Query psy7086
Match_columns 376
No_of_seqs 240 out of 926
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 17:45:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jnm_A Proto-oncogene C-JUN; B 99.7 1.1E-16 3.7E-21 122.1 6.7 62 298-359 1-62 (62)
2 2wt7_A Proto-oncogene protein 99.7 5.7E-16 1.9E-20 118.7 10.0 62 298-359 2-63 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.6 2.1E-15 7.1E-20 114.6 8.9 60 298-357 1-60 (61)
4 1ci6_A Transcription factor AT 99.5 2.6E-14 9E-19 109.7 8.4 61 298-358 2-62 (63)
5 2dgc_A Protein (GCN4); basic d 99.3 4.7E-12 1.6E-16 97.4 6.6 52 299-350 10-61 (63)
6 1gu4_A CAAT/enhancer binding p 99.3 1.3E-11 4.4E-16 98.9 8.2 71 287-360 7-77 (78)
7 1hjb_A Ccaat/enhancer binding 99.2 6.4E-11 2.2E-15 96.6 10.2 72 287-361 7-78 (87)
8 1dh3_A Transcription factor CR 99.1 7.5E-11 2.6E-15 88.5 5.4 53 298-350 1-53 (55)
9 1gd2_E Transcription factor PA 98.7 4.5E-08 1.5E-12 77.0 8.4 58 301-358 11-68 (70)
10 2wt7_B Transcription factor MA 98.7 1.3E-07 4.5E-12 77.6 10.6 70 289-358 18-87 (90)
11 3a5t_A Transcription factor MA 98.6 3.4E-09 1.2E-13 89.4 -1.7 67 289-355 28-94 (107)
12 1skn_P DNA-binding domain of S 98.2 6.3E-07 2.2E-11 73.6 3.1 38 288-325 52-89 (92)
13 2c9l_Y EB1, zebra, BZLF1 trans 97.5 0.00043 1.5E-08 52.5 7.6 43 299-341 2-44 (63)
14 2oqq_A Transcription factor HY 97.5 0.00029 9.9E-09 50.4 6.2 40 318-357 2-41 (42)
15 2kz5_A Transcription factor NF 97.4 7E-06 2.4E-10 67.4 -3.2 34 288-321 56-89 (91)
16 2lz1_A Nuclear factor erythroi 96.0 0.0001 3.6E-09 60.4 -6.2 32 289-320 57-88 (90)
17 1kd8_B GABH BLL, GCN4 acid bas 94.6 0.065 2.2E-06 37.2 5.1 33 319-351 1-33 (36)
18 2oxj_A Hybrid alpha/beta pepti 94.0 0.073 2.5E-06 36.5 4.4 29 319-347 1-29 (34)
19 1kd8_A GABH AIV, GCN4 acid bas 93.8 0.068 2.3E-06 37.1 4.0 32 319-350 1-32 (36)
20 3m48_A General control protein 93.6 0.073 2.5E-06 36.3 3.7 28 320-347 1-28 (33)
21 3c3f_A Alpha/beta peptide with 93.2 0.13 4.3E-06 35.3 4.4 29 319-347 1-29 (34)
22 2bni_A General control protein 92.2 0.16 5.5E-06 34.8 3.9 29 319-347 1-29 (34)
23 2wq1_A General control protein 92.1 0.21 7.3E-06 34.0 4.4 28 320-347 1-28 (33)
24 3c3g_A Alpha/beta peptide with 92.1 0.21 7.3E-06 34.0 4.4 28 320-347 1-28 (33)
25 2hy6_A General control protein 91.7 0.23 7.8E-06 34.1 4.2 29 320-348 2-30 (34)
26 2yy0_A C-MYC-binding protein; 91.4 0.33 1.1E-05 36.0 5.2 34 326-359 19-52 (53)
27 1uo4_A General control protein 91.3 0.23 7.8E-06 34.1 3.9 28 320-347 2-29 (34)
28 3m91_A Proteasome-associated A 88.7 1.3 4.6E-05 32.6 6.5 41 318-358 8-48 (51)
29 2r2v_A GCN4 leucine zipper; co 86.3 0.92 3.2E-05 31.1 4.0 28 320-347 2-29 (34)
30 2jee_A YIIU; FTSZ, septum, coi 85.2 2.5 8.4E-05 34.1 6.8 39 318-356 19-64 (81)
31 3nmd_A CGMP dependent protein 84.1 1.3 4.4E-05 35.0 4.6 39 316-354 30-68 (72)
32 3he5_B Synzip2; heterodimeric 83.4 3.6 0.00012 29.9 6.3 40 321-360 12-51 (52)
33 3ra3_A P1C; coiled coil domain 82.0 0.65 2.2E-05 30.1 1.7 27 328-354 2-28 (28)
34 1nkp_B MAX protein, MYC proto- 81.3 1.8 6.3E-05 33.7 4.6 32 329-360 50-81 (83)
35 1nlw_A MAD protein, MAX dimeri 81.1 2.8 9.5E-05 33.0 5.6 35 318-352 46-80 (80)
36 3s4r_A Vimentin; alpha-helix, 78.0 4.1 0.00014 32.9 5.8 40 317-356 54-93 (93)
37 2dgc_A Protein (GCN4); basic d 76.5 7.3 0.00025 29.4 6.4 34 324-357 28-61 (63)
38 1nkp_A C-MYC, MYC proto-oncoge 76.3 5.3 0.00018 31.8 5.9 36 318-353 51-86 (88)
39 1nkp_B MAX protein, MYC proto- 76.2 9.5 0.00033 29.6 7.3 36 318-353 46-81 (83)
40 1kd8_B GABH BLL, GCN4 acid bas 75.5 4.9 0.00017 27.9 4.6 32 327-358 2-33 (36)
41 3m9b_A Proteasome-associated A 75.3 3.4 0.00012 39.4 5.2 44 318-361 53-96 (251)
42 3m48_A General control protein 75.1 2.7 9.4E-05 28.6 3.2 31 328-358 2-32 (33)
43 1gd2_E Transcription factor PA 75.0 3.1 0.0001 32.4 4.0 35 319-353 36-70 (70)
44 3c3f_A Alpha/beta peptide with 74.4 5 0.00017 27.5 4.4 31 327-357 2-32 (34)
45 2oxj_A Hybrid alpha/beta pepti 73.0 5.7 0.00019 27.2 4.4 31 327-357 2-32 (34)
46 3oja_B Anopheles plasmodium-re 73.0 21 0.00072 35.6 10.7 41 316-356 534-574 (597)
47 3c3g_A Alpha/beta peptide with 72.0 6.2 0.00021 26.9 4.4 30 328-357 2-31 (33)
48 3ra3_B P2F; coiled coil domain 71.4 3.2 0.00011 26.8 2.8 26 328-353 2-27 (28)
49 2wq1_A General control protein 71.1 6.7 0.00023 26.7 4.4 30 328-357 2-31 (33)
50 4dzn_A Coiled-coil peptide CC- 70.9 8.7 0.0003 25.7 4.8 27 328-354 4-30 (33)
51 3mq7_A Bone marrow stromal ant 70.6 22 0.00074 30.5 8.5 40 319-358 71-110 (121)
52 2wt7_A Proto-oncogene protein 69.7 27 0.00093 26.0 8.1 31 327-357 24-54 (63)
53 1kd8_A GABH AIV, GCN4 acid bas 69.3 5.9 0.0002 27.5 3.9 32 327-358 2-33 (36)
54 3vmx_A Voltage-gated hydrogen 68.8 20 0.00069 26.3 6.9 41 320-360 5-45 (48)
55 1hjb_A Ccaat/enhancer binding 68.6 17 0.00057 29.3 7.2 42 318-359 42-83 (87)
56 1jnm_A Proto-oncogene C-JUN; B 68.6 24 0.00081 26.1 7.5 32 326-357 22-53 (62)
57 3he5_A Synzip1; heterodimeric 67.4 20 0.00067 25.8 6.4 37 320-356 4-47 (49)
58 1l8d_A DNA double-strand break 67.1 12 0.00042 30.0 6.2 48 320-367 4-53 (112)
59 1uo4_A General control protein 66.7 6.7 0.00023 26.9 3.7 31 327-357 2-32 (34)
60 1wt6_A Myotonin-protein kinase 66.5 49 0.0017 26.6 10.3 36 318-353 37-72 (81)
61 2hy6_A General control protein 66.4 8.8 0.0003 26.3 4.2 31 327-357 2-32 (34)
62 2bni_A General control protein 64.5 7 0.00024 26.8 3.5 31 327-357 2-32 (34)
63 2wuj_A Septum site-determining 63.1 7.2 0.00025 28.8 3.7 30 319-348 27-56 (57)
64 1fmh_A General control protein 62.7 16 0.00054 24.4 4.8 28 321-348 3-30 (33)
65 1a93_B MAX protein, coiled coi 62.2 11 0.00036 25.9 4.0 26 320-345 8-33 (34)
66 3efg_A Protein SLYX homolog; x 62.0 22 0.00076 27.9 6.5 39 320-358 15-60 (78)
67 1deb_A APC protein, adenomatou 61.8 25 0.00085 26.2 6.3 36 322-357 6-48 (54)
68 3oja_B Anopheles plasmodium-re 61.5 35 0.0012 34.0 9.6 36 320-355 545-580 (597)
69 3hnw_A Uncharacterized protein 61.4 21 0.00071 30.8 6.8 41 319-359 96-136 (138)
70 2v71_A Nuclear distribution pr 61.3 20 0.00067 32.8 7.0 49 312-360 35-83 (189)
71 3s4r_A Vimentin; alpha-helix, 61.0 24 0.00082 28.4 6.8 21 325-345 22-42 (93)
72 3s9g_A Protein hexim1; cyclin 60.7 34 0.0012 28.6 7.7 51 294-348 37-94 (104)
73 4ati_A MITF, microphthalmia-as 60.3 11 0.00036 31.7 4.7 38 290-327 15-52 (118)
74 1go4_E MAD1 (mitotic arrest de 59.3 17 0.00058 30.2 5.7 28 320-347 13-40 (100)
75 1dip_A Delta-sleep-inducing pe 59.2 9.6 0.00033 30.4 3.9 30 326-355 15-44 (78)
76 1ci6_A Transcription factor AT 57.0 25 0.00085 26.3 5.8 32 319-350 30-61 (63)
77 2r2v_A GCN4 leucine zipper; co 56.8 18 0.00061 24.8 4.4 31 327-357 2-32 (34)
78 1t2k_D Cyclic-AMP-dependent tr 56.7 55 0.0019 23.9 7.9 29 328-356 24-52 (61)
79 1lwu_C Fibrinogen gamma chain; 55.8 28 0.00094 34.0 7.4 38 319-356 12-49 (323)
80 4etp_A Kinesin-like protein KA 55.5 15 0.00053 36.4 5.7 41 316-356 21-61 (403)
81 1dh3_A Transcription factor CR 54.8 32 0.0011 25.2 6.0 31 326-356 22-52 (55)
82 1am9_A Srebp-1A, protein (ster 53.7 20 0.00068 28.0 5.0 8 322-329 53-60 (82)
83 1go4_E MAD1 (mitotic arrest de 53.4 28 0.00096 28.8 6.1 39 326-364 12-50 (100)
84 2zqm_A Prefoldin beta subunit 52.8 44 0.0015 26.5 7.1 38 321-358 72-109 (117)
85 2jee_A YIIU; FTSZ, septum, coi 52.4 42 0.0014 26.9 6.7 19 338-356 53-71 (81)
86 1jcd_A Major outer membrane li 52.2 45 0.0016 24.6 6.4 36 320-355 5-40 (52)
87 3ol1_A Vimentin; structural ge 51.8 39 0.0013 28.1 6.8 49 309-357 31-79 (119)
88 2xdj_A Uncharacterized protein 51.7 44 0.0015 26.6 6.8 35 321-355 22-56 (83)
89 2fxo_A Myosin heavy chain, car 51.2 36 0.0012 28.5 6.5 40 319-358 83-122 (129)
90 2akf_A Coronin-1A; coiled coil 51.1 18 0.00062 24.2 3.6 28 322-349 2-29 (32)
91 1fxk_A Prefoldin; archaeal pro 50.4 51 0.0017 25.8 7.0 37 321-357 67-103 (107)
92 2yy0_A C-MYC-binding protein; 50.4 28 0.00095 25.5 5.0 28 321-348 21-48 (53)
93 2zxx_A Geminin; coiled-coil, c 50.4 73 0.0025 25.4 7.8 30 317-346 39-68 (79)
94 3nmd_A CGMP dependent protein 49.4 21 0.00072 28.1 4.4 30 317-346 38-67 (72)
95 1p9i_A Cortexillin I/GCN4 hybr 49.4 26 0.00089 23.1 4.1 28 322-349 2-29 (31)
96 1nlw_A MAD protein, MAX dimeri 48.1 48 0.0016 25.9 6.4 40 318-357 39-78 (80)
97 1zxa_A CGMP-dependent protein 48.1 26 0.00089 27.2 4.7 31 316-346 22-52 (67)
98 3swk_A Vimentin; cytoskeleton, 48.1 35 0.0012 27.0 5.7 36 321-356 2-37 (86)
99 1dip_A Delta-sleep-inducing pe 47.8 14 0.00048 29.4 3.2 22 319-340 22-43 (78)
100 3he4_A Synzip6; heterodimeric 47.4 32 0.0011 25.3 4.8 48 303-356 7-54 (56)
101 3q8t_A Beclin-1; autophagy, AT 47.2 1E+02 0.0034 24.9 8.4 29 324-352 23-51 (96)
102 3tq2_A KE1; parallel three hel 47.1 41 0.0014 22.8 4.9 33 321-353 3-35 (36)
103 4dzn_A Coiled-coil peptide CC- 46.6 42 0.0014 22.4 4.8 27 321-347 4-30 (33)
104 1j1d_C Troponin I, TNI; THIN f 46.4 88 0.003 27.0 8.3 64 298-361 35-107 (133)
105 3mq9_A Bone marrow stromal ant 46.3 1.4E+02 0.0048 28.9 10.9 51 308-358 418-468 (471)
106 3m9b_A Proteasome-associated A 45.5 21 0.00071 34.0 4.6 39 317-355 59-97 (251)
107 1gk7_A Vimentin; intermediate 45.1 16 0.00055 25.4 2.8 23 322-344 16-38 (39)
108 2dfs_A Myosin-5A; myosin-V, in 45.1 1.1E+02 0.0037 34.3 10.8 26 322-347 1019-1044(1080)
109 3he5_A Synzip1; heterodimeric 44.9 71 0.0024 22.9 6.2 10 338-347 36-45 (49)
110 4emc_A Monopolin complex subun 44.8 45 0.0015 30.6 6.5 35 321-355 22-56 (190)
111 2wvr_A Geminin; DNA replicatio 44.1 1.1E+02 0.0037 28.4 9.0 39 318-356 121-159 (209)
112 3v86_A De novo design helix; c 44.1 31 0.001 22.1 3.7 16 324-339 5-20 (27)
