_pred ------CCCCcEEEEEEEecCCCceEEEEEEeCCCCCC---C--C----------------CCCCceeEeeceE------
Q psy7084 94 ------NSSAKMELVFKATLPPMGYSSFFVSTGPGKTS---E--V----------------SPSHDNFIGTSMF------ 140 (326)
Q Consensus 94 ------~~~~~~~L~F~a~vPpLG~~ty~v~~~~~~~~---~--~----------------~~~~~~~IeN~~l------ 140 (326)
.....|+|+|.|+||||||++|+|........ . . ...+...|||+++
T Consensus 605 ~~~~~~~~~~~~~L~f~a~vP~lG~~ty~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~leN~~~~~~~~~ 684 (1045)
T 3bvx_A 605 KTIHPQGSTTKYRIIFKARVPPMGLATYVLTISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGP 684 (1045)
T ss_dssp TEEEEEEEEEEEEEEEEEEECTTEEEEEEEEECSSCCTTEEECEEEEECSSCCCCCCTTCSSCCEEECCCCEEEECTTSC
T ss_pred ccccccCCCCcEEEEEEeccCCceeEEEEEEecCCccccccccceeecccccccccccccccCCCceeeccccccccccc
Confidence 02356899999999999999999987544321 0 0 1223478999999
Q ss_pred EEEEcCCCCEEEEEE--CCceeeeeEEEEEEeccccCCCCCCCCCCCCceeEecCCCCceEeeccc----c-cCccEEEE
Q psy7084 141 GLRLDKDGLVSQLLK--NNHSLPMTQTFGYYVGHESDYGNNDNGEMSSGAYIFKPEVNKSVVSKSE----V-NDSTVEDV 213 (326)
Q Consensus 141 kl~fd~~G~L~sl~~--~~~~~~~~~~f~~Y~~~~~~~Gd~~~~~~~sGAYiF~P~~~~~~~~~~~----v-~Gpl~~ev 213 (326)
+|+||++|.|++|++ +|++..+.++|.+|.+.. | ++.||||+|+|++.+....... + +||++++|
T Consensus 685 ~v~fd~~G~L~si~dk~~g~e~~~~~~f~~Y~~~~---~-----~~~sgaY~F~P~~~~~~~~~~~~~~~v~~Gpl~~ev 756 (1045)
T 3bvx_A 685 TLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRS---H-----GDRSGAYLFLPNGPASPVELGQPVVLVTKGKLESSV 756 (1045)
T ss_dssp EEEECTTSCEEEEECSTTSCCEEEEEEEEEECBCS---S-----SCCCCSSCCCBSSSCEECCCCSCCEEEEECSSCEEE
T ss_pred EEEECCCCcEEEEEEcCCCeEEEEeeEEEEEeccc---C-----CCCCcceEecCCCCCcccccCCceEEEEeCCeEEEE
Confidence 999999999999998 788888999999998653 2 3579999999986543222211 3 89999999
Q ss_pred EEEecCcEEE--EEEecCCCCeEEE---EcCCCCcceE-EEEE----ecCCCeEEecCCCCeeEEeecccccCccccccc
Q psy7084 214 VRLLSNGEVT--TTVYKGPGKTSEV---SPSHDNFIGT-SIPS----FNSQNRFYTDSNGREMIERILNYRQTWELDNQE 283 (326)
Q Consensus 214 ~~~~~~~~~s--vrLy~~~~~~vEV---i~i~d~~~~k-vv~r----i~s~~~fyTDsNG~~~ikR~~~~r~~w~~~~~~ 283 (326)
++.+ +|++ +|| +.+ +||| |++.+. .++ ++++ |++++.||||+|||++|||+++.+ +
T Consensus 757 ~~~~--~~i~q~irL--~~~-~ieie~~Vd~~~~-~~~el~~rf~t~i~s~~~fyTD~nG~~~ikR~~~~~--------~ 822 (1045)
T 3bvx_A 757 SVGL--PSVVHQTIM--RGG-APEIRNLVDIGSL-DNTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDK--------L 822 (1045)
