RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7084
(326 letters)
>1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
b.30.5.6
Length = 282
Score = 137 bits (345), Expect = 2e-38
Identities = 72/210 (34%), Positives = 108/210 (51%), Gaps = 22/210 (10%)
Query: 135 IGTSMFGLRLDKD-GLVSQL--LKNNHSLPMTQTFGYYVGHESDYGNNDNGEMSSGAYIF 191
I R D + GL+ +L L+ N LP+ Q F +Y + ++ +SGAYIF
Sbjct: 5 IQNEYLRARFDPNTGLLMELENLEQNLLLPVRQAFYWYNASTGNNLSSQ----ASGAYIF 60
Query: 192 KPEVNKSVVSKS----EVNDSTVEDVVRLLSNGEVT--TTVYKGPG-----KTSEVSPSH 240
+P NK + + +++ V + + +Y T P
Sbjct: 61 RPNQNKPLFVSHWAQTHLVKASLVQEVHQNFSAWCSQVVRLYPRQRHLELEWTVGPIPVG 120
Query: 241 DNFIGTSIPSF----NSQNRFYTDSNGREMIERILNYRQTWELDNQEPISSNYYPVTSRI 296
D + I F ++ FYTDSNGRE++ER NYR TW+L+ EP++ NYYPV SRI
Sbjct: 121 DGWGKEVISRFDTALATRGLFYTDSNGREILERRRNYRPTWKLNQTEPVAGNYYPVNSRI 180
Query: 297 AVVDDVLQMSVLTDRAQGGTSLKKGEIELM 326
+ D +Q++VLTDR+QGG+SL+ G +ELM
Sbjct: 181 YITDGNMQLTVLTDRSQGGSSLRDGSLELM 210
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase,
golgi apparatus, membrane, signal-anchor, transmembrane;
HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1
b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A*
3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A*
1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A*
2alw_A* 2f18_A* ...
Length = 1045
Score = 120 bits (302), Expect = 2e-30
Identities = 58/280 (20%), Positives = 104/280 (37%), Gaps = 68/280 (24%)
Query: 92 SQNSSAKMELVFKATLPPMGYSSFFVSTGPGKTSEVSPSHDNFIGTS------------- 138
Q S+ K ++FKA +PPMG +++ ++ K S + + + +
Sbjct: 609 PQGSTTKYRIIFKARVPPMGLATYVLTISDSKPEHTSYASNLLLRKNPTSLPLGQYPEDV 668
Query: 139 --------------MFGLRLDKDGLVSQ--LLKNNHSLPMTQTFGYYVGHESDYGNNDNG 182
L + GL+ L +++ +P+ F Y
Sbjct: 669 KFGDPREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKFLKYGVRSHGD------ 722
Query: 183 EMSSGAYIFKPE---------------VNKSVVSKSEVNDSTVEDVVRLLSNG-EVTTTV 226
SGAY+F P + S V +V + E+ V
Sbjct: 723 --RSGAYLFLPNGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQTIMRGGAPEIRNLV 780
Query: 227 YKGPGKTSEVSPSHDNFIGTSIPSFNSQNRFYTDSNGREMIERILNYRQTWELDNQEPIS 286
G +E+ + +S + FYTD NG + I+R + P+
Sbjct: 781 DIGSLDNTEI-------VMRLETHIDSGDIFYTDLNGLQFIKRRRLDK--------LPLQ 825
Query: 287 SNYYPVTSRIAVVDDVLQMSVLTDRAQGGTSLKKGEIELM 326
+NYYP+ S + + D ++++LT + GG+SL GE+E+M
Sbjct: 826 ANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELEIM 865
>1o7d_C Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family
38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP:
a.8.3.1 b.30.5.6
Length = 159
Score = 59.7 bits (144), Expect = 3e-11
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 17/102 (16%)
Query: 46 STVKTCLYLNISSCEPSETWDKFAINVYNALGRTVNRYV-------------LQLAERTS 92
C LNIS C ++T ++F + VYN LGR V+ V S
Sbjct: 58 EDFAFCRKLNISICPLTQTAERFQVIVYNPLGRKVDWMVRLPVSKHVYLVKDPGGKIVPS 117
Query: 93 Q----NSSAKMELVFKATLPPMGYSSFFVSTGPGKTSEVSPS 130
SS EL+F A +P +G+S + VS P + + S S
Sbjct: 118 DVVTIPSSDSQELLFSALVPAVGFSIYSVSQMPNQRPQKSWS 159
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 9e-09
Identities = 56/317 (17%), Positives = 97/317 (30%), Gaps = 111/317 (35%)
Query: 7 QLSNIRVTIMLNSFITDWQHVK-RNLMRPSGSSHGSHPVVSTVKTCLYLNISSCEPSETW 65
