Query psy7086
Match_columns 376
No_of_seqs 240 out of 926
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 17:44:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0837|consensus 100.0 1.6E-44 3.5E-49 342.8 17.0 215 138-369 11-277 (279)
2 PF03957 Jun: Jun-like transcr 100.0 4.9E-30 1.1E-34 242.7 0.0 112 28-140 65-179 (237)
3 PF03957 Jun: Jun-like transcr 99.9 2.6E-29 5.7E-34 237.7 0.1 106 151-265 26-134 (237)
4 KOG0837|consensus 99.6 1.6E-16 3.4E-21 152.3 4.6 71 26-97 51-123 (279)
5 smart00338 BRLZ basic region l 99.4 2.2E-12 4.8E-17 99.2 9.4 61 297-357 4-64 (65)
6 PF00170 bZIP_1: bZIP transcri 99.4 3.1E-12 6.8E-17 98.2 9.2 61 296-356 3-63 (64)
7 KOG3584|consensus 99.0 4.9E-10 1.1E-14 109.7 7.5 65 287-351 280-344 (348)
8 PF07716 bZIP_2: Basic region 99.0 2.2E-09 4.8E-14 80.4 8.5 47 302-348 8-54 (54)
9 KOG4571|consensus 98.8 2.7E-08 5.8E-13 97.4 9.2 63 298-360 227-289 (294)
10 KOG4005|consensus 98.6 3.5E-07 7.5E-12 88.0 9.9 51 298-348 69-119 (292)
11 KOG3119|consensus 98.4 1E-06 2.2E-11 85.3 9.7 74 286-362 185-258 (269)
12 PF03131 bZIP_Maf: bZIP Maf tr 98.4 4.4E-09 9.6E-14 86.5 -7.3 65 290-354 22-86 (92)
13 KOG3863|consensus 98.3 9.7E-07 2.1E-11 93.7 6.5 66 292-357 484-549 (604)
14 KOG0709|consensus 98.3 1.1E-06 2.4E-11 90.8 6.5 71 285-355 238-308 (472)
15 KOG4343|consensus 98.0 4.1E-05 8.9E-10 80.6 10.1 65 289-354 273-337 (655)
16 KOG1414|consensus 97.3 3.5E-05 7.5E-10 78.3 -1.7 70 290-361 279-349 (395)
17 KOG4196|consensus 97.0 0.0075 1.6E-07 53.8 9.9 73 290-362 45-117 (135)
18 KOG1414|consensus 96.9 8E-05 1.7E-09 75.7 -3.4 70 297-367 153-226 (395)
19 PF06005 DUF904: Protein of un 89.5 1.3 2.7E-05 35.8 6.2 38 318-355 17-54 (72)
20 PF08172 CASP_C: CASP C termin 86.4 2.3 5E-05 41.4 7.1 42 315-356 89-130 (248)
21 PF02183 HALZ: Homeobox associ 84.6 3.5 7.5E-05 30.5 5.6 34 323-356 9-42 (45)
22 TIGR02449 conserved hypothetic 80.2 7.3 0.00016 31.1 6.3 39 319-357 7-45 (65)
23 PRK00888 ftsB cell division pr 79.7 4.2 9.2E-05 34.7 5.2 39 317-355 32-70 (105)
24 PRK15422 septal ring assembly 78.4 7.3 0.00016 32.4 6.0 39 318-356 17-62 (79)
25 PRK10884 SH3 domain-containing 78.1 25 0.00053 33.5 10.4 35 321-355 127-161 (206)
26 PF08232 Striatin: Striatin fa 77.9 19 0.00041 32.0 9.0 60 299-358 12-71 (134)
27 PF05377 FlaC_arch: Flagella a 77.9 7.6 0.00017 30.2 5.6 35 321-355 2-36 (55)
28 PF06005 DUF904: Protein of un 76.6 12 0.00026 30.2 6.7 39 319-357 25-63 (72)
29 PRK00888 ftsB cell division pr 76.3 9.9 0.00021 32.5 6.5 35 320-354 28-62 (105)
30 PF02183 HALZ: Homeobox associ 76.2 9.2 0.0002 28.3 5.5 36 323-358 2-37 (45)
31 PF06156 DUF972: Protein of un 72.9 9.4 0.0002 32.9 5.6 36 319-354 22-57 (107)
32 PF11932 DUF3450: Protein of u 71.4 47 0.001 31.7 10.5 49 312-360 49-97 (251)
33 PF08826 DMPK_coil: DMPK coile 71.2 39 0.00084 26.7 8.2 36 319-354 25-60 (61)
34 COG2433 Uncharacterized conser 69.6 12 0.00027 41.1 6.8 37 320-356 423-459 (652)
35 KOG4797|consensus 68.9 23 0.00049 31.4 7.0 51 319-369 67-119 (123)
36 PF09726 Macoilin: Transmembra 68.8 24 0.00051 39.4 8.9 39 313-355 543-581 (697)
37 PF04977 DivIC: Septum formati 68.5 19 0.00041 27.7 6.0 32 316-347 21-52 (80)
38 PRK14127 cell division protein 68.4 17 0.00036 31.8 6.1 43 319-361 30-72 (109)
39 PRK13169 DNA replication intia 68.1 14 0.0003 32.3 5.6 34 319-352 22-55 (110)
40 KOG0996|consensus 67.9 1.1E+02 0.0023 36.6 13.8 142 216-360 674-847 (1293)
41 PF08317 Spc7: Spc7 kinetochor 67.8 50 0.0011 33.0 10.2 57 304-360 214-271 (325)
42 PLN02320 seryl-tRNA synthetase 67.5 15 0.00033 39.5 6.9 65 302-366 113-177 (502)
43 PF10205 KLRAQ: Predicted coil 67.2 54 0.0012 28.5 8.9 52 303-354 23-75 (102)
44 PRK00295 hypothetical protein; 67.1 24 0.00052 28.0 6.3 40 319-358 5-51 (68)
45 PF04102 SlyX: SlyX; InterPro 67.1 28 0.0006 27.5 6.7 36 319-354 4-39 (69)
46 PF12709 Kinetocho_Slk19: Cent 67.0 41 0.00088 28.5 7.9 48 306-353 34-83 (87)
47 PF06156 DUF972: Protein of un 67.0 22 0.00047 30.7 6.5 41 319-359 15-55 (107)
48 PRK13922 rod shape-determining 66.9 18 0.00039 34.8 6.8 41 318-358 68-111 (276)
49 PRK10884 SH3 domain-containing 66.5 48 0.001 31.6 9.3 37 319-355 132-168 (206)
50 PF05266 DUF724: Protein of un 65.4 40 0.00087 31.7 8.5 9 244-252 40-48 (190)
51 PF04728 LPP: Lipoprotein leuc 65.3 30 0.00066 27.1 6.4 38 319-356 3-40 (56)
52 PF01166 TSC22: TSC-22/dip/bun 65.0 11 0.00024 29.8 4.0 31 326-356 14-44 (59)
53 PF02403 Seryl_tRNA_N: Seryl-t 64.8 18 0.00039 30.0 5.5 51 302-352 49-100 (108)
54 PRK04325 hypothetical protein; 64.4 28 0.00061 28.1 6.3 40 319-358 9-55 (74)
55 PF04977 DivIC: Septum formati 64.4 20 0.00043 27.6 5.4 34 319-352 17-50 (80)
56 TIGR00414 serS seryl-tRNA synt 64.2 19 0.00042 37.3 6.8 65 302-366 50-116 (418)
57 PRK00736 hypothetical protein; 64.1 30 0.00064 27.5 6.3 42 319-360 5-53 (68)
58 PRK02793 phi X174 lysis protei 63.6 30 0.00065 27.8 6.3 40 319-358 8-54 (72)
59 PRK02119 hypothetical protein; 63.4 33 0.00072 27.6 6.6 40 319-358 9-55 (73)
60 PF05266 DUF724: Protein of un 63.3 75 0.0016 30.0 9.9 42 318-359 130-178 (190)
61 PF03980 Nnf1: Nnf1 ; InterPr 62.8 21 0.00045 30.0 5.6 34 315-348 76-109 (109)
62 PRK04863 mukB cell division pr 62.7 25 0.00055 42.4 8.1 75 288-368 1049-1123(1486)
63 KOG3119|consensus 62.7 41 0.00088 33.1 8.4 82 283-364 185-267 (269)
64 KOG4196|consensus 62.2 46 0.00099 30.3 7.8 40 320-360 69-108 (135)
65 PRK04406 hypothetical protein; 61.7 33 0.00072 27.8 6.3 41 319-359 11-58 (75)
66 PF15556 Zwint: ZW10 interacto 61.2 90 0.0019 30.6 10.1 53 303-355 111-170 (252)
67 TIGR02449 conserved hypothetic 61.0 30 0.00064 27.8 5.8 34 321-354 2-35 (65)
68 PF13851 GAS: Growth-arrest sp 60.7 1.1E+02 0.0023 29.0 10.4 54 304-357 78-131 (201)
69 KOG2391|consensus 60.3 33 0.00072 35.5 7.4 43 313-355 219-261 (365)
70 PF01166 TSC22: TSC-22/dip/bun 59.8 14 0.00029 29.3 3.6 29 319-347 14-42 (59)
71 PLN02678 seryl-tRNA synthetase 59.5 29 0.00063 36.7 7.2 65 302-366 53-118 (448)
72 PF10186 Atg14: UV radiation r 59.5 1E+02 0.0022 29.1 10.2 11 233-243 10-20 (302)
73 PF13815 Dzip-like_N: Iguana/D 59.4 42 0.00091 28.8 7.0 42 315-356 76-117 (118)
74 PF07407 Seadorna_VP6: Seadorn 58.7 14 0.00031 38.1 4.6 25 322-346 35-59 (420)
75 PRK13729 conjugal transfer pil 58.6 49 0.0011 35.6 8.6 38 320-357 84-121 (475)
76 PF08172 CASP_C: CASP C termin 58.5 41 0.00089 32.9 7.5 48 298-346 87-134 (248)
77 PRK13169 DNA replication intia 58.3 39 0.00084 29.5 6.6 40 319-358 15-54 (110)
78 TIGR02894 DNA_bind_RsfA transc 58.2 61 0.0013 30.3 8.1 48 311-358 103-150 (161)
79 PRK05431 seryl-tRNA synthetase 57.9 31 0.00068 35.9 7.0 65 302-366 48-113 (425)
80 KOG3335|consensus 56.2 25 0.00054 33.3 5.4 40 314-353 101-140 (181)
81 PF10224 DUF2205: Predicted co 56.1 62 0.0014 26.8 7.1 37 320-356 24-60 (80)
82 PF05377 FlaC_arch: Flagella a 56.0 40 0.00086 26.3 5.6 37 319-355 7-43 (55)
83 PF11559 ADIP: Afadin- and alp 55.0 65 0.0014 28.4 7.6 20 319-338 66-85 (151)
84 PRK00846 hypothetical protein; 54.7 51 0.0011 27.2 6.3 42 319-360 13-61 (77)
85 PHA03162 hypothetical protein; 54.0 21 0.00045 32.4 4.3 27 336-362 16-42 (135)
86 PF01920 Prefoldin_2: Prefoldi 52.8 70 0.0015 25.8 7.0 42 319-360 62-103 (106)
87 PF04849 HAP1_N: HAP1 N-termin 52.8 18 0.00039 36.7 4.1 38 319-356 160-197 (306)
88 PF12709 Kinetocho_Slk19: Cent 52.4 55 0.0012 27.7 6.3 41 312-352 35-75 (87)
89 COG1382 GimC Prefoldin, chaper 52.3 65 0.0014 28.7 7.0 46 315-360 66-111 (119)
90 PF05529 Bap31: B-cell recepto 52.1 87 0.0019 28.7 8.2 9 252-260 62-70 (192)
91 PF15058 Speriolin_N: Sperioli 51.9 37 0.00081 32.6 5.8 39 322-361 8-46 (200)
92 TIGR02209 ftsL_broad cell divi 51.7 38 0.00082 26.7 5.1 32 316-347 28-59 (85)
93 COG2919 Septum formation initi 51.2 46 0.00099 28.8 5.9 26 323-348 61-86 (117)
94 cd00632 Prefoldin_beta Prefold 50.2 75 0.0016 26.5 6.9 39 319-357 63-101 (105)
95 PF04156 IncA: IncA protein; 50.1 1.9E+02 0.0042 26.0 10.2 42 312-353 123-164 (191)
96 KOG1319|consensus 50.0 2.5E+02 0.0055 27.3 11.3 25 299-323 55-79 (229)
97 KOG4797|consensus 49.8 50 0.0011 29.3 5.9 36 320-355 61-96 (123)
98 PF04880 NUDE_C: NUDE protein, 49.7 24 0.00053 32.8 4.2 22 335-356 26-47 (166)
99 COG3074 Uncharacterized protei 49.7 55 0.0012 27.0 5.7 38 318-355 17-61 (79)
100 PHA03155 hypothetical protein; 49.7 26 0.00057 31.0 4.2 31 336-366 11-41 (115)
101 PF00170 bZIP_1: bZIP transcri 49.3 1.2E+02 0.0025 23.2 7.7 31 319-349 33-63 (64)
102 PF10473 CENP-F_leu_zip: Leuci 49.2 1.3E+02 0.0028 27.3 8.7 56 304-359 37-92 (140)
103 smart00338 BRLZ basic region l 49.1 1.2E+02 0.0025 23.1 7.5 32 326-357 26-57 (65)
104 PF10805 DUF2730: Protein of u 48.6 77 0.0017 26.9 6.8 40 317-356 47-88 (106)
105 PF04880 NUDE_C: NUDE protein, 48.5 15 0.00033 34.2 2.7 31 326-357 24-54 (166)
106 TIGR02894 DNA_bind_RsfA transc 48.5 62 0.0013 30.2 6.6 34 322-355 100-133 (161)
107 PTZ00454 26S protease regulato 48.4 60 0.0013 33.6 7.2 40 323-362 26-65 (398)
108 TIGR02209 ftsL_broad cell divi 47.9 52 0.0011 25.9 5.4 35 320-354 25-59 (85)
109 PF11559 ADIP: Afadin- and alp 47.8 1.9E+02 0.0042 25.3 10.1 34 324-357 92-125 (151)
110 PF05700 BCAS2: Breast carcino 47.7 2.2E+02 0.0048 27.0 10.4 39 320-358 176-214 (221)
111 KOG1853|consensus 47.5 55 0.0012 33.0 6.5 52 307-358 33-84 (333)
112 PF07407 Seadorna_VP6: Seadorn 47.4 40 0.00088 35.0 5.7 34 327-360 33-67 (420)
113 PF10805 DUF2730: Protein of u 47.1 1.2E+02 0.0026 25.8 7.7 27 319-345 35-61 (106)
114 PF11382 DUF3186: Protein of u 46.9 44 0.00095 33.4 5.8 42 319-360 32-73 (308)
115 PF07716 bZIP_2: Basic region 46.8 59 0.0013 24.2 5.2 31 324-354 23-53 (54)
116 PF12329 TMF_DNA_bd: TATA elem 46.4 1.2E+02 0.0027 24.3 7.3 42 318-359 32-73 (74)
117 PF07989 Microtub_assoc: Micro 46.1 52 0.0011 26.7 5.1 36 325-360 35-70 (75)
118 PF15456 Uds1: Up-regulated Du 46.0 86 0.0019 27.8 6.9 43 319-361 74-116 (124)
119 PF15556 Zwint: ZW10 interacto 45.8 1.6E+02 0.0036 28.9 9.2 63 298-360 113-182 (252)
120 KOG1318|consensus 45.6 1.9E+02 0.0041 30.8 10.3 29 332-360 296-324 (411)
121 PRK10803 tol-pal system protei 45.0 55 0.0012 31.9 6.1 32 322-353 57-88 (263)
122 PF12718 Tropomyosin_1: Tropom 44.9 71 0.0015 28.6 6.3 39 320-358 29-67 (143)
123 PF13863 DUF4200: Domain of un 44.6 1.9E+02 0.0041 24.3 9.8 38 309-346 71-108 (126)
124 PF14077 WD40_alt: Alternative 44.3 23 0.00049 27.0 2.5 21 319-339 18-38 (48)
125 PF12808 Mto2_bdg: Micro-tubul 43.4 73 0.0016 24.6 5.2 23 324-346 27-49 (52)
126 PF09744 Jnk-SapK_ap_N: JNK_SA 43.0 1.9E+02 0.0041 26.6 8.9 35 324-358 80-114 (158)
127 PF07334 IFP_35_N: Interferon- 43.0 46 0.00099 27.5 4.4 28 328-355 2-29 (76)
128 PF10224 DUF2205: Predicted co 43.0 1.9E+02 0.0042 24.0 8.0 36 319-354 30-65 (80)
129 TIGR00219 mreC rod shape-deter 42.9 65 0.0014 31.8 6.3 36 323-358 70-109 (283)
130 COG2919 Septum formation initi 42.2 59 0.0013 28.1 5.2 37 319-355 50-86 (117)
131 PRK00295 hypothetical protein; 42.2 1.2E+02 0.0027 24.0 6.6 35 319-353 19-53 (68)
132 PF05103 DivIVA: DivIVA protei 41.5 16 0.00034 30.9 1.6 36 319-354 25-60 (131)
133 PF04728 LPP: Lipoprotein leuc 41.5 89 0.0019 24.5 5.5 36 321-356 12-47 (56)
134 PF12718 Tropomyosin_1: Tropom 41.2 2.7E+02 0.0058 25.0 9.6 12 321-332 37-48 (143)
135 PF11598 COMP: Cartilage oligo 41.1 1.3E+02 0.0029 22.5 6.2 40 323-362 5-44 (45)
136 PF10146 zf-C4H2: Zinc finger- 40.9 87 0.0019 30.4 6.6 42 319-360 60-101 (230)
137 PF08317 Spc7: Spc7 kinetochor 40.1 1.6E+02 0.0035 29.4 8.6 23 201-223 65-87 (325)
138 PF12999 PRKCSH-like: Glucosid 40.1 1.1E+02 0.0024 28.9 6.9 31 317-347 144-174 (176)
139 PF12711 Kinesin-relat_1: Kine 39.9 29 0.00063 29.2 2.9 17 340-356 51-67 (86)
140 PF11932 DUF3450: Protein of u 39.8 1.6E+02 0.0034 28.2 8.2 19 321-339 79-97 (251)
141 PF08537 NBP1: Fungal Nap bind 39.8 2E+02 0.0044 29.6 9.3 58 299-356 123-205 (323)
142 KOG0977|consensus 39.3 1.7E+02 0.0036 32.2 9.0 35 321-355 150-184 (546)
143 PF01486 K-box: K-box region; 39.2 77 0.0017 26.2 5.3 35 308-342 60-98 (100)
144 COG3883 Uncharacterized protei 38.9 1.1E+02 0.0023 30.7 7.0 45 314-358 54-98 (265)
145 PF07106 TBPIP: Tat binding pr 38.9 52 0.0011 29.5 4.6 39 320-358 94-134 (169)
146 PF05812 Herpes_BLRF2: Herpesv 38.5 52 0.0011 29.3 4.3 26 336-361 6-31 (118)
147 PF13600 DUF4140: N-terminal d 38.2 89 0.0019 25.7 5.5 33 320-352 71-103 (104)
148 PF03962 Mnd1: Mnd1 family; I 38.1 3.3E+02 0.0071 25.5 9.8 46 313-358 104-153 (188)
149 PF07106 TBPIP: Tat binding pr 38.0 2.3E+02 0.005 25.4 8.5 27 321-347 111-137 (169)
150 PRK04406 hypothetical protein; 37.8 1.5E+02 0.0032 24.1 6.6 29 323-351 8-36 (75)
151 PRK02793 phi X174 lysis protei 37.6 1.5E+02 0.0033 23.7 6.6 34 320-353 23-56 (72)
152 PF07047 OPA3: Optic atrophy 3 37.5 69 0.0015 28.3 5.0 22 323-344 109-130 (134)
153 PF10211 Ax_dynein_light: Axon 37.5 2.4E+02 0.0052 26.3 8.8 17 244-260 60-76 (189)
154 TIGR02338 gimC_beta prefoldin, 37.4 99 0.0022 26.1 5.8 30 321-350 76-105 (110)
155 cd00890 Prefoldin Prefoldin is 37.4 1.3E+02 0.0029 25.0 6.6 33 323-355 91-123 (129)
156 PRK02119 hypothetical protein; 37.3 1.6E+02 0.0034 23.8 6.6 33 320-352 24-56 (73)
157 PRK00736 hypothetical protein; 37.2 1.6E+02 0.0035 23.3 6.6 35 319-353 19-53 (68)
158 COG1382 GimC Prefoldin, chaper 37.2 97 0.0021 27.6 5.8 35 318-352 76-110 (119)
159 smart00787 Spc7 Spc7 kinetocho 37.1 1.4E+02 0.003 30.3 7.6 45 316-360 222-266 (312)
160 PF13851 GAS: Growth-arrest sp 36.9 1.1E+02 0.0024 28.8 6.6 32 327-358 49-80 (201)
161 PF04102 SlyX: SlyX; InterPro 36.9 1.2E+02 0.0027 23.8 5.8 39 320-358 12-50 (69)
162 PRK13922 rod shape-determining 36.6 2E+02 0.0044 27.6 8.4 28 327-354 70-97 (276)
163 KOG4005|consensus 36.5 1.3E+02 0.0028 30.2 7.0 44 312-355 89-147 (292)
164 PHA02109 hypothetical protein 36.4 82 0.0018 30.3 5.5 33 317-349 191-223 (233)
165 PF11500 Cut12: Spindle pole b 36.0 3.2E+02 0.007 25.3 9.1 53 299-351 85-137 (152)
166 PRK09413 IS2 repressor TnpA; R 36.0 81 0.0018 26.9 5.1 24 332-355 77-100 (121)
167 PTZ00454 26S protease regulato 36.0 1.4E+02 0.0031 30.9 7.7 37 319-355 29-65 (398)
168 PF04420 CHD5: CHD5-like prote 35.8 1.7E+02 0.0036 26.6 7.3 7 303-309 54-60 (161)
169 PF08781 DP: Transcription fac 35.6 1.3E+02 0.0029 27.4 6.6 40 295-340 4-46 (142)
170 TIGR03752 conj_TIGR03752 integ 35.6 81 0.0018 34.0 6.0 31 326-356 109-139 (472)
171 PRK11546 zraP zinc resistance 35.5 2.7E+02 0.0059 25.5 8.5 13 284-296 39-51 (143)
172 KOG0250|consensus 35.3 2.3E+02 0.0051 33.5 9.8 20 309-328 369-388 (1074)
173 COG4026 Uncharacterized protei 35.2 3.3E+02 0.0071 27.3 9.5 44 315-358 159-202 (290)
174 PF12329 TMF_DNA_bd: TATA elem 35.2 1.7E+02 0.0037 23.5 6.5 29 319-347 12-40 (74)
175 KOG1962|consensus 35.0 98 0.0021 30.1 5.9 43 316-358 169-211 (216)
176 TIGR02338 gimC_beta prefoldin, 34.8 1.8E+02 0.0039 24.6 6.9 41 318-358 66-106 (110)
