RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7086
(376 letters)
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA
complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F
2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Length = 62
Score = 84.7 bits (210), Expect = 4e-21
Identities = 42/62 (67%), Positives = 51/62 (82%)
Query: 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357
K ERKR RNR+AASK RKRKLERIA LEE+VK LK +N+ELAS A+ L++QV LK++VM
Sbjct: 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60
Query: 358 EH 359
H
Sbjct: 61 NH 62
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription
regulation, nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 1fos_E* 1a02_F* 1s9k_D
Length = 63
Score = 69.4 bits (170), Expect = 2e-15
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357
K +R+RN++AA+KCR R+ E L+ L+ E + L + + L ++ L+ +
Sbjct: 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61
Query: 358 EH 359
H
Sbjct: 62 AH 63
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA
complex, transcription/DNA complex; 3.00A {Homo sapiens}
SCOP: h.1.3.1
Length = 61
Score = 69.3 bits (170), Expect = 2e-15
Identities = 18/60 (30%), Positives = 36/60 (60%)
Query: 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVM 357
K + +RNR AAS+ R+++ + +LE++ + L N +L S + L+ +V LK+ ++
Sbjct: 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding,
eukaryotic regulatory protein, transcription/DNA
complex; HET: DNA; 2.20A {Saccharomyces cerevisiae}
SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Length = 63
Score = 61.0 bits (148), Expect = 2e-12
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCS 351
KR RN AA + R RKL+R+ LE++V+ L +N L + ++LK+ V
Sbjct: 9 PAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGE 62
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP:
h.1.3.1
Length = 63
Score = 60.8 bits (148), Expect = 2e-12
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 297 IKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356
+K +K ++N+ AA++ R++K L K L+ +N L A L +++ LK+ +
Sbjct: 1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60
Query: 357 ME 358
E
Sbjct: 61 EE 62
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA
complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Length = 55
Score = 54.3 bits (131), Expect = 3e-10
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCS 351
K E + +NR AA + R++K E + +LE RV +L+ +N L LK
Sbjct: 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSH 54
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 6e-10
Identities = 65/419 (15%), Positives = 127/419 (30%), Gaps = 136/419 (32%)
Query: 35 PDLNKLNFTTPEIEKFIMQNVSSNQTPTPTQVLFSTNIMEEQELMAKSF-----QDTYNE 89
D+ K + EI+ IM + + T LF T ++ +QE M + F + Y
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSG----TLRLFWT-LLSKQEEMVQKFVEEVLRINYKF 93
Query: 90 LKNTQVLFSTNIMEEQ---ELMAKSFQDTYNELKNTSDS-------------SIQSKLL- 132
L + I EQ +M + + + + L N + ++ LL
Sbjct: 94 LM-------SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 133 ----------------KS--------------ENSNDTF--DMTRCSSNSS-----SATY 155
K+ + F ++ C+S +
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 156 TTLDSNLKLEFQPGMDNS-NSQGNKNAKKPRLR----LPNHP--MLNL-NIPVLSSPDLN 207
+D N + D+S N + ++ + LR + +L L N V ++ N
Sbjct: 207 YQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQNAKAWN 260
Query: 208 KLNF------TTPEIEKFIMQNVSSNQTPTPTQVLFSTNIMEEQ--ELMAKSFQDTYNEL 259
N TT + + +S+ T + S + ++ L+ K
Sbjct: 261 AFNLSCKILLTTRFKQ--VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL------- 311
Query: 260 KNNTSDSSSMLIKDEPAHSIASTSP-PMSPI-DMESQERIKIERKRQRNRVAASKCRKRK 317
+D P + +T+P +S I + + + N + +
Sbjct: 312 --------DCRPQDLP-REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 318 LERIANLEER------------VKI---------LKGENNELASVASKLKQQVCSLKEQ 355
L + E R I +++ V +KL + SL E+
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY--SLVEK 419