T ss_dssp EEEE--TTEEEEEEE--SSS-SCEEEEEECCTTC-TTEEEEEEEEECCCCTTEEEEEETTTEEEEEECCTT--------S
T ss_pred EEEE--eeEEEEEEE--CCe-eEEEEEEEecCCC-CCeEEEEEeecccCCCCeEEEecCCceeEEcCCCCC--------C
Confidence 9999 5666 999 666 8886 888876 688 8888 788889999999999999998653 7
Q ss_pred ccccceEeeeeeEEEeeCceeEEEEeCCcceeeccCCCeeeeC
Q psy7084 284 PISSNYYPVTSRIAVVDDVLQMSVLTDRAQGGTSLKKGEIELM 326 (326)
Q Consensus 284 pia~NyYP~~s~~~I~D~~~~ltVl~drs~G~sSl~~G~lElM 326 (326)
|+++|||||+++|+|+|++.|||||+||+|||||+.+|+||||
T Consensus 823 p~~~NyYPv~s~~~i~D~~~~ltvl~drs~G~sSl~~G~lElm 865 (1045)
T 3bvx_A 823 PLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELEIM 865 (1045)
T ss_dssp CGGGGCEEESSEEEEECSSEEEEEEESSCEEEECCSTTEEEEE
T ss_pred CcccceEEeeeeEEEEcCCeeEEEEecCCccccccCCCeEEEE
Confidence 8999999999999999999999999999999999999999999
No 3
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Probab=99.97 E-value=3.5e-30 Score=274.71 Aligned_cols=203 Identities=13% Similarity=0.158 Sum_probs=159.3
Q ss_pred EEEEEEEecCCCceEEEEEEeCCCCCC-C--CC-CCCceeEeeceEEEEEcCCCCEEEEEE--CCceeeeeEEEEEEecc
Q psy7084 99 MELVFKATLPPMGYSSFFVSTGPGKTS-E--VS-PSHDNFIGTSMFGLRLDKDGLVSQLLK--NNHSLPMTQTFGYYVGH 172 (326)
Q Consensus 99 ~~L~F~a~vPpLG~~ty~v~~~~~~~~-~--~~-~~~~~~IeN~~lkl~fd~~G~L~sl~~--~~~~~~~~~~f~~Y~~~ 172 (326)
++|.|.|+||||||++|++........ + .. ..++..|||++++|+||++|.+ +|.+ +|++. .+|.+|++.
T Consensus 514 ~~l~f~a~vP~lG~~~~~i~~~~~~~~~~~~~~~~~~~~~leN~~~~v~~d~~G~l-si~dk~~gr~~---~~~~~y~d~ 589 (923)
T 2wyh_A 514 VRLRLPITLPAMSWKTLALKLGNETTPSETVSLYDDSNQCLENGFLKVMIQTDGRL-TITDKQSGLIY---QDLLRFEDC 589 (923)
T ss_dssp EEEEEEEEECTTEEEEEEEEEEC------CCCSEETTTTEEECSSEEEEECTTSCE-EEEETTTCCEE---EEESEEEEE
T ss_pred EEEEEEEEcCCcceEEEEEEECCCcccccccccccCCCceEecCeEEEEEeCCCCE-EEEECCCCeEE---EEEEEEeec
Confidence 589999999999999999987543221 1 01 2345789999999999999998 8998 56663 389999875
Q ss_pred ccCCCCCCCCCCCCceeEecCCCCceEee--cc----cc--cCccEEEEEEEec--------------------------
Q psy7084 173 ESDYGNNDNGEMSSGAYIFKPEVNKSVVS--KS----EV--NDSTVEDVVRLLS-------------------------- 218 (326)
Q Consensus 173 ~~~~Gd~~~~~~~sGAYiF~P~~~~~~~~--~~----~v--~Gpl~~ev~~~~~-------------------------- 218 (326)
| +.||||+|+|+.++.... .. .+ +||++++|++.+.