177 PF05529 Bap31: B-cell recepto 34.6 2.6E+02 0.0055 25.6 8.4 11 326-336 161-171 (192)
178 PF12808 Mto2_bdg: Micro-tubul 34.5 55 0.0012 25.2 3.4 41 317-357 2-46 (52)
179 PRK03992 proteasome-activating 34.4 1.4E+02 0.0029 30.6 7.2 40 321-360 10-49 (389)
180 PRK04325 hypothetical protein; 34.0 1.9E+02 0.0041 23.3 6.6 33 320-352 24-56 (74)
181 KOG0982|consensus 33.9 2.3E+02 0.005 30.6 8.8 35 318-352 296-330 (502)
182 KOG4343|consensus 33.8 1.1E+02 0.0024 33.7 6.7 35 318-352 308-342 (655)
183 PF02090 SPAM: Salmonella surf 33.6 1.7E+02 0.0038 27.0 6.9 44 325-368 22-65 (147)
184 PRK09343 prefoldin subunit bet 33.4 1.7E+02 0.0037 25.4 6.7 39 319-360 78-116 (121)
185 PF15397 DUF4618: Domain of un 33.2 1.7E+02 0.0037 29.2 7.4 50 300-349 181-230 (258)
186 cd00632 Prefoldin_beta Prefold 33.2 1.3E+02 0.0028 25.1 5.8 34 319-352 70-103 (105)
187 COG2433 Uncharacterized conser 32.8 3.5E+02 0.0077 30.4 10.3 47 320-366 475-522 (652)
188 KOG0994|consensus 32.8 2.3E+02 0.005 34.3 9.2 44 315-358 1706-1749(1758)
189 COG3074 Uncharacterized protei 32.8 1.4E+02 0.0029 24.8 5.5 25 327-351 40-64 (79)
190 PRK15422 septal ring assembly 32.4 2E+02 0.0043 24.1 6.5 34 321-354 6-39 (79)
191 KOG2483|consensus 32.2 1E+02 0.0023 30.1 5.7 39 315-353 101-139 (232)
192 cd00890 Prefoldin Prefoldin is 32.0 1.3E+02 0.0029 25.0 5.7 34 319-352 94-127 (129)
193 KOG0946|consensus 31.9 3.6E+02 0.0078 31.4 10.3 43 313-355 665-707 (970)
194 cd07429 Cby_like Chibby, a nuc 31.9 1.2E+02 0.0026 26.6 5.4 25 327-351 80-104 (108)
195 PRK03947 prefoldin subunit alp 31.9 1.8E+02 0.0038 25.3 6.6 32 322-353 104-135 (140)
196 TIGR03752 conj_TIGR03752 integ 31.8 1.3E+02 0.0028 32.5 6.7 26 333-358 109-134 (472)
197 PF10211 Ax_dynein_light: Axon 31.7 2.6E+02 0.0056 26.2 8.0 19 320-338 128-146 (189)
198 PF07926 TPR_MLP1_2: TPR/MLP1/ 31.6 2.8E+02 0.0061 24.1 7.8 17 334-350 106-122 (132)
199 PF14389 Lzipper-MIP1: Leucine 31.6 2.7E+02 0.0058 23.1 7.3 21 337-357 58-78 (88)
200 PRK09039 hypothetical protein; 31.3 3.7E+02 0.008 27.4 9.7 35 321-355 118-152 (343)
201 PF14775 NYD-SP28_assoc: Sperm 30.7 1.5E+02 0.0033 23.0 5.4 27 332-358 32-58 (60)
202 PF10883 DUF2681: Protein of u 30.7 1.3E+02 0.0029 25.3 5.3 26 324-349 28-53 (87)
203 PF13863 DUF4200: Domain of un 30.5 3.1E+02 0.0068 23.0 7.7 34 320-353 75-108 (126)
204 PRK09413 IS2 repressor TnpA; R 30.4 1.5E+02 0.0032 25.3 5.8 33 321-353 73-105 (121)
205 PF07028 DUF1319: Protein of u 30.4 3.9E+02 0.0084 24.2 8.5 47 314-360 41-87 (126)
206 PF05565 Sipho_Gp157: Siphovir 30.4 1.6E+02 0.0034 26.8 6.2 41 319-359 47-87 (162)
207 KOG1760|consensus 30.2 1.5E+02 0.0033 26.9 5.8 40 321-360 83-122 (131)
208 TIGR00293 prefoldin, archaeal 30.2 2E+02 0.0044 24.3 6.6 32 324-355 91-122 (126)
209 PF04201 TPD52: Tumour protein 29.9 83 0.0018 29.4 4.3 41 320-360 37-82 (162)
210 PF09457 RBD-FIP: FIP domain ; 29.8 2.3E+02 0.005 21.4 5.9 39 322-360 3-41 (48)
211 PF12325 TMF_TATA_bd: TATA ele 29.7 1.8E+02 0.0038 25.7 6.2 23 321-343 32-54 (120)
212 PF10779 XhlA: Haemolysin XhlA 29.5 2.8E+02 0.0061 21.8 7.0 32 324-355 18-49 (71)
213 PRK11239 hypothetical protein; 29.2 88 0.0019 30.5 4.6 28 321-348 185-212 (215)
214 PF04156 IncA: IncA protein; 29.1 4.3E+02 0.0093 23.8 10.4 52 309-360 134-185 (191)
215 COG2900 SlyX Uncharacterized p 29.1 2.4E+02 0.0052 23.3 6.3 19 339-357 35-53 (72)
216 PF08614 ATG16: Autophagy prot 29.0 3.6E+02 0.0078 24.9 8.5 40 320-359 145-184 (194)
217 PRK00846 hypothetical protein; 28.9 2.6E+02 0.0057 23.1 6.7 47 307-353 14-61 (77)
218 PF09744 Jnk-SapK_ap_N: JNK_SA 28.7 3.2E+02 0.0069 25.2 7.9 25 214-243 10-34 (158)
219 KOG0243|consensus 28.7 2.9E+02 0.0063 32.7 9.2 47 314-360 443-496 (1041)
220 PF04999 FtsL: Cell division p 28.7 1.4E+02 0.003 24.3 5.1 27 321-347 44-70 (97)
221 PRK10803 tol-pal system protei 28.6 1.3E+02 0.0027 29.5 5.6 41 318-358 60-100 (263)
222 cd07655 F-BAR_PACSIN The F-BAR 28.5 4.8E+02 0.01 25.2 9.5 72 293-364 167-239 (258)
223 COG1842 PspA Phage shock prote 28.3 1.9E+02 0.0042 28.0 6.7 37 320-356 93-129 (225)
224 PF04999 FtsL: Cell division p 28.3 1.8E+02 0.004 23.6 5.8 34 321-354 37-70 (97)
225 PRK14872 rod shape-determining 28.2 2.1E+02 0.0044 29.6 7.2 24 328-351 59-82 (337)
226 PF10046 BLOC1_2: Biogenesis o 28.1 3.6E+02 0.0078 22.5 8.0 50 306-356 30-82 (99)
227 PF04899 MbeD_MobD: MbeD/MobD 28.0 2.5E+02 0.0054 22.8 6.3 37 321-357 30-66 (70)
228 KOG0250|consensus 27.9 3.8E+02 0.0082 31.9 9.9 34 322-355 397-430 (1074)
229 PF08286 Spc24: Spc24 subunit 27.8 20 0.00043 30.8 0.0 26 321-346 15-40 (118)
230 PRK05431 seryl-tRNA synthetase 27.7 5.2E+02 0.011 27.1 10.2 33 328-360 68-100 (425)
231 PHA03065 Hypothetical protein; 27.6 2.1E+02 0.0045 30.7 7.2 42 307-348 89-137 (438)
232 PRK01156 chromosome segregatio 27.5 1.8E+02 0.0039 32.6 7.3 36 322-357 412-447 (895)
233 PHA02562 46 endonuclease subun 27.5 4.1E+02 0.0088 27.8 9.5 8 325-332 364-371 (562)
234 PRK11637 AmiB activator; Provi 27.5 5.8E+02 0.013 26.3 10.5 40 315-354 215-254 (428)
235 COG5019 CDC3 Septin family pro 27.4 3.8E+02 0.0082 28.2 9.0 55 304-358 313-367 (373)
236 PF07227 DUF1423: Protein of u 27.3 1.2E+02 0.0026 32.5 5.5 47 312-358 343-389 (446)
237 PF09340 NuA4: Histone acetylt 27.2 2E+02 0.0043 23.6 5.7 37 327-363 3-40 (80)
238 PF14282 FlxA: FlxA-like prote 27.2 1.9E+02 0.0041 24.6 5.8 20 336-355 54-73 (106)
239 KOG3856|consensus 26.9 1.8E+02 0.0038 26.5 5.7 42 320-361 11-52 (135)
240 KOG4370|consensus 26.8 1.6E+02 0.0035 31.7 6.3 40 319-358 413-452 (514)
241 PRK13729 conjugal transfer pil 26.6 1.6E+02 0.0034 31.9 6.3 30 326-355 97-126 (475)
242 PF15290 Syntaphilin: Golgi-lo 26.6 1.7E+02 0.0038 29.8 6.2 39 318-356 74-133 (305)
243 COG4942 Membrane-bound metallo 26.5 5.5E+02 0.012 27.5 10.1 14 321-334 68-81 (420)
244 COG3937 Uncharacterized conser 26.3 2.3E+02 0.005 25.0 6.2 24 334-357 84-107 (108)
245 PF07798 DUF1640: Protein of u 26.2 3.3E+02 0.0072 24.8 7.6 11 250-260 22-32 (177)
246 PHA03158 hypothetical protein; 26.1 64 0.0014 31.4 3.1 25 308-333 244-268 (273)
247 PF06216 RTBV_P46: Rice tungro 26.0 2.4E+02 0.0052 28.7 7.0 39 319-357 78-116 (389)
248 TIGR01242 26Sp45 26S proteasom 25.9 1.7E+02 0.0037 29.2 6.2 36 319-354 6-41 (364)
249 PLN02678 seryl-tRNA synthetase 25.8 5.5E+02 0.012 27.4 10.1 63 298-360 37-105 (448)
250 PRK02224 chromosome segregatio 25.8 5.1E+02 0.011 28.9 10.3 28 336-366 429-456 (880)
251 cd07429 Cby_like Chibby, a nuc 25.7 1.8E+02 0.0038 25.6 5.4 30 329-358 75-104 (108)
252 KOG4010|consensus 25.7 99 0.0021 29.8 4.1 25 332-356 43-67 (208)
253 TIGR02231 conserved hypothetic 25.6 5.7E+02 0.012 27.0 10.3 34 326-359 138-171 (525)
254 PRK14127 cell division protein 25.5 1.6E+02 0.0034 25.8 5.0 34 320-353 38-71 (109)
255 PF02996 Prefoldin: Prefoldin 25.5 1.7E+02 0.0037 24.2 5.2 32 321-352 86-117 (120)
256 PRK00247 putative inner membra 25.5 5E+02 0.011 27.7 9.7 13 80-92 64-76 (429)
257 PF14662 CCDC155: Coiled-coil 25.4 2.5E+02 0.0054 27.1 6.7 37 319-355 22-58 (193)
258 KOG4657|consensus 25.3 2.3E+02 0.005 28.1 6.6 48 313-360 80-127 (246)
259 PF13805 Pil1: Eisosome compon 25.2 2.3E+02 0.0049 28.5 6.8 45 304-348 150-194 (271)
260 PF06632 XRCC4: DNA double-str 25.2 2.3E+02 0.005 29.2 7.0 18 241-258 52-69 (342)
261 PRK09343 prefoldin subunit bet 25.2 3E+02 0.0064 23.9 6.8 41 320-360 72-112 (121)
262 smart00340 HALZ homeobox assoc 25.1 1.4E+02 0.003 22.5 3.9 28 328-355 7-34 (44)
263 PF05278 PEARLI-4: Arabidopsis 25.1 7.2E+02 0.016 25.1 10.6 30 336-367 238-267 (269)
264 PF03961 DUF342: Protein of un 25.1 4.9E+02 0.011 27.1 9.5 36 324-359 373-408 (451)
265 KOG1318|consensus 24.6 98 0.0021 32.8 4.3 45 316-360 287-331 (411)
266 COG4026 Uncharacterized protei 24.5 2.5E+02 0.0053 28.1 6.7 14 246-259 72-85 (290)
267 PF03670 UPF0184: Uncharacteri 24.2 2.9E+02 0.0063 23.3 6.2 42 319-360 33-74 (83)
268 PF11461 RILP: Rab interacting 23.9 1.4E+02 0.003 23.7 4.0 35 327-361 4-38 (60)
269 PF07558 Shugoshin_N: Shugoshi 23.8 94 0.002 23.0 2.9 23 320-342 22-44 (46)
270 PF04599 Pox_G5: Poxvirus G5 p 23.8 2.5E+02 0.0054 30.0 7.0 84 240-346 42-133 (425)
271 PF09738 DUF2051: Double stran 23.7 2.6E+02 0.0056 28.4 6.9 33 328-360 142-174 (302)
272 PF09726 Macoilin: Transmembra 23.6 4.7E+02 0.01 29.5 9.5 38 319-356 538-575 (697)
273 PRK06835 DNA replication prote 23.3 3.1E+02 0.0067 27.8 7.4 53 300-352 14-84 (329)
274 COG3096 MukB Uncharacterized p 23.3 4E+02 0.0087 31.2 8.7 75 290-370 1050-1124(1480)
275 PF14257 DUF4349: Domain of un 23.2 3.1E+02 0.0067 26.2 7.1 27 330-356 166-192 (262)
276 PF08961 DUF1875: Domain of un 23.0 28 0.0006 34.2 0.0 34 319-352 129-162 (243)
277 PRK12704 phosphodiesterase; Pr 22.9 7.1E+02 0.015 27.0 10.4 7 305-311 81-87 (520)
278 smart00340 HALZ homeobox assoc 22.9 2.3E+02 0.005 21.3 4.7 24 324-347 10-33 (44)
279 smart00787 Spc7 Spc7 kinetocho 22.9 7.9E+02 0.017 24.9 10.2 20 204-223 63-82 (312)
280 PF11690 DUF3287: Protein of u 22.7 3.5E+02 0.0075 23.9 6.6 36 318-353 41-78 (109)
281 COG0172 SerS Seryl-tRNA synthe 22.5 2E+02 0.0043 30.7 6.1 55 302-356 49-105 (429)
282 PRK11239 hypothetical protein; 22.5 1.4E+02 0.003 29.1 4.6 30 326-355 183-212 (215)
283 PHA01750 hypothetical protein 22.4 3.9E+02 0.0084 22.0 6.3 34 324-357 40-73 (75)
284 PF06295 DUF1043: Protein of u 22.4 55 0.0012 28.7 1.7 6 356-361 69-74 (128)
285 PRK09039 hypothetical protein; 22.3 4.5E+02 0.0098 26.7 8.4 40 302-347 140-179 (343)
286 PF12999 PRKCSH-like: Glucosid 22.3 4E+02 0.0086 25.2 7.4 30 325-354 145-174 (176)
287 cd07672 F-BAR_PSTPIP2 The F-BA 22.2 7.2E+02 0.016 24.0 10.5 68 294-361 154-222 (240)
288 PF03962 Mnd1: Mnd1 family; I 22.1 6.5E+02 0.014 23.5 10.3 27 334-360 104-130 (188)
289 PF02996 Prefoldin: Prefoldin 22.1 2.9E+02 0.0064 22.8 6.0 25 321-345 93-117 (120)
290 PF07889 DUF1664: Protein of u 22.0 5.6E+02 0.012 22.9 8.0 38 319-356 68-105 (126)
291 PHA02109 hypothetical protein 22.0 1.8E+02 0.0039 28.0 5.1 25 334-358 194-218 (233)
292 PRK03947 prefoldin subunit alp 22.0 3E+02 0.0066 23.8 6.3 7 254-260 44-50 (140)
293 PF04949 Transcrip_act: Transc 21.9 2.5E+02 0.0055 26.2 5.9 49 312-360 49-97 (159)
294 PRK15396 murein lipoprotein; P 21.9 3.2E+02 0.007 22.6 6.0 35 320-354 26-60 (78)
295 PF14584 DUF4446: Protein of u 21.9 6.1E+02 0.013 23.2 8.4 36 323-358 43-78 (151)
296 PF04201 TPD52: Tumour protein 21.8 2.8E+02 0.006 26.0 6.2 6 290-295 25-30 (162)
297 PF07558 Shugoshin_N: Shugoshi 21.8 1E+02 0.0023 22.8 2.8 30 327-356 15-44 (46)
298 PF06103 DUF948: Bacterial pro 21.8 2E+02 0.0043 23.1 4.8 33 319-351 33-65 (90)
299 PF07767 Nop53: Nop53 (60S rib 21.7 4.7E+02 0.01 26.7 8.5 28 228-256 179-206 (387)
300 cd00584 Prefoldin_alpha Prefol 21.7 2.6E+02 0.0057 23.7 5.8 35 318-352 93-127 (129)
301 PF13815 Dzip-like_N: Iguana/D 21.7 3E+02 0.0065 23.6 6.1 27 322-348 90-116 (118)
302 PF10226 DUF2216: Uncharacteri 21.6 5.8E+02 0.013 24.7 8.4 55 303-357 85-139 (195)
303 TIGR00219 mreC rod shape-deter 21.4 3.3E+02 0.0071 27.0 7.1 14 327-340 92-105 (283)
304 PF09766 FimP: Fms-interacting 21.3 3.3E+02 0.0071 27.9 7.2 42 314-355 103-144 (355)
305 PF10234 Cluap1: Clusterin-ass 21.2 2.3E+02 0.005 28.4 5.9 48 315-362 200-247 (267)
306 KOG0483|consensus 21.2 1.5E+02 0.0033 28.4 4.5 38 320-357 106-143 (198)
307 COG3883 Uncharacterized protei 21.2 2.7E+02 0.0059 27.9 6.4 33 310-342 64-96 (265)
308 PF11853 DUF3373: Protein of u 21.2 92 0.002 33.7 3.4 23 320-342 32-54 (489)
309 PRK10722 hypothetical protein; 21.1 3.3E+02 0.0071 27.2 6.8 48 308-357 160-207 (247)
310 PF14645 Chibby: Chibby family 20.9 2.4E+02 0.0052 24.7 5.4 17 329-345 81-97 (116)
311 PF03904 DUF334: Domain of unk 20.8 6.7E+02 0.015 24.8 8.8 51 307-357 81-137 (230)
312 PF08581 Tup_N: Tup N-terminal 20.2 4.2E+02 0.0092 21.8 6.4 38 319-359 39-76 (79)
313 PF07200 Mod_r: Modifier of ru 20.2 2.7E+02 0.0058 24.3 5.6 31 325-355 54-84 (150)
314 PF04012 PspA_IM30: PspA/IM30 20.0 3.7E+02 0.0079 24.9 6.8 32 322-353 101-132 (221)
No 1
>KOG0837|consensus
Probab=100.00 E-value=1.6e-44 Score=342.85 Aligned_cols=215 Identities=41% Similarity=0.564 Sum_probs=194.8
Q ss_pred CccccccccCCCCCCcccccccccccccccCCCCCCCccCCcccCCCCcCCCCCCCccCCCCcccCCCcCCcccCChhhh
Q psy7086 138 NDTFDMTRCSSNSSSATYTTLDSNLKLEFQPGMDNSNSQGNKNAKKPRLRLPNHPMLNLNIPVLSSPDLNKLNFTTPEIE 217 (376)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~k~lK~~mtLnl~~~~~~s~~~~~~~~~K~~l~~~~~~~~~~~~~~L~SpDl~~LKLaSPELE 217 (376)
+..+++|++.++. .+.++.+|.+|+|+|.++ + . ..|++ ..+.+.+++.++|++.|||+|||||
T Consensus 11 ~~~~~~gssg~~~-~~~p~~~k~~~~l~l~dp----~--~---t~kp~-------~~a~~~~~~~~~D~~~l~l~speLe 73 (279)
T KOG0837|consen 11 LSSPLDGSSGTGE-VSAPKTLKPSMGLNLADP----F--I---TLKPP-------PAAKNFDFFAPQDLGTLKLASPELE 73 (279)
T ss_pred ccccCCCCCCCcc-cccccccccccccccccc----c--c---ccCCC-------CcCCCcCcccCccccccccCcHHHH
Confidence 4556888888866 999999999999999998 5 3 55554 2356779999999999999999999
Q ss_pred HHHHhcCCC-CCCCCCcceeccchhhHHHHHHHHHHHHHHHhhhcCCCC---------------------C---------
Q psy7086 218 KFIMQNVSS-NQTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKNNTSD---------------------S--------- 266 (376)
Q Consensus 218 rliiq~~G~-ttTPTPsq~~~p~~vt~eqe~~a~gfv~al~~l~~~~~~---------------------~--------- 266 (376)
|+|+++||. ++||||++|+||++||+||+.|+.|||.|++++|.+|.. +
T Consensus 74 ~aiv~sn~~~tttptp~q~~ypk~vt~e~~~fd~gf~~al~dlH~~n~~~~stee~~~~~stg~~~y~p~sv~~~~~~s~ 153 (279)
T KOG0837|consen 74 RAIVRSNGYATTTPTPMQYRYPKNVTEEQYFFDPGFVMALDDLHPGNYRYFSTEECQPVHSTGIVGYSPTSVDQEAILSI 153 (279)
T ss_pred HHHhhccceeeecCCCccccCCCcccchhhhcccchhHhHhhcCccccccccccccccccccCccCcCCccchhhhhhhc
Confidence 999999999 999999999999999999999999999999999999932 0
Q ss_pred -----C-------------Cc-ccccCCCCCCCC--CCCCCCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy7086 267 -----S-------------SM-LIKDEPAHSIAS--TSPPMSPIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLE 325 (376)
Q Consensus 267 -----~-------------~~-~ikeEPq~vp~~--~spp~sPiD~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE 325 (376)
+ +. ..++||++++.. .++|.+||||+.||++|.+|+|.|||+||.|||+||.++|++||
T Consensus 154 ~gk~~~~~~a~~~~~~g~~r~e~~~~e~~~v~e~~~~~~pispid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLE 233 (279)
T KOG0837|consen 154 GGKEGSRFAAKKSREVGMTRKELEKDEPQTVAEIPELKEPISPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLE 233 (279)
T ss_pred cCCCCceeccccccccccchHHHhhccchhhccCcccCCCCCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 0 11 567899999984 58999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccc
Q psy7086 326 ERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQINVV 369 (376)
Q Consensus 326 ~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l~~~ 369 (376)
++|+.++.+|.+|..++..|+++|.++|+.|++|.++||+++..