113 3oja_A Leucine-rich immune mol 43.7 1.2E+02 0.004 29.6 9.9 42 316-357 432-473 (487)
114 2pnv_A Small conductance calci 43.5 34 0.0012 24.3 4.4 32 319-350 9-40 (43)
115 1gmj_A ATPase inhibitor; coile 43.5 84 0.0029 25.4 7.2 21 333-353 58-78 (84)
116 1wle_A Seryl-tRNA synthetase; 43.1 68 0.0023 32.9 8.3 47 320-366 117-163 (501)
117 3o0z_A RHO-associated protein 42.4 94 0.0032 27.9 8.1 27 314-340 85-111 (168)
118 2xdj_A Uncharacterized protein 42.3 1.3E+02 0.0043 23.9 8.4 43 315-357 23-65 (83)
119 3a2a_A Voltage-gated hydrogen 42.0 67 0.0023 24.2 5.9 16 345-360 37-52 (58)
120 2xzr_A Immunoglobulin-binding 41.9 75 0.0026 26.6 6.8 40 321-360 71-110 (114)
121 1jcd_A Major outer membrane li 41.8 57 0.0019 24.0 5.5 32 326-357 4-35 (52)
122 1ses_A Seryl-tRNA synthetase; 41.1 28 0.00096 34.7 5.0 63 303-366 49-111 (421)
123 3mq7_A Bone marrow stromal ant 40.6 68 0.0023 27.5 6.5 33 325-357 70-102 (121)
124 1fzc_C Fibrin; blood coagulati 40.6 13 0.00044 36.3 2.4 38 319-356 4-41 (319)
125 2ve7_C Kinetochore protein NUF 40.4 17 0.00057 34.0 3.1 46 312-357 134-179 (250)
126 1gu4_A CAAT/enhancer binding p 40.4 51 0.0017 25.9 5.4 32 318-349 42-73 (78)
127 1am9_A Srebp-1A, protein (ster 40.3 67 0.0023 24.9 6.1 22 336-357 53-74 (82)
128 1l8d_A DNA double-strand break 40.0 84 0.0029 24.9 6.9 23 325-347 77-99 (112)
129 3hnw_A Uncharacterized protein 39.7 87 0.003 26.8 7.3 40 318-357 88-127 (138)
130 3v86_A De novo design helix; c 39.3 29 0.001 22.2 3.1 23 330-352 4-26 (27)
131 3trt_A Vimentin; cytoskeleton, 38.8 1.2E+02 0.0042 22.7 9.7 54 300-353 19-76 (77)
132 2dq0_A Seryl-tRNA synthetase; 38.8 35 0.0012 34.4 5.3 65 302-366 51-116 (455)
133 3oja_A Leucine-rich immune mol 38.2 1.7E+02 0.0058 28.5 10.1 43 310-352 433-475 (487)
134 2w83_C C-JUN-amino-terminal ki 38.2 55 0.0019 26.1 5.3 39 322-360 33-71 (77)
135 3cve_A Homer protein homolog 1 37.9 67 0.0023 25.1 5.7 33 324-356 19-51 (72)
136 2wt7_B Transcription factor MA 37.4 56 0.0019 26.5 5.3 37 321-358 44-80 (90)
137 3u06_A Protein claret segregat 37.0 53 0.0018 32.7 6.3 42 319-360 17-58 (412)
138 1a93_B MAX protein, coiled coi 36.5 60 0.002 22.2 4.5 27 331-357 5-31 (34)
139 3kin_B Kinesin heavy chain; mo 36.1 49 0.0017 27.5 5.0 23 331-353 94-116 (117)
140 1zxa_A CGMP-dependent protein 36.0 56 0.0019 25.3 4.9 40 318-357 17-56 (67)
141 3u1c_A Tropomyosin alpha-1 cha 35.8 1E+02 0.0034 24.9 6.7 35 322-356 40-74 (101)
142 3qh9_A Liprin-beta-2; coiled-c 35.6 1.2E+02 0.0042 24.3 6.9 41 318-358 25-65 (81)
143 2zqm_A Prefoldin beta subunit 35.0 81 0.0028 25.0 6.0 33 320-352 78-110 (117)
144 1uii_A Geminin; human, DNA rep 34.9 1.5E+02 0.0053 23.8 7.4 24 322-345 49-72 (83)
145 1nkp_A C-MYC, MYC proto-oncoge 34.8 1.5E+02 0.0052 23.3 7.5 40 321-360 47-86 (88)
146 1gmj_A ATPase inhibitor; coile 34.6 1.8E+02 0.0062 23.4 8.8 23 334-356 52-74 (84)
147 3u59_A Tropomyosin beta chain; 34.3 1.1E+02 0.0038 24.5 6.7 15 328-342 46-60 (101)
148 3m91_A Proteasome-associated A 34.3 1.1E+02 0.0038 22.4 6.0 34 319-352 16-49 (51)
149 1zme_C Proline utilization tra 33.5 42 0.0014 24.2 3.8 24 319-342 44-67 (70)
150 1m1j_C Fibrinogen gamma chain; 33.4 1.2E+02 0.0042 30.4 8.2 40 319-358 91-130 (409)
151 3viq_B Mating-type switching p 32.9 31 0.0011 27.9 3.1 32 334-367 42-73 (85)
152 1j1e_C Troponin I, TNI; THIN f 32.8 1.6E+02 0.0056 26.6 8.2 63 298-360 35-106 (180)
153 3qne_A Seryl-tRNA synthetase, 32.6 56 0.0019 33.5 5.7 65 302-366 53-118 (485)
154 3cvf_A Homer-3, homer protein 32.6 48 0.0016 26.4 4.1 34 324-357 25-58 (79)
155 3lvh_D LCB, clathrin light cha 32.5 77 0.0026 29.3 6.0 53 291-343 96-151 (205)
156 3vkg_A Dynein heavy chain, cyt 32.3 1.6E+02 0.0056 36.9 10.4 48 309-356 2025-2072(3245)
157 1uii_A Geminin; human, DNA rep 32.2 1.3E+02 0.0043 24.3 6.5 16 338-353 58-73 (83)
158 1ic2_A Tropomyosin alpha chain 32.0 1.4E+02 0.0047 23.0 6.7 38 320-357 35-72 (81)
159 3htk_A Structural maintenance 32.0 1.4E+02 0.0047 21.3 6.7 31 326-356 26-56 (60)
160 2oqq_A Transcription factor HY 31.9 1.2E+02 0.0039 21.7 5.5 23 320-342 18-40 (42)
161 3w03_C DNA repair protein XRCC 31.8 71 0.0024 29.0 5.7 29 319-347 152-180 (184)
162 1fxk_C Protein (prefoldin); ar 31.7 1.2E+02 0.0041 24.8 6.7 34 321-354 97-130 (133)
163 3mq9_A Bone marrow stromal ant 31.4 70 0.0024 31.1 6.0 12 211-222 298-309 (471)
164 2wg5_A General control protein 31.4 41 0.0014 27.5 3.7 27 328-354 9-35 (109)
165 3ghg_C Fibrinogen gamma chain; 31.2 1.7E+02 0.0057 29.6 8.7 45 316-360 88-132 (411)
166 1ytz_I Troponin I; muscle, THI 31.1 89 0.0031 28.4 6.2 63 299-361 34-104 (182)
167 1g6u_A Domain swapped dimer; d 30.5 92 0.0031 22.2 4.8 21 336-356 23-43 (48)
168 3a7p_A Autophagy protein 16; c 29.9 2.9E+02 0.01 24.4 10.5 42 319-360 96-137 (152)
169 3lay_A Zinc resistance-associa 29.7 2.4E+02 0.0084 25.0 8.8 22 288-309 67-88 (175)
170 4h22_A Leucine-rich repeat fli 29.7 1.4E+02 0.0049 24.8 6.7 39 319-357 37-82 (103)
171 4b4t_K 26S protease regulatory 29.5 98 0.0034 30.9 6.8 42 319-360 49-90 (428)
172 2aze_A Transcription factor DP 28.9 1.2E+02 0.0042 26.9 6.5 44 290-339 3-49 (155)
173 4emc_A Monopolin complex subun 28.6 67 0.0023 29.4 4.9 43 317-360 39-81 (190)
174 1wlq_A Geminin; coiled-coil; 2 28.5 1.9E+02 0.0064 23.3 6.9 22 319-340 45-66 (83)
175 3lay_A Zinc resistance-associa 28.5 2.7E+02 0.0091 24.7 8.8 19 334-352 114-132 (175)
176 3vmx_A Voltage-gated hydrogen 28.2 1.5E+02 0.0052 21.6 5.8 25 322-346 14-38 (48)
177 3gpv_A Transcriptional regulat 28.1 79 0.0027 26.7 5.1 46 320-365 96-141 (148)
178 3q0x_A Centriole protein; cent 28.0 2.5E+02 0.0086 26.1 8.8 42 319-360 178-219 (228)
179 1ytz_T Troponin T; muscle, THI 27.8 1.8E+02 0.006 24.2 7.0 41 319-359 49-89 (107)
180 3efg_A Protein SLYX homolog; x 26.9 1.1E+02 0.0037 23.9 5.2 36 319-354 28-63 (78)
181 1fxk_C Protein (prefoldin); ar 26.8 1.9E+02 0.0066 23.5 7.1 25 321-345 104-128 (133)
182 3lss_A Seryl-tRNA synthetase; 26.5 1.1E+02 0.0039 31.2 6.8 28 325-352 109-137 (484)
183 1yhn_B RILP, RAB interacting l 26.3 84 0.0029 24.2 4.3 38 327-366 4-41 (65)
184 3u06_A Protein claret segregat 25.7 1.7E+02 0.0059 29.0 7.8 35 321-355 26-60 (412)
185 1fmh_A General control protein 25.7 1.1E+02 0.0038 20.3 4.2 26 328-353 3-28 (33)
186 3a2a_A Voltage-gated hydrogen 25.7 1.1E+02 0.0039 23.0 4.8 26 322-347 21-46 (58)
187 3swk_A Vimentin; cytoskeleton, 25.5 2.5E+02 0.0084 22.1 8.3 48 307-354 27-84 (86)
188 2eqb_B RAB guanine nucleotide 25.5 1.8E+02 0.0062 23.9 6.5 9 348-356 84-92 (97)
189 2er8_A Regulatory protein Leu3 25.4 37 0.0013 24.8 2.2 22 318-339 48-69 (72)
190 2yo3_A General control protein 25.4 67 0.0023 30.9 4.5 41 320-360 224-264 (268)
191 1hlo_A Protein (transcription 25.3 59 0.002 24.9 3.4 23 319-341 57-79 (80)
192 3iv1_A Tumor susceptibility ge 25.1 2.6E+02 0.0088 22.2 8.2 29 311-339 10-38 (78)
193 2l5g_A GPS2 protein, G protein 24.8 80 0.0027 22.0 3.6 22 331-352 13-34 (38)
194 3swy_A Cyclic nucleotide-gated 24.7 2E+02 0.0067 20.7 6.1 25 319-343 5-29 (46)
195 1fxk_A Prefoldin; archaeal pro 24.7 1.1E+02 0.0037 23.9 5.0 30 321-350 74-103 (107)
196 3lvg_D LCB, clathrin light cha 24.7 1.3E+02 0.0045 27.4 6.0 52 292-343 82-136 (190)
197 3ol1_A Vimentin; structural ge 24.6 2.9E+02 0.01 22.7 9.4 51 307-357 47-107 (119)
198 1bb1_B Designed, thermostable 24.2 1.6E+02 0.0053 20.0 4.8 31 327-357 3-33 (36)
199 4b4t_J 26S protease regulatory 24.2 1.2E+02 0.0042 30.2 6.3 41 318-358 24-64 (405)
200 2wvr_A Geminin; DNA replicatio 24.0 2.2E+02 0.0074 26.4 7.4 43 318-360 114-159 (209)
201 3he4_A Synzip6; heterodimeric 24.0 38 0.0013 24.9 1.9 29 321-349 26-54 (56)
202 2ve7_A Kinetochore protein HEC 24.0 1.3E+02 0.0043 28.8 6.2 24 320-343 186-209 (315)
203 2wuj_A Septum site-determining 23.5 70 0.0024 23.4 3.4 28 328-355 29-56 (57)
204 3he4_B Synzip5; heterodimeric 23.4 2E+02 0.0068 20.3 6.5 38 323-360 7-44 (46)
205 2wg5_A General control protein 23.4 69 0.0024 26.2 3.7 27 320-346 8-34 (109)
206 3cvf_A Homer-3, homer protein 23.3 1.9E+02 0.0064 22.9 6.0 6 306-311 34-39 (79)
207 1j1d_B Troponin T, TNT; THIN f 23.1 3.2E+02 0.011 22.6 8.9 57 303-359 24-89 (106)
208 1q08_A Zn(II)-responsive regul 23.1 1.4E+02 0.0047 22.8 5.2 39 330-368 43-86 (99)
209 3w03_C DNA repair protein XRCC 22.7 1.9E+02 0.0064 26.2 6.7 38 319-356 145-182 (184)
210 4etp_A Kinesin-like protein KA 22.6 1.9E+02 0.0065 28.5 7.4 41 320-360 18-58 (403)
211 3mud_A DNA repair protein XRCC 22.2 2.2E+02 0.0074 25.7 6.9 33 310-342 133-165 (175)
212 2j5u_A MREC protein; bacterial 22.1 37 0.0013 31.6 2.0 35 324-358 24-61 (255)
213 2w6a_A ARF GTPase-activating p 22.1 2.7E+02 0.0091 21.3 7.1 44 304-353 18-61 (63)
214 1wlq_A Geminin; coiled-coil; 2 22.1 2.5E+02 0.0084 22.6 6.5 23 321-343 40-62 (83)
215 2zvf_A Alanyl-tRNA synthetase; 22.0 1.1E+02 0.0038 25.7 4.9 32 322-353 28-59 (171)
216 2oa5_A Hypothetical protein BQ 22.0 52 0.0018 27.8 2.7 23 336-358 11-33 (110)
217 2v4h_A NF-kappa-B essential mo 20.6 2.8E+02 0.0096 23.3 6.9 43 314-356 57-106 (110)
218 3haj_A Human pacsin2 F-BAR; pa 20.6 3.7E+02 0.013 26.6 9.1 67 294-360 185-252 (486)
219 3iyn_Q Protein IX, PIX, hexon- 20.5 66 0.0023 28.0 3.1 34 319-352 98-131 (140)
220 2w6a_A ARF GTPase-activating p 20.5 2.9E+02 0.0099 21.1 6.5 34 321-354 22-55 (63)
221 3mud_A DNA repair protein XRCC 20.4 2.4E+02 0.0081 25.4 6.8 38 319-356 128-165 (175)
222 3ibp_A Chromosome partition pr 20.3 2.7E+02 0.0094 27.1 7.7 42 319-360 224-265 (302)
223 2l5g_A GPS2 protein, G protein 20.2 1.6E+02 0.0054 20.6 4.3 21 318-338 14-34 (38)