T Consensus 590 ----~------d~~day~f~p~~~~~~~~~~~~~~~i~v~~~gpl~~~v~~~~~~~vP~~~~~~L~~~~~~~~~~~~r~~ 659 (923)
T 2wyh_A 590 ----G------DIGNEYISRQPNHDQPFYADQGTIKLNIISNTAQVAELEIQQTFAIPISADKLLQAEMEAVIDITERQA 659 (923)
T ss_dssp ----E------CCSCSSCCCCCTTCCCEEGGGSEEEEEEEEECSSEEEEEEEEEEEEESSBCTHHHHHHHTTCCGGGCCC
T ss_pred ----C------CCCCeeEEEcCCCCceeeccCCCceEEEEEcCCCEEEEEEEEEecCCccchhhhccccccccchhhhhh
Confidence 3 469999999986543221 11 12 5999999998761
Q ss_pred --Cc-----EEE--EEEecCCCCeEEE---EcCCCCcceE-EEEE----ecCCCeEEecCCCCeeEEeeccccc-Ccccc
Q psy7084 219 --NG-----EVT--TTVYKGPGKTSEV---SPSHDNFIGT-SIPS----FNSQNRFYTDSNGREMIERILNYRQ-TWELD 280 (326)
Q Consensus 219 --~~-----~~s--vrLy~~~~~~vEV---i~i~d~~~~k-vv~r----i~s~~~fyTDsNG~~~ikR~~~~r~-~w~~~ 280 (326)
++ +++ ++||++++ +||| |++... ++ ++++ |+++. +++| |||++++|+++.++ +|+.
T Consensus 660 ~~s~~~~~~~i~q~i~L~~~~~-~ie~~~~vd~~~~--~~~l~v~fpt~i~s~~-~~~d-~~fg~i~R~~~~~~~~w~~- 733 (923)
T 2wyh_A 660 RRSQEKAELTLTTLIRMEKNNP-RLQFTTRFDNQMT--NHRLRVLFPTHLKTDH-HLAD-SIFETVKRPNHPDATFWKN- 733 (923)
T ss_dssp CBCSCEEEEEEEEEEEEETTCS-CEEEEEEEEECCC--SEEEEEEEECCCCCSE-EEEE-ETTEEEEEESSCCTTTCCC-
T ss_pred cccccccceEEEEEEEEeCCCc-eEEEEEEECCccC--CEEEEEEeccccCCCC-EEEe-cCceEEEccCCCCCCCccc-
Confidence 22 465 99999999 9997 777654 66 7777 66655 5566 99999999998887 8872
Q ss_pred cccccccceEeeeeeEEEeeCceeEEEEeCCcceeecc-CCCeeeeC
Q psy7084 281 NQEPISSNYYPVTSRIAVVDDVLQMSVLTDRAQGGTSL-KKGEIELM 326 (326)
Q Consensus 281 ~~~pia~NyYP~~s~~~I~D~~~~ltVl~drs~G~sSl-~~G~lElM 326 (326)
++||||+.++|+|+|++.++||+||+++|++++ .+|+||||
T Consensus 734 -----a~~~~p~~~~v~l~d~~~gvavlnd~~~g~~~~~~~~~i~Lt 775 (923)
T 2wyh_A 734 -----PSNPQHQECFVSLFDGENGVTIGNYGLNEYEILPDTNTIAIT 775 (923)
T ss_dssp -----SCCCEECSSEEEEECSSEEEEEEESSCCEEEEETTTTEEEEE
T ss_pred -----ccceEeeeeEEEEECCCCcEEEEeCCccceEEecCCCeEEEE
Confidence 899999999999999999999999999999888 48999997
No 4
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis}
Probab=99.96 E-value=3.6e-27 Score=250.56 Aligned_cols=204 Identities=14% Similarity=0.194 Sum_probs=151.9
