RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7084
(326 letters)
>gnl|CDD|219551 pfam07748, Glyco_hydro_38C, Glycosyl hydrolases family 38
C-terminal domain. Glycosyl hydrolases are key enzymes
of carbohydrate metabolism.
Length = 379
Score = 80.9 bits (200), Expect = 4e-17
Identities = 59/277 (21%), Positives = 86/277 (31%), Gaps = 72/277 (25%)
Query: 72 VYNALGRTVNRYVLQLAERTSQNSSAKMELVFKATLPPMGYSSFFVSTGPGKTSEVSPSH 131
V+N L V T+P VS+ ++ S
Sbjct: 5 VFNPLAWERTEVV---------------------TIP--------VSSPNVSVTDESVI- 34
Query: 132 DNFIGTSMFGLRLDKDGLVSQL--LKNNHSLP--MTQTFGYY---------VGHESDYGN 178
+ + D GL+ + +N + + F Y + DY
Sbjct: 35 ---LENGFLKVEFDPTGLLKSIYDKENGREVLAGVGNQFQLYEDKPLYWDAWDIDKDYEE 91
Query: 179 NDNGEMSSGAYIFKPEVNKSVVSKSEV---NDSTVEDVVRLLSNG---EVTTTVYKGPGK 232
SGAY+F P V + EV S + V+RL + E TTV
Sbjct: 92 KPLEVQDSGAYLFLPNGPLRAVVRVEVHQYGSSWISQVIRLYAGKPRIEFETTV--DW-- 147
Query: 233 TSEVSPSHDNFIGTSIPS-FNSQNRFYTDSNGREMIERILNYRQTWELDNQEPISSNYYP 291
P + P+ NS FY D NG + P + YY
Sbjct: 148 -----PERHKELKVRFPTDINSDKAFYEDQNGVIERKL------PTHP--NTPWEAAYYE 194
Query: 292 VTSRIAVVDD--VLQMSVLTDRAQGGTSLKKGEIELM 326
V S + D +SVL D G +SL G++EL
Sbjct: 195 VPSHRFIDDSEASYGVSVLNDSKYGVSSLADGQLELS 231
>gnl|CDD|178304 PLN02701, PLN02701, alpha-mannosidase.
Length = 1050
Score = 58.3 bits (141), Expect = 3e-09
Identities = 65/329 (19%), Positives = 117/329 (35%), Gaps = 103/329 (31%)
Query: 66 DKFAINVYNALGRTVNRYVL-QLAERTSQNSSAKMELVFKATLPPMGYSSFFVSTG---- 120
D+ A+ V+++ V + + + + + L +KA++P +G ++F++ G
Sbjct: 550 DRPAVCVFDSNWTCVPSQISPEWQHDGEKLFTGRHRLYWKASVPALGLETYFIANGNVSC 609
Query: 121 ----------------------------PGKTSEVSPSHDNFIGTSMFGLRLDKDGLVSQ 152
G T E+S SH GL L K +
Sbjct: 610 EKAVPAKLKVFNSDDKFPCPEPYSCSKLEGDTVEISNSHQTLGFDVKTGL-LRK----IK 664
Query: 153 LLKNNHSLPMTQTFGYYVGHESDYGNNDNGEMSSGAYIFKPEVN-KSVVSKSEVNDSTVE 211
+ KN + + G Y S GAY+FKP+ + +V
Sbjct: 665 IHKNGSETVVGEEIGMYSSQGS------------GAYLFKPDGEAQPIVQA--------- 703
Query: 212 DVVRLLSNGEVTTTVYKGPGKTSEVSP-SH-------DNFIGTSIPSF------------ 251
+ ++S G + V+ P E SP S +
Sbjct: 704 GGLVVVSEGPLVQEVHSVPKTKWEKSPLSRSTRLYHGGKSVQDLSVEKEYHVELLGHDFN 763
Query: 252 ------------NSQNRFYTDSNGREMIERILNYRQTWELDNQEPISSNYYPVTSRIAVV 299
+++ FY+D NG +M R+T++ + P+ NYYP+ S +A +
Sbjct: 764 DKELIVRFKTDIDNKRVFYSDLNGFQMSR-----RETYD---KIPLQGNYYPMPS-LAFL 814
Query: 300 DDVL--QMSVLTDRAQGGTSLKKGEIELM 326
+ SV + ++ G SLK G +E+M
Sbjct: 815 QGSNGQRFSVHSRQSLGVASLKNGWLEIM 843
>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH
domain; composed of proteins with similarity to human
SPOP. SPOP was isolated as a novel antigen recognized by
serum from a scleroderma patient, whose overexpression
in COS cells results in a discrete speckled pattern in
the nuclei. It contains an N-terminal MATH domain and a
C-terminal BTB (also called POZ) domain. Together with
Cul3, SPOP constitutes an ubiquitin E3 ligase which is
able to ubiquitinate the PcG protein BMI1, the variant
histone macroH2A1 and the death domain-associated
protein Daxx. Therefore, SPOP may be involved in the
regulation of these proteins and may play a role in
transcriptional regulation, apoptosis and X-chromosome
inactivation. Cul3 binds to the BTB domain of SPOP
whereas Daxx and the macroH2A1 nonhistone region have
been shown to bind to the MATH domain. Both MATH and BTB
domains are necessary for the nuclear speckled
accumulation of SPOP. There are many proteins, mostly
uncharacterized, containing both MATH and BTB domains
from C. elegans and plants which are excluded from this
family.
Length = 139
Score = 32.9 bits (75), Expect = 0.073
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 52 LYLNISSCEPSETWDKFAINVYNALGRTVNRYVLQLAERTSQ 93
LYL + SC SE KF ++ NA G Q A R Q
Sbjct: 59 LYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQ 100
>gnl|CDD|236305 PRK08582, PRK08582, hypothetical protein; Provisional.
Length = 139
Score = 30.8 bits (70), Expect = 0.44
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 23/100 (23%)
Query: 187 GAYIFKPEVNKSVVSKSEVNDSTVEDVVRLLSNG-EVTTTVYKGPGKTSEVSPSHDNFIG 245
GA++ PE +V SEV D+ V+D+ L G EV V ++ D IG
Sbjct: 20 GAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVEVKV---------LNVEDDGKIG 70
Query: 246 TSI-------------PSFNSQNRFYTDSNGREMIERILN 272
SI P D +E E+ ++
Sbjct: 71 LSIKKAKDRPKRQHDRPRHEDNRGGGNDVAPKEDFEQKMS 110
>gnl|CDD|236436 PRK09263, PRK09263, anaerobic ribonucleoside triphosphate
reductase; Provisional.
Length = 711
Score = 28.7 bits (65), Expect = 4.9
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 140 FGLRLDKDGLVSQLLKNNHSLPMTQTFGY 168
FG+RL D V +L KN + T + GY
Sbjct: 467 FGVRLKADDDVDELFKNGRA---TISLGY 492
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.129 0.367
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,777,066
Number of extensions: 1424786
Number of successful extensions: 827
Number of sequences better than 10.0: 1
Number of HSP's gapped: 822
Number of HSP's successfully gapped: 9
Length of query: 326
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 229
Effective length of database: 6,635,264
Effective search space: 1519475456
Effective search space used: 1519475456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.6 bits)