224 2ocy_A RAB guanine nucleotide 20.1 1.7E+02 0.0057 25.9 5.7 35 323-357 112-146 (154)
No 1
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.66 E-value=1.1e-16 Score=122.13 Aligned_cols=62 Identities=68% Similarity=0.899 Sum_probs=54.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7086 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEH 359 (376)
Q Consensus 298 KreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H 359 (376)
|.+|||+|||+||+|||+||++++.+||.+|..|+.+|.+|..++..|+.|+.+||++|+.|
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~~H 62 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMNH 62 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999999999999999999998
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.65 E-value=5.7e-16 Score=118.71 Aligned_cols=62 Identities=29% Similarity=0.430 Sum_probs=60.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7086 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEH 359 (376)
Q Consensus 298 KreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H 359 (376)
|+.++++|||+||+|||+||++++.+|+.+|+.|+.+|.+|..+|..|++|+.+|+.+|..|
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~H 63 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAH 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 67889999999999999999999999999999999999999999999999999999999988
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.61 E-value=2.1e-15 Score=114.57 Aligned_cols=60 Identities=30% Similarity=0.436 Sum_probs=58.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 298 KreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
|++++++|||+||.|||+||++++..||.+++.|+.+|.+|..+|..|+.|+.+||++|+
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578899999999999999999999999999999999999999999999999999999986
No 4
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.52 E-value=2.6e-14 Score=109.73 Aligned_cols=61 Identities=28% Similarity=0.363 Sum_probs=54.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 298 KreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
|+.++|+|||+||.|||+||+++++.|+.+++.|+.+|.+|..+++.|+.|+.+||++|.+
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788999999999999999999999999999999999999999999999999999999875
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.28 E-value=4.7e-12 Score=97.40 Aligned_cols=52 Identities=38% Similarity=0.517 Sum_probs=46.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 299 IERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVC 350 (376)
Q Consensus 299 reRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~ 350 (376)
.++||.|||+||.|||+||++++.+|+.+|..|+.+|..|..++..|++++.
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999999999999999999988775
No 6
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=99.26 E-value=1.3e-11 Score=98.88 Aligned_cols=71 Identities=24% Similarity=0.354 Sum_probs=60.6
Q ss_pred CCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 287 SPIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 287 sPiD~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
..+|.++.+. +.||+||++||+|||.+++.+...++.++..|+.+|..|+.+|..|+.|+..||++|++|-
T Consensus 7 k~~dk~d~~Y---~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~p 77 (78)
T 1gu4_A 7 KTVDKHSDEY---KIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (78)
T ss_dssp ---CTTCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred CCcccCcHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3556666664 4569999999999999999999999999999999999999999999999999999998874
No 7
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=99.21 E-value=6.4e-11 Score=96.64 Aligned_cols=72 Identities=24% Similarity=0.351 Sum_probs=61.7
Q ss_pred CCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy7086 287 SPIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVH 361 (376)
Q Consensus 287 sPiD~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~ 361 (376)
..+|.+++++ ++||.||.+||+|||.+++.+..+++.++..|+.+|..|+.+|..|+.|+..|+++|++|-+
T Consensus 7 k~~dk~d~~Y---~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 7 KTVDKHSDEY---KIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp ---CTTSHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCcCcccHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 3556666654 56799999999999999999999999999999999999999999999999999999999874
No 8
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.10 E-value=7.5e-11 Score=88.49 Aligned_cols=53 Identities=34% Similarity=0.443 Sum_probs=48.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVC 350 (376)
Q Consensus 298 KreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~ 350 (376)
|+.+|+.+||+||.+||.||++++++||.+|..|+.+|..|..++..|++++.
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788999999999999999999999999999999999999999999887653
No 9
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.71 E-value=4.5e-08 Score=76.97 Aligned_cols=58 Identities=29% Similarity=0.406 Sum_probs=54.4
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 301 RKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 301 RRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
+|+++||.|+..+|.||.++|.+||.+|..|+..+..|..++..|+.++..|...+..
T Consensus 11 kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 11 KRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999999999887753
No 10
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.68 E-value=1.3e-07 Score=77.64 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=64.2
Q ss_pred CCcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 289 IDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 289 iD~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
+..++-.++|..||+.+||.+|+.||.||.+.+..||.++..|..+...|..+...+..|+..+|+.+..
T Consensus 18 ls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 18 FTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667799999999999999999999999999999999999999999999999999999999988753
No 11
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.57 E-value=3.4e-09 Score=89.44 Aligned_cols=67 Identities=25% Similarity=0.395 Sum_probs=56.6
Q ss_pred CCcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 289 IDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 289 iD~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
...++..++|..||+.+||+||+.||.||.+.+..||+++..|..+...|..+...|+.|+..||..
T Consensus 28 Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k 94 (107)
T 3a5t_A 28 LSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSK 94 (107)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSC
T ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667799999999999999999999999999999888888888888877777777777666654
No 12
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=98.20 E-value=6.3e-07 Score=73.60 Aligned_cols=38 Identities=29% Similarity=0.553 Sum_probs=33.4
Q ss_pred CCCcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy7086 288 PIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLE 325 (376)
Q Consensus 288 PiD~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE 325 (376)
.+..++.+.++..|||.|||+||++||+||.+.+++|+
T Consensus 52 ~Ls~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~ 89 (92)
T 1skn_P 52 SLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMS 89 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 44667778899999999999999999999999998875
No 13
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=97.46 E-value=0.00043 Score=52.50 Aligned_cols=43 Identities=33% Similarity=0.389 Sum_probs=37.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 299 IERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASV 341 (376)
Q Consensus 299 reRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~e 341 (376)
.|++|-|||+|++|||.|-+..++...+-...-..||..|+--
T Consensus 2 le~kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l 44 (63)
T 2c9l_Y 2 LEIKRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLL 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 3678999999999999999999999988888878888887753
No 14
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.45 E-value=0.00029 Score=50.45 Aligned_cols=40 Identities=30% Similarity=0.358 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
|.++.+||.++++|+..|.+|...++.|..|..+|++.|.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 5789999999999999999999999999999999999986
No 15
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=97.38 E-value=7e-06 Score=67.39 Aligned_cols=34 Identities=41% Similarity=0.594 Sum_probs=29.4
Q ss_pred CCCcchHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy7086 288 PIDMESQERIKIERKRQRNRVAASKCRKRKLERI 321 (376)
Q Consensus 288 PiD~eeqE~iKreRRReRNRvAAsKCRqRKKe~I 321 (376)
....++.+.++..|||.+||+||++||+||.+.|
T Consensus 56 ~Ls~~Ql~lIrdiRRRgKNKvAAqnCRKRKld~I 89 (91)
T 2kz5_A 56 PLTESQLALVRDIRRRGKNKVAAQNYRKRKLETI 89 (91)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC
T ss_pred CCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 4456777889999999999999999999998754
No 16
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=95.95 E-value=0.0001 Score=60.39 Aligned_cols=32 Identities=44% Similarity=0.651 Sum_probs=27.8
Q ss_pred CCcchHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy7086 289 IDMESQERIKIERKRQRNRVAASKCRKRKLER 320 (376)
Q Consensus 289 iD~eeqE~iKreRRReRNRvAAsKCRqRKKe~ 320 (376)
...++.+.++..|||.+||+||+.||+||.+.