QL++ VT + + + R+ ++ + H V + I+ +++W
Sbjct: 245 QLAHYVVTAK----LLGFTPGELRSYLK-GATGHSQGLVTAVA-------IAE---TDSW 289
Query: 66 DKFAINVYNAL------G-RTVNRY-VLQLAERTSQNSSAKMELVFKATLP-PM----GY 112
+ F ++V A+ G R Y L ++S E +P PM
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE-----GVPSPMLSISNL 344
Query: 113 SSFFVSTGPGKTSEVSP-----------SHDNFIGTSMFGLRLDKDGLVSQLLKNN---- 157
+ V KT+ P N + + G GL L K
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS---GPPQSLYGLNLTLRKAKAPSG 401
Query: 158 -------HS----------LPMTQTFGYYVGHESDYGNNDNGEMSSGAYIFKPEVNKSVV 200
S LP+ F H S + + + ++ K+ V
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPF-----H-SHL-------LVPASDLINKDLVKNNV 448
Query: 201 SKS------------------EVNDSTVEDVVRLLSNGEV---TTTVYK-------GPGK 232
S + ++ S E +V + V TTT +K GPG
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 233 TSEVSP-SHDNFIGTSI 248
S + +H N GT +
Sbjct: 509 ASGLGVLTHRNKDGTGV 525
Score = 36.2 bits (83), Expect = 0.018
Identities = 52/322 (16%), Positives = 100/322 (31%), Gaps = 123/322 (38%)
Query: 52 LYLNISSCEPSETWDK----------FAI------N-----VYN--ALGRTVNRYVLQLA 88
LY + + + W++ F+I N ++ G+ + +
Sbjct: 1635 LYKTSKAAQ--DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 89 ERTSQNSSAKMELVFKATLPPMGYSSFFVSTGP----GKTSEVSPSHDNFIGTSMFGLRL 144
T + K E +FK +F T P+ +
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTF---RSEKGLLSATQFTQPA--------LT---- 1737
Query: 145 DKDGLVS----QLLKNNHSLPMTQTFGYYVGHESDYGNNDNGEMSSGAYIFKPEVNKS-V 199
L+ + LK+ +P TF GH S G Y + +
Sbjct: 1738 ----LMEKAAFEDLKSKGLIPADATFA---GH------------SLGEY--------AAL 1770
Query: 200 VSKSEVNDSTVEDVVRLLSN-GE-VTTTVYKGPGKTSE-----VSPSHDNFIGTSIPSFN 252
S ++V +E +V ++ G + V + S ++P G SF+
Sbjct: 1771 ASLADVMS--IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP------GRVAASFS 1822
Query: 253 SQNRFYTDSNGREMIERILNYRQTWELDNQEPISSNY------YPVTS--RIAVVDDVLQ 304
+ ++ER+ R W + E + NY Y V + A+ D +
Sbjct: 1823 -------QEALQYVVERVGK-RTGWLV---EIV--NYNVENQQY-VAAGDLRAL--DTVT 1866
Query: 305 MSVLTDRAQGGTSLKKGEIELM 326
+VL +K +I+++
Sbjct: 1867 -NVL-------NFIKLQKIDII 1880
Score = 33.9 bits (77), Expect = 0.082
Identities = 27/139 (19%), Positives = 46/139 (33%), Gaps = 32/139 (23%)
Query: 39 HGSH--PVVSTVKTCLYLNISSCEPSETWDKFAINVYNALGRTVNRYVLQLAERTSQNSS 96
H P + L N S + I VY+ T + L+ S +
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKD----IQIPVYD----TFDGSDLR-VLSGSISER 478
Query: 97 AKMELVFKATLP------PMGYSSFFVSTGPGKTSEVSP-SHDNFIGTSMFGLRLDKDGL 149
++ LP ++ + GPG S + +H N GT G+R+ +
Sbjct: 479 IVDCII---RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT---GVRV----I 528
Query: 150 VSQLLKNNHSLPMTQTFGY 168
V+ L N +G+
Sbjct: 529 VAGTLDINPDDD----YGF 543
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.55A {Enterococcus faecalis}
Length = 899
Score = 55.6 bits (133), Expect = 9e-09
Identities = 33/263 (12%), Positives = 66/263 (25%), Gaps = 45/263 (17%)
Query: 102 VFKATLPPMGYSSFFVSTGPGKTSEVSP---SHDNFIGTSMFGLRLDKDGLVSQLLKNNH 158
+ + P + SF + G K E S N + ++++ +G ++ K
Sbjct: 494 LSVKEMAPFSWDSFALIQGETKAFEGSLLAQPATNEMENEFIQVKIENNGSLTIADKKTG 553
Query: 159 SLPMTQTFGYYVGHESDY-----GNNDNGEMSSGA-----YIFKPEVNKSVVSKSEVNDS 208
G + D G + V S K V
