RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7086
(376 letters)
>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor. The Pfam entry
includes the basic region and the leucine zipper region.
Length = 64
Score = 71.6 bits (176), Expect = 5e-16
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 294 QERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLK 353
++ +K ER+RQ+NR AA + R RK I LEE+VK L+ EN L S +LK++ LK
Sbjct: 1 EKELKRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKECAKLK 60
Query: 354 EQVM 357
+
Sbjct: 61 SENE 64
>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper.
Length = 65
Score = 63.4 bits (155), Expect = 4e-13
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 294 QERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLK 353
+E K R+R+RNR AA + R+RK I LE +V+ L+ EN L +L++++ LK
Sbjct: 1 EEDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60
Query: 354 EQVME 358
++ E
Sbjct: 61 SELEE 65
>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and
multimerization region of GCN4 and related proteins.
Basic leucine zipper (bZIP) transcription factors act in
networks of homo- and hetero-dimers in the regulation in
a diverse set of cellular pathways. Classical leucine
zippers have alpha helices with leucine residues 7 amino
acids apart, which stabilize dimerization with a
parallel leucine zipper domain. Dimerization creates a
pair of basic regions that bind DNA and undergo
conformational change. GCN4 was identified in
Saccharomyces cerevisiae from mutations in a deficiency
in activation with the general amino acid control
pathway. GCN4 encodes a trans-activator of amino acid
biosynthetic genes containing 2 acidic activation
domains and a C-terminal bZIP domain, comprised of a
basic alpha-helical DNA-binding region and a coiled-coil
dimerization region.
Length = 54
Score = 61.2 bits (149), Expect = 2e-12
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 297 IKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVC 350
RKR RNR AA + R RK+ER+ LE++V+ L EN++L +LK+ +
Sbjct: 1 DPRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLEDEVDRLKKALA 54
>gnl|CDD|217814 pfam03957, Jun, Jun-like transcription factor.
Length = 236
Score = 57.3 bits (138), Expect = 2e-09
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 167 QPGMDNSNSQGNKNAKKPRLRLPNHPMLNLNI--PVLSSPDLNKLNFTTPEIEKFIMQ-N 223
+ + + S+ N A KP RL N I +L+SPDL L +PE+E+ I+Q N
Sbjct: 34 KQSLTLNLSEPNAAALKPGARLNPKGAKNGRIFAGLLNSPDLGLLKLASPELERLIIQSN 93
Query: 224 VSSNQTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKNN 262
TPTP Q L+ + +EQE A+ F +L
Sbjct: 94 GLVTTTPTPGQFLYPKAVTDEQEGFAEGFVKALEDLHKQ 132
Score = 56.2 bits (135), Expect = 4e-09
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 6 SQGNKNAKKPRLRLPNHPMLNLNI--PVLSSPDLNKLNFTTPEIEKFIMQ-NVSSNQTPT 62
S+ N A KP RL N I +L+SPDL L +PE+E+ I+Q N TPT
Sbjct: 42 SEPNAAALKPGARLNPKGAKNGRIFAGLLNSPDLGLLKLASPELERLIIQSNGLVTTTPT 101
Query: 63 PTQVLFSTNIMEEQELMAKSFQDTYNEL-KNTQV 95
P Q L+ + +EQE A+ F +L K Q+
Sbjct: 102 PGQFLYPKAVTDEQEGFAEGFVKALEDLHKQNQL 135
>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper.
Length = 54
Score = 42.6 bits (101), Expect = 6e-06
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNEL 338
+ +R+RN AA + R++K +R LEERVK L+ EN +L
Sbjct: 4 EYRDRRRRNNEAARRSREKKKQREEELEERVKELEEENAQL 44
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 33.9 bits (78), Expect = 0.14
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 292 ESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCS 351
++ E +R+ V + +K + E + LEE LK E EL KL+ ++
Sbjct: 403 PREKEGTEEEERREITVYEKRIKKLE-ETVERLEEENSELKRELEELKREIEKLESELER 461
Query: 352 LKEQV 356
+ +V
Sbjct: 462 FRREV 466
>gnl|CDD|227502 COG5175, MOT2, Transcriptional repressor [Transcription].