Q ss_pred cEEEEEEE-ecCCCceEEEEEEeCCCCCCCCC--CC-CceeEeeceEEEEEcCCCCEEEEEE--CCceeeeeEEEEEEec
Q psy7084 98 KMELVFKA-TLPPMGYSSFFVSTGPGKTSEVS--PS-HDNFIGTSMFGLRLDKDGLVSQLLK--NNHSLPMTQTFGYYVG 171 (326)
Q Consensus 98 ~~~L~F~a-~vPpLG~~ty~v~~~~~~~~~~~--~~-~~~~IeN~~lkl~fd~~G~L~sl~~--~~~~~~~~~~f~~Y~~ 171 (326)
.++|.|.| +||||||++|.+........... .. +...|||++++|+||++|.| +|.+ +|++ ..++.+|++
T Consensus 489 ~~~l~f~a~~vPalGy~~~~i~~~~~~~~~~~~~~~~~~~~leN~~~~v~~d~~G~l-sl~Dk~~gre---~~~~~~~~d 564 (899)
T 3lvt_A 489 YLTVELSVKEMAPFSWDSFALIQGETKAFEGSLLAQPATNEMENEFIQVKIENNGSL-TIADKKTGET---FSKLLTFED 564 (899)
T ss_dssp EEEEEEEEEEECTTEEEEEEEEESCCCCCCSCCSEETTTTEEECSSEEEEECTTSCE-EEEETTTCCE---EEEETEEEE
T ss_pred eEEEEEEecCCCCCCCEEEEEEecCcccccccccccccCcEEecCcEEEEEcCCCcE-EEEECCCCeE---EEEEEEEec
Confidence 34788988 89999999999987654322111 11 46789999999999999999 7998 6666 346788876
Q ss_pred cccCCCCCCCCCCCCceeEecCCCCceEee-cc-----cc--cCccEEEEEEEec-------------------------
Q psy7084 172 HESDYGNNDNGEMSSGAYIFKPEVNKSVVS-KS-----EV--NDSTVEDVVRLLS------------------------- 218 (326)
Q Consensus 172 ~~~~~Gd~~~~~~~sGAYiF~P~~~~~~~~-~~-----~v--~Gpl~~ev~~~~~------------------------- 218 (326)
. || .||+|+|+|+.++.... .. .+ +||++++|++.+.
T Consensus 565 ~----gd------~g~~Y~~~p~~~d~~~~~~~~~~~v~v~e~gpl~~~v~v~~~~~~P~~~~~~~~~~~~~~~~~~~r~ 634 (899)
T 3lvt_A 565 T----GD------IGNEYIFFKPTEDQGITTENVTAEITNKENSPVKASYQIKQTVMLPVAADERLEEEQKAVREFRERL 634 (899)
T ss_dssp E----EC------CSBTTBCCCCTTCCCEESTTCCCEEEEEEECSSEEEEEEEEEEEEESSBCTHHHHHHHTTCCGGGCC
T ss_pred C----CC------CCCceeecCCcCCceeeccCCCceEEEEEcCCCEEEEEEEEEEccccchhhhhcccccccccchhhh
Confidence 5 43 58999999986552221 11 12 7999999986541
Q ss_pred --Cc------EEE--EEEecCCCCeEEE---EcCCCCcceE-EEEE----ecCCCeEEecCCCCeeEEeecccccCcccc
Q psy7084 219 --NG------EVT--TTVYKGPGKTSEV---SPSHDNFIGT-SIPS----FNSQNRFYTDSNGREMIERILNYRQTWELD 280 (326)
Q Consensus 219 --~~------~~s--vrLy~~~~~~vEV---i~i~d~~~~k-vv~r----i~s~~~fyTDsNG~~~ikR~~~~r~~w~~~ 280 (326)
.+ +++ ++||++++ +||| |+|... .+ +++. |.++..+|+ .+|++++|+.+.+++|+
T Consensus 635 ~~~S~~~~~~~i~q~i~L~~~~~-~id~~~~Vdw~~~--~~~Lrv~Fp~~i~s~~~~~d--~~fG~i~Rpt~~~t~We-- 707 (899)