T Consensus 57 Lt~~Ql~lIrdiRRRgKNkvAAqnCRKRKld~ 88 (90)
T 2lz1_A 57 FNEAQLALIRDIRRRGKNKVAAQNCRKRKLEN 88 (90)
T ss_dssp CCHHHHHHHHHHHHHSCSCCCCCCCSCCCCSC
T ss_pred CCHHHHHHHHHHHHhhhhHHHHHHcchhhccc
Confidence 45567788999999999999999999999753
No 17
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=94.56 E-value=0.065 Score=37.18 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCS 351 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~ 351 (376)
+++..||++|++|-.+|++|..++..|+.-+..
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 468899999999999999988888877765543
No 18
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=94.05 E-value=0.073 Score=36.52 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
+++..||++|+.|-.+|.+|..++..|++
T Consensus 1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 46889999999999999988887777765
No 19
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=93.83 E-value=0.068 Score=37.09 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVC 350 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~ 350 (376)
+++..||++|+.|-.+|.+|..++..|+..+.
T Consensus 1 eRMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 1 XEVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 35788999999999999999888888876553
No 20
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=93.56 E-value=0.073 Score=36.34 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
++..||++|++|-.+|.+|+.++..|++
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678999999999888888777776664
No 21
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=93.18 E-value=0.13 Score=35.33 Aligned_cols=29 Identities=7% Similarity=0.257 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
+++..||++|++|-.+|.+|..++..|+.
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 46889999999999998888777776664
No 22
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=92.18 E-value=0.16 Score=34.84 Aligned_cols=29 Identities=10% Similarity=0.424 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
+++..||++|+.|-.+|.+|..++..|++
T Consensus 1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 1 XRMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 46789999999999999888877777664
No 23
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=92.13 E-value=0.21 Score=34.03 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
++..||++|++|-.+|.+|..++..|+.
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3678999999998888888877777664
No 24
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=92.13 E-value=0.21 Score=34.03 Aligned_cols=28 Identities=11% Similarity=0.314 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
++..||++|++|-.+|.+|..++..|++
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3678999999999888888777766664
No 25
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=91.74 E-value=0.23 Score=34.08 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQ 348 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreE 348 (376)
++..||++|++|-.+|.+|..++..|+.-
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 57889999999999999888887777653
No 26
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=91.45 E-value=0.33 Score=35.95 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7086 326 ERVKILKGENNELASVASKLKQQVCSLKEQVMEH 359 (376)
Q Consensus 326 ~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H 359 (376)
..++.|+.+|.+|+.++..|.+++..|+..|..+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5788999999999999999999999999988754
No 27
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=91.31 E-value=0.23 Score=34.10 Aligned_cols=28 Identities=11% Similarity=0.296 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
++..||++|+.|-.+|.+|..++..|++
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5778999999998888887777666654
No 28
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=88.71 E-value=1.3 Score=32.64 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
.++..+|+.++..|..+|.+|...+...++|+..|+..|..
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566799999999999999999999999999999998864
No 29
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=86.27 E-value=0.92 Score=31.12 Aligned_cols=28 Identities=4% Similarity=0.195 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
++..||++|++|-.++..|..++..|++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5778999999998888888877777664
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.24 E-value=2.5 Score=34.06 Aligned_cols=39 Identities=31% Similarity=0.417 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASK-------LKQQVCSLKEQV 356 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~-------LreEv~~LKq~L 356 (376)
.+.|.-|+.++++|+.+|..|..++.. |..++.+||+..
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 366777888888888888887777666 666777777654
No 31
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=84.14 E-value=1.3 Score=35.00 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 316 RKLERIANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 316 RKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
+|.+.|...+..++.|+.+..+...+|..|+.++..+++
T Consensus 30 ~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 30 EKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555666666666666666666666666666666554
No 32
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=83.39 E-value=3.6 Score=29.87 Aligned_cols=40 Identities=23% Similarity=0.433 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
|.+|...--.|+..-..|+.-+..|++|++.|...|..|.
T Consensus 12 iarlkkdnlqlerdeqnlekiianlrdeiarlenevashe 51 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVASHE 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555555556666667788888899999999999888874
No 33
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=82.05 E-value=0.65 Score=30.08 Aligned_cols=27 Identities=37% Similarity=0.506 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 328 VKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 328 vk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
++.|+-+|..|+.++..|++.+..||+
T Consensus 2 idalefendaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHhccHHHHHHHHHHHHHHHHhcC
Confidence 356788899999999999988888874
No 34
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=81.27 E-value=1.8 Score=33.68 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 329 KILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 329 k~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
+.|..++.+|..++..|+.++..|++.|....
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455556666666666777777777766554
No 35
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=81.12 E-value=2.8 Score=33.03 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
.++|..|+++...+..++..|+.++..|+.++.+|
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 37888888888888877777777777777666543
No 36
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=77.98 E-value=4.1 Score=32.95 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 317 KLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 317 KKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
--..|..|..+++.+..++..|..++..|.+++..+|..|
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4578999999999999999999999999999999999764
No 37
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=76.51 E-value=7.3 Score=29.42 Aligned_cols=34 Identities=32% Similarity=0.324 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 324 LEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 324 LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
=.+.+..|+.+-..|..+...|+.++..|+++|.
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467788888888899999999999999888764
No 38
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=76.26 E-value=5.3 Score=31.84 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
.++|..|+.+...+..+...|+.+...|+.++.+|+
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467777777777777777777777777776666664
No 39
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=76.22 E-value=9.5 Score=29.55 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
.++|..|+.++..|+.+..+|+.++..|+.++..|.
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999887653
No 40
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=75.53 E-value=4.9 Score=27.85 Aligned_cols=32 Identities=41% Similarity=0.444 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 327 RVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
++..|+.+-.+|..+...|..||..||.++-+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 56789999999999999999999999998864
No 41
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=75.34 E-value=3.4 Score=39.37 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVH 361 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~ 361 (376)
.+++.+|+.++..|..+|..|..++..+++|+.+||..|..-..
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55688899999999999999999999999999999999876553
No 42
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=75.08 E-value=2.7 Score=28.65 Aligned_cols=31 Identities=32% Similarity=0.330 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 328 VKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 328 vk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
...|+.+-.+|..+...|+.||..||.+|.+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 3578899999999999999999999998753
No 43
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=75.00 E-value=3.1 Score=32.42 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
..+..|+.....+..+|..|+.++..|..|+..||
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35788899999999999999999999999998775
No 44
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=74.36 E-value=5 Score=27.48 Aligned_cols=31 Identities=6% Similarity=0.141 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 327 RVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+...|+.+-.+|-.+...|+.||..||.+|-
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999874
No 45
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=72.99 E-value=5.7 Score=27.24 Aligned_cols=31 Identities=29% Similarity=0.325 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 327 RVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+...|+.+-.+|..+.+.|+.||..||.+|-
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4567899999999999999999999999874
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.97 E-value=21 Score=35.59 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 316 RKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 316 RKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
.+++..+.++.++..++.+..+.+..+..|++|+..+++.+
T Consensus 534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33444454445555555555444455555555544444443
No 47
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=71.98 E-value=6.2 Score=26.87 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 328 VKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 328 vk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
...|+.+-.+|-.+...|+.||..||.+|-
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 467889999999999999999999999874
No 48
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=71.40 E-value=3.2 Score=26.83 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 328 VKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 328 vk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
+..|+.+|..|+.++..|.-|+..|.
T Consensus 2 irrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 34567777778888877777777653
No 49
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=71.13 E-value=6.7 Score=26.72 Aligned_cols=30 Identities=17% Similarity=0.076 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 328 VKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 328 vk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
...|+.+-.+|..+...|..||..||.+|-
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 467899999999999999999999998873
No 50
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=70.85 E-value=8.7 Score=25.65 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 328 VKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 328 vk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
+..|+.+...|+.++..|+=|+..||+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555666666666666666666665
No 51
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=70.59 E-value=22 Score=30.52 Aligned_cols=40 Identities=13% Similarity=0.317 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
.++++|+++++.|..+..+...+++.||.+...|...+..
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 3588888888888888888888888888888877766653
No 52
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=69.69 E-value=27 Score=25.97 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 327 RVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
.+..|+.+-..|..+...|+.++..|+..+.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777777777777777776654
No 53
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=69.31 E-value=5.9 Score=27.47 Aligned_cols=32 Identities=31% Similarity=0.390 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 327 RVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
++..|+.+-.+|..+...|..||..||.++-+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 45788999999999999999999999998764
No 54
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=68.77 E-value=20 Score=26.25 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
++.+|.+-...|..+-.+|...-..+.+|+..|+.+|.+|.
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqHg 45 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQNG 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcC
Confidence 44555555555555556666666667788888999999886
No 55
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=68.61 E-value=17 Score=29.33 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEH 359 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H 359 (376)
..++..|+.+-..|+.+...|..++..|+.-+.++-..+..-
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~~~ 83 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLAS 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHhcc
Confidence 467889999999999999999999999999888887776633
No 56
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=68.59 E-value=24 Score=26.12 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 326 ERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 326 ~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+.+..|+.+-..|..+...|+.++..|+..+.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777777777777776654
No 57
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=67.44 E-value=20 Score=25.77 Aligned_cols=37 Identities=27% Similarity=0.483 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASV-------ASKLKQQVCSLKEQV 356 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~e-------i~~LreEv~~LKq~L 356 (376)
.+..||.+|..|+.+|..|+.+ +.-|..|++.|+..+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888777654 445666666666554
No 58
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=67.13 E-value=12 Score=29.96 Aligned_cols=48 Identities=23% Similarity=0.403 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCccc
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVH--NGCQIN 367 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~--~gC~l~ 367 (376)
.+..++.+...+..+..+|...+..++.++..|+..+..... .-||+=
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvC 53 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVC 53 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence 455566666666667777777777777777777776665542 238874
No 59
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=66.73 E-value=6.7 Score=26.89 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 327 RVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+...|+.+-.+|-.+...|..||..||.+|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 3567899999999999999999999999875
No 60
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=66.46 E-value=49 Score=26.57 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
+...-.++.++++.+.+|.+|..++..|+.++..|+
T Consensus 37 r~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 37 RTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888999999999999999999998875
No 61
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=66.35 E-value=8.8 Score=26.29 Aligned_cols=31 Identities=35% Similarity=0.354 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 327 RVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
++..|+..-.+|..+...|..||..||..|-
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999874
No 62
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=64.50 E-value=7 Score=26.80 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 327 RVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+...|+.+-.+|-.+...|..||..||.+|-
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 4568899999999999999999999998864
No 63
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=63.14 E-value=7.2 Score=28.82 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQ 348 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreE 348 (376)
++++.+.+.++.|..+|.+|+.++..|+++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467777888888888888888888777654
No 64
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=62.66 E-value=16 Score=24.42 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQ 348 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreE 348 (376)
+..||.+|...+.+|-.|..++.+|.-|
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4677888888888887777766666543
No 65
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=62.20 E-value=11 Score=25.94 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKL 345 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~L 345 (376)
++...+..+++|+.+|..|..++..|
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 34556667777777777776666543
No 66
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=61.96 E-value=22 Score=27.90 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Q psy7086 320 RIANLEERVKILKGENNELA-------SVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~-------~ei~~LreEv~~LKq~Ll~ 358 (376)
+|.+||.++.-.+.-..+|. .+|..|+.++..|.+.+..