T Consensus 234 dkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~ngc~~ll~ 277 (279)
T KOG0837|consen 234 DKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIHNGCQLLLE 277 (279)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999999999999864
No 2
>PF03957 Jun: Jun-like transcription factor; InterPro: IPR005643 The c-Jun NH(2)-terminal kinase (JNK) is a member of an evolutionarily conserved sub-family of mitogen-activated protein (MAP) kinases [, ].; PDB: 3U86_B.
Probab=99.95 E-value=4.9e-30 Score=242.67 Aligned_cols=112 Identities=29% Similarity=0.410 Sum_probs=0.0
Q ss_pred CCCcccCCCCCCcccCChhhHHHHHhcCCC-cccCCCccccccCcchHHHHHHHhHHHHHHHHHhhhccccCcchhHH--
Q psy7086 28 NIPVLSSPDLNKLNFTTPEIEKFIMQNVSS-NQTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKNTQVLFSTNIMEE-- 104 (376)
Q Consensus 28 ~~~~l~Spdl~~LklaSPeLEkliiq~~~~-~~tptp~~~~~p~~vt~eQe~fa~gFv~al~~lh~~~~~~~~~~~~~-- 104 (376)
.++||+||||+||||+||||||||||++.. ++||||++|+||+.||+|||+||+|||+||++||+++++.+.+...-
T Consensus 65 ~~~ll~SpDl~~LklaSPeLErlIiqsng~v~~TPtp~~~~~pk~vT~EQE~fA~GFv~AL~~Lh~~~~~~~~~~~~~~~ 144 (237)
T PF03957_consen 65 FAPLLSSPDLGLLKLASPELERLIIQSNGLVTTTPTPGQFLYPKNVTEEQEGFAEGFVKALADLHKQNQLPSPTNASQPA 144 (237)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCcccccccccCHhHHHHHHhccCccccCCCCCceecCccccHHHHHHHHHHHHHHHHHHhccCCCCCccccccc
Confidence 457899999999999999999999998433 58999999999999999999999999999999999999887632220
Q ss_pred HHHHhhhhhhhhhhhccCCccchhcccccccCCCcc
Q psy7086 105 QELMAKSFQDTYNELKNTSDSSIQSKLLKSENSNDT 140 (376)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (376)
.-.++-. .-+.-...+..+.+++++.|+|+||+.|
T Consensus 145 s~~~~pt-~s~~a~~~~~~~~~~~s~~PvYtnLssy 179 (237)
T PF03957_consen 145 SSSTGPT-VSSSAGYNNSYSSGVSSEPPVYTNLSSY 179 (237)
T ss_dssp ------------------------------------
T ss_pred ccccCcc-ccccccccccccccccCCCccccccccc
Confidence 0011000 0000011234456778899999999999
No 3
>PF03957 Jun: Jun-like transcription factor; InterPro: IPR005643 The c-Jun NH(2)-terminal kinase (JNK) is a member of an evolutionarily conserved sub-family of mitogen-activated protein (MAP) kinases [, ].; PDB: 3U86_B.
Probab=99.95 E-value=2.6e-29 Score=237.71 Aligned_cols=106 Identities=32% Similarity=0.494 Sum_probs=0.4
Q ss_pred CCcccccccccccccccCCCCCCCccCCcccCCCCcCCCC--CCCccCCCCcccCCCcCCcccCChhhhHHHHhcCCC-C
Q psy7086 151 SSATYTTLDSNLKLEFQPGMDNSNSQGNKNAKKPRLRLPN--HPMLNLNIPVLSSPDLNKLNFTTPEIEKFIMQNVSS-N 227 (376)
Q Consensus 151 ~~~~~k~lK~~mtLnl~~~~~~s~~~~~~~~~K~~l~~~~--~~~~~~~~~~L~SpDl~~LKLaSPELErliiq~~G~-t 227 (376)
...+++.+|+.|+|||.++ + + .+|++++..+ ........++|+||||+||||+||||||||||+||+ +
T Consensus 26 ~~~~~~~~k~~~~ln~~~~----~--~---~lkp~~~~~~~~~~~~~~~~~ll~SpDl~~LklaSPeLErlIiqsng~v~ 96 (237)
T PF03957_consen 26 GYNNPKMLKQSMTLNLSDP----S--S---NLKPGLRLNPQSAKNKSIFAPLLSSPDLGLLKLASPELERLIIQSNGLVT 96 (237)
T ss_dssp S-------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccc----c--c---ccCcccccCcccccccccccccccCcccccccccCHhHHHHHHhccCccc
Confidence 4456899999999999987 3 2 4556555111 111123568899999999999999999999999998 8
Q ss_pred CCCCCcceeccchhhHHHHHHHHHHHHHHHhhhcCCCC
Q psy7086 228 QTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKNNTSD 265 (376)
Q Consensus 228 tTPTPsq~~~p~~vt~eqe~~a~gfv~al~~l~~~~~~ 265 (376)
+||||++|||||.||+|||+||+|||+||++||++++.
T Consensus 97 ~TPtp~~~~~pk~vT~EQE~fA~GFv~AL~~Lh~~~~~ 134 (237)
T PF03957_consen 97 TTPTPGQFLYPKNVTEEQEGFAEGFVKALADLHKQNQL 134 (237)
T ss_dssp --------------------------------------
T ss_pred cCCCCCceecCccccHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999854
No 4
>KOG0837|consensus
Probab=99.63 E-value=1.6e-16 Score=152.31 Aligned_cols=71 Identities=27% Similarity=0.495 Sum_probs=65.4
Q ss_pred CCCCCcccCCCCCCcccCChhhHHHHHhcCCC--cccCCCccccccCcchHHHHHHHhHHHHHHHHHhhhcccc
Q psy7086 26 NLNIPVLSSPDLNKLNFTTPEIEKFIMQNVSS--NQTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKNTQVLF 97 (376)
Q Consensus 26 ~~~~~~l~Spdl~~LklaSPeLEkliiq~~~~--~~tptp~~~~~p~~vt~eQe~fa~gFv~al~~lh~~~~~~ 97 (376)
+.+..++.++|++.|||+|||||++|+++ +| +|||||++|+||++||+||+.|+.|||+||++||.+|...
T Consensus 51 a~~~~~~~~~D~~~l~l~speLe~aiv~s-n~~~tttptp~q~~ypk~vt~e~~~fd~gf~~al~dlH~~n~~~ 123 (279)
T KOG0837|consen 51 AKNFDFFAPQDLGTLKLASPELERAIVRS-NGYATTTPTPMQYRYPKNVTEEQYFFDPGFVMALDDLHPGNYRY 123 (279)
T ss_pred CCCcCcccCccccccccCcHHHHHHHhhc-cceeeecCCCccccCCCcccchhhhcccchhHhHhhcCcccccc
Confidence 44668999999999999999999999998 55 6899999999999999999999999999999999998643
No 5
>smart00338 BRLZ basic region leucin zipper.
Probab=99.39 E-value=2.2e-12 Score=99.21 Aligned_cols=61 Identities=36% Similarity=0.533 Sum_probs=58.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 297 IKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 297 iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
.|+++|++|||+||++||.||+.++..||.++..|+.+|.+|..++..|+.++..|++++.
T Consensus 4 ~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 4 EKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3678899999999999999999999999999999999999999999999999999999874
No 6
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.37 E-value=3.1e-12 Score=98.24 Aligned_cols=61 Identities=44% Similarity=0.580 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 296 RIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 296 ~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
..+++++++|||+||.+||.||+.++..||.++..|+.+|..|..++..|..++..|+..+
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3578899999999999999999999999999999999999999999999999999999876
No 7
>KOG3584|consensus
Probab=99.03 E-value=4.9e-10 Score=109.65 Aligned_cols=65 Identities=34% Similarity=0.501 Sum_probs=57.5
Q ss_pred CCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 287 SPIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCS 351 (376)
Q Consensus 287 sPiD~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~ 351 (376)
+|...+++.-.|||-|+++||+||+.||+||||+++.||.+|..||.+|..|-+|++.|++-.++
T Consensus 280 sp~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~ 344 (348)
T KOG3584|consen 280 SPTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH 344 (348)
T ss_pred CCCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 56666666667999999999999999999999999999999999999999999888888876543
No 8
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.00 E-value=2.2e-09 Score=80.36 Aligned_cols=47 Identities=38% Similarity=0.586 Sum_probs=43.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 302 KRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQ 348 (376)
Q Consensus 302 RReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreE 348 (376)
+|.|||+||.+||.||++++..|+.++..|+.+|..|..++..|+.|
T Consensus 8 rR~rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 8 RRERNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34499999999999999999999999999999999999999998865
No 9
>KOG4571|consensus
Probab=98.77 E-value=2.7e-08 Score=97.43 Aligned_cols=63 Identities=33% Similarity=0.466 Sum_probs=59.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 298 KreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
+..|+|+.|++||.|+|+|||...+.|+.+.+.|+.+|.+|+.++..|..||.+||+.|++-.
T Consensus 227 ~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 227 KLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788999999999999999999999999999999999999999999999999999998643
No 10
>KOG4005|consensus
Probab=98.56 E-value=3.5e-07 Score=88.02 Aligned_cols=51 Identities=35% Similarity=0.517 Sum_probs=46.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQ 348 (376)
Q Consensus 298 KreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreE 348 (376)
|..||+.+|||||+-.|.|||++++++|.++++|+.+|..|..+...||+.
T Consensus 69 K~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 69 KVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999999888877766654
No 11
>KOG3119|consensus
Probab=98.43 E-value=1e-06 Score=85.33 Aligned_cols=74 Identities=24% Similarity=0.434 Sum_probs=66.2
Q ss_pred CCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy7086 286 MSPIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHN 362 (376)
Q Consensus 286 ~sPiD~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~ 362 (376)
.+|+|+.+.+. +.||+||-+||+|||.++|.+..++..++..|+.||..|+.+|..|+.|+..|++.+..+...
T Consensus 185 ~~~~~~~~~~y---~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~ 258 (269)
T KOG3119|consen 185 SSPVEKKDPEY---KERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKP 258 (269)
T ss_pred CCchhcCCHHH---HHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 35777766664 568899999999999999999999999999999999999999999999999999999886643
No 12
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.36 E-value=4.4e-09 Score=86.53 Aligned_cols=65 Identities=38% Similarity=0.544 Sum_probs=53.5
Q ss_pred CcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 290 DMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 290 D~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
..++...+|..||+.+||.||..||.||++.+..|+.++..|..+...|..++..++.++..+|+
T Consensus 22 t~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~ 86 (92)
T PF03131_consen 22 TEEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKR 86 (92)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778999999999999999999999999999999999888777777777777666554443
No 13
>KOG3863|consensus
Probab=98.30 E-value=9.7e-07 Score=93.67 Aligned_cols=66 Identities=38% Similarity=0.551 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 292 ESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 292 eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+.-+.|+..|||-+|||||++||+||.+.|..||.+|..|.++.+.|..+...+..++..+|++|.
T Consensus 484 ~QLslIrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls 549 (604)
T KOG3863|consen 484 EQLSLIRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLS 549 (604)
T ss_pred HHHHHhhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344668888999999999999999999999999999999999999998887776666666666544
No 14
>KOG0709|consensus
Probab=98.29 E-value=1.1e-06 Score=90.77 Aligned_cols=71 Identities=31% Similarity=0.407 Sum_probs=61.9
Q ss_pred CCCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 285 PMSPIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 285 p~sPiD~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
..-|.-..|++..|+.||+.||+..|+.+|+|||++|+.||.+|.....+|.+|..+|..|..+...|-++
T Consensus 238 s~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~q 308 (472)
T KOG0709|consen 238 SKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQ 308 (472)
T ss_pred ccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHH
Confidence 34577888888889999999999999999999999999999999999999999999999887764444444
No 15
>KOG4343|consensus
Probab=97.95 E-value=4.1e-05 Score=80.61 Aligned_cols=65 Identities=29% Similarity=0.413 Sum_probs=57.6
Q ss_pred CCcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 289 IDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 289 iD~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
+.+|.+- -|++.|.-|||..|..+|+||||++..||.++..|..||+.|+.|...|++++..|-.
T Consensus 273 ~~~d~kv-~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 273 VGSDIKV-LKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred CccCHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 5566665 4777899999999999999999999999999999999999999999999998887644
No 16
>KOG1414|consensus
Probab=97.28 E-value=3.5e-05 Score=78.32 Aligned_cols=70 Identities=33% Similarity=0.508 Sum_probs=60.9
Q ss_pred CcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcC
Q psy7086 290 DMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELA-SVASKLKQQVCSLKEQVMEHVH 361 (376)
Q Consensus 290 D~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~-~ei~~LreEv~~LKq~Ll~H~~ 361 (376)
+.+..++ +.|-.+|||+||.|||+||+.|+..|+.+...+..+|..|. .++..|+.++.++..-+.-|..
T Consensus 279 ~~~p~~~--~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~~~~~~~~~~~~ 349 (395)
T KOG1414|consen 279 DEDPDER--RRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVKQLSQALLTHKD 349 (395)
T ss_pred CCCchhh--hhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHhhhccccccccc
Confidence 4455554 36778999999999999999999999999999999999999 8889999999999887777664
No 17
>KOG4196|consensus
Probab=96.95 E-value=0.0075 Score=53.81 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=62.4
Q ss_pred CcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy7086 290 DMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHN 362 (376)
Q Consensus 290 D~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~ 362 (376)
+-|+--++|..||-.+||==|.-||-|+...-.+||.+-..|..+...|+.+++.++.|+..||.....-.+.
T Consensus 45 ~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 45 SREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344446788888899999999999999999999999999999999999999999999999999887655543
No 18
>KOG1414|consensus
Probab=96.89 E-value=8e-05 Score=75.71 Aligned_cols=70 Identities=34% Similarity=0.476 Sum_probs=64.7
Q ss_pred HHHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q psy7086 297 IKIERKRQRNRVAASK---CRKRKLERIANLEERVKILK-GENNELASVASKLKQQVCSLKEQVMEHVHNGCQIN 367 (376)
Q Consensus 297 iKreRRReRNRvAAsK---CRqRKKe~I~~LE~kvk~Le-~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l~ 367 (376)
.|+.+||+||++||.+ ||.|+++....|+.+|+.|+ .++..|..++..|..+...|...+.-|.. .|...
T Consensus 153 ~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l~~h~~-~~~~~ 226 (395)
T KOG1414|consen 153 EKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKELNTHRP-PCSGN 226 (395)
T ss_pred HHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHHhccCC-CcccC
Confidence 4688899999999999 99999999999999999999 99999999999999999999999999985 35543
No 19
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=89.52 E-value=1.3 Score=35.80 Aligned_cols=38 Identities=37% Similarity=0.413 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
.+.|..|+.+++.|+.+|..|..+...|+++..+|++.
T Consensus 17 veti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 17 VETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888888888888754
No 20
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=86.38 E-value=2.3 Score=41.45 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 315 KRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 315 qRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
.|-+.+..+||+++..+..+...|+.+++.|+.....|-..+
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455678888888888899999999998888888876664
No 21
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.61 E-value=3.5 Score=30.55 Aligned_cols=34 Identities=32% Similarity=0.423 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 323 NLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 323 ~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
.|...++.|+.++..|..+...|+.|+..|+..+
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666667777777777777777766655
No 22
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=80.19 E-value=7.3 Score=31.15 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
++|+.|-..+..|+.+|..|+.++..+..|...|+....
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888999999999999999998888887654
No 23
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=79.73 E-value=4.2 Score=34.69 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 317 KLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 317 KKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
.++++..++.+.+.++.+|.+|+.++..|+..-..+...
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~ 70 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER 70 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 345566666666666666666666666666533333333
No 24
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=78.44 E-value=7.3 Score=32.37 Aligned_cols=39 Identities=31% Similarity=0.417 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASK-------LKQQVCSLKEQV 356 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~-------LreEv~~LKq~L 356 (376)
.+.|.=|+.++++|+.+|..|..++.. |.++..+||+..