T 3lvt_A 635 AQRSTTLRPFEITTMVTMIKESN-QLFFETTINNQIK--DHRLRVLFPTGMVTETHEAD--SIYEVVTRPNQVSDTWE-- 707 (899)
T ss_dssp CCBCSCEEEEEEEEEEEEETTCC-CEEEEEEEEECCC--SEEEEEEECCSCCCSEEEEE--CSSSEEEEEC---------
T ss_pred hcccccccceEEEEEEEEeCCCC-EEEEEEEECCCcC--CEEEEEECCCCCCcCceEEe--ccceEEECCCCCCcccc--
Confidence 12 555 99999999 9997 777654 55 6666 666667766 56779999999999998
Q ss_pred cccccccceEeeeeeEEEeeCceeEEEEeCCcceeeccCCCeeeeC
Q psy7084 281 NQEPISSNYYPVTSRIAVVDDVLQMSVLTDRAQGGTSLKKGEIELM 326 (326)
Q Consensus 281 ~~~pia~NyYP~~s~~~I~D~~~~ltVl~drs~G~sSl~~G~lElM 326 (326)
.+.++||+.++++|+|.+.++||+||+++|.+.+.+|.|+||
T Consensus 708 ----~a~~e~~~~~~vdlsd~~~Gvavlnd~~~gy~v~~d~~i~LT 749 (899)
T 3lvt_A 708 ----NPTNPQHQQAFVNVHDQNKGVTIFNEGLNEYEVLADGTIAVT 749 (899)
T ss_dssp ----CCCCCEECSSEEEEECSSCEEEEEESSCCEEEECTTCCEEEE
T ss_pred ----CCCcceeeeeEEEEecCCceEEEEeCCCcceeEcCCCEEEEE
Confidence 367899999999999999999999999999988778999986
No 5
>1o7d_C Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 b.30.5.6
Probab=99.54 E-value=1.2e-14 Score=124.07 Aligned_cols=75 Identities=37% Similarity=0.564 Sum_probs=61.5
Q ss_pred CcccccccccccccCCcCCCeeEEEEEcCCCceEEEEEEEe---e--------------eeeccCCCCcEEEEEEEecCC
Q psy7084 47 TVKTCLYLNISSCEPSETWDKFAINVYNALGRTVNRYVLQL---A--------------ERTSQNSSAKMELVFKATLPP 109 (326)
Q Consensus 47 ~~~~c~~ln~s~C~~t~~~~~~~vvVyNpL~~~r~~vV~v~---P--------------qi~~~~~~~~~~L~F~a~vPp 109 (326)
+|.+|+++|++.||.++.++.+.|+|||||+|+|+++|+++ + |+........++|.|.++|||
T Consensus 59 ~~~~~~~ln~~~~~~~~~~~~~~vvvfN~l~~~r~~~V~v~v~~~~~~v~d~~G~~v~~qi~~~~~~~~~~l~f~a~vP~ 138 (159)
T 1o7d_C 59 DFAFCRKLNISICPLTQTAERFQVIVYNPLGRKVDWMVRLPVSKHVYLVKDPGGKIVPSDVVTIPSSDSQELLFSALVPA 138 (159)
T ss_dssp CEECCTTGGGTCCHHHHHCSEEEEEEEECSSSCEEEEEEEEECSSCEEEECSSSCEECCEEEEETTTTEEEEEEEEEECT
T ss_pred ccccccccccccCccccCCccEEEEEECCCCceEeEEEEEEEcCCcEEEEcCCCCEeeeEEEeccCCCceEEEEEeecCC
Confidence 77789999999999987677789999999999999999997 1 221111223568999999999
Q ss_pred CceEEEEEEeCC
Q psy7084 110 MGYSSFFVSTGP 121 (326)
Q Consensus 110 LG~~ty~v~~~~ 121 (326)
|||++|+|....
