RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7084
         (326 letters)



>g1o7d.2 b.30.5.6 (C:488-585,D:603-875,E:885-1007) Lysosomal
           alpha-mannosidase {Cow (Bos taurus) [TaxId: 9913]}
          Length = 490

 Score =  164 bits (415), Expect = 2e-47
 Identities = 100/313 (31%), Positives = 147/313 (46%), Gaps = 47/313 (15%)

Query: 49  KTCLYLNISSCEPSETWDKFAINVYNALGRTVNRYV-----------------LQLAERT 91
             C  LNIS C  ++T ++F + VYN LGR V+  V                 +  ++  
Sbjct: 4   AFCRKLNISICPLTQTAERFQVIVYNPLGRKVDWMVRLPVSKHVYLVKDPGGKIVPSDVV 63

Query: 92  SQNSSAKMELVFKATLPPMGYSSFFVSTGPGKTSEVSPSHDNFIGTSMFGLRLDKDGLVS 151
           +  SS   EL+F A +P +G+S + VS  P +        D  I       R D +  + 
Sbjct: 64  TIPSSDSQELLFSALVPAVGFSIYSVSQMPNR--------DLVIQNEYLRARFDPNTGLL 115

Query: 152 QLLKN---NHSLPMTQTFGYYVGHESDYGNNDNGEMSSGAYIFKP------EVNKSVVSK 202
             L+N   N  LP+ Q F +Y    +  GNN + + S GAYIF+P       V+    + 
Sbjct: 116 MELENLEQNLLLPVRQAFYWY---NASTGNNLSSQAS-GAYIFRPNQNKPLFVSHWAQTH 171

Query: 203 SEVNDSTVEDVVRLLSNGEVTTTVYKGPG-----KTSEVSPSHDNFIGTSI----PSFNS 253
                   E      +       +Y          T    P  D +    I     +  +
Sbjct: 172 LVKASLVQEVHQNFSAWCSQVVRLYPRQRHLELEWTVGPIPVGDGWGKEVISRFDTALAT 231

Query: 254 QNRFYTDSNGREMIERILNYRQTWELDNQEPISSNYYPVTSRIAVVDDVLQMSVLTDRAQ 313
           +  FYTDSNGRE++ER  NYR TW+L+  EP++ NYYPV SRI + D  +Q++VLTDR+Q
Sbjct: 232 RGLFYTDSNGREILERRRNYRPTWKLNQTEPVAGNYYPVNSRIYITDGNMQLTVLTDRSQ 291

Query: 314 GGTSLKKGEIELM 326
           GG+SL+ G +ELM
Sbjct: 292 GGSSLRDGSLELM 304


>d3bvua2 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 522

 Score =  126 bits (317), Expect = 3e-33
 Identities = 63/300 (21%), Positives = 113/300 (37%), Gaps = 59/300 (19%)

Query: 72  VYNALGRTVNRYVLQLAERT---------SQNSSAKMELVFKATLPPMGYSSFFVSTGPG 122
           V +     V   V  +              Q S+ K  ++FKA +PPMG +++ ++    
Sbjct: 58  VTDLANNPVEAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLTISDS 117

Query: 123 KTSEVSPSHDNFIGTSMFGLRL---------------------------DKDGLVSQLLK 155
           K    S + +  +  +   L L                            + GL+  +  
Sbjct: 118 KPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSEQGLLKSIQL 177

Query: 156 NNHSLPMTQTFGYYVGHESDYGNNDNGEMSSGAYIFKPEVNKSVVSKSE----VNDSTVE 211
              S  +   F +       +G+       SGAY+F P    S V   +    V    +E
Sbjct: 178 TQDSPHVPVHFKFLKYGVRSHGD------RSGAYLFLPNGPASPVELGQPVVLVTKGKLE 231

Query: 212 DVVRLLSNGEVTTTVYKGPGKTSE----VSPSHDNFIGTSIPS-FNSQNRFYTDSNGREM 266
             V +     V  T+ +G          +    +  I   + +  +S + FYTD NG + 
Sbjct: 232 SSVSVGLPSVVHQTIMRGGAPEIRNLVDIGSLDNTEIVMRLETHIDSGDIFYTDLNGLQF 291

Query: 267 IERILNYRQTWELDNQEPISSNYYPVTSRIAVVDDVLQMSVLTDRAQGGTSLKKGEIELM 326
           I+R    +         P+ +NYYP+ S + + D   ++++LT +  GG+SL  GE+E+M
Sbjct: 292 IKRRRLDK--------LPLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELEIM 343


>d1wnaa1 d.319.1.1 (A:1-127) Hypothetical protein TTHA1528
          (TT1805) {Thermus thermophilus [TaxId: 274]}
          Length = 127

 Score = 28.8 bits (64), Expect = 0.44
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 1  MMALQEQLSNIRVTIMLNSFITDWQHVKRNLMRPSGSSH-GSHPVVS 46
          + AL+  L  ++++      ITDWQ  KR+  R +   H G   ++ 
Sbjct: 14 LEALKAALGGLKLSEAKVYLITDWQD-KRDQARYALLLHTGKKDLLV 59


>d1h97a_ a.1.1.2 (A:) Trematode hemoglobin/myoglobin {Paramphistomum
           epiclitum [TaxId: 54403]}
          Length = 147

 Score = 27.3 bits (60), Expect = 1.7
 Identities = 10/82 (12%), Positives = 21/82 (25%), Gaps = 7/82 (8%)

Query: 1   MMALQEQLSNIRVTIMLNSFITDW--QHVKRNLMRPSGSSHGSHPVVSTVKTCLYLNISS 58
             A+   L  I     +      +   H  R  +       G        +  +      
Sbjct: 71  TEAIVHMLKEISNDAEVKKIAAQYGKDHTSRK-VTKDEFMSGEPIFTKYFQNLV----KD 125

Query: 59  CEPSETWDKFAINVYNALGRTV 80
            E     +KF  +V+  +   +
Sbjct: 126 AEGKAAVEKFLKHVFPMMAAEI 147


>d1spgb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Fish (Leiostomus
           xanthurus) [TaxId: 59837]}
          Length = 147

 Score = 25.8 bits (56), Expect = 4.9
 Identities = 11/38 (28%), Positives = 15/38 (39%)

Query: 41  SHPVVSTVKTCLYLNISSCEPSETWDKFAINVYNALGR 78
              +   V      +  + E  E W KF   V +ALGR
Sbjct: 107 GEIITMCVGAKFGPSAFTPEIHEAWQKFLAVVVSALGR 144


>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
           {Baltic cod (Gadus callarias) [TaxId: 8053]}
          Length = 503

 Score = 26.2 bits (57), Expect = 7.0
 Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 81  NRYVLQLAERTSQNSSAKMELVFKATLPPMGYSSFFVSTGPGKTSEVSPSHDNFIGTSMF 140
           N  V + +  T        E+  +A +P        V  G  +T  +   H N    S  
Sbjct: 184 NAVVFKPSPMTPVTGVILAEIFHEAGVPV---GLVNVVQGGAETGSLLCHHPNVAKVSFT 240

Query: 141 G 141
           G
Sbjct: 241 G 241


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.129    0.367 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,135,572
Number of extensions: 49868
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 7
Length of query: 326
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 240
Effective length of database: 1,226,816
Effective search space: 294435840
Effective search space used: 294435840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.7 bits)