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554 4444555555555555443
No 67
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=61.80 E-value=25 Score=26.17 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVAS-------KLKQQVCSLKEQVM 357 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~-------~LreEv~~LKq~Ll 357 (376)
+.|-.+|+.|+.||.-|+.++. .|..|...+|..+.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk 48 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLK 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHH
Confidence 5677888888888888876654 57777777777654
No 68
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.52 E-value=35 Score=34.02 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
.+.++|.+++..+.+..+|+.++..+++++.+|.+.
T Consensus 545 ~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 545 ENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 69
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=61.38 E-value=21 Score=30.77 Aligned_cols=41 Identities=15% Similarity=0.222 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEH 359 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H 359 (376)
..+..++.+.+.++.++.+|+.++..|+.++..|...+..|
T Consensus 96 ~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~~ 136 (138)
T 3hnw_A 96 HELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELNDS 136 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35555666666667777777777777777777776666554
No 70
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=61.34 E-value=20 Score=32.75 Aligned_cols=49 Identities=24% Similarity=0.283 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 312 KCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 312 KCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
-+..=-++.-.+||..+..++.++.+|...+..|+.++..+|..+....
T Consensus 35 EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 35 EFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667788889999999999999999999999999998888876553
No 71
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=61.04 E-value=24 Score=28.40 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7086 325 EERVKILKGENNELASVASKL 345 (376)
Q Consensus 325 E~kvk~Le~eN~eL~~ei~~L 345 (376)
-++|..|+.+|..|..++..+
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l 42 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554443
No 72
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=60.73 E-value=34 Score=28.56 Aligned_cols=51 Identities=25% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 294 QERIKIERKRQRN-------RVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQ 348 (376)
Q Consensus 294 qE~iKreRRReRN-------RvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreE 348 (376)
+|.+..+++..+= |..+..+ -.+|.+|+.+|+.|..+|..|..+...-+.+
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~----~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRL----DARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 73
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=60.35 E-value=11 Score=31.66 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=10.9
Q ss_pred CcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy7086 290 DMESQERIKIERKRQRNRVAASKCRKRKLERIANLEER 327 (376)
Q Consensus 290 D~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~k 327 (376)
|.+.....|+..+|.-.-++.++-|.+=.+++..|..-
T Consensus 15 ~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~l 52 (118)
T 4ati_A 15 ESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTL 52 (118)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444455555555544445544443
No 74
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=59.32 E-value=17 Score=30.16 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
.+..|..+++.|+.+|..|+.++..|..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444444443
No 75
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=59.16 E-value=9.6 Score=30.36 Aligned_cols=30 Identities=37% Similarity=0.411 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 326 ERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 326 ~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
++|+.|+.+..+|..++..|+.|...||..
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666666666654
No 76
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=57.03 E-value=25 Score=26.33 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVC 350 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~ 350 (376)
..++.|+.+-..|+.+...|+.++..|+.-+.
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666677777777777777766665543
No 77
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=56.83 E-value=18 Score=24.80 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 327 RVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+...|+.+-.+|..+...|..||..|+.+|=
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4678889999999999999999999998874
No 78
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=56.72 E-value=55 Score=23.94 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 328 VKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 328 vk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
+..|+.+-..|..+...|+.++..|+..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555554443
No 79
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=55.79 E-value=28 Score=34.04 Aligned_cols=38 Identities=24% Similarity=0.182 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
+++.+||..+...+.+...|+..+..++..+.+|+++|
T Consensus 12 ~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i 49 (323)
T 1lwu_C 12 EEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQL 49 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666666665543
No 80
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=55.51 E-value=15 Score=36.36 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 316 RKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 316 RKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
...+.|++++.+++.++.+..+.......|..++..||.-|
T Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 21 ALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 33445555555555555555555555555555565555443
No 81
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=54.83 E-value=32 Score=25.19 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 326 ERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 326 ~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
.-+.+|+.+...|..+...|+.++..|++.+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467777777777777777777777776644
No 82
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=53.65 E-value=20 Score=27.97 Aligned_cols=8 Identities=13% Similarity=0.065 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy7086 322 ANLEERVK 329 (376)
Q Consensus 322 ~~LE~kvk 329 (376)
..|+.++.
T Consensus 53 ~~Lq~~~~ 60 (82)
T 1am9_A 53 RFLQHSNQ 60 (82)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 83
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=53.45 E-value=28 Score=28.84 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy7086 326 ERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGC 364 (376)
Q Consensus 326 ~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC 364 (376)
+++..|+.+...|+.+...|++++..|...|..+.-.|+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd 50 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGD 50 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 478899999999999999999999999999977554343
No 84
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=52.77 E-value=44 Score=26.55 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
+..|+.+.+.++.+...|..++..++.++..|+..|..
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555443
No 85
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=52.37 E-value=42 Score=26.89 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7086 338 LASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 338 L~~ei~~LreEv~~LKq~L 356 (376)
|..++..|++|...+...|
T Consensus 53 L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444443
No 86
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=52.20 E-value=45 Score=24.55 Aligned_cols=36 Identities=6% Similarity=0.140 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
.|..|..+|..|..+-..|...+..|+.++..-|..
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666677776666666666666666666655543
No 87
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=51.84 E-value=39 Score=28.14 Aligned_cols=49 Identities=16% Similarity=0.128 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 309 AASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 309 AAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
++.+-|.|=.-.+..++..+++++.+..+-......+..++..||..|-
T Consensus 31 ~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD 79 (119)
T 3ol1_A 31 QLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 79 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccc
Confidence 3444444444556666666666665554444444455555555555543
No 88
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=51.74 E-value=44 Score=26.55 Aligned_cols=35 Identities=11% Similarity=0.193 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
+-+|..++..|..+...|+..++.+.-++.++++.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666555555553
No 89
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=51.20 E-value=36 Score=28.53 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
..+.+|+.++...+..|..|...-..|..++..|+..|-.
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888889999999999999999999988754
No 90
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=51.06 E-value=18 Score=24.17 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVASKLKQQV 349 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~LreEv 349 (376)
++||+++..|..--.+|...+..|.+-+
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666566665555555544
No 91
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=50.45 E-value=51 Score=25.82 Aligned_cols=37 Identities=8% Similarity=0.272 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+..|+.+.+.++.+...|..++..++.++..|+..|-
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555566666666655554
No 92
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=50.44 E-value=28 Score=25.54 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQ 348 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreE 348 (376)
++.|..+..+|+.++..|..++..|+.+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 93
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=50.37 E-value=73 Score=25.41 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 317 KLERIANLEERVKILKGENNELASVASKLK 346 (376)
Q Consensus 317 KKe~I~~LE~kvk~Le~eN~eL~~ei~~Lr 346 (376)
=...|+.++.++..|+.+|..|..-+...+
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666667777766654444433
No 94
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.39 E-value=21 Score=28.07 Aligned_cols=30 Identities=17% Similarity=0.062 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 317 KLERIANLEERVKILKGENNELASVASKLK 346 (376)
Q Consensus 317 KKe~I~~LE~kvk~Le~eN~eL~~ei~~Lr 346 (376)
|.+.|.+|+.++.+.+.+..+|+.++..++
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677777777777777777777776654
No 95
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=49.35 E-value=26 Score=23.08 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVASKLKQQV 349 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~LreEv 349 (376)
+.|..-+..|+.+|..|+.+++.|-..+
T Consensus 2 dqlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667778888888888777665443
No 96
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=48.11 E-value=48 Score=25.88 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
..-+..--+=+..|+.++..|..++..|+.+...|++.|.
T Consensus 39 ~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 39 LSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666788899999999999999999999998875
No 97
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=48.09 E-value=26 Score=27.16 Aligned_cols=31 Identities=35% Similarity=0.330 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 316 RKLERIANLEERVKILKGENNELASVASKLK 346 (376)
Q Consensus 316 RKKe~I~~LE~kvk~Le~eN~eL~~ei~~Lr 346 (376)
.|.++|.+||..+..-..++.+|+.++..++
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777776666666665555554443
No 98
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=48.06 E-value=35 Score=27.05 Aligned_cols=36 Identities=17% Similarity=0.377 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
|.+|..++..+..+|..|..++..++..+..+|...
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~Ky 37 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 37 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777766666554
No 99
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=47.81 E-value=14 Score=29.43 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELAS 340 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ 340 (376)
++|.+|++++..|+.||.-|+.
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544
No 100
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=47.42 E-value=32 Score=25.27 Aligned_cols=48 Identities=33% Similarity=0.470 Sum_probs=35.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 303 RQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 303 ReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
..+||+|- |...-.+||.-|..|+..|..|+..+..|...+..|..-+
T Consensus 7 qlknrvay------klkenaklenivarlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 7 QLKNRVAY------KLKENAKLENIVARLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp ----CCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 35666653 4455677889999999999999999999999988887654
No 101
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=47.24 E-value=1e+02 Score=24.85 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 324 LEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 324 LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
|..++..|+.+...|..++..++.+...|
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444333333333333
No 102
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=47.05 E-value=41 Score=22.81 Aligned_cols=33 Identities=36% Similarity=0.415 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
++.|.++|..|+.+---|.-+++.|++.+..||
T Consensus 3 vsalkekvsalkeqflmlmfkvsalkekvsalk 35 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLMLMFKVSALKEKVSALK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566778888888888888888888888877765
No 103
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=46.62 E-value=42 Score=22.39 Aligned_cols=27 Identities=37% Similarity=0.379 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
|..|.+++..|+.+...|+-++..|++
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455556666666666666666666554
No 104
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=46.40 E-value=88 Score=27.03 Aligned_cols=64 Identities=14% Similarity=0.265 Sum_probs=43.3
Q ss_pred HHHHHHhhhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy7086 298 KIERKRQRNRVAASKCRKR---------KLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVH 361 (376)
Q Consensus 298 KreRRReRNRvAAsKCRqR---------KKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~ 361 (376)
+.++..+|-|+=|.||--- =++...+|-+.+..|+.+.-+|...+..-.-|+..|+..|..+.+
T Consensus 35 ~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 35 AEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc
Confidence 3344456667777777221 134556666777777888888888877777788888888887753
No 105
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=46.30 E-value=1.4e+02 Score=28.92 Aligned_cols=51 Identities=14% Similarity=0.166 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 308 VAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 308 vAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
.-|.-|-.-=....+.|+.++..-+.+..+|+.+|..|..++..++.+|.+
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 418 AQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445444445566666666665566666666666666666666655544
No 106
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=45.46 E-value=21 Score=33.99 Aligned_cols=39 Identities=23% Similarity=0.170 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 317 KLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 317 KKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
....+..|+.+.+.|+....+++.++..|++|+..|++-
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456778899999999999999999999999999999863
No 107
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=45.13 E-value=16 Score=25.36 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVASK 344 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~ 344 (376)
...-++|..|+.+|..|..++..
T Consensus 16 AsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 16 ANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456788888888888877653
No 108
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.08 E-value=1.1e+02 Score=34.28 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
++|++++..|+.+|..|+.++..|..
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555543
No 109
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=44.87 E-value=71 Score=22.88 Aligned_cols=10 Identities=20% Similarity=0.385 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy7086 338 LASVASKLKQ 347 (376)
Q Consensus 338 L~~ei~~Lre 347 (376)
|..++..||.
T Consensus 36 lekeianlrk 45 (49)
T 3he5_A 36 LEKEIANLRK 45 (49)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 110
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=44.82 E-value=45 Score=30.58 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
|+.|..+...|..++.....+++.|+++++.|+..