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 477888999999999999998888766 777777777653
No 25
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.11 E-value=25 Score=33.53 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
++..+..+.+|+.+|.+|+.++..++.++..|+.+
T Consensus 127 ~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 127 VAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555544444443
No 26
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=77.93 E-value=19 Score=32.00 Aligned_cols=60 Identities=17% Similarity=0.066 Sum_probs=53.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 299 IERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 299 reRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
.+.+-+|.|.++.==|.==+.+|..||.+.+.++.-+.+|...|.-|+-.+.+.+..+..
T Consensus 12 Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 12 EWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356788999999988888899999999999999999999999999999888888877654
No 27
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=77.92 E-value=7.6 Score=30.23 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
+.+||.++..++....-++.+++.+++++..+++-
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544444444444444444444444443
No 28
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=76.57 E-value=12 Score=30.22 Aligned_cols=39 Identities=31% Similarity=0.347 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
..+++|..+...|..+|.+|..++..|+++-..++..|.
T Consensus 25 ~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 25 MENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788778888888888888888777766665543
No 29
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=76.27 E-value=9.9 Score=32.46 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
...+++.++..++.+|.+|+.+...|++|+..|++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 57789999999999999999999999999999976
No 30
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.17 E-value=9.2 Score=28.31 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 323 NLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 323 ~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
.||...+.|+.....|+.+...|..|+..|+.+|..
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777877888888888888888877777754
No 31
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=72.95 E-value=9.4 Score=32.94 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
+.+..|...+..|..||..|+.+...||+.+..+.+
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555666666666666666666655555543
No 32
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=71.38 E-value=47 Score=31.75 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 312 KCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 312 KCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
.-++.-.+++..|+.+++.|+..|..|...+..++.++..|+..+....
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666778888888888888888888888888888888887766543
No 33
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=71.24 E-value=39 Score=26.71 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
.---.++.++++-+.+|.+|..+|..|+.++..++.
T Consensus 25 ~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 25 SANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445567888889999999999999999999988764
No 34
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.63 E-value=12 Score=41.09 Aligned_cols=37 Identities=38% Similarity=0.539 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
.+..++.+++.|+.+|.+|..++..|+.++..|+..|
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l 459 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESEL 459 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555444444444444444443
No 35
>KOG4797|consensus
Probab=68.91 E-value=23 Score=31.40 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcCCCCccccc
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQ--VCSLKEQVMEHVHNGCQINVV 369 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreE--v~~LKq~Ll~H~~~gC~l~~~ 369 (376)
|.++-|.+++.+|+.+|..|+.|...|+.- -.+|++.-..-....|+-.+.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~~~~~~q~~~~~p~ 119 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQLPAQLSPQLCPESPQ 119 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhcccccCCCCCC
Confidence 666666667777777777776666666543 233444433333445665443
No 36
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=68.82 E-value=24 Score=39.39 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 313 CRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 313 CRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
||+|+ .+||.+++.|..+....++++..|+.++..|+..
T Consensus 543 ~r~r~----~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 543 CRQRR----RQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555 4455555666665555556666666666555554
No 37
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=68.52 E-value=19 Score=27.67 Aligned_cols=32 Identities=34% Similarity=0.466 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 316 RKLERIANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 316 RKKe~I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
..+..+.+|+.+++.++.+|.+|..++..|+.
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456777777888888888887777777733
No 38
>PRK14127 cell division protein GpsB; Provisional
Probab=68.41 E-value=17 Score=31.75 Aligned_cols=43 Identities=23% Similarity=0.250 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVH 361 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~ 361 (376)
++++.+.+.++.|..+|.+|+.++..|++++..++..+..+..
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~ 72 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGAS 72 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 5677788888888899999999999999999999998887653
No 39
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=68.07 E-value=14 Score=32.28 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
+.+..|...+..|..||..|+.+...||+.+..+
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666667777777777777777666665
No 40
>KOG0996|consensus
Probab=67.91 E-value=1.1e+02 Score=36.63 Aligned_cols=142 Identities=18% Similarity=0.203 Sum_probs=78.2
Q ss_pred hhHHHHhc-CCC-CCCCCCcceeccchhhHHHHHHHHHHHHHHHhhhcCCCC--------C----CCc-----ccccCCC
Q psy7086 216 IEKFIMQN-VSS-NQTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKNNTSD--------S----SSM-----LIKDEPA 276 (376)
Q Consensus 216 LErliiq~-~G~-ttTPTPsq~~~p~~vt~eqe~~a~gfv~al~~l~~~~~~--------~----~~~-----~ikeEPq 276 (376)
|+||-.+. ++. .+||-|...+|-. |-..-+.|...|--||.+.---.+. . .|+ .+-+--.
T Consensus 674 LDki~~~~~~l~~i~tpenvPRLfDL-v~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~rr~RVvTL~G~lIe~SG 752 (1293)
T KOG0996|consen 674 LDKIKDHQKKLAPITTPENVPRLFDL-VKCKDEKFRPAFYFALRDTLVADNLEQATRIAYGKDRRWRVVTLDGSLIEKSG 752 (1293)
T ss_pred hHhhhhhhhccCCCCCCCCcchHhhh-hccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCCCceEEEEecceeecccc
Confidence 45554333 455 6788887777764 4444455888898888654322211 0 111 2233334
Q ss_pred CCCCCCCCC----------CCCCCcchHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 277 HSIASTSPP----------MSPIDMESQERIKIERKRQRNRVAASKCRKRK---LERIANLEERVKILKGENNELASVAS 343 (376)
Q Consensus 277 ~vp~~~spp----------~sPiD~eeqE~iKreRRReRNRvAAsKCRqRK---Ke~I~~LE~kvk~Le~eN~eL~~ei~ 343 (376)
++.-|++++ +.+++.++-+ +.++...+-+..|..-+.+. -+++.+|..++..|+.+...+..++.
T Consensus 753 tmtGGG~~v~~g~mg~~~~~t~~s~~~v~--~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k 830 (1293)
T KOG0996|consen 753 TMTGGGKKVKGGRMGTSIRVTGVSKESVE--KLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVK 830 (1293)
T ss_pred cccCCCCcCCCCCCCCccccCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHH
Confidence 433332221 3344443333 44444444444444333332 24566677777777777777777777
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy7086 344 KLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 344 ~LreEv~~LKq~Ll~H~ 360 (376)
.+-.++..|+..|.+|-
T Consensus 831 ~~~~~~~~l~~~i~~~E 847 (1293)
T KOG0996|consen 831 RLAELIEYLESQIAELE 847 (1293)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777777765
No 41
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=67.79 E-value=50 Score=33.01 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 304 QRNRVAASKCRK-RKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 304 eRNRvAAsKCRq-RKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
.|+++++.+--- .++..+.+|+.++..++.+..++..+...++.++..++..+....
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r 271 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECR 271 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444433322 245577778888888888888888888888888888777776554
No 42
>PLN02320 seryl-tRNA synthetase
Probab=67.54 E-value=15 Score=39.47 Aligned_cols=65 Identities=22% Similarity=0.138 Sum_probs=48.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q psy7086 302 KRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQI 366 (376)
Q Consensus 302 RReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l 366 (376)
+.+||.++..--.+++.+..++|..+++.|+.+..+|+.++..+.+++..+=..|-+-.+.+||+
T Consensus 113 r~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~VP~ 177 (502)
T PLN02320 113 RAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPV 177 (502)
T ss_pred HHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 56788777665444455567788888999999999999988888888877766666655556664
No 43
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=67.20 E-value=54 Score=28.51 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=42.6
Q ss_pred HhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 303 RQRNRVAASKCRKRKLE-RIANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 303 ReRNRvAAsKCRqRKKe-~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
-++.+.++-+-.-|.++ .+-+++.+++.|...|..|...|..|.+|+.....
T Consensus 23 eEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~ 75 (102)
T PF10205_consen 23 EEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQ 75 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666667666677666 88999999999999999999999999999885433
No 44
>PRK00295 hypothetical protein; Provisional
Probab=67.09 E-value=24 Score=28.00 Aligned_cols=40 Identities=28% Similarity=0.381 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Q psy7086 319 ERIANLEERVKILKGENNELASV-------ASKLKQQVCSLKEQVME 358 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~e-------i~~LreEv~~LKq~Ll~ 358 (376)
++|.+||.++.-.+.-..+|... |..|+.++..|.+.|..
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777776666655555544 45556666666555544
No 45
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=67.08 E-value=28 Score=27.48 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
++|.+||.++.-.+.-..+|...+.....++..|+.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~ 39 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQR 39 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667766666666666665544444444443333
No 46
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=67.01 E-value=41 Score=28.48 Aligned_cols=48 Identities=27% Similarity=0.302 Sum_probs=26.9
Q ss_pred hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 306 NRVAASK--CRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 306 NRvAAsK--CRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
.+|+|-| +=.|=..++.+|+.++..+..+|..|+.++..-+.|-..|=
T Consensus 34 ~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll 83 (87)
T PF12709_consen 34 TKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELL 83 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577774 22334445556666666666666666666655555555443
No 47
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=66.97 E-value=22 Score=30.74 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEH 359 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H 359 (376)
+.+..|-.++..|+....+|..+...|+-|...|+..|..-
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788888888888888888999999999988764
No 48
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=66.89 E-value=18 Score=34.78 Aligned_cols=41 Identities=29% Similarity=0.274 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Q psy7086 318 LERIANLEERVKILKGENNELASVAS---KLKQQVCSLKEQVME 358 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~---~LreEv~~LKq~Ll~ 358 (376)
.....+|.++-+.|++||.+|+.++. .|++|..+||.+|.-
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556777777777777777777766 678889999998753
No 49
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.53 E-value=48 Score=31.63 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
..+.+|+.+.+.|+.+...++.++..|+.++..++..
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666665555544
No 50
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=65.41 E-value=40 Score=31.74 Aligned_cols=9 Identities=33% Similarity=0.198 Sum_probs=5.1
Q ss_pred HHHHHHHHH
Q psy7086 244 EQELMAKSF 252 (376)
Q Consensus 244 eqe~~a~gf 252 (376)
=-|++|-|.
T Consensus 40 ~REg~A~Gl 48 (190)
T PF05266_consen 40 LREGMAVGL 48 (190)
T ss_pred hhhHHHHHH
Confidence 346666663
No 51
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=65.31 E-value=30 Score=27.06 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
.+|++|...|..|..+...|..++..|+.++...|..-
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777777777777777666643
No 52
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=64.97 E-value=11 Score=29.77 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 326 ERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 326 ~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
++|+.|+.+..+|..++..|+.|...||+.+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567777777777777777777777777653
No 53
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=64.83 E-value=18 Score=30.01 Aligned_cols=51 Identities=27% Similarity=0.372 Sum_probs=30.5
Q ss_pred HHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 302 KRQRNRVAASKCRKRKL-ERIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 302 RReRNRvAAsKCRqRKK-e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
+.+||.++..=--.++. +..+.|-.+++.++.+..+|..++..+.+++..+
T Consensus 49 r~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 49 RAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677666553333332 3566677777777777777776666666655543
No 54
>PRK04325 hypothetical protein; Provisional
Probab=64.45 E-value=28 Score=28.06 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q psy7086 319 ERIANLEERVKILKGENNELASVA-------SKLKQQVCSLKEQVME 358 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei-------~~LreEv~~LKq~Ll~ 358 (376)
++|.+||.++.-.+.-..+|...+ ..|+.++..|...|..
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777776666666665444 4555555555555544
No 55
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=64.44 E-value=20 Score=27.56 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
-.+..+..++..++.++.+|+.++..|+.++..|
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566788888888888888888888888888888
No 56
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=64.25 E-value=19 Score=37.29 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=46.2
Q ss_pred HHhhhHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q psy7086 302 KRQRNRVAASKCRKR-KLER-IANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQI 366 (376)
Q Consensus 302 RReRNRvAAsKCRqR-KKe~-I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l 366 (376)
+.+||.++..--..+ +.+. .+.|..+++.++.+..+|..++..+.+++..+-..|-++.+.++|+
T Consensus 50 ~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~ 116 (418)
T TIGR00414 50 QAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPV 116 (418)
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 467887766543322 2233 6788888888888888888888888888887777776666666665
No 57
>PRK00736 hypothetical protein; Provisional
Probab=64.09 E-value=30 Score=27.49 Aligned_cols=42 Identities=24% Similarity=0.369 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhc
Q psy7086 319 ERIANLEERVKILKGENNELA-------SVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~-------~ei~~LreEv~~LKq~Ll~H~ 360 (376)
++|.+||.++.-.+.-..+|. .+|..|+.++..|.+.|....
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777777666666555554 444566667777766666543
No 58
>PRK02793 phi X174 lysis protein; Provisional
Probab=63.64 E-value=30 Score=27.76 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Q psy7086 319 ERIANLEERVKILKGENNELA-------SVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~-------~ei~~LreEv~~LKq~Ll~ 358 (376)
++|.+||.++.-.+.-..+|. .+|..|+.++..|++.|..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666665555554 4445566666666666554
No 59
>PRK02119 hypothetical protein; Provisional
Probab=63.36 E-value=33 Score=27.60 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Q psy7086 319 ERIANLEERVKILKGENNELAS-------VASKLKQQVCSLKEQVME 358 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~-------ei~~LreEv~~LKq~Ll~ 358 (376)
++|.+||.++.-.+.-..+|.. ++..|+.++..|++.|..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666666666666655555544 445566666666666554
No 60
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=63.33 E-value=75 Score=29.96 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7086 318 LERIANLEERVKILKGE-------NNELASVASKLKQQVCSLKEQVMEH 359 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~e-------N~eL~~ei~~LreEv~~LKq~Ll~H 359 (376)
-..|.+||.++..|+.+ +.+...+|..|+.++..+++.+..+
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555553 3333344555555555555555433
No 61
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=62.81 E-value=21 Score=29.97 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 315 KRKLERIANLEERVKILKGENNELASVASKLKQQ 348 (376)
Q Consensus 315 qRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreE 348 (376)
-.|+..++.|..++..++.+|..|..++..+++|
T Consensus 76 ~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~e 109 (109)
T PF03980_consen 76 PYKKKEREQLNARLQELEEENEALAEEIQEQRKE 109 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3456788999999999999999999999888764
No 62
>PRK04863 mukB cell division protein MukB; Provisional
Probab=62.70 E-value=25 Score=42.37 Aligned_cols=75 Identities=24% Similarity=0.428 Sum_probs=45.7
Q ss_pred CCCcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q psy7086 288 PIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQIN 367 (376)
Q Consensus 288 PiD~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l~ 367 (376)
|.|.+.+++.+..|...-+++.+.+.|. ..|+...-..+.+...|...+..+..+...++..+..+...+|+++
T Consensus 1049 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~v~ 1122 (1486)
T PRK04863 1049 PADSGAEERARARRDELHARLSANRSRR------NQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVL 1122 (1486)
T ss_pred CCCccHHHHHHHhHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554444444455666665543 4455566666666666666666666666666666666666677766
Q ss_pred c
Q psy7086 368 V 368 (376)
Q Consensus 368 ~ 368 (376)
.
T Consensus 1123 ~ 1123 (1486)
T PRK04863 1123 R 1123 (1486)
T ss_pred H
Confidence 3
No 63
>KOG3119|consensus
Probab=62.65 E-value=41 Score=33.09 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=55.5
Q ss_pred CCCCCCCCcchHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy7086 283 SPPMSPIDMESQERIKIERKR-QRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVH 361 (376)
Q Consensus 283 spp~sPiD~eeqE~iKreRRR-eRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~ 361 (376)
+.+..--|.++.|+.+|---. +|=|.+++.-=..-..++..|+.+-..|..+...|+.++..|++-...+-........
T Consensus 185 ~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~~~~~~ 264 (269)
T KOG3119|consen 185 SSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPGGALSS 264 (269)
T ss_pred CCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccc
Confidence 444555688888874443222 3334444444456667899999999999999999999999999877775555554544
Q ss_pred CCC
Q psy7086 362 NGC 364 (376)
Q Consensus 362 ~gC 364 (376)
|.|
T Consensus 265 ~~~ 267 (269)
T KOG3119|consen 265 PEL 267 (269)
T ss_pred ccc
Confidence 433
No 64
>KOG4196|consensus
Probab=62.19 E-value=46 Score=30.26 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
++.+++++ .+|+.++..|..+++.|++|+..++..+....
T Consensus 69 R~KRv~Qk-~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 69 RVKRVQQK-HELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777766 46999999999999999999999998876544
No 65
>PRK04406 hypothetical protein; Provisional
Probab=61.68 E-value=33 Score=27.81 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh
Q psy7086 319 ERIANLEERVKILKGENNELA-------SVASKLKQQVCSLKEQVMEH 359 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~-------~ei~~LreEv~~LKq~Ll~H 359 (376)
++|.+||.++.-.+.-..+|. .+|..|+.++..|++.|..-
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356666666666655555554 44455666666666666543
No 66
>PF15556 Zwint: ZW10 interactor
Probab=61.16 E-value=90 Score=30.62 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=25.9
Q ss_pred HhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 303 RQRNRVAASKCRKRKLER-------IANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 303 ReRNRvAAsKCRqRKKe~-------I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
..+.++|..|+|--.+.| +..|.+...++..+...-..++..|..++..||++
T Consensus 111 qaKKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQ 170 (252)
T PF15556_consen 111 QAKKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQ 170 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666665555444 44555555555544444444444444444444443
No 67
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=60.99 E-value=30 Score=27.76 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
+..|+++++.|-.....|+.+...|++++..+..
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ 35 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWRE 35 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666554
No 68
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=60.65 E-value=1.1e+02 Score=28.97 Aligned_cols=54 Identities=24% Similarity=0.204 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 304 QRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 304 eRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
.++-..-..+=..-+.++..++.+++.|+.++..|...+..|..|...|...+.
T Consensus 78 L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 78 LKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333333444455667788888999999999999888888888888876644
No 69
>KOG2391|consensus
Probab=60.30 E-value=33 Score=35.54 Aligned_cols=43 Identities=28% Similarity=0.326 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 313 CRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 313 CRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
-|.|.+++++++....+.|++.-++|..-...|+.++..|+++
T Consensus 219 lR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq 261 (365)
T KOG2391|consen 219 LRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQ 261 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443
No 70
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=59.79 E-value=14 Score=29.30 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
+.++-|.+++.+|+.+|..|+.+...|+.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555566666666666666555554
No 71
>PLN02678 seryl-tRNA synthetase
Probab=59.54 E-value=29 Score=36.72 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=43.7
Q ss_pred HHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q psy7086 302 KRQRNRVAASKCR-KRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQI 366 (376)
Q Consensus 302 RReRNRvAAsKCR-qRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l 366 (376)
+.+||.++..--. ++..+..++|..+++.|+.+...|..++..+.+++..+-..|-+....++|+
T Consensus 53 r~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~VP~ 118 (448)
T PLN02678 53 RKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVPV 118 (448)
T ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 4577766654432 3444566778888888888888888888888877777666655555555554
No 72
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=59.54 E-value=1e+02 Score=29.12 Aligned_cols=11 Identities=0% Similarity=0.069 Sum_probs=7.0
Q ss_pred cceeccchhhH
Q psy7086 233 TQVLFSTNIME 243 (376)
Q Consensus 233 sq~~~p~~vt~ 243 (376)
..|+++.++..
T Consensus 10 ~~~~C~~C~~~ 20 (302)
T PF10186_consen 10 RRFYCANCVNN 20 (302)
T ss_pred CCeECHHHHHH
Confidence 34677776665
No 73
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=59.41 E-value=42 Score=28.83 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 315 KRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 315 qRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
..=-..+..|+++++.+..++.+|+..+..+.+++..||..+
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333345778888888888888888888888888888887653
No 74
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=58.75 E-value=14 Score=38.11 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVASKLK 346 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~Lr 346 (376)
..|+++-..|++||++|+.++..|+
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555553
No 75
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=58.60 E-value=49 Score=35.57 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+++.|+.+++.+..+..++..+|+.|..|+..|+.++.
T Consensus 84 qLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 84 QYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455557777888999999999999999873
No 76
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=58.52 E-value=41 Score=32.95 Aligned_cols=48 Identities=25% Similarity=0.359 Sum_probs=34.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLK 346 (376)
Q Consensus 298 KreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~Lr 346 (376)
.|+|.|.||..=-... .+-.+.+..|+.+++.|+..|.+|=+++.-|.