Length = 480
Score = 32.7 bits (74), Expect = 0.32
Identities = 24/123 (19%), Positives = 49/123 (39%)
Query: 11 NAKKPRLRLPNHPMLNLNIPVLSSPDLNKLNFTTPEIEKFIMQNVSSNQTPTPTQVLFST 70
K P L N + P + + + + T S
Sbjct: 293 VFKAPDKILFPPLDFTNTQSATPVTLSNSSSINLPTLNDSLGHHTETTTTTNTNATSHSH 352
Query: 71 NIMEEQELMAKSFQDTYNELKNTQVLFSTNIMEEQELMAKSFQDTYNELKNTSDSSIQSK 130
++Q L A+ ++D Y+ L N L S + +++ + KS ++TY + SD+++ +K
Sbjct: 353 GSKKKQSLAAEEYKDPYDALGNAARLHSLSNYQKRPISIKSDEETYKKWDKKSDNTLANK 412
Query: 131 LLK 133
L++
Sbjct: 413 LVE 415
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 31.2 bits (71), Expect = 0.77
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 21/94 (22%)
Query: 13 KKPRLRLPNHPMLNLNIPVLSSPDLNKLNFTTPEIEKFIMQNVSSNQTPTPTQVLFSTNI 72
P + + + P L+I T + FI Q + + V+FS++I
Sbjct: 150 HDPSILVLDEPTSGLDI------------RTRRKFHDFIKQLKNEGRA-----VIFSSHI 192
Query: 73 MEEQELMAKSFQDTYNELKNTQVLFSTNIMEEQE 106
M+E E + D L +V+ +I
Sbjct: 193 MQEVEALC----DRVIVLHKGEVVLEGSIEALDA 222
Score = 28.9 bits (65), Expect = 3.4
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 17/71 (23%)
Query: 182 KKPRLRLPNHPMLNLNIPVLSSPDLNKLNFTTPEIEKFIMQNVSSNQTPTPTQVLFSTNI 241
P + + + P L+I T + FI Q + + V+FS++I
Sbjct: 150 HDPSILVLDEPTSGLDI------------RTRRKFHDFIKQLKNEGRA-----VIFSSHI 192
Query: 242 MEEQELMAKSF 252
M+E E +
Sbjct: 193 MQEVEALCDRV 203
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 31.1 bits (71), Expect = 0.88
Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 29/136 (21%)
Query: 231 TPTQVLFSTNIMEEQELMAKSFQDTYNELKNNTSDSSSMLIKDEPAHSIASTSPPMSPID 290
T T++ + E +E + + ++ EL+ +L K +
Sbjct: 319 TKTEIEVGVDFPELKEELKE-LEEELKELEEELEKIKKLLKK----------------LP 361
Query: 291 MESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVC 350
+++ ++ E++ Q ++ +K ++ E + LEE +K LK E L S K+
Sbjct: 362 KKARGQLPPEKREQLEKLLETK--EKLSEELEELEEELKELKEELESLYSEG-KIS---- 414
Query: 351 SLKEQVMEHVHNGCQI 366
V + ++ G +I
Sbjct: 415 -----VNKTIYPGVKI 425
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 30.9 bits (70), Expect = 1.3
Identities = 49/241 (20%), Positives = 86/241 (35%), Gaps = 17/241 (7%)
Query: 33 SSPDLNKLNFTTPEIEKFIMQNVSSNQTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKN 92
S+ D N F+T + + S+N + L TNI Q L + D Y+
Sbjct: 69 SNQDNNDKKFSTIDSST----SDSNNIIDFIYKNLPQTNI--NQLLTKNKYDDNYSLTTL 122
Query: 93 TQVLFSTNI-MEEQELMAKSFQDTYNELKNTSDSSIQSKLLKSENSNDTFDMTRCSSNSS 151
Q LF+ N + + E S + T + KN+ S +S + + SSN++
Sbjct: 123 IQNLFNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNT 182
Query: 152 SATYTTLDSNLKLEFQPGMDNSNSQGNKNAKKPRLRLPNHPMLNLNIPVL---SSPDLNK 208
+ + N QP NS + A + N M + + + S D K
Sbjct: 183 KPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSEDAKK 242
Query: 209 LNFTTPEIEKFIMQNVSSNQTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKNNTSDSSS 268
K ++T T +E + +K Q N++ + + S+S
Sbjct: 243 TQ-------KDYASQSKKDKTETSNTKNPQLPTQDELKHKSKPAQSFENDVNQSNTRSTS 295
Query: 269 M 269
+
Sbjct: 296 L 296
