BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7086
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JNM|A Chain A, Crystal Structure Of The JunCRE COMPLEX
pdb|1JNM|B Chain B, Crystal Structure Of The JunCRE COMPLEX
pdb|2H7H|A Chain A, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|2H7H|B Chain B, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 51/62 (82%)
Query: 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357
K ERKR RNR+AASK RKRKLERIA LEE+VK LK +N+ELAS A+ L++QV LK++VM
Sbjct: 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60
Query: 358 EH 359
H
Sbjct: 61 NH 62
>pdb|1T2K|C Chain C, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 62
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 297 IKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356
+K ERKR RNR+AASK RKRKLERIA LEE+VK LK +N+ELAS A+ L++QV LK++V
Sbjct: 1 MKAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 60
Query: 357 M 357
M
Sbjct: 61 M 61
>pdb|1A02|J Chain J, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
Bound To Dna
Length = 56
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 46/56 (82%)
Query: 297 IKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSL 352
+K ERKR RNR+AASK RKRKLERIA LEE+VK LK +N+ELAS A+ L++QV L
Sbjct: 1 MKAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 56
>pdb|1S9K|E Chain E, Crystal Structure Of Human Nfat1 And Fos-Jun On The Il-2
Arre1 Site
Length = 52
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 44/52 (84%)
Query: 301 RKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSL 352
RKR RNR+AASKCRKRKLERIA LEE+VK LK +N+ELAS A+ L++QV L
Sbjct: 1 RKRMRNRIAASKCRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 52
>pdb|1JUN|A Chain A, Nmr Study Of C-Jun Homodimer
pdb|1JUN|B Chain B, Nmr Study Of C-Jun Homodimer
Length = 44
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357
RIA LEE+VK LK +N+ELAS A+ L++QV LK++VM
Sbjct: 5 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 42
>pdb|1YSA|C Chain C, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
Of Uninterrupted Alpha Helices: Crystal Structure Of The
Protein-Dna Complex
pdb|1YSA|D Chain D, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
Of Uninterrupted Alpha Helices: Crystal Structure Of The
Protein-Dna Complex
Length = 58
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 302 KRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQV 349
KR RN AA + R RKL+R+ LE++V+ L +N L + ++LK+ V
Sbjct: 8 KRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 55
>pdb|2DGC|A Chain A, Gcn4 Basic Domain, Leucine Zipper Complexed With AtfCREB
Site Dna
Length = 63
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 302 KRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQV 349
KR RN AA + R RKL+R+ LE++V+ L +N L + ++LK+ V
Sbjct: 13 KRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60
>pdb|1DGC|A Chain A, The X-Ray Structure Of The Gcn4-Bzip Bound To AtfCREB SITE
Dna Shows The Complex Depends On Dna Flexibility
Length = 62
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 302 KRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQV 349
KR RN AA + R RKL+R+ LE++V+ L +N L + ++LK+ V
Sbjct: 12 KRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 59
>pdb|2LZ1|A Chain A, Solution Nmr Structure Of The Dna-Binding Domain Of Human
Nf-E2- Related Factor 2, Northeast Structural Genomics
Consortium (Nesg) Target Hr3520o
Length = 90
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 301 RKRQRNRVAASKCRKRKLERIA 322
R+R +N+VAA CRKRKLE I
Sbjct: 69 RRRGKNKVAAQNCRKRKLENIV 90
>pdb|1LD4|E Chain E, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|F Chain F, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|G Chain G, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|H Chain H, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|I Chain I, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|J Chain J, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|K Chain K, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|L Chain L, Placement Of The Structural Proteins In Sindbis Virus
Length = 57
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 302 KRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQV 349
KR RN AA + R RKL+R+ LE++V+ L +N L + ++LK+ V
Sbjct: 7 KRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 54
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 37 LNKLNFTTPEIEKFIMQNVSSNQTPTPTQVLFSTNIMEEQELMAKSFQDT-YNELKNTQV 95
LN + TP+ +K ++ N+ P P Q+L + NI +Q SF D Y++L ++
Sbjct: 96 LNSIIEQTPQDKKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKI 155
Query: 96 LFSTNIMEEQELMAKS 111
I E +++ S
Sbjct: 156 ELIKTIPELSKIIGLS 171
>pdb|1T2K|D Chain D, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 61
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 304 QRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357
+RNR AAS+ R+++ + +LE++ + L N +L S + L+ +V LK+ ++
Sbjct: 7 ERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60
>pdb|2KZ5|A Chain A, Solution Nmr Structure Of Transcription Factor Nf-E2
Subunit's Dna Binding Domain From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr4653b
Length = 91
Score = 28.1 bits (61), Expect = 9.4, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 301 RKRQRNRVAASKCRKRKLERI 321
R+R +N+VAA RKRKLE I
Sbjct: 69 RRRGKNKVAAQNYRKRKLETI 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.123 0.328
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,010,885
Number of Sequences: 62578
Number of extensions: 375647
Number of successful extensions: 909
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 876
Number of HSP's gapped (non-prelim): 50
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)