T Consensus 87 QRDRFR~Rn~ELE~el-r~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 87 QRDRFRQRNAELEEEL-RKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888887766555 34456777888888888888888877776654
No 77
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=58.31 E-value=39 Score=29.50 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
+.+..|-.++..|+....+|..+...|+-|...||..|.+
T Consensus 15 ~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 15 QNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777778888888888888888888888875
No 78
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=58.19 E-value=61 Score=30.28 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 311 SKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 311 sKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
..-.++-++.+.+|+.+++.|+.+|.+|..+...+++....|-.++..
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667788899999999999999999988888888888776543
No 79
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=57.87 E-value=31 Score=35.86 Aligned_cols=65 Identities=23% Similarity=0.252 Sum_probs=42.0
Q ss_pred HHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q psy7086 302 KRQRNRVAASKCRK-RKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQI 366 (376)
Q Consensus 302 RReRNRvAAsKCRq-RKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l 366 (376)
+.+||.++..--.. ++.+..+.|..+++.++.+..+|..++..+.+++..+-..|-+....++|+
T Consensus 48 r~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~vP~ 113 (425)
T PRK05431 48 QAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPV 113 (425)
T ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 45666655443321 222245677788888888888888888888877777666666655555554
No 80
>KOG3335|consensus
Probab=56.17 E-value=25 Score=33.30 Aligned_cols=40 Identities=20% Similarity=0.298 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 314 RKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 314 RqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
-+.++..+.+|+.++..|+.+..+++..++.|...+....
T Consensus 101 ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~ 140 (181)
T KOG3335|consen 101 EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPE 140 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 3556677888888888888877777776666664444433
No 81
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=56.06 E-value=62 Score=26.83 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
+|..|++.+..|-.+..+.+.+...|+.|...|.+.|
T Consensus 24 ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI 60 (80)
T PF10224_consen 24 EILELQDSLEALSDRVEEVKEENEKLESENEYLQQYI 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444454444444444444444444445544444444
No 82
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=55.98 E-value=40 Score=26.32 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
..+.+++..+..++.+|.+++..++.+.+-+..|=.+
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888899999999999999999999887655443
No 83
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=54.97 E-value=65 Score=28.35 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNEL 338 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL 338 (376)
..+..|+..+..|+.++.++
T Consensus 66 ~d~~~l~~~~~rL~~~~~~~ 85 (151)
T PF11559_consen 66 SDIERLQNDVERLKEQLEEL 85 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 84
>PRK00846 hypothetical protein; Provisional
Probab=54.67 E-value=51 Score=27.18 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 319 ERIANLEERVKILKGENNE-------LASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~e-------L~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
++|.+||.++.-.+.-..+ ....+..|++++..|+..|....
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666555554444444 44555666666676666666554
No 85
>PHA03162 hypothetical protein; Provisional
Probab=54.03 E-value=21 Score=32.38 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy7086 336 NELASVASKLKQQVCSLKEQVMEHVHN 362 (376)
Q Consensus 336 ~eL~~ei~~LreEv~~LKq~Ll~H~~~ 362 (376)
++|.+++..|+-|...||.+|.+|+++
T Consensus 16 EeLaaeL~kLqmENK~LKkkl~~~~~~ 42 (135)
T PHA03162 16 EDLAAEIAKLQLENKALKKKIKEGTDD 42 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 567778888888888999999999954
No 86
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=52.83 E-value=70 Score=25.77 Aligned_cols=42 Identities=31% Similarity=0.422 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
+-+..|+.+.+.++.+...|......+..++..++..|....
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~ 103 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELF 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466778888888888888888888888888888888777654
No 87
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=52.80 E-value=18 Score=36.72 Aligned_cols=38 Identities=34% Similarity=0.460 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
-.++.|+.+++.|+.+|..|+.++..|..+...+...-
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekE 197 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKE 197 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHH
Confidence 57889999999999999999999999987766655443
No 88
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=52.43 E-value=55 Score=27.70 Aligned_cols=41 Identities=27% Similarity=0.286 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 312 KCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 312 KCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
|--.=|+.+..+-+.+++.|+.++..|..++..|+.++..-
T Consensus 35 KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 35 KVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555556666777777777777777776666655443
No 89
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=52.25 E-value=65 Score=28.65 Aligned_cols=46 Identities=24% Similarity=0.324 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 315 KRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 315 qRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
..|.+-+++|+++.+.|+-+...|...-..+++++..|+..|..-.
T Consensus 66 ~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 66 VSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777777777777777777777777777777777776544
No 90
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=52.11 E-value=87 Score=28.65 Aligned_cols=9 Identities=22% Similarity=0.456 Sum_probs=4.7
Q ss_pred HHHHHHhhh
Q psy7086 252 FQDTYNELK 260 (376)
Q Consensus 252 fv~al~~l~ 260 (376)
|++++....
T Consensus 62 f~ds~~~~~ 70 (192)
T PF05529_consen 62 FLDSIRRMY 70 (192)
T ss_pred HHHHHHHHH
Confidence 555555544
No 91
>PF15058 Speriolin_N: Speriolin N terminus
Probab=51.89 E-value=37 Score=32.61 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy7086 322 ANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVH 361 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~ 361 (376)
+.|..+++.|-.||.+|+..+..++ |.++||..|-+-+.
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLir-EN~eLksaL~ea~~ 46 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLIR-ENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHhhc
Confidence 3456677777799999999987665 66899999665443
No 92
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=51.74 E-value=38 Score=26.74 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 316 RKLERIANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 316 RKKe~I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
.....++.++.+.+.++.+|.+|+.++..|..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34456777888888888888888888877765
No 93
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=51.18 E-value=46 Score=28.77 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 323 NLEERVKILKGENNELASVASKLKQQ 348 (376)
Q Consensus 323 ~LE~kvk~Le~eN~eL~~ei~~LreE 348 (376)
.++.+.+.|..++..|..+|..|++.
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55555555666666666666666555
No 94
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=50.16 E-value=75 Score=26.52 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+-+..|+.+.+.++.+...|...+..+..++..|+..|.
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666666554
No 95
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=50.12 E-value=1.9e+02 Score=25.99 Aligned_cols=42 Identities=29% Similarity=0.347 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 312 KCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 312 KCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
.-++...+++..++..++.+..+-.+|..++..+++++..++
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 164 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELR 164 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555533333333333333
No 96
>KOG1319|consensus
Probab=50.02 E-value=2.5e+02 Score=27.29 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=17.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Q psy7086 299 IERKRQRNRVAASKCRKRKLERIAN 323 (376)
Q Consensus 299 reRRReRNRvAAsKCRqRKKe~I~~ 323 (376)
.+-.++|-|.|-.+|-+++++-|..
T Consensus 55 k~syk~rrr~aHtqaEqkRRdAIk~ 79 (229)
T KOG1319|consen 55 KESYKDRRRRAHTQAEQKRRDAIKR 79 (229)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555677788888888888776643
No 97
>KOG4797|consensus
Probab=49.77 E-value=50 Score=29.31 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
.+=...++|+.|+.+..+|...+..|++|..-||..
T Consensus 61 LmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 61 LMFAVREEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455556666666666666666666665555543
No 98
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=49.72 E-value=24 Score=32.82 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=3.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7086 335 NNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 335 N~eL~~ei~~LreEv~~LKq~L 356 (376)
...|+.+++.|++|+..||+.+
T Consensus 26 KE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 26 KENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 99
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.70 E-value=55 Score=27.04 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVAS-------KLKQQVCSLKEQ 355 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~-------~LreEv~~LKq~ 355 (376)
.+-|.-|+-++++|+.+|..|..++. .|+.+..+||+.
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888889999998887776666 455555566553
No 100
>PHA03155 hypothetical protein; Provisional
Probab=49.67 E-value=26 Score=31.01 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q psy7086 336 NELASVASKLKQQVCSLKEQVMEHVHNGCQI 366 (376)
Q Consensus 336 ~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l 366 (376)
.+|.+++..|+-|...||+.|.+|+..+..+
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~ 41 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKLLQHGNPEDEL 41 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCccc
Confidence 5677888888888889999999998766544
No 101
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=49.27 E-value=1.2e+02 Score=23.16 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQV 349 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv 349 (376)
..+..|+.+...|..++..|..++..|..++
T Consensus 33 ~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 33 EKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666666666666666666666665554
No 102
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=49.21 E-value=1.3e+02 Score=27.30 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7086 304 QRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEH 359 (376)
Q Consensus 304 eRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H 359 (376)
+.|+..+-+==.-.+..|..|+.++..+..+...|..++..|+.+...|-+.+..+
T Consensus 37 q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 37 QENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666777788888999999988888888888888888877776665544
No 103
>smart00338 BRLZ basic region leucin zipper.
Probab=49.06 E-value=1.2e+02 Score=23.15 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 326 ERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 326 ~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
..+..|+.+...|..++..|+.++..|+..+.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555544
No 104
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=48.58 E-value=77 Score=26.95 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 317 KLERIANLEERVKIL--KGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 317 KKe~I~~LE~kvk~L--e~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
...+++.+|.+++.| ...-.+|..++..++-++..+...|
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345666666666666 4555555555555555555555444
No 105
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=48.49 E-value=15 Score=34.17 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 326 ERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 326 ~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
++-+.|..+++.|+.|+..|+.|+ .+++.+.
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 445567788888888888888888 6666654
No 106
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=48.46 E-value=62 Score=30.23 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
..++.+.+.|+.++.+|..++..|+.++..|+..
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555443
No 107
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=48.40 E-value=60 Score=33.59 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy7086 323 NLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHN 362 (376)
Q Consensus 323 ~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~ 362 (376)
.|+.+++.|+.++..|..+...+++|+.++|..+......
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PTZ00454 26 ELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSV 65 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455566666666666666666666666666666665543
No 108
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=47.90 E-value=52 Score=25.93 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
.+..+..++..++.+..++..+...|+.|+..|.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45677777888888888888888888888877754
No 109
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=47.77 E-value=1.9e+02 Score=25.33 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 324 LEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 324 LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
++.+...++.++..+...+..+++++..++..+.
T Consensus 92 ~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 92 AEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555555566666655443
No 110
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=47.73 E-value=2.2e+02 Score=26.99 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
.+..|+.+-..+-..|-++...+..|+.|+.+||..-..
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999987553
No 111
>KOG1853|consensus
Probab=47.54 E-value=55 Score=33.03 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 307 RVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 307 RvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
|.--..+..--++...+|+.++..++.+|.+|.+.+..|+-|+..+|..+..
T Consensus 33 reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~ 84 (333)
T KOG1853|consen 33 REELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQED 84 (333)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566667778889999999999999999999999999999999987653
No 112
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=47.43 E-value=40 Score=34.99 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc
Q psy7086 327 RVKILKGENNELASVASKLKQQVCSLKEQVM-EHV 360 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll-~H~ 360 (376)
+.-.|..||..|+.|++.|+.++.+|+...+ .|+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V 67 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEMLRSHV 67 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4445555666666666666666666655554 344
No 113
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=47.15 E-value=1.2e+02 Score=25.80 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKL 345 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~L 345 (376)
+.++.|++++.....+-..++.++..|
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333344333333333333333333333
No 114
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=46.86 E-value=44 Score=33.36 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
.-++.|++++..|+.+|.+|+.+++.++.++...++.+....
T Consensus 32 ~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~ 73 (308)
T PF11382_consen 32 NLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVA 73 (308)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999888876544
No 115
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=46.76 E-value=59 Score=24.17 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 324 LEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 324 LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
-...+..|+.+...|..++..|+.++..|+.
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666677777777777777776654
No 116
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=46.37 E-value=1.2e+02 Score=24.29 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEH 359 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H 359 (376)
..-|..|..++..++....+|...+..+..++..|+..+..|
T Consensus 32 ~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~ 73 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKRA 73 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 356677777777777777777777777777777777766543
No 117
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=46.07 E-value=52 Score=26.71 Aligned_cols=36 Identities=28% Similarity=0.248 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 325 EERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 325 E~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
.+.++.+-.+|-+|+.++..|+.++..++..|.+..
T Consensus 35 ~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 35 PESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788999999999999999999999887653
No 118
>PF15456 Uds1: Up-regulated During Septation
Probab=45.97 E-value=86 Score=27.77 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVH 361 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~ 361 (376)
+.+.+-++.+......-.++..++..+......+++.|++|.-
T Consensus 74 ~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~rLLeH~A 116 (124)
T PF15456_consen 74 ESSLKAEEELAESDRKCEELAQELWKLENRLAEVRQRLLEHTA 116 (124)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888889999999999999999999999999984
No 119
>PF15556 Zwint: ZW10 interactor
Probab=45.80 E-value=1.6e+02 Score=28.87 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=42.9
Q ss_pred HHHHHHhhhHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 298 KIERKRQRNRVAASKCR---KRKLERIANLEERVKIL----KGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 298 KreRRReRNRvAAsKCR---qRKKe~I~~LE~kvk~L----e~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
|..--.+|.|+|-.+-. +|....+.+.-.+|+.- ..+...|..++..|+.+..+-++.|..|-
T Consensus 113 KKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQR~q 182 (252)
T PF15556_consen 113 KKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQRHQ 182 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334577777766543 36677666655555444 34667778888889999998888888875
No 120
>KOG1318|consensus
Probab=45.58 E-value=1.9e+02 Score=30.77 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 332 KGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 332 e~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
+.+-..|...+..|..++.+||.+...|.
T Consensus 296 ~~rqk~le~~n~~L~~rieeLk~~~~~~~ 324 (411)
T KOG1318|consen 296 ENRQKKLESTNQELALRIEELKSEAGRHG 324 (411)
T ss_pred HhhhhHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 33445556666677777777777766665
No 121
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=44.97 E-value=55 Score=31.90 Aligned_cols=32 Identities=9% Similarity=0.129 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
-+|+.+++.|+.+..+|+.+++.+.-++.+++
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444454444555444444444444444
No 122
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=44.90 E-value=71 Score=28.62 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
+...++.++..|...|..|..++..+..++..++..+-.
T Consensus 29 ~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee 67 (143)
T PF12718_consen 29 ENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEE 67 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677777777777777777777777777777776653
No 123
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=44.62 E-value=1.9e+02 Score=24.31 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 309 AASKCRKRKLERIANLEERVKILKGENNELASVASKLK 346 (376)
Q Consensus 309 AAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~Lr 346 (376)
.+.+-+..+...|..|..++..|..++..+...+..+.
T Consensus 71 ~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 71 EEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555554444
No 124
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=44.32 E-value=23 Score=26.96 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELA 339 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~ 339 (376)
-++.+||++|..|+..|.+|=
T Consensus 18 vrv~eLEeEV~~LrKINrdLf 38 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLF 38 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHH
Confidence 468899999999999998874
No 125
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=43.39 E-value=73 Score=24.55 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 324 LEERVKILKGENNELASVASKLK 346 (376)
Q Consensus 324 LE~kvk~Le~eN~eL~~ei~~Lr 346 (376)
...++..|+.+|..|+.++..++
T Consensus 27 a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 27 ARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666655544
No 126
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=43.03 E-value=1.9e+02 Score=26.64 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 324 LEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 324 LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
|..--+.+..+..+|...+..|..++.+|...+..
T Consensus 80 l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 80 LLELEDQWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33334666777788888888888888777755543
No 127
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=43.02 E-value=46 Score=27.53 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 328 VKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 328 vk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
+.++..+|..|+.++..|..|+++++..
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567788888888888888888887776
No 128
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=42.97 E-value=1.9e+02 Score=23.97 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
+-+..|-++|+..+.+|.+|+.+...|.+=+..|-.
T Consensus 30 ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 30 DSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888999999999999999999887777743
No 129
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=42.87 E-value=65 Score=31.84 Aligned_cols=36 Identities=28% Similarity=0.196 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q psy7086 323 NLEERVKILKGENNELASVA----SKLKQQVCSLKEQVME 358 (376)
Q Consensus 323 ~LE~kvk~Le~eN~eL~~ei----~~LreEv~~LKq~Ll~ 358 (376)
+|+++-+.|+.++.+|..+. ..|++|..+||.+|.-
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444444444442222 2367777777776653
No 130
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=42.25 E-value=59 Score=28.08 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
.....+...+..++.++..|..+...|++|+..|++-
T Consensus 50 ~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 50 ADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4566778888899999999999999999999999876
No 131
>PRK00295 hypothetical protein; Provisional
Probab=42.18 E-value=1.2e+02 Score=24.00 Aligned_cols=35 Identities=11% Similarity=0.063 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
+.|++|-+.|-....+...|..++..|.+++..+.
T Consensus 19 ~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 19 DTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566666666666677777777777766665554
No 132
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=41.51 E-value=16 Score=30.90 Aligned_cols=36 Identities=31% Similarity=0.432 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
.++..|...+..|..+|.+|..++..|+.++..++.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~ 60 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELRE 60 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 466777777777777777777777766666555543
No 133
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=41.51 E-value=89 Score=24.50 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
|..|..+|..|..+...|+.++...++|-.+--+.|
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666555444433
No 134
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=41.20 E-value=2.7e+02 Score=25.00 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy7086 321 IANLEERVKILK 332 (376)
Q Consensus 321 I~~LE~kvk~Le 332 (376)
|..|+.++..|+
T Consensus 37 I~sL~~K~~~lE 48 (143)
T PF12718_consen 37 ITSLQKKNQQLE 48 (143)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 135
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=41.13 E-value=1.3e+02 Score=22.51 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy7086 323 NLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHN 362 (376)
Q Consensus 323 ~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~ 362 (376)
.|-..+..+..--.+|+..+..-..|+..||+.|++=..|
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~kE~~~LRntI~eC~aC 44 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIKETRFLRNTIMECQAC 44 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4556677777777888888888889999999999975544
No 136
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=40.86 E-value=87 Score=30.44 Aligned_cols=42 Identities=24% Similarity=0.300 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
+-|..||..++..+.++.+....+..+.+|+..||+.|.++.
T Consensus 60 ~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 60 QDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888888888888888877765
No 137
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=40.08 E-value=1.6e+02 Score=29.40 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=17.1
Q ss_pred ccCCCcCCcccCChhhhHHHHhc
Q psy7086 201 LSSPDLNKLNFTTPEIEKFIMQN 223 (376)
Q Consensus 201 L~SpDl~~LKLaSPELErliiq~ 223 (376)
.+.|=|.|..++.=||.+-|-++
T Consensus 65 ~~~P~Lely~~~c~EL~~~I~eg 87 (325)
T PF08317_consen 65 CTVPMLELYQFSCRELKKYISEG 87 (325)
T ss_pred cCChHHHHHHHHHHHHHHHHHHH
Confidence 35576777788888888887776
No 138
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=40.07 E-value=1.1e+02 Score=28.89 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 317 KLERIANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 317 KKe~I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
|.+.+.+-+.+.+.++.+..+|+.++...++
T Consensus 144 r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 144 RQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4466666666666666666666666555543
No 139
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=39.88 E-value=29 Score=29.19 Aligned_cols=17 Identities=12% Similarity=0.175 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7086 340 SVASKLKQQVCSLKEQV 356 (376)
Q Consensus 340 ~ei~~LreEv~~LKq~L 356 (376)
.+...|++|+..|+...
T Consensus 51 ~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 51 MENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445666666666554
No 140
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=39.81 E-value=1.6e+02 Score=28.16 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELA 339 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~ 339 (376)
++.++.++..|+.+...+.
T Consensus 79 v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 79 VASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 141
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=39.77 E-value=2e+02 Score=29.61 Aligned_cols=58 Identities=28% Similarity=0.374 Sum_probs=39.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH-------HH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 299 IERKRQRNRVAASKCRKRKLERIA-------NL------------------EERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 299 reRRReRNRvAAsKCRqRKKe~I~-------~L------------------E~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
++|+..++||+.+..=+||.-.+. +| .++|--|..++.+|..++..+..|+..++
T Consensus 123 e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~~~ 202 (323)
T PF08537_consen 123 EERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEITK 202 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999988888866541 11 24556666677777777777777766665
Q ss_pred HHH
Q psy7086 354 EQV 356 (376)
Q Consensus 354 q~L 356 (376)
..|
T Consensus 203 k~L 205 (323)
T PF08537_consen 203 KDL 205 (323)
T ss_pred HHH
Confidence 544
No 142
>KOG0977|consensus
Probab=39.29 E-value=1.7e+02 Score=32.24 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
+..|+.++..++..+..|..++..|+.|+..|...