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 30.5 bits (69), Expect = 1.4
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 292 ESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQ 347
+ I E+ ++ + ++ KL ++ LEER K L N+EL++ KL++
Sbjct: 175 AVRAEIAAEQAELTTLLSEQRAQQAKLAQL--LEERKKTLAQLNSELSADQKKLEE 228
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 30.1 bits (68), Expect = 2.4
Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 289 IDMESQERIKIERKRQRNRVAASKCRK----------RKLERIANLEERVKILKGENNEL 338
+E ++E + + + R + I LEE ++ L+ + +EL
Sbjct: 788 RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL 847
Query: 339 ASVASKLKQQVCSLKEQVMEH 359
+L++++ LKE++ E
Sbjct: 848 EEELEELEKELEELKEELEEL 868
Score = 28.9 bits (65), Expect = 5.5
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 292 ESQERIKIERKRQRNRVAASKCRKRKLE-RIANLEERVKILKGENNELASVASKLKQQVC 350
E E ++ E R R+ + +LE R+ L+E+++ LK E E ++ +L+Q +
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354
Query: 351 SLKEQVMEH 359
L+E E
Sbjct: 355 ELEEAKEEL 363
>gnl|CDD|147980 pfam06109, HlyE, Haemolysin E (HlyE). This family consists of
several enterobacterial haemolysin (HlyE)
proteins.Hemolysin E (HlyE) is a novel pore-forming
toxin of Escherichia coli, Salmonella typhi, and
Shigella flexneri. HlyE is unrelated to the well
characterized pore-forming E. coli hemolysins of the RTX
family, haemolysin A (HlyA), and the enterohaemolysin
encoded by the plasmid borne ehxA gene of E. coli 0157.
However, it is evident that expression of HlyE in the
absence of the RTX toxins is sufficient to give a
hemolytic phenotype in E. coli. HlyE is a protein of 34
kDa that is expressed during anaerobic growth of E.
coli. Anaerobic expression is controlled by the
transcription factor, FNR, such that, upon ingestion and
entry into the anaerobic mammalian intestine, HlyE is
produced and may then contribute to the colonisation of
the host.
Length = 299
Score = 29.7 bits (66), Expect = 2.6
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 69 STNIMEEQELMAKSFQDTYNELKNTQVLFSTNIMEEQELMAK-SFQDTYNELKNTSDSSI 127
ST + + + L+ S QD Y E TQ ++ + Q L A D Y+E K ++ I
Sbjct: 56 STLVGDIKSLLMDS-QDKYFEA--TQTVYEWCGVATQLLAAYILLFDEYDEKKASAQKDI 112
Query: 128 QSKLL-----KSENSNDTFDMTRCSSNSSSATYTTLDSNLKLEFQPGMDNSNSQGNKNAK 182
K+L K E + + + S N++S LDS L +F D Q +K K
Sbjct: 113 LIKVLDDGIIKLEEAQKSLHASSQSFNNASGKLIALDSQLANDFDEKSDYFQGQVDKIRK 172
Query: 183 K 183
+
Sbjct: 173 E 173
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 29.7 bits (67), Expect = 3.4
Identities = 18/92 (19%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 292 ESQERIKIERKRQRNRVAASKCRKRKLE--------RIANLEERVKILKGENNELASVAS 343
E + +K + K + +K +LE + +LE R+ LK E +EL +
Sbjct: 840 EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899
Query: 344 KLKQQVCSLKEQVMEHVHNGCQINVVMSQLSQ 375
+L++++ L+ Q+ + ++ + L +
Sbjct: 900 ELERKIEELEAQIEKKRKRLSELKAKLEALEE 931
>gnl|CDD|211384 cd11298, O-FucT-2, GDP-fucose protein O-fucosyltransferase 2.