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444444444444444433
No 111
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=44.08 E-value=1.1e+02 Score=28.42 Aligned_cols=39 Identities=26% Similarity=0.291 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
.+.|+.|++++..|+.+|.+|+.-+..++.-...|++++
T Consensus 121 h~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 121 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777778888888888777766655555444444443
No 112
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=44.06 E-value=31 Score=22.14 Aligned_cols=16 Identities=44% Similarity=0.563 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7086 324 LEERVKILKGENNELA 339 (376)
Q Consensus 324 LE~kvk~Le~eN~eL~ 339 (376)
|.++|.+|+.+-+.|+
T Consensus 5 lkdevgelkgevralk 20 (27)
T 3v86_A 5 LKDEVGELKGEVRALK 20 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHH
Confidence 3344444443333333
No 113
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.74 E-value=1.2e+02 Score=29.64 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 316 RKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 316 RKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
|.+..++..+.+++.++++|..|+.++..+..++..-++.+.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 432 NAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 344555556666666666666666666665555554444443
No 114
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=43.50 E-value=34 Score=24.34 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVC 350 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~ 350 (376)
+-+.+|..+-+.|+.+...|..++..|.+.+.
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666554
No 115
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=43.47 E-value=84 Score=25.35 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7086 333 GENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 333 ~eN~eL~~ei~~LreEv~~LK 353 (376)
.+..+|..+|...+..+..|+
T Consensus 58 ~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 58 KEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444433
No 116
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=43.11 E-value=68 Score=32.88 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQI 366 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l 366 (376)
..+.|-.+++.++.+..+|..++..+.+++..+=..|-+-...++|+
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~~~vP~ 163 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPV 163 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 55677777777777777777777777766655443333333334443
No 117
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=42.42 E-value=94 Score=27.90 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 314 RKRKLERIANLEERVKILKGENNELAS 340 (376)
Q Consensus 314 RqRKKe~I~~LE~kvk~Le~eN~eL~~ 340 (376)
|.+.-+.|.+|+.++..|..+...++.
T Consensus 85 r~q~se~~~elq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 85 RGHDSEMIGDLQARITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555554444444444433
No 118
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=42.29 E-value=1.3e+02 Score=23.89 Aligned_cols=43 Identities=9% Similarity=0.146 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 315 KRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 315 qRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
-.=...|+.|+.+|..|..++.++.-+++.+.+.-..+-..|.
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455688899999999999999999999888876666555443
No 119
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=41.96 E-value=67 Score=24.24 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhc
Q psy7086 345 LKQQVCSLKEQVMEHV 360 (376)
Q Consensus 345 LreEv~~LKq~Ll~H~ 360 (376)
-.+|+.+|..+|.+|.
T Consensus 37 ~eQEieRL~~LLkqHg 52 (58)
T 3a2a_A 37 KEQEIERLNKLLRQHG 52 (58)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3455666677777775
No 120
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=41.89 E-value=75 Score=26.56 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
|.+=-++.+.++.+-.+|.+++-.|..|++.||.++.-|.
T Consensus 71 I~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~~~~ 110 (114)
T 2xzr_A 71 INENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIKLHH 110 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 4444455666677778888888889999999999987664
No 121
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=41.80 E-value=57 Score=24.01 Aligned_cols=32 Identities=3% Similarity=0.082 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 326 ERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 326 ~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
.++..|..+-..|..+|..|..++..|+..+.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666665544
No 122
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=41.13 E-value=28 Score=34.66 Aligned_cols=63 Identities=24% Similarity=0.183 Sum_probs=36.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q psy7086 303 RQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQI 366 (376)
Q Consensus 303 ReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l 366 (376)
.+||.++..=-. ++.+..+.|-.+++.++.+..+|..++..+.+++..+=..|-+-.+.++|+
T Consensus 49 ~~~n~~sk~i~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~ 111 (421)
T 1ses_A 49 TERNQVAKRVPK-APPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPV 111 (421)
T ss_dssp HHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCS
T ss_pred HHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 456655543222 444566777777777777777777777777766655444433333344443
No 123
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=40.60 E-value=68 Score=27.48 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 325 EERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 325 E~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+.++++|+.|+..|..++.....++.+|+....
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 556888888888888888888889999887654
No 124
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=40.55 E-value=13 Score=36.31 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
++|..||.+|..++.+...|+..+..++.++.+|+++|
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i 41 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKV 41 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666555555555555555543
No 125
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=40.43 E-value=17 Score=34.02 Aligned_cols=46 Identities=13% Similarity=0.064 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 312 KCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 312 KCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
|+|+-+....+++-.+.+.+..+...|..++..++.++..|+..+.
T Consensus 134 ~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 134 HFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666666666666666666666666666666666655555555544
No 126
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=40.40 E-value=51 Score=25.94 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQV 349 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv 349 (376)
..++..|+.+-..|+.+...|..++..|+.-+
T Consensus 42 ~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777777776543
No 127
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=40.33 E-value=67 Score=24.90 Aligned_cols=22 Identities=36% Similarity=0.315 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7086 336 NELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 336 ~eL~~ei~~LreEv~~LKq~Ll 357 (376)
..|..++..|.+++..|+..+.
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555443
No 128
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=40.05 E-value=84 Score=24.93 Aligned_cols=23 Identities=13% Similarity=0.210 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 325 EERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 325 E~kvk~Le~eN~eL~~ei~~Lre 347 (376)
+.++..|+.+..+|..++..|+.
T Consensus 77 ~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 77 KNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 129
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=39.72 E-value=87 Score=26.83 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
...+..|-.++..+..++.++..++..|++++..|...+.
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555556666666666666655543
No 130
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=39.33 E-value=29 Score=22.21 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 330 ILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 330 ~Le~eN~eL~~ei~~LreEv~~L 352 (376)
.|+.+--+|+.++..|++|+..|
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 34555555666666666555544
No 131
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=38.78 E-value=1.2e+02 Score=22.70 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=28.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 300 ERKRQRNRVAASKCRKRKLERIANL----EERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 300 eRRReRNRvAAsKCRqRKKe~I~~L----E~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
+....|||.=|...=+.|.+.+... .+.+...+.+..+|+..+..|+-|+..||
T Consensus 19 E~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 19 ESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456788877766555554433222 12233344555555555555555555544
No 132
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=38.76 E-value=35 Score=34.42 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=38.2
Q ss_pred HHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q psy7086 302 KRQRNRVAASKCRK-RKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQI 366 (376)
Q Consensus 302 RReRNRvAAsKCRq-RKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l 366 (376)
+.+||.++..=-.. ++.+..+.|-.+++.++.+..+|..++..+.+++..+=..|-+-.+.++|+
T Consensus 51 ~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP~ 116 (455)
T 2dq0_A 51 RHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPV 116 (455)
T ss_dssp HHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCC
T ss_pred HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 35666655443322 222456677777777777777777777777766655544444444444544
No 133
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.23 E-value=1.7e+02 Score=28.49 Aligned_cols=43 Identities=19% Similarity=0.071 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 310 ASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 310 AsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
+.+--+...++++.|+++-+.++.+..++..++..-++.+..+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 4444455566666666666666666666666555554444333
No 134
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=38.23 E-value=55 Score=26.07 Aligned_cols=39 Identities=26% Similarity=0.219 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 322 ANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
.+|-.+|++|..++..|+.++..+++-...++..+.++-
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888888777766543
No 135
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=37.94 E-value=67 Score=25.13 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 324 LEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 324 LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
||++|..++....+=+.+-..++.|+..+-+.|
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333333334444444444333
No 136
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=37.43 E-value=56 Score=26.55 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
...++ +...|+.++..|..++..|+.|...++..+..
T Consensus 44 ~Kr~~-q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~ 80 (90)
T 2wt7_B 44 YKRVQ-QKHHLENEKTQLIQQVEQLKQEVSRLARERDA 80 (90)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44453 44788899999999999999998888876643
No 137
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=36.95 E-value=53 Score=32.73 Aligned_cols=42 Identities=14% Similarity=0.036 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
+++++|+.+.+.++.++.++..++.....+...|.+.|++-.
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 17 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334445555555555555555555444444455555555443
No 138
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=36.47 E-value=60 Score=22.21 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 331 LKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 331 Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+..+|......|+.|+.+...|..+|.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 345667777777777777777766653
No 139
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=36.11 E-value=49 Score=27.47 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 331 LKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 331 Le~eN~eL~~ei~~LreEv~~LK 353 (376)
...++..|+.++..|+.|+.++|
T Consensus 94 e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 94 EKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555555555443
No 140
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=36.03 E-value=56 Score=25.28 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
.+.+..=+..+.+|+.++.+=..+|..|+.++..+.+.+.
T Consensus 17 ~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 17 AKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567777778888888888888888888888888877765
No 141
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=35.80 E-value=1e+02 Score=24.91 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
..++.++..|..++.-|..++..+.+.+...+..|
T Consensus 40 ~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kL 74 (101)
T 3u1c_A 40 KQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555444444444444433
No 142
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=35.61 E-value=1.2e+02 Score=24.27 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
.+.|.+|.-+|.+++.+...-..++..-++|++.|+++|..
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45667777777777777766666666777788888877654
No 143
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.99 E-value=81 Score=24.97 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
+++.++.+++.|+.+...+..++..|+.++..+
T Consensus 78 ~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 78 KIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557777777777777777777777655543
No 144
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=34.92 E-value=1.5e+02 Score=23.79 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVASKL 345 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~L 345 (376)
.+|...+..++.++..|+.++..|
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333333333
No 145
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.81 E-value=1.5e+02 Score=23.26 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
+..--+=+..|+.++..|..++..|+.+...|+..|.+=.
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333445677888999999999999999999999886533
No 146
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=34.60 E-value=1.8e+02 Score=23.41 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 334 ENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 334 eN~eL~~ei~~LreEv~~LKq~L 356 (376)
+...-..+|..|.+++...|..|
T Consensus 52 el~~h~~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 52 EISHHAKEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 147
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=34.34 E-value=1.1e+02 Score=24.48 Aligned_cols=15 Identities=7% Similarity=-0.097 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy7086 328 VKILKGENNELASVA 342 (376)
Q Consensus 328 vk~Le~eN~eL~~ei 342 (376)
+..|...+..|..++
T Consensus 46 i~sL~kKiq~lE~el 60 (101)
T 3u59_A 46 QQGLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 148
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=34.29 E-value=1.1e+02 Score=22.35 Aligned_cols=34 Identities=26% Similarity=0.239 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
..+..|..+-..|..-..+-+.++..|+++|..|
T Consensus 16 ~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 16 ARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666677777777777777777777777765
No 149
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=33.53 E-value=42 Score=24.17 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVA 342 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei 342 (376)
.+++.|+.+++.|+.....|...+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888777777666543
No 150
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=33.41 E-value=1.2e+02 Score=30.40 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
+.+.+||..+...+.+...|+..+..++..+..|+++|.+
T Consensus 91 ~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~ 130 (409)
T 1m1j_C 91 EEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQ 130 (409)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666666665544
No 151
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.93 E-value=31 Score=27.87 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q psy7086 334 ENNELASVASKLKQQVCSLKEQVMEHVHNGCQIN 367 (376)
Q Consensus 334 eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l~ 367 (376)
++-++--+.+.+++=-+.|-..|.... ||++.
T Consensus 42 ~hI~~Lh~YNeiKD~gq~L~g~iA~~r--gv~~~ 73 (85)
T 3viq_B 42 KHIDLLHTYNEIRDIALGMIGKVAEHE--KCTSV 73 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--TSCGG
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHc--CCcHH
Confidence 344444455555666666666666666 45443
No 152
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=32.77 E-value=1.6e+02 Score=26.61 Aligned_cols=63 Identities=14% Similarity=0.277 Sum_probs=40.7
Q ss_pred HHHHHHhhhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 298 KIERKRQRNRVAASKCRKR---------KLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 298 KreRRReRNRvAAsKCRqR---------KKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
+.++..+|-|+-|.||--- =++...+|-+.+..|+.+.=+|...+..-.-|+..|+..|..+.