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~ 184 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREE 184 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 44444444444444444444444444444444333
No 143
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.16 E-value=77 Score=26.20 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 308 VAASKCRKRKLE----RIANLEERVKILKGENNELASVA 342 (376)
Q Consensus 308 vAAsKCRqRKKe----~I~~LE~kvk~Le~eN~eL~~ei 342 (376)
.|-.+-|.||.+ .|..|..++..+..+|..|+.++
T Consensus 60 ~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 60 SALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666654 56666666666666666666554
No 144
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.90 E-value=1.1e+02 Score=30.72 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 314 RKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 314 RqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
=.+-...|+++..++++++.++.++..++..|+.++..|+.-|.+
T Consensus 54 i~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 54 IESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777777777777776665543
No 145
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.88 E-value=52 Score=29.53 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 320 RIANLEERVKILKG--ENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 320 ~I~~LE~kvk~Le~--eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
.+..|+.++..|.. -+.+|...+..|+.++..|...|..
T Consensus 94 ~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 94 EVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554 3466777777777777777777664
No 146
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=38.47 E-value=52 Score=29.28 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy7086 336 NELASVASKLKQQVCSLKEQVMEHVH 361 (376)
Q Consensus 336 ~eL~~ei~~LreEv~~LKq~Ll~H~~ 361 (376)
.+|.+++..|+-|...||.+|.+|.+
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 57888888888899999999999996
No 147
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=38.21 E-value=89 Score=25.69 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
.+..|+++++.++.+...+..++..++.++.-|
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666666666666666666555443
No 148
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=38.06 E-value=3.3e+02 Score=25.48 Aligned_cols=46 Identities=28% Similarity=0.333 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Q psy7086 313 CRKRKLERIANLEERVKILKGENNELA----SVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 313 CRqRKKe~I~~LE~kvk~Le~eN~eL~----~ei~~LreEv~~LKq~Ll~ 358 (376)
-|.+..++++.|+.+.+.|+.+...+. ..+..+++++..++..+..
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANR 153 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444332 3344555555555554443
No 149
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.02 E-value=2.3e+02 Score=25.41 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
.++|...+..|+.++..|..++..|+.
T Consensus 111 ~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 111 NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666677777777777766666664
No 150
>PRK04406 hypothetical protein; Provisional
Probab=37.80 E-value=1.5e+02 Score=24.08 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 323 NLEERVKILKGENNELASVASKLKQQVCS 351 (376)
Q Consensus 323 ~LE~kvk~Le~eN~eL~~ei~~LreEv~~ 351 (376)
.+++++..|+.+..-+...|..|.+.|..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~ 36 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQ 36 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555444433
No 151
>PRK02793 phi X174 lysis protein; Provisional
Probab=37.64 E-value=1.5e+02 Score=23.70 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
.|++|-+.|-....+...|..++..|.+++..+.
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556666666666666666666666666555544
No 152
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=37.51 E-value=69 Score=28.32 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7086 323 NLEERVKILKGENNELASVASK 344 (376)
Q Consensus 323 ~LE~kvk~Le~eN~eL~~ei~~ 344 (376)
.++++.+.|+.+..+|..+++.
T Consensus 109 ~~~~~l~~L~~~i~~L~~~~~~ 130 (134)
T PF07047_consen 109 ELQERLEELEERIEELEEQVEK 130 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 153
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=37.50 E-value=2.4e+02 Score=26.34 Aligned_cols=17 Identities=18% Similarity=0.485 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy7086 244 EQELMAKSFQDTYNELK 260 (376)
Q Consensus 244 eqe~~a~gfv~al~~l~ 260 (376)
.++-|...|-+-+-..-
T Consensus 60 r~~ly~~~F~ELIRQVT 76 (189)
T PF10211_consen 60 REELYSQCFDELIRQVT 76 (189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46678888877554443
No 154
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=37.44 E-value=99 Score=26.12 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVC 350 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~ 350 (376)
++.++.+++.|+.+...|..++..++.++.
T Consensus 76 ~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 76 KETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555554443
No 155
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.36 E-value=1.3e+02 Score=25.00 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 323 NLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 323 ~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
.++.+++.++.+..+|...+..++.++..|+..
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444443
No 156
>PRK02119 hypothetical protein; Provisional
Probab=37.34 E-value=1.6e+02 Score=23.78 Aligned_cols=33 Identities=3% Similarity=0.017 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
.|++|-+.|-....+...|..++..|.+++..+
T Consensus 24 tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 24 LLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555555555555555555444443
No 157
>PRK00736 hypothetical protein; Provisional
Probab=37.23 E-value=1.6e+02 Score=23.30 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
..|++|-+.|-....+...|..++..|.+++..+.
T Consensus 19 ~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 19 KTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566666666666677777777777766665543
No 158
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=37.16 E-value=97 Score=27.59 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
.++++.|+-+++.|+.+-..|..++..|+.++...
T Consensus 76 ~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 76 EERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999999999776543
No 159
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=37.14 E-value=1.4e+02 Score=30.27 Aligned_cols=45 Identities=18% Similarity=0.357 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 316 RKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 316 RKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
.++..+++++.++..++....+...+...++.++..+...+.+..
T Consensus 222 ~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 222 IKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345567778888888888777888888888888888877776655
No 160
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=36.95 E-value=1.1e+02 Score=28.83 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 327 RVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
.+.++..+|..|..-+..++.++..|+..+..
T Consensus 49 ~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 49 LMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 161
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.92 E-value=1.2e+02 Score=23.82 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
++.-+++.++.|-..-.+...+|..|+.++..|...|..
T Consensus 12 ~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 12 KLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666777777666666654
No 162
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=36.58 E-value=2e+02 Score=27.64 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 327 RVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
....+.+||.+|+.++..|+.+..++..
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~ 97 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQ 97 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554443
No 163
>KOG4005|consensus
Probab=36.46 E-value=1.3e+02 Score=30.18 Aligned_cols=44 Identities=39% Similarity=0.561 Sum_probs=22.3
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Q psy7086 312 KCRKRKLE-RIANLEERVKILKGENNEL--------------ASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 312 KCRqRKKe-~I~~LE~kvk~Le~eN~eL--------------~~ei~~LreEv~~LKq~ 355 (376)
|.|.-+.+ .|.+|+++-+.|..+|..| ..++..|++++..||+.
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 33444444 3555655555555555444 44444555555555554
No 164
>PHA02109 hypothetical protein
Probab=36.39 E-value=82 Score=30.27 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 317 KLERIANLEERVKILKGENNELASVASKLKQQV 349 (376)
Q Consensus 317 KKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv 349 (376)
|.+.|.+|+.+++.|..|-..++.++..+|++|
T Consensus 191 ~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~V 223 (233)
T PHA02109 191 KLKQISELTIKLEALSDEACQVKHKILNLRAEV 223 (233)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666555555555555555555443
No 165
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=36.04 E-value=3.2e+02 Score=25.30 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=40.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 299 IERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCS 351 (376)
Q Consensus 299 reRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~ 351 (376)
..++..+.|-.|..+=++|-....+|.++++..+....++...|..|-.++..
T Consensus 85 Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 85 EMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466778888888888888899999998888877777777777666655543
No 166
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=36.03 E-value=81 Score=26.92 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 332 KGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 332 e~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
+.++.+|+.++..|+.|+..||..
T Consensus 77 ~~ei~~L~~el~~L~~E~diLKKa 100 (121)
T PRK09413 77 MKQIKELQRLLGKKTMENELLKEA 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455444
No 167
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=35.95 E-value=1.4e+02 Score=30.92 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
..+..|+.+.+.++.+...++.++..+++|+..|+..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSV 65 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5678899999999999999999999999999998764
No 168
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=35.78 E-value=1.7e+02 Score=26.61 Aligned_cols=7 Identities=29% Similarity=0.553 Sum_probs=2.5
Q ss_pred HhhhHHH
Q psy7086 303 RQRNRVA 309 (376)
Q Consensus 303 ReRNRvA 309 (376)
+|.|.+.
T Consensus 54 ~E~~~iS 60 (161)
T PF04420_consen 54 RELNAIS 60 (161)
T ss_dssp HHHTTS-
T ss_pred HHHHcCC
Confidence 3444443
No 169
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=35.65 E-value=1.3e+02 Score=27.45 Aligned_cols=40 Identities=30% Similarity=0.492 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q psy7086 295 ERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILK---GENNELAS 340 (376)
Q Consensus 295 E~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le---~eN~eL~~ 340 (376)
++.+.+|.+.++|| ++|++++.+|..+...++ .+|..+..
T Consensus 4 ~~Le~ek~~~~~rI------~~K~~~LqEL~~Q~va~knLv~RN~~~~~ 46 (142)
T PF08781_consen 4 EELEEEKQRRRERI------KKKKEQLQELILQQVAFKNLVQRNRQLEQ 46 (142)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 170
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.64 E-value=81 Score=33.95 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 326 ERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 326 ~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
.+-.++..+...|..++..++..+.+|...|
T Consensus 109 ~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 109 SETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555666666666666666666665
No 171
>PRK11546 zraP zinc resistance protein; Provisional
Probab=35.55 E-value=2.7e+02 Score=25.48 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=8.3
Q ss_pred CCCCCCCcchHHH
Q psy7086 284 PPMSPIDMESQER 296 (376)
Q Consensus 284 pp~sPiD~eeqE~ 296 (376)
.+..++..|+++.
T Consensus 39 ~~~~~LT~EQQa~ 51 (143)
T PRK11546 39 QNAAPLTTEQQAA 51 (143)
T ss_pred cccccCCHHHHHH
Confidence 3456777777764
No 172
>KOG0250|consensus
Probab=35.26 E-value=2.3e+02 Score=33.50 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7086 309 AASKCRKRKLERIANLEERV 328 (376)
Q Consensus 309 AAsKCRqRKKe~I~~LE~kv 328 (376)
+..+|+.+....|..++.+.
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666555555
No 173
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=35.20 E-value=3.3e+02 Score=27.27 Aligned_cols=44 Identities=30% Similarity=0.347 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 315 KRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 315 qRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
.++....++++++++.|+.+|..|..+...|-.++..||..+.+
T Consensus 159 eele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 159 EELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 45555666677777777777777777777777777777776544
No 174
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=35.17 E-value=1.7e+02 Score=23.49 Aligned_cols=29 Identities=31% Similarity=0.357 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
+.|..|..+-..|......+...|..||.
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~ 40 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRA 40 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444444444444443333333333333
No 175
>KOG1962|consensus
Probab=34.97 E-value=98 Score=30.14 Aligned_cols=43 Identities=21% Similarity=0.381 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 316 RKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 316 RKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
++....+.++.++..|+.+-+++..+...|.++...|++++..
T Consensus 169 ~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 169 KKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 3445677788888888888888888888888888888888764
No 176
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=34.77 E-value=1.8e+02 Score=24.58 Aligned_cols=41 Identities=27% Similarity=0.380 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
.+-+..|+++++.++.....|......|+.++..+...|.+
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777777777777777777777766654
No 177
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.56 E-value=2.6e+02 Score=25.60 Aligned_cols=11 Identities=36% Similarity=0.419 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy7086 326 ERVKILKGENN 336 (376)
Q Consensus 326 ~kvk~Le~eN~ 336 (376)
++++.++.+..
T Consensus 161 ~ei~~lk~el~ 171 (192)
T PF05529_consen 161 EEIEKLKKELE 171 (192)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 178
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=34.55 E-value=55 Score=25.20 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 317 KLERIANLEERVKILKG----ENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 317 KKe~I~~LE~kvk~Le~----eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+..++.+|+.+.+.-.. .+.....++..|+.|...||..|.
T Consensus 2 w~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 2 WLLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred HHHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 44556666665554331 234455555666666666655543
No 179
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=34.43 E-value=1.4e+02 Score=30.58 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
+..++.+++.++.++.+|..+...++.++..|+..+....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 10 NSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345666777777777777777777777777777776544
No 180
>PRK04325 hypothetical protein; Provisional
Probab=34.01 E-value=1.9e+02 Score=23.31 Aligned_cols=33 Identities=21% Similarity=0.086 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
.|++|-+.|-....+...|..++..|.+++..+
T Consensus 24 tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 24 LIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555566666666666665555444
No 181
>KOG0982|consensus
Probab=33.91 E-value=2.3e+02 Score=30.62 Aligned_cols=35 Identities=34% Similarity=0.339 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
--.++.|+.++..|+.+|.+|+.++..|+.....|
T Consensus 296 sle~Enlqmr~qqleeentelRs~~arlksl~dkl 330 (502)
T KOG0982|consen 296 SLEKENLQMRDQQLEEENTELRSLIARLKSLADKL 330 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888999999999988887776654444
No 182
>KOG4343|consensus
Probab=33.83 E-value=1.1e+02 Score=33.71 Aligned_cols=35 Identities=26% Similarity=0.211 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
+.++.+|..+-+.|+.||..|+.++..|..|...|
T Consensus 308 e~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~ 342 (655)
T KOG4343|consen 308 EARLQALLSENEQLKKENATLKRQLDELVSENQRL 342 (655)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccc
Confidence 34555566666666666666666666555554444
No 183
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=33.61 E-value=1.7e+02 Score=26.97 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q psy7086 325 EERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQINV 368 (376)
Q Consensus 325 E~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l~~ 368 (376)
|..+-.+..++..|..+-..+..++..|+.+|..|...||.+..
T Consensus 22 e~~L~ql~~e~~~L~~ee~~~~~Q~~~L~~LL~~~r~~~~vl~r 65 (147)
T PF02090_consen 22 EQALLQLQREEQKLDAEEEAIEEQRAGLQSLLDTQRAEGCVLSR 65 (147)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHccccccH
Confidence 45567788899999999999999999999999999999998764
No 184
>PRK09343 prefoldin subunit beta; Provisional
Probab=33.37 E-value=1.7e+02 Score=25.39 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
++++.++.+++.|+.+...|+..+..++.+ |+..+..+.
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~~---l~~ll~~~~ 116 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQAK---INEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcC
Confidence 344555577777777777777777666644 344444444
No 185
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=33.16 E-value=1.7e+02 Score=29.19 Aligned_cols=50 Identities=22% Similarity=0.219 Sum_probs=34.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 300 ERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQV 349 (376)
Q Consensus 300 eRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv 349 (376)
...+.+....=.||=.+.++.|++|+.++..|+.+...|...+...|+.+
T Consensus 181 l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~i 230 (258)
T PF15397_consen 181 LLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVI 230 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHh
Confidence 33455666677778888888888887777777777666666666555443
No 186
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.16 E-value=1.3e+02 Score=25.08 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
++++.++.+++.++.+...+..++..++.++..+
T Consensus 70 ~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 70 ERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777766654
No 187
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.85 E-value=3.5e+02 Score=30.35 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCcc
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQ-VMEHVHNGCQI 366 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~-Ll~H~~~gC~l 366 (376)
++..++.++..|+.+..+-..+++.|+.++.+|+.+ -++|.+.|-|+
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~lE~sG~g~pv 522 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPV 522 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcce
Confidence 455677777777777777777888888888888754 34677666554
No 188
>KOG0994|consensus
Probab=32.85 E-value=2.3e+02 Score=34.33 Aligned_cols=44 Identities=23% Similarity=0.267 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 315 KRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 315 qRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
++|.+++++||.++..-+.....+.+++..|..++..+...|.+
T Consensus 1706 ~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~ 1749 (1758)
T KOG0994|consen 1706 NEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINE 1749 (1758)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 45667777777777666666677777777777777666555543
No 189
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.83 E-value=1.4e+02 Score=24.82 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 327 RVKILKGENNELASVASKLKQQVCS 351 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~ 351 (376)
++..+...+..|..+...|++|-..
T Consensus 40 e~q~~q~~reaL~~eneqlk~e~~~ 64 (79)
T COG3074 40 EVQNAQHQREALERENEQLKEEQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444333
No 190
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.39 E-value=2e+02 Score=24.09 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
.+.||.+|...-....-|..+|..|+++...|.+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 191
>KOG2483|consensus
Probab=32.22 E-value=1e+02 Score=30.11 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 315 KRKLERIANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 315 qRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
.|.+++|..|+.+.........+|+.+-..|++++.+|.
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566788888888888877777777777777777777766
No 192
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=32.03 E-value=1.3e+02 Score=25.03 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
++++.|+..++.++.+..++..++..++.++.++
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777888888888888887776654
No 193
>KOG0946|consensus
Probab=31.92 E-value=3.6e+02 Score=31.40 Aligned_cols=43 Identities=28% Similarity=0.261 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 313 CRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 313 CRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
-+.+---.++.|.+..+.|+.+|.+|.+++.....+..+||.+
T Consensus 665 lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q 707 (970)
T KOG0946|consen 665 LIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQ 707 (970)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455677788888888888888888887665555555554
No 194
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=31.88 E-value=1.2e+02 Score=26.63 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 327 RVKILKGENNELASVASKLKQQVCS 351 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~ 351 (376)
+...|++||.-|+-+++.|.+.+.+
T Consensus 80 k~~~LeEENNlLklKievLLDMLte 104 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDMLAE 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777665443
No 195
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=31.87 E-value=1.8e+02 Score=25.27 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
+.|+..++.++....++..++..+.+.+.+|.
T Consensus 104 ~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 104 EELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555554444443
No 196
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.81 E-value=1.3e+02 Score=32.52 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 333 GENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 333 ~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
.+..+|..+..+|+++..+|+.+|.+
T Consensus 109 ~~~~~~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 109 SETQELTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666555443
No 197
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=31.72 E-value=2.6e+02 Score=26.16 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNEL 338 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL 338 (376)
.|+.|+.+...|+.+..+|
T Consensus 128 ~i~~L~~e~~~L~~~~~~l 146 (189)
T PF10211_consen 128 EIEELEEEKEELEKQVQEL 146 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 198
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=31.62 E-value=2.8e+02 Score=24.13 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7086 334 ENNELASVASKLKQQVC 350 (376)
Q Consensus 334 eN~eL~~ei~~LreEv~ 350 (376)
+..++...+..|..+..
T Consensus 106 e~~~~~~r~~dL~~QN~ 122 (132)
T PF07926_consen 106 ELSELEQRIEDLNEQNK 122 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 199
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=31.61 E-value=2.7e+02 Score=23.08 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7086 337 ELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 337 eL~~ei~~LreEv~~LKq~Ll 357 (376)
+|-.+|..|..+|..|.+.|.
T Consensus 58 eLL~EIA~lE~eV~~LE~~v~ 78 (88)
T PF14389_consen 58 ELLEEIALLEAEVAKLEQKVL 78 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555554443
No 200
>PRK09039 hypothetical protein; Validated
Probab=31.33 E-value=3.7e+02 Score=27.37 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
...|+.++...+.+..+...+|..|+.|+..||.+
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444
No 201
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=30.68 E-value=1.5e+02 Score=23.04 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 332 KGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 332 e~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
-.+..+|..+...|++|..+|+.+|.+
T Consensus 32 L~~R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 32 LLDRAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666677777777666654
No 202
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=30.67 E-value=1.3e+02 Score=25.34 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 324 LEERVKILKGENNELASVASKLKQQV 349 (376)
Q Consensus 324 LE~kvk~Le~eN~eL~~ei~~LreEv 349 (376)
++.+...|..+|..|..+...-..|+
T Consensus 28 a~~~~~kL~~en~qlk~Ek~~~~~qv 53 (87)
T PF10883_consen 28 AKKQNAKLQKENEQLKTEKAVAETQV 53 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555554444443
No 203
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=30.53 E-value=3.1e+02 Score=23.00 Aligned_cols=34 Identities=35% Similarity=0.388 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
.....+.+++.|..+...|..++..+.+.+..++
T Consensus 75 ~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 75 KKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666666665555554
No 204
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=30.43 E-value=1.5e+02 Score=25.30 Aligned_cols=33 Identities=18% Similarity=0.071 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
+..++.+++.|+.++.+|+.++.-|+.-+....
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~ 105 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVEYGR 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666667777777777777777776655443
No 205
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=30.40 E-value=3.9e+02 Score=24.18 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 314 RKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 314 RqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
-++..+.+..+..-++....+..+|..++..|.+++..|+..++.|.
T Consensus 41 ~~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rR 87 (126)
T PF07028_consen 41 QKKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERR 87 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445566666666666666777788888888888888888888775
No 206
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=30.39 E-value=1.6e+02 Score=26.76 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEH 359 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H 359 (376)
..|..++..++.++.+...|......+...+.+||+.|...
T Consensus 47 ~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~ 87 (162)
T PF05565_consen 47 KVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDA 87 (162)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888888888888888888888888888888888754
No 207
>KOG1760|consensus
Probab=30.21 E-value=1.5e+02 Score=26.89 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
.+.||+.-+.+..+...|++++.....++..||.+|-...