O-FucT-2 adds O-fucose to thrombospondin type 1 repeats
(TSRs), and appears conserved in bilateria. The
O-fucosylation of TSRs appears to play a role in
regulating secretion of metalloproteases of the ADAMTS
superfamily. O-fucosyltransferase-like proteins are
GDP-fucose dependent enzymes with similarities to the
family 1 glycosyltransferases (GT1). They are soluble ER
proteins that may be proteolytically cleaved from a
membrane-associated preprotein, and are involved in the
O-fucosylation of protein substrates, the core
fucosylation of growth factor receptors, and other
processes.
Length = 374
Score = 29.2 bits (66), Expect = 3.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 68 FSTNIMEEQELMAKSFQDTYNEL 90
FS I EE+E++ T+N L
Sbjct: 349 FSFRIQEEREILGFPPDTTFNRL 371
Score = 29.2 bits (66), Expect = 3.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 97 FSTNIMEEQELMAKSFQDTYNEL 119
FS I EE+E++ T+N L
Sbjct: 349 FSFRIQEEREILGFPPDTTFNRL 371
Score = 29.2 bits (66), Expect = 3.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 237 FSTNIMEEQELMAKSFQDTYNEL 259
FS I EE+E++ T+N L
Sbjct: 349 FSFRIQEEREILGFPPDTTFNRL 371
>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding. This family
is found in mammals where it is localised at cell-cell
adherens junctions, and in Sch. pombe and other fungi
where it anchors spindle-pole bodies to spindle
microtubules. It is a coiled-coil structure, and in
pombe, it is required for anchoring the minus end of
spindle microtubules to the centrosome equivalent, the
spindle-pole body. The name ADIP derives from the family
being composed of Afadin- and alpha -Actinin-Binding
Proteins Localised at Cell-Cell Adherens Junctions.
Length = 149
Score = 28.4 bits (64), Expect = 3.7
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 293 SQERIKIERKRQRNRVAASKCRKRKLER-IANLEERVKILKGENNELASVASKLKQQ 348
+ ER+K + + +A + ++R+LE+ + LE+++K K E L ++ + K Q
Sbjct: 72 TIERLKTQLEDLERELALLQAKERQLEKKLKTLEQKLKNEKEEVQRLKNIIQQRKTQ 128
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain. This
presumed domain is found at the N-terminus of Ribosomal
L30 proteins and has been termed RL30NT or NUC018.
Length = 71
Score = 26.8 bits (60), Expect = 4.7
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 299 IERKRQRNRVAASKCRKRKLE-RIANLEERVKILK 332
+ +KR+RN +K K++ + A ++R I K
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFK 36
>gnl|CDD|191111 pfam04849, HAP1_N, HAP1 N-terminal conserved region. This family
represents an N-terminal conserved region found in
several huntingtin-associated protein 1 (HAP1)
homologues. HAP1 binds to huntingtin in a polyglutamine
repeat-length-dependent manner. However, its possible
role in the pathogenesis of Huntington's disease is
unclear. This family also includes a similar N-terminal
conserved region from hypothetical protein products of
ALS2CR3 genes found in the human juvenile amyotrophic
lateral sclerosis critical region 2q33-2q34.
Length = 307
Score = 28.6 bits (64), Expect = 4.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 307 RVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355
R S ++ L+E++K+L+ EN L S AS LK + + +E+
Sbjct: 149 RPQESSSSSHGCFQLEALQEKLKLLEEENEHLRSEASHLKTETVTYEEK 197
>gnl|CDD|219917 pfam08584, Ribonuc_P_40, Ribonuclease P 40kDa (Rpp40) subunit. The
tRNA processing enzyme ribonuclease P (RNase P) consists
of an RNA molecule and at least eight protein subunits.