Sbjct: 554 ETFSKLLTFEDTGDIGNEYIFFKPTEDQGITTENVTAEITNKENSPVKASYQIKQTVMLP 613
Query: 209 TVEDVVRLLSNGEVTTTVYKGPGKTSEVSPSH--------------------DN-----F 243
D V + +++ + P +N
Sbjct: 614 VAADERLEEEQKAVREFRERLAQRSTTLRPFEITTMVTMIKESNQLFFETTINNQIKDHR 673
Query: 244 IGTSIPSFNSQNRFYTDSNGREMIERILNYRQTWELDNQEPISSNYYPVTSRIAVVDDVL 303
+ P + + E++ R TWE +N + + V D
Sbjct: 674 LRVLFP-TGMVTETHEADSIYEVVTRPNQVSDTWE------NPTNPQHQQAFVNVHDQNK 726
Query: 304 QMSVLTDRAQGGTSLKKGEIELM 326
+++ + L G I +
Sbjct: 727 GVTIFNEGLNEYEVLADGTIAVT 749
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.004
Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 39/164 (23%)
Query: 173 ESDYGNNDNGEMSSGAYI----FK--PEVNKSVVSKSEVND-----STVEDVVRL----L 217
E Y D + A++ K ++ KS++SK E++ V +RL L
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 218 SNGEVTTTVYKGPGKTSEVSPSHDNFIGTSI-PSFN-SQNRFYTDSNGREMIERILN-YR 274
S E V K F+ + ++ + T+ M+ R+ R
Sbjct: 73 SKQE--EMVQK--------------FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 275 QTWELDNQEPISSNYYPVTSRIAVVDDVLQMSVLTDRAQGGTSL 318
DNQ + Y V+ R+ L+ ++L R +
Sbjct: 117 DRLYNDNQ-VFAK--YNVS-RLQPYLK-LRQALLELRPAKNVLI 155
Score = 36.4 bits (83), Expect = 0.013
Identities = 36/227 (15%), Positives = 60/227 (26%), Gaps = 70/227 (30%)
Query: 134 FIGTSMFGLRLDKDGLVSQL-LKNNHSLPMTQTFGYYVGHESDYGNNDNGEMSSGAYIFK 192
F+ LR++ L+S + + MT+ + D NDN
Sbjct: 82 FVEEV---LRINYKFLMSPIKTEQRQPSMMTRMYIEQR----DRLYNDN----------- 123
Query: 193 PEVNKSVVSKSEVNDSTVEDVVRLLSNGEVTTTVY--KGPGKTS---EVSPSHD------ 241
K VS+ + + ++ L V + G GKT +V S+
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 242 ------NFIGTSIPS--FNSQNRFYT--DSNGREMIERILNYRQTWELDNQEP---ISSN 288
N + P + D N + N + E + S
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 289 YYP-------------------------VTSRIAVVDDVLQMSVLTD 310
Y +T+R V D L + T
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Score = 32.9 bits (74), Expect = 0.18
Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 22/127 (17%)
Query: 196 NKSV---VSKSEVNDSTVEDVVRLLSNGE--------VTTTVYKGPGKTSEVSPSHDNFI 244
K V +S + +++ L+ E + P + +P + I
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 245 GTSIPSFNSQNRFYTDSNGREMIERILNYRQTWELDNQEP-ISSNYYPVTSRIAV-VDDV 302
SI + + N ++ I + L+ EP + R++V
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESS-----LNVLEPAEYRKMF---DRLSVFPPSA 385
Query: 303 -LQMSVL 308
+ +L
Sbjct: 386 HIPTILL 392
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural
genomics, phosphatase, PSI-2, protein structure
initiative; HET: MSE; 1.76A {Vibrio cholerae}
Length = 195
Score = 26.8 bits (60), Expect = 9.2
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 264 REMIERILNYRQTWE 278
RE+ + IL R +
Sbjct: 166 REVCDLILQARNELD 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.367
Gapped
Lambda K H
0.267 0.0776 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,685,983
Number of extensions: 261292
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 16
Length of query: 326
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 232
Effective length of database: 4,077,219
Effective search space: 945914808
Effective search space used: 945914808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.6 bits)