T Consensus 139 lG~~ty~i~~~~ 150 (159)
T 1o7d_C 139 VGFSIYSVSQMP 150 (159)
T ss_dssp TEEEEEEEEECC
T ss_pred ceeEEEEEEECC
Confidence 999999998754
No 6
>1wn9_A The hypothetical protein (TT1805); thermus thermophillus, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus} SCOP: d.319.1.1 PDB: 1wna_A
Probab=59.11 E-value=0.79 Score=36.44 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=20.8
Q ss_pred hhhhhhhcccEEEEEeecccchhhhhh
Q psy7084 2 MALQEQLSNIRVTIMLNSFITDWQHVK 28 (326)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (326)
.||++.|.+++..=..--+|||||.-+
T Consensus 15 ~Al~~aLk~~~fp~~~v~liTDwQd~R 41 (131)
T 1wn9_A 15 EALKAALGGLKLSEAKVYLITDWQDKR 41 (131)
T ss_dssp HHHHHHHTTCCCTTCEEEEEEECCSSG
T ss_pred HHHHHHHccCCCCCceEEEEecccccc
Confidence 578899988876655666899999643
No 7
>1wmx_A COG3291: FOG: PKD repeat; CBM30, carbohydrate binding module family30, CELJ, sugar BIN protein; 2.00A {Clostridium thermocellum} SCOP: b.18.1.24 PDB: 1wzx_A 2c24_A
Probab=17.07 E-value=32 Score=29.57 Aligned_cols=27 Identities=44% Similarity=0.864 Sum_probs=19.6
Q ss_pred cEEEEEeeccc---chhhhhhh---heeccCCC
Q psy7084 11 IRVTIMLNSFI---TDWQHVKR---NLMRPSGS 37 (326)
Q Consensus 11 ~~~~~~~~~~~---~~~~~~~~---~~~~~~~~ 37 (326)
+.+++-+|.+| |+|||||= .+|.++.-
T Consensus 117 ~~~~~~~~~yi~VttEwQHvsiPLkdFM~e~td 149 (205)
T 1wmx_A 117 IDVTTVISNYVTVTTDWQHVKIPLRDLMKINNG 149 (205)
T ss_dssp CEEEEEGGGTCCCCSSCEEEEEEGGGTSCSTTC
T ss_pred eEEEeechheEEeccccEEEEeeHHHhccccCC
Confidence 45677788886 69999986 66776433
No 8
>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Probab=12.88 E-value=69 Score=29.39 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=18.2
Q ss_pred CCCCceeEecCCCCce--Eeecccc--cCccEEEE
Q psy7084 183 EMSSGAYIFKPEVNKS--VVSKSEV--NDSTVEDV 213 (326)
Q Consensus 183 ~~~sGAYiF~P~~~~~--~~~~~~v--~Gpl~~ev 213 (326)
.+..|+|+||+..+.+ +.+. .| +|.+++.|
T Consensus 248 ~~KpGsYIfR~ScTrlGqwAIg-YV~s~g~I~qti 281 (323)
T 3op0_A 248 RDKPGSYIFRPSCTRLGQWAIG-YVSSDGSILQTI 281 (323)
T ss_dssp GGSTTEEEEEECSSSTTCEEEE-EECTTSCEEEEC
T ss_pred ccCCCcEEEEeccCccCceEEE-EEcCCCceeecC
Confidence 3568999999986542 2221 12 66666654
No 9
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=12.51 E-value=60 Score=18.17 Aligned_cols=14 Identities=43% Similarity=0.603 Sum_probs=11.4
Q ss_pred ccchhhhhhhheec
Q psy7084 20 FITDWQHVKRNLMR 33 (326)
Q Consensus 20 ~~~~~~~~~~~~~~ 33 (326)
-+||+-|-||.|+-
T Consensus 8 s~TDFYhsKRRlvf 21 (26)
T 2zvv_Y 8 SMTDFYHSKRRLIF 21 (26)
T ss_pred chhHHHhhhceEEE
Confidence 37999999998864
No 10
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=8.97 E-value=1.2e+02 Score=27.90 Aligned_cols=29 Identities=17% Similarity=0.368 Sum_probs=17.7
Q ss_pred CCCceeEecCCCCce--Eeecccc--cCccEEEE
Q psy7084 184 MSSGAYIFKPEVNKS--VVSKSEV--NDSTVEDV 213 (326)
Q Consensus 184 ~~sGAYiF~P~~~~~--~~~~~~v--~Gpl~~ev 213 (326)
+..|.|+||+.++.+ +.+. -| +|.+++.|
T Consensus 264 ~kpGsYIfR~ScTrlGqwAIg-yV~~~~~I~qti 296 (329)
T 3bux_B 264 HKPGSYIFRLSCTRLGQWAIG-YVTADGNILQTI 296 (329)
T ss_dssp TSTTEEEEEECSSSTTSEEEE-EECTTSCEEEEC
T ss_pred CCCCcEEEEeccCccCceEEE-EECCCCceeeeC
Confidence 568999999986542 2221 12 66666554
Done!