Subunits hpop1, Rpp21, Rpp29, Rpp30, Rpp38, and Rpp40
(this entry) are involved in extensive, but weak,
protein-protein interactions in the holoenzyme complex.
Length = 283
Score = 28.5 bits (64), Expect = 6.1
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 17/100 (17%)
Query: 140 TFDMTRCSSNSSSATYTTL------DSNLKLEFQPGMDNSNSQGNKNAKKPRLRLPNHP- 192
D+ S + L NLK+++ NS S G+ N P P
Sbjct: 73 EIDLRLPSMLPGKKGFQRLLWALKNVLNLKVDWLFAWLNSGSGGSDNRPGPSYLSKYKPT 132
Query: 193 ----------MLNLNIPVLSSPDLNKLNFTTPEIEKFIMQ 222
+ NL PVL+ +L + E+ ++
Sbjct: 133 EHKTEVSTTELRNLLCPVLNPAELTGKPDNSEELCDHALE 172
>gnl|CDD|190534 pfam03131, bZIP_Maf, bZIP Maf transcription factor. Maf
transcription factors contain a conserved basic region
leucine zipper (bZIP) domain, which mediates their
dimerisation and DNA binding property. Thus, this family
is probably related to pfam00170.
Length = 93
Score = 26.6 bits (59), Expect = 7.2
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 296 RIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355
R+K R+ +NR A CR +++++ LE+ E ++L +LKQ+V L +
Sbjct: 28 RLKQRRRTLKNRGYAQSCRSKRVQQRHELEK-------EKSQLQQQVEQLKQEVSRLARE 80
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 27.7 bits (62), Expect = 7.6
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 73 MEEQELMAKSFQDTYNELKNTQVLFSTNIMEEQELMAKSFQDTYNELKNTS 123
M+E + M K FQ + E + + + ++E+++ + D +K
Sbjct: 74 MKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQM--EMMDDQRELMKMQF 122
>gnl|CDD|223011 PHA03218, PHA03218, nuclear protein UL24; Provisional.
Length = 306
Score = 28.0 bits (62), Expect = 8.0
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 285 PMSPIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVK 329
P + R K + +R +A C + K ++ +
Sbjct: 8 PTTAARPTCTRRSKCKPRRYGRAGSAGNCLRGKHAGNVLMKRLLA 52
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 28.5 bits (63), Expect = 8.0
Identities = 18/127 (14%), Positives = 47/127 (37%), Gaps = 10/127 (7%)
Query: 239 TNIMEEQELMAKSFQDTYNELKNNTSDSSSMLIKDEPAHSIASTSPPM----SPIDMESQ 294
+E + K QD LK + + A S+ ++ + + + +
Sbjct: 133 AKAQQELARLTKQAQDLQTRLKTLAEQRRQL---EAQAQSLQASQKQLQASATQLKSQVL 189
Query: 295 E-RIKIERKRQRNRVAASKCR--KRKLERIANLEERVKILKGENNELASVASKLKQQVCS 351
+ +++ + Q + A++ + + E +A + + + S+ QQ+ +
Sbjct: 190 DLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAA 249
Query: 352 LKEQVME 358
EQ+ E
Sbjct: 250 RAEQIRE 256
>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses
sigma54-dependent transcription [Transcription / Signal
transduction mechanisms].
Length = 225
Score = 27.7 bits (62), Expect = 9.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 318 LERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358
LE +LE+ K L+ E + KLK+Q+ +L++++ E
Sbjct: 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAE 131
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.123 0.328
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,543,404
Number of extensions: 1610381
Number of successful extensions: 1672
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1637
Number of HSP's successfully gapped: 91
Length of query: 376
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 278
Effective length of database: 6,590,910
Effective search space: 1832272980
Effective search space used: 1832272980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (26.8 bits)