T Consensus 35 ~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 35 AEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 3344456667777777221 12455566666777777777777777766777777777777775
No 153
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.64 E-value=56 Score=33.54 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=36.4
Q ss_pred HHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q psy7086 302 KRQRNRVAASKCRK-RKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQI 366 (376)
Q Consensus 302 RReRNRvAAsKCRq-RKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l 366 (376)
+.+||.++..--.. +..+.++.|..+++.|+.+..+|..++..+.+++..+=..|-+-...++|+
T Consensus 53 ~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~ 118 (485)
T 3qne_A 53 NKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVD 118 (485)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCC
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 45667665433222 222445667777777777777777777777766654433333333334443
No 154
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=32.62 E-value=48 Score=26.38 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 324 LEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 324 LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
||++|..++....+=+.+-..++.|+..+-+.|-
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld 58 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARAEVGRAAQLLD 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444443
No 155
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=32.53 E-value=77 Score=29.34 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy7086 291 MESQERIKIERKRQRNRVA--ASKCRKRKLERIANLEERVKILK-GENNELASVAS 343 (376)
Q Consensus 291 ~eeqE~iKreRRReRNRvA--AsKCRqRKKe~I~~LE~kvk~Le-~eN~eL~~ei~ 343 (376)
.++.|.||.+|.+.+-|++ ...++++|.+++++-+..+++.= ..|..+...+.
T Consensus 96 eeEPEsIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~ka 151 (205)
T 3lvh_D 96 TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 151 (205)
T ss_dssp TBSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888887777775 55778888888888888776544 45555554443
No 156
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=32.27 E-value=1.6e+02 Score=36.95 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 309 AASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 309 AAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
+|..-=..+++.+.+|+++++.|+.+-.++..+...|++++...+..|
T Consensus 2025 ~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl 2072 (3245)
T 3vkg_A 2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKV 2072 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455666777777777777766666666666666655554443
No 157
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.16 E-value=1.3e+02 Score=24.28 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7086 338 LASVASKLKQQVCSLK 353 (376)
Q Consensus 338 L~~ei~~LreEv~~LK 353 (376)
|..++..|+.++..|+
T Consensus 58 l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 58 KDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 158
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=32.05 E-value=1.4e+02 Score=22.98 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+...++..+..|...+..|..++..+.+.+...-..|.
T Consensus 35 ~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 35 RSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666665555555544443
No 159
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=31.96 E-value=1.4e+02 Score=21.30 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 326 ERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 326 ~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
.++..+......+...++..++++..++..+
T Consensus 26 ~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 26 DEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555555555444
No 160
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=31.90 E-value=1.2e+02 Score=21.71 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVA 342 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei 342 (376)
+..+||+++..|+.||.-|+..+
T Consensus 18 ~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 18 KNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHh
Confidence 45677777777777777666543
No 161
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=31.82 E-value=71 Score=28.99 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
+.+.+|+.++..|+.+|..|..+.+...+
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544443
No 162
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=31.72 E-value=1.2e+02 Score=24.81 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
++.|+..++.++.....++..+..+.+++.++-+
T Consensus 97 ~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 97 KNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666666666666666666666665544
No 163
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=31.35 E-value=70 Score=31.10 Aligned_cols=12 Identities=17% Similarity=0.005 Sum_probs=7.0
Q ss_pred cCChhhhHHHHh
Q psy7086 211 FTTPEIEKFIMQ 222 (376)
Q Consensus 211 LaSPELErliiq 222 (376)
+.|||--+.+..
T Consensus 298 l~s~e~q~~~~~ 309 (471)
T 3mq9_A 298 LLTDEGLEAVNK 309 (471)
T ss_dssp TSSHHHHHHHHH
T ss_pred hcCHHHHHHHHh
Confidence 567776555444
No 164
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=31.35 E-value=41 Score=27.55 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 328 VKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 328 vk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
.+.|+.+..+|+.++..+++|+..|++
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345566666666666666666666654
No 165
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=31.21 E-value=1.7e+02 Score=29.62 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 316 RKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 316 RKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
+=++.+..+|..+...+....+|+..+......+..|++.|....
T Consensus 88 kml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~ 132 (411)
T 3ghg_C 88 KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLE 132 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666665433
No 166
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=31.07 E-value=89 Score=28.39 Aligned_cols=63 Identities=10% Similarity=0.154 Sum_probs=45.8
Q ss_pred HHHHHhhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy7086 299 IERKRQRNRVAASKCR--------KRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVH 361 (376)
Q Consensus 299 reRRReRNRvAAsKCR--------qRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~ 361 (376)
.++..+|-|+-|.||- ..=++...+|-+.+..|+.+.=+|...+..-.-|+..|+..|..+.+
T Consensus 34 e~k~eeKkkiLaER~kPLnid~se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDLrG 104 (182)
T 1ytz_I 34 AAKEVEKQNYLAEHSPPLSLPGSMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLRG 104 (182)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGTC
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3344566677776661 11125667788888888888888888888888899999998888864
No 167
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=30.50 E-value=92 Score=22.22 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7086 336 NELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 336 ~eL~~ei~~LreEv~~LKq~L 356 (376)
..|+.++..|...+..||..+
T Consensus 23 aaleselqalekklaalkskl 43 (48)
T 1g6u_A 23 AALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 168
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=29.85 E-value=2.9e+02 Score=24.39 Aligned_cols=42 Identities=21% Similarity=0.178 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
..++.|.+++..|.-++..+..++..|++|...|-+-.|...
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888888877777666544
No 169
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=29.74 E-value=2.4e+02 Score=24.99 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=10.1
Q ss_pred CCCcchHHHHHHHHHHhhhHHH
Q psy7086 288 PIDMESQERIKIERKRQRNRVA 309 (376)
Q Consensus 288 PiD~eeqE~iKreRRReRNRvA 309 (376)
.+..|++..++..+..-|....
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~ 88 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTS 88 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444433
No 170
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=29.74 E-value=1.4e+02 Score=24.82 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASK-------LKQQVCSLKEQVM 357 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~-------LreEv~~LKq~Ll 357 (376)
+.++++++.+..+..++.+...++.. |+.++..|+..|.
T Consensus 37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554444443 4444444444444
No 171
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.49 E-value=98 Score=30.89 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
.++..||.+.+.|..++..++.+...++.|+..++..+....
T Consensus 49 ~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 49 FKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345567777777777777788777778888777777765443
No 172
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=28.88 E-value=1.2e+02 Score=26.87 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q psy7086 290 DMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILK---GENNELA 339 (376)
Q Consensus 290 D~eeqE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le---~eN~eL~ 339 (376)
++.+=+..+.||.+.++|| ++|++++.+|..+...++ .+|..+.
T Consensus 3 s~qe~~~Le~Ek~~~~~rI------~~K~~~LqeL~~Q~vafknLv~RN~~~e 49 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERI------KQKQSQLQELILQQIAFKNLVQRNRHAE 49 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 173
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=28.55 E-value=67 Score=29.44 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 317 KLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 317 KKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
|..+|+.|+.++..++.+-.........-.+.+ .++.-+.+|.
T Consensus 39 k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i-~i~~DL~e~L 81 (190)
T 4emc_A 39 KATEIKQLQKQIDSLNAQVKELKTQTSQQAENS-EVIKDLYEYL 81 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh-hHHHHHHHHc
Confidence 345566666666666665555555554433333 3333344454
No 174
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=28.49 E-value=1.9e+02 Score=23.29 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELAS 340 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ 340 (376)
+.|+.+++++..|+.+|.+|+.
T Consensus 45 ~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 45 KEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666655553
No 175
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=28.48 E-value=2.7e+02 Score=24.74 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy7086 334 ENNELASVASKLKQQVCSL 352 (376)
Q Consensus 334 eN~eL~~ei~~LreEv~~L 352 (376)
..++|..++..|+.++...
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~ 132 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQ 132 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 176
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=28.18 E-value=1.5e+02 Score=21.62 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVASKLK 346 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~Lr 346 (376)
..|-.+|..|+....++..|+..|+
T Consensus 14 ~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 14 IQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHH
Confidence 3344444444444444444444444
No 177
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=28.08 E-value=79 Score=26.69 Aligned_cols=46 Identities=7% Similarity=0.115 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQ 365 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~ 365 (376)
..+-|+.+.+.++.+..+|......|...+..+++.+.....+.-+
T Consensus 96 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~ 141 (148)
T 3gpv_A 96 RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSANATTKE 141 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 4456777777777888888888888888888887777666544433
No 178
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=28.01 E-value=2.5e+02 Score=26.10 Aligned_cols=42 Identities=17% Similarity=0.344 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
++...|+.++.....|+..+.+.+...|++.++++...-.|.
T Consensus 178 ~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 178 GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 477889999999999999999999999999999998877764
No 179
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=27.81 E-value=1.8e+02 Score=24.16 Aligned_cols=41 Identities=15% Similarity=0.284 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEH 359 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H 359 (376)
+...+|-+++..|+.+.=+|...+..-.-|+..|+..|.++
T Consensus 49 e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 49 DKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 56677888888888888888888888888888888888877
No 180
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=26.93 E-value=1.1e+02 Score=23.92 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
..|++|-+.|-....+...|..++..|.+.+..+..
T Consensus 28 ~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 28 QALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 356777777777777777777777777776665554
No 181
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.75 E-value=1.9e+02 Score=23.54 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKL 345 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~L 345 (376)
++.|+..+..+..+...+...+..+
T Consensus 104 ~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 104 LQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 182
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=26.47 E-value=1.1e+02 Score=31.20 Aligned_cols=28 Identities=25% Similarity=0.205 Sum_probs=16.1
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 325 EER-VKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 325 E~k-vk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
-.+ ++.++.+..+|..++..+.+++..+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5666666666666666666555443
No 183
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=26.34 E-value=84 Score=24.21 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q psy7086 327 RVKILKGENNELASVASKLKQQVCSLKEQVMEHVHNGCQI 366 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~~gC~l 366 (376)
++++.-.|.++|++.+-.|++|++..+..++.-. .||.
T Consensus 4 Elr~iLqERNELKa~vf~lqeEL~yY~~e~l~~~--~~p~ 41 (65)
T 1yhn_B 4 EFEQILQERNELKAKVFLLKEELAYFQRELLTDH--RVPS 41 (65)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT--CCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc--cccH
Confidence 4556667888999999999999999999887543 3553
No 184
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.72 E-value=1.7e+02 Score=29.03 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
++.++.+++.++.+..+...+...|..++..||.-
T Consensus 26 ~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 26 NEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34444444444444444444555555555555543
No 185
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=25.68 E-value=1.1e+02 Score=20.35 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 328 VKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 328 vk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
|..|+.+-..-..+.-+|.+|+.+|.
T Consensus 3 vaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55666666666666666666666654
No 186
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=25.68 E-value=1.1e+02 Score=23.01 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVASKLKQ 347 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~Lre 347 (376)
..|-.+|..|+..+.+...+|..|+.
T Consensus 21 ~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 21 VQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777766664
No 187
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=25.46 E-value=2.5e+02 Score=22.08 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 307 RVAASKCRKRKLER----------IANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 307 RvAAsKCRqRKKe~----------I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
+.+|..+|.|=-+. +..|...++.+.-...+|..++..|++|+.-||.
T Consensus 27 ~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 27 AEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66777777775544 3445555666666778888888888888887774
No 188
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.45 E-value=1.8e+02 Score=23.93 Aligned_cols=9 Identities=33% Similarity=0.202 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy7086 348 QVCSLKEQV 356 (376)
Q Consensus 348 Ev~~LKq~L 356 (376)
.+.+|+.+|
T Consensus 84 kn~~L~~qL 92 (97)
T 2eqb_B 84 LNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 189
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=25.42 E-value=37 Score=24.76 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNELA 339 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~ 339 (376)
..+++.||.+++.|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3677788888877776665543
No 190
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=25.42 E-value=67 Score=30.86 Aligned_cols=41 Identities=17% Similarity=0.358 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
.|..++.++..++..-+++...|..|..+++++|.++.-|.