T Consensus 83 ~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYaKF 122 (131)
T KOG1760|consen 83 QDQLEEKKETLEKEIEELESELESISARMDELKKVLYAKF 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777888888888888888888888888887665
No 208
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=30.18 E-value=2e+02 Score=24.33 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 324 LEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 324 LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
|+.+++.|+....+|...+..+++++..+...
T Consensus 91 l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 91 LKKRIEELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 209
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=29.85 E-value=83 Score=29.43 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhc
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQ-----VCSLKEQVMEHV 360 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreE-----v~~LKq~Ll~H~ 360 (376)
.+.++|+++..|..-...-......|++. +..||+-|..+.
T Consensus 37 EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~ 82 (162)
T PF04201_consen 37 ELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGW 82 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHh
Confidence 46666777776666655555555566655 456666666553
No 210
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=29.75 E-value=2.3e+02 Score=21.44 Aligned_cols=39 Identities=26% Similarity=0.237 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 322 ANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
++|...+...+.+|.+...++..|++=+..|=..|++|.
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~rVmE~~ 41 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDNLLVRVMEQT 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467778888888899988889999988887777777765
No 211
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.66 E-value=1.8e+02 Score=25.72 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVAS 343 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~ 343 (376)
+..|+.++..|+.+...|..++.
T Consensus 32 ~~~l~~el~~l~~~r~~l~~Eiv 54 (120)
T PF12325_consen 32 LASLQEELARLEAERDELREEIV 54 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 212
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=29.54 E-value=2.8e+02 Score=21.79 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 324 LEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 324 LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
+++++..++.....+...+..+..++..++.-
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444445555444444443
No 213
>PRK11239 hypothetical protein; Provisional
Probab=29.18 E-value=88 Score=30.47 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQ 348 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreE 348 (376)
++.|+++|..|+.+-.+|+..+..|..+
T Consensus 185 ~~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 185 DGDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555555543
No 214
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=29.10 E-value=4.3e+02 Score=23.78 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 309 AASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 309 AAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
+.....+...+.+.+|+.++.+...+-..++.++..+++...+|.+.+.++.
T Consensus 134 ~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 134 SLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555566656666666666666666666666666666655543
No 215
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.06 E-value=2.4e+02 Score=23.26 Aligned_cols=19 Identities=32% Similarity=0.336 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7086 339 ASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 339 ~~ei~~LreEv~~LKq~Ll 357 (376)
...+..++.++..|-+.+.
T Consensus 35 ~~~i~k~q~qlr~L~~kl~ 53 (72)
T COG2900 35 QLVIDKLQAQLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555544444
No 216
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.95 E-value=3.6e+02 Score=24.87 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEH 359 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H 359 (376)
-++.|.+++..|.-++..+..++..|+.|...|-+-.|..
T Consensus 145 ~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 145 ANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666666666655544
No 217
>PRK00846 hypothetical protein; Provisional
Probab=28.92 E-value=2.6e+02 Score=23.07 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 307 RVAASKCRKRKL-ERIANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 307 RvAAsKCRqRKK-e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
|+..-..|---. ..|+.|-+.|-....+...|+.++..|.+.+..+.
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444443333 35677777777777777777777777776555544
No 218
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=28.74 E-value=3.2e+02 Score=25.21 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=13.5
Q ss_pred hhhhHHHHhcCCCCCCCCCcceeccchhhH
Q psy7086 214 PEIEKFIMQNVSSNQTPTPTQVLFSTNIME 243 (376)
Q Consensus 214 PELErliiq~~G~ttTPTPsq~~~p~~vt~ 243 (376)
-|||+||=. -|- -.-..+.|+.|.-
T Consensus 10 ~EfE~lId~-~G~----e~v~~LmP~VV~v 34 (158)
T PF09744_consen 10 KEFERLIDR-YGE----EAVKGLMPKVVRV 34 (158)
T ss_pred HHHHHHHHH-hCh----hHHHHHHHHHHHH
Confidence 588888744 332 1122377875443
No 219
>KOG0243|consensus
Probab=28.65 E-value=2.9e+02 Score=32.67 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhc
Q psy7086 314 RKRKLERIANLEERVKILKGENNELASVAS-------KLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 314 RqRKKe~I~~LE~kvk~Le~eN~eL~~ei~-------~LreEv~~LKq~Ll~H~ 360 (376)
++.+-+.|++|+.+++.++.+..++.+... .|.++...|+..|..-.
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~ 496 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKN 496 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788888888888888888877776 77777777777766443
No 220
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=28.65 E-value=1.4e+02 Score=24.33 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
+++++.+...+..+|..|..|+..|..
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 666667777777777777666666543
No 221
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=28.61 E-value=1.3e+02 Score=29.46 Aligned_cols=41 Identities=10% Similarity=0.159 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
..+|+.|+.+|..|..+++++.-+++.+.+.-..|-..|..
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999888876666655554
No 222
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=28.49 E-value=4.8e+02 Score=25.24 Aligned_cols=72 Identities=10% Similarity=0.127 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCC
Q psy7086 293 SQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQ-VCSLKEQVMEHVHNGC 364 (376)
Q Consensus 293 eqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreE-v~~LKq~Ll~H~~~gC 364 (376)
..+..|.+.+..+=..++.+|+..=+..|..+...-.....+-...-.....|.++ +..||..+..+.+|-|
T Consensus 167 ~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~l~ 239 (258)
T cd07655 167 PDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHRHLD 239 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445677777888889999999888888888877777777776666666666655 7788888888776644
No 223
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=28.32 E-value=1.9e+02 Score=27.99 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
++..||+.++.++.....+...+..|+..+..|...|
T Consensus 93 ~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki 129 (225)
T COG1842 93 EKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKI 129 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555544443
No 224
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=28.27 E-value=1.8e+02 Score=23.61 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
...+..++..++.+..+|..+...|+-|...|..
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4566677888888888888888888888877764
No 225
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=28.24 E-value=2.1e+02 Score=29.62 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 328 VKILKGENNELASVASKLKQQVCS 351 (376)
Q Consensus 328 vk~Le~eN~eL~~ei~~LreEv~~ 351 (376)
+-.|..||.+|+.++..|+.++..
T Consensus 59 y~~L~~EN~~Lk~Ena~L~~~l~~ 82 (337)
T PRK14872 59 ALVLETENFLLKERIALLEERLKS 82 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444433
No 226
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=28.09 E-value=3.6e+02 Score=22.55 Aligned_cols=50 Identities=28% Similarity=0.373 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy7086 306 NRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQ---QVCSLKEQV 356 (376)
Q Consensus 306 NRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~Lre---Ev~~LKq~L 356 (376)
|+.++.||=. =.+.+..|...++.|..+..+|..-+..+-+ +|..|-+.+
T Consensus 30 N~~~~~kY~~-~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v 82 (99)
T PF10046_consen 30 NKATSLKYKK-MKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTV 82 (99)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777733 2344555666666666655555444333332 555554443
No 227
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=27.98 E-value=2.5e+02 Score=22.77 Aligned_cols=37 Identities=32% Similarity=0.350 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
...|+.....-+.+|..|...|..|..+|..|-..+.
T Consensus 30 y~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 30 YADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666667888888888888888888776654
No 228
>KOG0250|consensus
Probab=27.91 E-value=3.8e+02 Score=31.89 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
.+.+++.+.|+.++.+|+..+..|+++...++..
T Consensus 397 ~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 397 EERENKLEQLKKEVEKLEEQINSLREELNEVKEK 430 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 229
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=27.81 E-value=20 Score=30.77 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLK 346 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~Lr 346 (376)
+..||..+..|+.+..+|+.+...|.
T Consensus 15 ~~~LE~~l~~l~~el~~L~~~l~eLe 40 (118)
T PF08286_consen 15 LSDLESELESLQSELEELKEELEELE 40 (118)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333
No 230
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=27.65 E-value=5.2e+02 Score=27.06 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 328 VKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 328 vk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
.+.+..+-.+|+.++..|.+++..+...+....
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777888888877777777765543
No 231
>PHA03065 Hypothetical protein; Provisional
Probab=27.58 E-value=2.1e+02 Score=30.72 Aligned_cols=42 Identities=33% Similarity=0.356 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy7086 307 RVAASKCRKRKLERIANLEERVKI-------LKGENNELASVASKLKQQ 348 (376)
Q Consensus 307 RvAAsKCRqRKKe~I~~LE~kvk~-------Le~eN~eL~~ei~~LreE 348 (376)
|.|-..+=+||++.|+.|+...+. .++...+++.+++.++=+
T Consensus 89 r~a~~~~~kRK~~ei~~l~~~i~~ld~~d~~yEEikt~~~lrI~Kl~F~ 137 (438)
T PHA03065 89 RKASKNTIKRKREEIEKLEDDIKNLDVDDEMYEEIKTDLELKIDKLSFQ 137 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 455555668999999999998763 345566677777665533
No 232
>PRK01156 chromosome segregation protein; Provisional
Probab=27.52 E-value=1.8e+02 Score=32.64 Aligned_cols=36 Identities=8% Similarity=0.198 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+++..+++.+..+..+|..++..++..+..|+..+.
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~ 447 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELSRNME 447 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555666666666666666666765433
No 233
>PHA02562 46 endonuclease subunit; Provisional
Probab=27.50 E-value=4.1e+02 Score=27.76 Aligned_cols=8 Identities=13% Similarity=0.322 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy7086 325 EERVKILK 332 (376)
Q Consensus 325 E~kvk~Le 332 (376)
+.++..|+
T Consensus 364 ~~ei~~l~ 371 (562)
T PHA02562 364 KAAIEELQ 371 (562)
T ss_pred HHHHHHHH
Confidence 33333333
No 234
>PRK11637 AmiB activator; Provisional
Probab=27.47 E-value=5.8e+02 Score=26.29 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 315 KRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 315 qRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
..+...+..|+.+.+..+.+..+|..+...|..++..++.
T Consensus 215 ~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 215 NERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556667766666666666666666666666666554
No 235
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=27.44 E-value=3.8e+02 Score=28.23 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 304 QRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 304 eRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
+.+|+.-.+..+|-+++.+.|++....+..+..++..++.....++..++..|..
T Consensus 313 ~~~~~~k~~~~~ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~ 367 (373)
T COG5019 313 EEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEK 367 (373)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666667777777888888888888888888888888888888777777664
No 236
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=27.26 E-value=1.2e+02 Score=32.47 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 312 KCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 312 KCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
-.|.||+..+++||.-|+.-++|-.=-...++.-|.|...|+.+++.
T Consensus 343 ~~~~~kk~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~a 389 (446)
T PF07227_consen 343 FERQRKKPQIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIALA 389 (446)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999887777766677788888888888888764
No 237
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=27.24 E-value=2e+02 Score=23.55 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCC
Q psy7086 327 RVKILKGENNELASVASKLKQQVCSLKEQVME-HVHNG 363 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~-H~~~g 363 (376)
+++++-.+..+|..++..|++++..+....++ +..+|
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~~~~~~G 40 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDKETSYLEDTSPYG 40 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCC
Confidence 34455556666777777777777777777666 55444
No 238
>PF14282 FlxA: FlxA-like protein
Probab=27.23 E-value=1.9e+02 Score=24.60 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7086 336 NELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 336 ~eL~~ei~~LreEv~~LKq~ 355 (376)
..|..+|..|..++.+|...
T Consensus 54 q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 54 QLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 239
>KOG3856|consensus
Probab=26.86 E-value=1.8e+02 Score=26.51 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVH 361 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~ 361 (376)
..+++..++++|-...++|...+..|++|+..+.-..++|..
T Consensus 11 ~ye~~kaEL~elikkrqe~eetl~nLe~qIY~~EgsYle~ts 52 (135)
T KOG3856|consen 11 SYEDTKAELAELIKKRQELEETLANLERQIYAFEGSYLEDTS 52 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 456677788888888999999999999999999999999885
No 240
>KOG4370|consensus
Probab=26.80 E-value=1.6e+02 Score=31.74 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
+-...|+.+.+.|+..++.|...|..++.+|..||+++..
T Consensus 413 e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~ 452 (514)
T KOG4370|consen 413 EILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNL 452 (514)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888888888899999988754
No 241
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.65 E-value=1.6e+02 Score=31.92 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 326 ERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 326 ~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
.+.+.++.+..+|+.++..|++++..++..
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 555555555666666666666666555554
No 242
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=26.64 E-value=1.7e+02 Score=29.78 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQ---------------------QVCSLKEQV 356 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~Lre---------------------Ev~~LKq~L 356 (376)
|.++.+-+.++.+-+.|..+|+.++..+|+ |+.+||+.|
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvi 133 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVI 133 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 243
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.52 E-value=5.5e+02 Score=27.48 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGE 334 (376)
Q Consensus 321 I~~LE~kvk~Le~e 334 (376)
|.+++.++..++.+
T Consensus 68 lk~~e~~i~~~~~q 81 (420)
T COG4942 68 LKSLETEIASLEAQ 81 (420)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 244
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=26.31 E-value=2.3e+02 Score=25.02 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 334 ENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 334 eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+-.+|+.+|..|+++|..|++.+.
T Consensus 84 ~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 84 EMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 447888888888888888887763
No 245
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=26.16 E-value=3.3e+02 Score=24.84 Aligned_cols=11 Identities=9% Similarity=0.214 Sum_probs=5.1
Q ss_pred HHHHHHHHhhh
Q psy7086 250 KSFQDTYNELK 260 (376)
Q Consensus 250 ~gfv~al~~l~ 260 (376)
+..++++..+.
T Consensus 22 e~i~~~l~~~l 32 (177)
T PF07798_consen 22 EAIMKALREVL 32 (177)
T ss_pred HHHHHHHHHHH
Confidence 44455544443
No 246
>PHA03158 hypothetical protein; Provisional
Probab=26.15 E-value=64 Score=31.44 Aligned_cols=25 Identities=40% Similarity=0.486 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 308 VAASKCRKRKLERIANLEERVKILKG 333 (376)
Q Consensus 308 vAAsKCRqRKKe~I~~LE~kvk~Le~ 333 (376)
.||.|||+- -+++.+||+++++|+.
T Consensus 244 ka~kkc~~~-s~~~~~leeei~elek 268 (273)
T PHA03158 244 KAAKKCCKN-SEHEKELEEEIEELEK 268 (273)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHHH
Confidence 488899864 4678888888888775
No 247
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=25.99 E-value=2.4e+02 Score=28.70 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
.....|.++|..|+.+|.++++++...++-+.-|+.-|.
T Consensus 78 ~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~k 116 (389)
T PF06216_consen 78 NEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPVK 116 (389)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 344567777777777777777777777776666665543
No 248
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=25.87 E-value=1.7e+02 Score=29.20 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
..++.|+.+.+.+..+...+..++..+++++..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356666777777777767777777777777666654
No 249
>PLN02678 seryl-tRNA synthetase
Probab=25.78 E-value=5.5e+02 Score=27.42 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=35.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 298 KIERKRQRNRVAASKCRKRKLERIANLE------ERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 298 KreRRReRNRvAAsKCRqRKKe~I~~LE------~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
+..+++.........-|.++..-...+. +....+..+-.+|..++..|..++..+++.+.+..
T Consensus 37 ~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 37 ALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333 23445666667777777777777777777776544
No 250
>PRK02224 chromosome segregation protein; Provisional
Probab=25.77 E-value=5.1e+02 Score=28.92 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q psy7086 336 NELASVASKLKQQVCSLKEQVMEHVHNGCQI 366 (376)
Q Consensus 336 ~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l 366 (376)
..+...+..++..+..++..|..|. ||+
T Consensus 429 ~~~~~~~~~~~~~l~~~~~~l~~~~---Cp~ 456 (880)
T PRK02224 429 AELEATLRTARERVEEAEALLEAGK---CPE 456 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc---CCC
Confidence 3333344444444445544443333 665
No 251
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=25.73 E-value=1.8e+02 Score=25.56 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 329 KILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 329 k~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
..|+.+|..|.+|.+.|+-++.-|-++|.+
T Consensus 75 ~rlkkk~~~LeEENNlLklKievLLDMLte 104 (108)
T cd07429 75 LRLKKKNQQLEEENNLLKLKIEVLLDMLAE 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666555543
No 252
>KOG4010|consensus
Probab=25.67 E-value=99 Score=29.85 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 332 KGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 332 e~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
+.|..+|+.++..+++|+.-||+.|
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVL 67 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVL 67 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 253
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=25.60 E-value=5.7e+02 Score=27.03 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7086 326 ERVKILKGENNELASVASKLKQQVCSLKEQVMEH 359 (376)
Q Consensus 326 ~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H 359 (376)
++...+..+..+|..++..|++++..|++.|..-
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555556666677777777777777766433
No 254
>PRK14127 cell division protein GpsB; Provisional
Probab=25.54 E-value=1.6e+02 Score=25.82 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
..+.|..+...|+.+|..|+.++..++.++....
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4455555666666666666666666665555443
No 255
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=25.51 E-value=1.7e+02 Score=24.24 Aligned_cols=32 Identities=34% Similarity=0.438 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
++.|+...+.+..+..++..++..+...+.++
T Consensus 86 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 86 IKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666555554
No 256
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=25.51 E-value=5e+02 Score=27.72 Aligned_cols=13 Identities=8% Similarity=0.038 Sum_probs=6.7
Q ss_pred HhHHHHHHHHHhh
Q psy7086 80 AKSFQDTYNELKN 92 (376)
Q Consensus 80 a~gFv~al~~lh~ 92 (376)
.+.-++++++.++
T Consensus 64 lqPel~~iq~kyk 76 (429)
T PRK00247 64 IRPKRKALREEYK 76 (429)
T ss_pred cCHHHHHHHHHHh
Confidence 4445555555554
No 257
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=25.43 E-value=2.5e+02 Score=27.06 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
+....|...+..++..|..|..++..|+.++..+.+.
T Consensus 22 ~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqa 58 (193)
T PF14662_consen 22 DENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQA 58 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555433
No 258
>KOG4657|consensus
Probab=25.31 E-value=2.3e+02 Score=28.14 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 313 CRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 313 CRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
--.+|.++...++++++.+..+...|+..+..|.+|...+|..|.+..
T Consensus 80 L~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr 127 (246)
T KOG4657|consen 80 LKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKR 127 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 446777888888888888888888888888888888888877776554
No 259
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=25.24 E-value=2.3e+02 Score=28.53 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 304 QRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQ 348 (376)
Q Consensus 304 eRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreE 348 (376)
..+.|+.-|.+.-.-.++..||+++..++.++...++++..++++
T Consensus 150 l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 150 LQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 334444433333333366777777777777776666666655544
No 260
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=25.21 E-value=2.3e+02 Score=29.18 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHHHHHHh
Q psy7086 241 IMEEQELMAKSFQDTYNE 258 (376)
Q Consensus 241 vt~eqe~~a~gfv~al~~ 258 (376)
|..+.+.+...+-+.++.
T Consensus 52 i~~~A~~~~~~~~eYv~~ 69 (342)
T PF06632_consen 52 IRQRAKDWDMEVEEYVQE 69 (342)
T ss_dssp HHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHH
Confidence 333444444444444433
No 261
>PRK09343 prefoldin subunit beta; Provisional
Probab=25.18 E-value=3e+02 Score=23.92 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
-+++|+.+++.++.+...|..+...|+..+..+...|.+-.
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555555554433
No 262
>smart00340 HALZ homeobox associated leucin zipper.
Probab=25.15 E-value=1.4e+02 Score=22.50 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 328 VKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 328 vk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
.+-|+.--..|..+...|+.|+++||.+
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444445555555555555555543
No 263
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=25.13 E-value=7.2e+02 Score=25.09 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q psy7086 336 NELASVASKLKQQVCSLKEQVMEHVHNGCQIN 367 (376)
Q Consensus 336 ~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l~ 367 (376)
.+|..+-..|...+..++..|..-. ||+++
T Consensus 238 ~~l~~~~~~l~k~~~~~~sKV~kf~--~~sl~ 267 (269)
T PF05278_consen 238 GELEMESTRLSKTIKSIKSKVEKFH--GKSLL 267 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCccc
Confidence 3333333344444444555555443 66664
No 264
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=25.11 E-value=4.9e+02 Score=27.09 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7086 324 LEERVKILKGENNELASVASKLKQQVCSLKEQVMEH 359 (376)
Q Consensus 324 LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H 359 (376)
....+..+.....+|..++..|.+++..|+..+..+
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666666777778888888888888888888777
No 265
>KOG1318|consensus
Probab=24.64 E-value=98 Score=32.80 Aligned_cols=45 Identities=33% Similarity=0.325 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 316 RKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 316 RKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
+..+++.+++.+.+.|+..|.+|..+++.|+.+.......+..|.
T Consensus 287 q~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~~~~~~~~~ 331 (411)
T KOG1318|consen 287 QTLQRARELENRQKKLESTNQELALRIEELKSEAGRHGLQVEPSK 331 (411)
T ss_pred HHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 444567888889999999999999999999998877776665544
No 266
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.54 E-value=2.5e+02 Score=28.12 Aligned_cols=14 Identities=14% Similarity=0.321 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhh
Q psy7086 246 ELMAKSFQDTYNEL 259 (376)
Q Consensus 246 e~~a~gfv~al~~l 259 (376)
...|+.|.++|...
T Consensus 72 ReLA~kf~eeLrg~ 85 (290)
T COG4026 72 RELAEKFFEELRGM 85 (290)
T ss_pred HHHHHHHHHHHHHh
Confidence 45788888888664
No 267
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=24.17 E-value=2.9e+02 Score=23.30 Aligned_cols=42 Identities=14% Similarity=0.227 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
..+..|..-++.|+.+|..|..++..|-+-..+-+..+.+..
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457778888888888888888888888777777776666554
No 268
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=23.93 E-value=1.4e+02 Score=23.74 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy7086 327 RVKILKGENNELASVASKLKQQVCSLKEQVMEHVH 361 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~ 361 (376)
+++++-.+.++|++.+-.|++|+..+|..+.....
T Consensus 4 ELr~VL~ERNeLK~~v~~leEEL~~yk~~~~~~~~ 38 (60)
T PF11461_consen 4 ELREVLQERNELKARVFLLEEELAYYKSELLPDEE 38 (60)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccc
Confidence 35566678889999999999999999988776553
No 269
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=23.79 E-value=94 Score=22.99 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVA 342 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei 342 (376)
+|.+|+.++..|..+|..|+..+
T Consensus 22 ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 22 KIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHh
Confidence 45555555555555555555443
No 270
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses.
Probab=23.76 E-value=2.5e+02 Score=30.03 Aligned_cols=84 Identities=29% Similarity=0.392 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcCCCCCCCc-ccccCCCCCCCCCCCCCCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy7086 240 NIMEEQELMAKSFQDTYNELKNNTSDSSSM-LIKDEPAHSIASTSPPMSPIDMESQERIKIERKRQRNRVAASKCRKRKL 318 (376)
Q Consensus 240 ~vt~eqe~~a~gfv~al~~l~~~~~~~~~~-~ikeEPq~vp~~~spp~sPiD~eeqE~iKreRRReRNRvAAsKCRqRKK 318 (376)
+|+++-| +...|.+.++..++.+ |.+ .+-+. .-|+.-+..| -.| |-|-..+-+||+
T Consensus 42 sv~s~~e-L~~~~~~~i~~w~~~~---~~VtlFvDR------------G~I~iK~~lR------eKR-r~a~k~~~~RK~ 98 (425)
T PF04599_consen 42 SVNSLDE-LRNSFEEYIQQWIKNN---GKVTLFVDR------------GSINIKEPLR------EKR-RKALKNTIKRKR 98 (425)
T ss_pred hhCCHHH-HHHHHHHHHHHHHhcC---CeEEEEEec------------CccchhhHHH------HHH-HHHHHHHHHHHH
Confidence 4555544 6668888888886533 333 22111 1233323332 222 667777778999
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILK-------GENNELASVASKLK 346 (376)
Q Consensus 319 e~I~~LE~kvk~Le-------~eN~eL~~ei~~Lr 346 (376)
+.|+.|+...+.|. ....++..++..++
T Consensus 99 ~~i~~l~~~~~~ld~~d~~yeEikt~~~lki~K~~ 133 (425)
T PF04599_consen 99 EEIENLEDCIKNLDVDDEFYEEIKTDLELKIQKLS 133 (425)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 99999988887543 34455555555443
No 271
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=23.73 E-value=2.6e+02 Score=28.40 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 328 VKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 328 vk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
++.++.....|+.++..|++++.+...+|..|.
T Consensus 142 lEr~K~~~d~L~~e~~~Lre~L~~rdeli~khG 174 (302)
T PF09738_consen 142 LERQKRAHDSLREELDELREQLKQRDELIEKHG 174 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 455666778888888999999999999999996
No 272
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.56 E-value=4.7e+02 Score=29.50 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
+.-+.+..+.++|+.|...|+.++....+++..|+..+
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555777888888888888888888888888888766
No 273
>PRK06835 DNA replication protein DnaC; Validated
Probab=23.33 E-value=3.1e+02 Score=27.77 Aligned_cols=53 Identities=19% Similarity=0.414 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
Q psy7086 300 ERKRQRNRVAASKCRK---RKLERIANLEERVKIL---------------KGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 300 eRRReRNRvAAsKCRq---RKKe~I~~LE~kvk~L---------------e~eN~eL~~ei~~LreEv~~L 352 (376)
+++|.+|+..+.+-|+ +|.-+|.++++++..+ +....+|+.++..|+++...|
T Consensus 14 ~~~r~~~~~~~~~r~~e~~~~~P~~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~l 84 (329)
T PRK06835 14 EKRRDKEELELKNRKEEVYKKIPEIAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVKKAEL 84 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH
No 274
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=23.31 E-value=4e+02 Score=31.19 Aligned_cols=75 Identities=21% Similarity=0.411 Sum_probs=47.5
Q ss_pred CcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccc
Q psy7086 290 DMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQINVV 369 (376)
Q Consensus 290 D~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l~~~ 369 (376)
|....|+.+.+|--.--++.-.|.|+ ..+|..+--.+.+-..|...+..+......++.+|....-.+|-+|..
T Consensus 1050 D~gAeeRA~~RRDELh~~Lst~RsRr------~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~AK~~WC~VmRl 1123 (1480)
T COG3096 1050 DSGAEERARIRRDELHAQLSTNRSRR------NQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRM 1123 (1480)
T ss_pred CcchHHHHHHHHHHHHHHHhccHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhhhhh
Confidence 44455554443333444555554443 234555666667777777777778888888888888777788988854
Q ss_pred c
Q psy7086 370 M 370 (376)
Q Consensus 370 ~ 370 (376)
+
T Consensus 1124 ~ 1124 (1480)
T COG3096 1124 V 1124 (1480)
T ss_pred h
Confidence 4
No 275
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.18 E-value=3.1e+02 Score=26.24 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 330 ILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 330 ~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
.++.+..+.+.+++.++.+...|.+.+
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444455555555555555555544
No 276
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=23.02 E-value=28 Score=34.22 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
-.|.+|...|..|..+|..|+.++..|+.|...|
T Consensus 129 T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 129 TKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888999999999999999999998888
No 277
>PRK12704 phosphodiesterase; Provisional
Probab=22.90 E-value=7.1e+02 Score=26.98 Aligned_cols=7 Identities=29% Similarity=0.382 Sum_probs=2.7
Q ss_pred hhHHHHH
Q psy7086 305 RNRVAAS 311 (376)
Q Consensus 305 RNRvAAs 311 (376)
++|+...
T Consensus 81 e~~L~qr 87 (520)
T PRK12704 81 RNELQKL 87 (520)
T ss_pred HHHHHHH
Confidence 3343333
No 278
>smart00340 HALZ homeobox associated leucin zipper.
Probab=22.89 E-value=2.3e+02 Score=21.33 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 324 LEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 324 LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
|..=.+.|+.+|..|..++..||.
T Consensus 10 LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 10 LKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567788888888888888875
No 279
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.86 E-value=7.9e+02 Score=24.91 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=15.1
Q ss_pred CCcCCcccCChhhhHHHHhc
Q psy7086 204 PDLNKLNFTTPEIEKFIMQN 223 (376)
Q Consensus 204 pDl~~LKLaSPELErliiq~ 223 (376)
|=|-+..++.-||.+=|.++
T Consensus 63 P~LElY~~sC~EL~~~I~eg 82 (312)
T smart00787 63 PLLELYQFSCKELKKYISEG 82 (312)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 54555688888998888777
No 280
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=22.68 E-value=3.5e+02 Score=23.86 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASKL--KQQVCSLK 353 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~L--reEv~~LK 353 (376)
..+++.++.+.+.+..++.+|..+++.| ..++..|.
T Consensus 41 ~~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~Le 78 (109)
T PF11690_consen 41 YDFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRALE 78 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4788888888888888999998888888 66655553
No 281
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.49 E-value=2e+02 Score=30.66 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=37.0
Q ss_pred HHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 302 KRQRNRVAASKCRKRKL--ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 302 RReRNRvAAsKCRqRKK--e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
+++||.++..=-|..++ +.+..|..+++.+..+..++..+...+..++..+-..|
T Consensus 49 ~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~i 105 (429)
T COG0172 49 QAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTI 105 (429)
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhC
Confidence 45778777665543333 25678888888888888888887777776665554433
No 282
>PRK11239 hypothetical protein; Provisional
Probab=22.49 E-value=1.4e+02 Score=29.13 Aligned_cols=30 Identities=23% Similarity=0.150 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 326 ERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 326 ~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
.....|+.+...|+.++..|+.++.+|..+
T Consensus 183 ~~~~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 183 AVDGDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666666555553
No 283
>PHA01750 hypothetical protein
Probab=22.38 E-value=3.9e+02 Score=21.98 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 324 LEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 324 LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
.+.++..|..+.+++..+...|.+++..+|..+.
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 3556777777888888888888888888887763
No 284
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.37 E-value=55 Score=28.69 Aligned_cols=6 Identities=17% Similarity=0.573 Sum_probs=2.5
Q ss_pred HHhhcC
Q psy7086 356 VMEHVH 361 (376)
Q Consensus 356 Ll~H~~ 361 (376)
|.+|..
T Consensus 69 l~~Hla 74 (128)
T PF06295_consen 69 LYQHLA 74 (128)
T ss_pred HHHHHH
Confidence 444443
No 285
>PRK09039 hypothetical protein; Validated
Probab=22.34 E-value=4.5e+02 Score=26.73 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=20.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 302 KRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 302 RReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
.+.+..|+|-|.. +..|+..+...+.+..+...++..|..
T Consensus 140 ~~L~~qI~aLr~Q------la~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 140 ELLNQQIAALRRQ------LAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666554 444444444444444444444444433
No 286
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=22.30 E-value=4e+02 Score=25.23 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 325 EERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 325 E~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
++-+...+....++..++..|++++...++
T Consensus 145 ~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 145 QELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344445556666666666666665543
No 287
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=22.20 E-value=7.2e+02 Score=24.03 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcC
Q psy7086 294 QERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQ-VCSLKEQVMEHVH 361 (376)
Q Consensus 294 qE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreE-v~~LKq~Ll~H~~ 361 (376)
++..|...|.+|=+.++.+++.+=...+..|+.--...+.+-..--.....|.+| +.-||..|-.|.+
T Consensus 154 ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~~~c~~fq~lEeeRi~f~k~~lw~~~n 222 (240)
T cd07672 154 KQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHVKACEFFEKQECERINFFRNAVWTHVN 222 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334677788888999999999999999999888888888877666667777665 6778888888876
No 288
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.10 E-value=6.5e+02 Score=23.50 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 334 ENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 334 eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
+..++..++..|+.++..|+..|....
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666433
No 289
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=22.08 E-value=2.9e+02 Score=22.82 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKL 345 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~L 345 (376)
++.++.++..++.+...+...++.+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 93 LEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 290
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.01 E-value=5.6e+02 Score=22.90 Aligned_cols=38 Identities=13% Similarity=0.393 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
.+|+.|..++++..+-....+.++..+++.+.+++..+
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv 105 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDV 105 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45556666666555555555555555555555554443
No 291
>PHA02109 hypothetical protein
Probab=22.01 E-value=1.8e+02 Score=28.03 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 334 ENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 334 eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
+..+|...++.|.+|.++||..|+.
T Consensus 194 ~I~~L~~ki~~LS~E~~Q~~~Ki~N 218 (233)
T PHA02109 194 QISELTIKLEALSDEACQVKHKILN 218 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777766654
No 292
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.97 E-value=3e+02 Score=23.80 Aligned_cols=7 Identities=57% Similarity=0.805 Sum_probs=2.7
Q ss_pred HHHHhhh
Q psy7086 254 DTYNELK 260 (376)
Q Consensus 254 ~al~~l~ 260 (376)
++|..++
T Consensus 44 e~l~~l~ 50 (140)
T PRK03947 44 ETLEELK 50 (140)
T ss_pred HHHHhhc
Confidence 3334444
No 293
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=21.93 E-value=2.5e+02 Score=26.20 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 312 KCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 312 KCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
-||+|-...+..+|++.+.|.....+|..-..-.|.+|..++..|....
T Consensus 49 eVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vN 97 (159)
T PF04949_consen 49 EVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVN 97 (159)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 3666666777788888888888888888777777888888877765443
No 294
>PRK15396 murein lipoprotein; Provisional
Probab=21.88 E-value=3.2e+02 Score=22.58 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
.++.|..+|..|..+-..|...+..++..+..-|.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~ 60 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKD 60 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666655544443
No 295
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=21.87 E-value=6.1e+02 Score=23.16 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 323 NLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 323 ~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
.||+.+..+..+..++..+++.+++++..|+..+..
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRN 78 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688888888888888888888888888888887763
No 296
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=21.82 E-value=2.8e+02 Score=26.02 Aligned_cols=6 Identities=17% Similarity=0.479 Sum_probs=2.6
Q ss_pred CcchHH
Q psy7086 290 DMESQE 295 (376)
Q Consensus 290 D~eeqE 295 (376)
++.+.|
T Consensus 25 ~LsEeE 30 (162)
T PF04201_consen 25 GLSEEE 30 (162)
T ss_pred cCCHHH
Confidence 444444
No 297
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=21.82 E-value=1e+02 Score=22.76 Aligned_cols=30 Identities=33% Similarity=0.309 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 327 RVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
.-..+..+..+|+.++..|..|...|+..+
T Consensus 15 ~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 15 RNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------HHHHHHHHHHHHHHH
T ss_pred HhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 333444444455555555555555555544
No 298
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=21.78 E-value=2e+02 Score=23.12 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCS 351 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~ 351 (376)
..++.++++++.+..|-.++..+.+.+.+.+..
T Consensus 33 ~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~ 65 (90)
T PF06103_consen 33 KTIDTLQEQVDPITKEINDLLHNTNELLEDVNE 65 (90)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544444443
No 299
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=21.75 E-value=4.7e+02 Score=26.70 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=15.2
Q ss_pred CCCCCcceeccchhhHHHHHHHHHHHHHH
Q psy7086 228 QTPTPTQVLFSTNIMEEQELMAKSFQDTY 256 (376)
Q Consensus 228 tTPTPsq~~~p~~vt~eqe~~a~gfv~al 256 (376)
..|.||+.|=|. ..+=|+..++-+....
T Consensus 179 e~Ph~G~SYNP~-~edhqelL~~a~~~E~ 206 (387)
T PF07767_consen 179 EVPHPGQSYNPS-FEDHQELLAKAVEKEK 206 (387)
T ss_pred ccCCCCCCCCcC-HHHHHHHHHHHHHHHH
Confidence 567777765553 4555555554444333
No 300
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.72 E-value=2.6e+02 Score=23.72 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
..+++.|+..++.++....++..++..+...+.++
T Consensus 93 ~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 93 DKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 301
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=21.68 E-value=3e+02 Score=23.58 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVASKLKQQ 348 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~LreE 348 (376)
..+..+.+.++....++..++..|++|
T Consensus 90 ~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 90 QELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444444433
No 302
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=21.56 E-value=5.8e+02 Score=24.70 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 303 RQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 303 ReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
|+|=|--|+---+=-+--+.-+..+|..+..+..+|......|-.|...||.+.+
T Consensus 85 RqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl 139 (195)
T PF10226_consen 85 RQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCL 139 (195)
T ss_pred HHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
No 303
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=21.41 E-value=3.3e+02 Score=26.99 Aligned_cols=14 Identities=36% Similarity=0.285 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q psy7086 327 RVKILKGENNELAS 340 (376)
Q Consensus 327 kvk~Le~eN~eL~~ 340 (376)
...+++.||.+|+.
T Consensus 92 ~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 92 LTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHH
Confidence 33335555555544
No 304
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=21.33 E-value=3.3e+02 Score=27.87 Aligned_cols=42 Identities=38% Similarity=0.444 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 314 RKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 314 RqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
|++..+..++|+.+.+.|..+|...+..+..|...+..|+..
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a 144 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKA 144 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455556677777777777777777777777777766666554
No 305
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=21.24 E-value=2.3e+02 Score=28.38 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy7086 315 KRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHN 362 (376)
Q Consensus 315 qRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~ 362 (376)
+||+..+++.+.+++.|..-.=.-..|.+.|+.|+..|-+.-+.+..|
T Consensus 200 ekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRN 247 (267)
T PF10234_consen 200 EKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRN 247 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666666655555556666666666665555544443
No 306
>KOG0483|consensus
Probab=21.21 E-value=1.5e+02 Score=28.36 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+...||...+.|+.+-..|+.+...|+.++..|+..+.
T Consensus 106 K~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~ 143 (198)
T KOG0483|consen 106 KTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELS 143 (198)
T ss_pred cchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 34455555666666555555555555555555555554
No 307
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.16 E-value=2.7e+02 Score=27.92 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 310 ASKCRKRKLERIANLEERVKILKGENNELASVA 342 (376)
Q Consensus 310 AsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei 342 (376)
...-+.-.++++.+++.+++.|+.+..+|+..|
T Consensus 64 ~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 64 IQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555555554444433
No 308
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.15 E-value=92 Score=33.66 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVA 342 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei 342 (376)
+|++|+.++++|+++..+|..++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHHHHHHHHHHHHHhhccccccc
Confidence 44444444444444444433333
No 309
>PRK10722 hypothetical protein; Provisional
Probab=21.12 E-value=3.3e+02 Score=27.21 Aligned_cols=48 Identities=15% Similarity=0.206 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 308 VAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 308 vAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+|+.+.|-.|.+.- -+.+++.|..++.+|..+++.+.+.+..|.++--
T Consensus 160 LaeEr~Ry~rLQq~--sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIER 207 (247)
T PRK10722 160 LAEERQRYQKLQQS--SDSELDALRQQQQRLQYQLELTTRKLENLTDIER 207 (247)
T ss_pred HHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666655433 3578888888888888888888888888887643
No 310
>PF14645 Chibby: Chibby family
Probab=20.93 E-value=2.4e+02 Score=24.68 Aligned_cols=17 Identities=35% Similarity=0.266 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy7086 329 KILKGENNELASVASKL 345 (376)
Q Consensus 329 k~Le~eN~eL~~ei~~L 345 (376)
+.|+.||.-|+-+++-|
T Consensus 81 ~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 81 QQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 311
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=20.79 E-value=6.7e+02 Score=24.82 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=34.4
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q psy7086 307 RVAASKCRKR----KLERIANLEERVKILKGEN--NELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 307 RvAAsKCRqR----KKe~I~~LE~kvk~Le~eN--~eL~~ei~~LreEv~~LKq~Ll 357 (376)
..++..+|.| +++.+..|+++++.++.+. ..+..++..++++.....+.+.
T Consensus 81 ~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~~~ml~evK 137 (230)
T PF03904_consen 81 EETTKDFIDKTEKVHNDFQDILQDELKDVDTDELKNIAQNEIKKVREENKSMLQEVK 137 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788876 5678888888888887543 3455566667776666555543
No 312
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=20.21 E-value=4.2e+02 Score=21.81 Aligned_cols=38 Identities=8% Similarity=0.363 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEH 359 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H 359 (376)
..+..+..+|-+|+....+++. ...+|+..||..|...
T Consensus 39 ~Em~~ir~~v~eLE~~h~kmK~---~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 39 QEMQQIRQKVYELEQAHRKMKQ---QYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Confidence 4566666777777777777765 4577888888877654
No 313
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=20.16 E-value=2.7e+02 Score=24.34 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 325 EERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 325 E~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
+.++..++.+-.++..++..|..++..+.+.
T Consensus 54 ~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~ 84 (150)
T PF07200_consen 54 EPELEELRSQLQELYEELKELESEYQEKEQQ 84 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 314
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.00 E-value=3.7e+02 Score=24.93 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
..|+..+..+...-..|+..+..|+..+..++
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443333333
Done!