T Consensus 224 ~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (268)
T 2yo3_A 224 KIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIKLHH 264 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 56667777777788888888888999999999998877654
No 191
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=25.33 E-value=59 Score=24.92 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASV 341 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~e 341 (376)
++|..|+.++..|+.++.+|+.+
T Consensus 57 ~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
No 192
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=25.13 E-value=2.6e+02 Score=22.17 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 311 SKCRKRKLERIANLEERVKILKGENNELA 339 (376)
Q Consensus 311 sKCRqRKKe~I~~LE~kvk~Le~eN~eL~ 339 (376)
-|-|.|-++.+..-+.+++.|..-..+|.
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~ 38 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLK 38 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455555555555555555555444443
No 193
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.84 E-value=80 Score=22.05 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7086 331 LKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 331 Le~eN~eL~~ei~~LreEv~~L 352 (376)
.+.+...|..++..|++|-.+|
T Consensus 13 tkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 13 TKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544
No 194
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=24.70 E-value=2e+02 Score=20.69 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVAS 343 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~ 343 (376)
+++..||.-++.|..+-..|.++..
T Consensus 5 ekv~~Le~~ld~LqTr~ArLlae~~ 29 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRFARLLAEYN 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544443
No 195
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.68 E-value=1.1e+02 Score=23.90 Aligned_cols=30 Identities=10% Similarity=0.251 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVC 350 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~ 350 (376)
++.++.+++.|+.+...+..++..|+..+.
T Consensus 74 ~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 74 LETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666665543
No 196
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=24.66 E-value=1.3e+02 Score=27.39 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy7086 292 ESQERIKIERKRQRNRVA--ASKCRKRKLERIANLEERVKILK-GENNELASVAS 343 (376)
Q Consensus 292 eeqE~iKreRRReRNRvA--AsKCRqRKKe~I~~LE~kvk~Le-~eN~eL~~ei~ 343 (376)
++.|.||.+|.+++-|++ ...++.+|.+.+++-+..+++.= ..|..+...+.
T Consensus 82 EEPEsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKnKa 136 (190)
T 3lvg_D 82 QEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136 (190)
T ss_dssp TSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444568888877777665 55778888888888888886654 45555554443
No 197
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=24.63 E-value=2.9e+02 Score=22.69 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 307 RVAASKCRKRKLER----------IANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 307 RvAAsKCRqRKKe~----------I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
+.++..+|.|=.+. +..|...++...-...+|..++..|++|+.-||..-.
T Consensus 47 ~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 47 AEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777776654332 3344445555555667888999999999999887644
No 198
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=24.24 E-value=1.6e+02 Score=19.96 Aligned_cols=31 Identities=13% Similarity=0.347 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 327 RVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 327 kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
++...+.+......++...++|+...|-++.
T Consensus 3 kiaaikeeqaaieeeiqaikeeiaaikylia 33 (36)
T 1bb1_B 3 KIAAIKEEQAAIEEEIQAIKEEIAAIKYLIA 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777888888887776654
No 199
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.15 E-value=1.2e+02 Score=30.20 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
..+|+++|.++.........|..+...|..++..++..+..
T Consensus 24 ~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~ 64 (405)
T 4b4t_J 24 EQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRL 64 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666666666666553
No 200
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=24.03 E-value=2.2e+02 Score=26.43 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhc
Q psy7086 318 LERIANLEERVKILKGENNELASVASKLKQ---QVCSLKEQVMEHV 360 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL~~ei~~Lre---Ev~~LKq~Ll~H~ 360 (376)
++.-..|..++..++.++..|+.++..|++ ++..|-.+|.+-.
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677888888888888888777765554 4444445454444
No 201
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=24.00 E-value=38 Score=24.86 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQV 349 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv 349 (376)
+.+||..-..|+.....|+..+..|...+
T Consensus 26 varlendnanlekdianlekdianlerdv 54 (56)
T 3he4_A 26 VARLENDNANLEKDIANLEKDIANLERDV 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHhh
Confidence 44566666677777777777777776654
No 202
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=23.96 E-value=1.3e+02 Score=28.84 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVAS 343 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~ 343 (376)
.++.|+.+.+.|+.+..+|+.++.
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e 209 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERS 209 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 203
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.46 E-value=70 Score=23.40 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 328 VKILKGENNELASVASKLKQQVCSLKEQ 355 (376)
Q Consensus 328 vk~Le~eN~eL~~ei~~LreEv~~LKq~ 355 (376)
++.+......|..++..|++++..|+..
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556666777777777777766654
No 204
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=23.44 E-value=2e+02 Score=20.32 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 323 NLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 323 ~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
+|..-+.+|+.+|.+|+.--+.|+=-.+.|.-.|..|.
T Consensus 7 elknyiqeleernaelknlkehlkfakaelefelaahk 44 (46)
T 3he4_B 7 ELKNYIQELEERNAELKNLKEHLKFAKAELEFELAAHK 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 34444445555555555444444444455555555553
No 205
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.43 E-value=69 Score=26.18 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 320 RIANLEERVKILKGENNELASVASKLK 346 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~Lr 346 (376)
++..|+.+.+.++.+..+|+.++..|+
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555566666555554
No 206
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=23.32 E-value=1.9e+02 Score=22.93 Aligned_cols=6 Identities=0% Similarity=0.169 Sum_probs=2.3
Q ss_pred hHHHHH
Q psy7086 306 NRVAAS 311 (376)
Q Consensus 306 NRvAAs 311 (376)
+++..+
T Consensus 34 ~~Le~s 39 (79)
T 3cvf_A 34 RSLEEA 39 (79)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334333
No 207
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=23.14 E-value=3.2e+02 Score=22.58 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=38.7
Q ss_pred HhhhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7086 303 RQRNRVAASKCRKRK---------LERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEH 359 (376)
Q Consensus 303 ReRNRvAAsKCRqRK---------Ke~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H 359 (376)
.+|-|+-|.||.--- ++...+|-+.+..|+.+.=+|...+..-.-|+..|+..|.++
T Consensus 24 eeKkkiLaER~kpL~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 24 EKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 456677777774332 234555666667777777777777777777888888887766
No 208
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=23.06 E-value=1.4e+02 Score=22.78 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCcccc
Q psy7086 330 ILKGENNELASVASKLKQQVCSLKEQVMEHVH-----NGCQINV 368 (376)
Q Consensus 330 ~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~~-----~gC~l~~ 368 (376)
.|+.+..+|..++..|+.....|...+....+ ..|+++.
T Consensus 43 ~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~~~~~~~C~i~~ 86 (99)
T 1q08_A 43 IVQERLQEVEARIAELQSMQRSLQRLNDACCGTAHSSVYCSILE 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSBGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchH
Confidence 34444444444444444444445444432221 2487764
No 209
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.73 E-value=1.9e+02 Score=26.23 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
+.+.-+=+.+..|+.+|..|..+...|+.|....-.++
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68889999999999999999999999998877655544
No 210
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.60 E-value=1.9e+02 Score=28.52 Aligned_cols=41 Identities=24% Similarity=0.236 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 320 RIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 320 ~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
...+|+.+++.++.++.+|..++.....+...|.+.+.+-.
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 18 KIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445555555555555555544444444455555555443
No 211
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.15 E-value=2.2e+02 Score=25.71 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 310 ASKCRKRKLERIANLEERVKILKGENNELASVA 342 (376)
Q Consensus 310 AsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei 342 (376)
|-++-.+-...+++||+++...+.++..+..++
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666666666665555555544
No 212
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=22.13 E-value=37 Score=31.57 Aligned_cols=35 Identities=29% Similarity=0.237 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q psy7086 324 LEERVKILKGENNELASVA---SKLKQQVCSLKEQVME 358 (376)
Q Consensus 324 LE~kvk~Le~eN~eL~~ei---~~LreEv~~LKq~Ll~ 358 (376)
|.++-+.|+.||.+|+.+. ..|++|..+||.+|.-
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESLDI 61 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444445555555554333 4566677788777653
No 213
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=22.11 E-value=2.7e+02 Score=21.29 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 304 QRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 304 eRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
.+|-+||+..| |..|-.--..|..|.+.|..++..|..|...|+
T Consensus 18 vK~ALaaSeAk------iQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 18 LKKALATSEAK------VQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHH------HHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 45667887544 333333334444455555555555555555544
No 214
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.07 E-value=2.5e+02 Score=22.60 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVAS 343 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~ 343 (376)
-.+|...+..+..+...|+.++.
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~ 62 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENK 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 215
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=21.96 E-value=1.1e+02 Score=25.75 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 322 ANLEERVKILKGENNELASVASKLKQQVCSLK 353 (376)
Q Consensus 322 ~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LK 353 (376)
.++.++++.|..++.+|+.++..|+.++...+
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777777777777777777777766654
No 216
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=21.96 E-value=52 Score=27.77 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy7086 336 NELASVASKLKQQVCSLKEQVME 358 (376)
Q Consensus 336 ~eL~~ei~~LreEv~~LKq~Ll~ 358 (376)
.+|.+++..|+-|...||++|..
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666777777777777765
No 217
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=20.63 E-value=2.8e+02 Score=23.33 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q psy7086 314 RKRKLERIANLEERVKILKGEN-------NELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 314 RqRKKe~I~~LE~kvk~Le~eN-------~eL~~ei~~LreEv~~LKq~L 356 (376)
+..-.+.|.-|+.+++.++..- .++..+...|.+++..|...+
T Consensus 57 ~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 57 HKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444567888888888777533 445555666666666665543
No 218
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=20.55 E-value=3.7e+02 Score=26.61 Aligned_cols=67 Identities=9% Similarity=0.184 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q psy7086 294 QERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQ-VCSLKEQVMEHV 360 (376)
Q Consensus 294 qE~iKreRRReRNRvAAsKCRqRKKe~I~~LE~kvk~Le~eN~eL~~ei~~LreE-v~~LKq~Ll~H~ 360 (376)
.+..|.+.+.++-+..|.+++..=+..+..++..-..+..+...+-..+..|.++ +..||+.|..+.
T Consensus 185 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L~~y~ 252 (486)
T 3haj_A 185 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQ 252 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666777777788888888777778888777666666666666666666544 677788777643
No 219
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=20.53 E-value=66 Score=27.95 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSL 352 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~L 352 (376)
+.+..+-.+++.|..+..+|..++.+|++|+..+
T Consensus 98 d~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~~~ 131 (140)
T 3iyn_Q 98 DKLTALLAQLDSLTRELNVVSQQLLDLRQQVSAL 131 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666677777778888888888888776554
No 220
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=20.49 E-value=2.9e+02 Score=21.09 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 321 IANLEERVKILKGENNELASVASKLKQQVCSLKE 354 (376)
Q Consensus 321 I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq 354 (376)
+..-|.++..|-.-|..|..|+..|+.++..|..
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 3444566666666666666666666666665544
No 221
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=20.45 E-value=2.4e+02 Score=25.45 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~L 356 (376)
+-|..-+..|..|+.++..|+.++...+++...+.+.|
T Consensus 128 eli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eL 165 (175)
T 3mud_A 128 ELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQML 165 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777777777777766666666655555544
No 222
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=20.28 E-value=2.7e+02 Score=27.10 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7086 319 ERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEHV 360 (376)
Q Consensus 319 e~I~~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll~H~ 360 (376)
.+++.|..+.+.+.....++.-.+..+..-...+.+.|..|.
T Consensus 224 ~rle~L~~ere~~~e~~a~~afd~qk~qRl~q~~~~fv~~hl 265 (302)
T 3ibp_A 224 SRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSRFIGSHL 265 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhch
Confidence 455666666666666666666666666666666766666665
No 223
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.23 E-value=1.6e+02 Score=20.58 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy7086 318 LERIANLEERVKILKGENNEL 338 (376)
Q Consensus 318 Ke~I~~LE~kvk~Le~eN~eL 338 (376)
|+.|..|+.++..|+.+...|
T Consensus 14 keQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777666554
No 224
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.13 E-value=1.7e+02 Score=25.87 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7086 323 NLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357 (376)
Q Consensus 323 ~LE~kvk~Le~eN~eL~~ei~~LreEv~~LKq~Ll 357 (376)
.++.++..|+.+..+-...+..|+.++..||..+.
T Consensus 112 ~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 112 AIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666667777788888888887553
Done!