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 53.9 bits (129), Expect = 2e-09
Identities = 17/70 (24%), Positives = 39/70 (55%)
Query: 286 MSPIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKL 345
+ + E ++K R+ +NR A+ CR +++ + LE++ L+ E +LAS + +
Sbjct: 25 LRGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASM 84
Query: 346 KQQVCSLKEQ 355
K ++ +L+ +
Sbjct: 85 KLELDALRSK 94
>2wt7_B Transcription factor MAFB; transcription, transcription regulation,
nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 2wty_A* 1k1v_A
Length = 90
Score = 53.1 bits (127), Expect = 2e-09
Identities = 15/70 (21%), Positives = 34/70 (48%)
Query: 286 MSPIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKL 345
+ + R+K +R+ +NR A CR +++++ +LE L + +L S+L
Sbjct: 15 LRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRL 74
Query: 346 KQQVCSLKEQ 355
++ + K +
Sbjct: 75 ARERDAYKVK 84
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA
complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Length = 87
Score = 52.7 bits (126), Expect = 3e-09
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 287 SPIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLK 346
+D S E + +R+RN +A K R + R + +V L EN L +L
Sbjct: 7 KTVDKHSDEY---KIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS 63
Query: 347 QQVCSLKEQVMEH 359
+++ +L+ +
Sbjct: 64 RELSTLRNLFKQL 76
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA
complex, transcription factor, BZIP, C/EBP; 1.80A {Homo
sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A
1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Length = 78
Score = 50.3 bits (120), Expect = 2e-08
Identities = 14/59 (23%), Positives = 27/59 (45%)
Query: 301 RKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQVMEH 359
+R+RN +A K R + R + +V L EN L +L +++ +L+ +
Sbjct: 18 IRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 3e-07
Identities = 63/442 (14%), Positives = 125/442 (28%), Gaps = 171/442 (38%)
Query: 50 FIMQNVSSNQTPTPTQVLFSTNIMEEQELMAKSFQDTYNELKNTQV-LFSTNIMEEQELM 108
++ V ++ QVL L F++ Y L+ + + +++E +
Sbjct: 67 YVSSLVEPSKVGQFDQVL---------NLCLTEFENCY--LEGNDIHALAAKLLQENDTT 115
Query: 109 AKSFQD---TYNELKNTSDSSI----QSKLLKSE---------------NSNDTFDMTRC 146
++ Y + + S L ++ N++D F+ R
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR- 174
Query: 147 SSNSSSATYTTLDSNL------KLE------------FQPGMD------NSNSQGNKNAK 182
TY L +L L F G++ N ++
Sbjct: 175 ---DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT------ 225
Query: 183 KPRLRLPNHPMLNLNIPVLSSP------------DLNKLNFTTPEIEKFIMQNVSSNQTP 230
P+ L L+IP+ S P L FT E+ ++ + +
Sbjct: 226 ------PDKDYL-LSIPI-SCPLIGVIQLAHYVVTAKLLGFTPGELRS-YLKGATGHSQG 276
Query: 231 TPTQVL---------FSTNIMEEQELMAKSF------QDTY-----------NELKNNTS 264
T V F ++ + ++ F + Y + L+NN
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVL---FFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 265 DSSSML-IKDEP------------AH-------SIA---S------TSPPMSPIDMESQ- 294
S ML I + +H I+ + PP S +
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 295 ERIKIERKRQRNRVAASKCRKRKLERIAN-------------LEERVKILKGENNELASV 341
+ K ++R+ S +RKL + +N L ++ +L
Sbjct: 394 RKAKAPSGLDQSRIPFS---ERKL-KFSNRFLPVASPFHSHLLVPASDLIN---KDLVKN 446
Query: 342 ASKLKQQVCSLKEQVMEHVHNG 363
+ ++ V +G
Sbjct: 447 NVSFNAK--DIQIPV-YDTFDG 465
Score = 31.6 bits (71), Expect = 0.48
Identities = 42/263 (15%), Positives = 76/263 (28%), Gaps = 101/263 (38%)
Query: 20 PNHPMLNLNIPVLSSP------------DLNKLNFTTPEIEKFIMQNVSSNQTPTPTQVL 67
P+ L L+IP+ S P L FT E+ ++ + + T V
Sbjct: 226 PDKDYL-LSIPI-SCPLIGVIQLAHYVVTAKLLGFTPGELRS-YLKGATGHSQGLVTAVA 282
Query: 68 FSTNIMEEQELMAKSFQDTYNELKNT-QVLFSTNI-MEEQE------LMAKSFQDT--YN 117
+ S++ + ++ VLF I + E L +D+ N
Sbjct: 283 IA---------ETDSWESFFVSVRKAITVLFF--IGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 118 E--------LKNTSDSSIQSKL------LKSE--------NSNDTFDMTRCSSNSSSATY 155
E + N + +Q + L + N ++ +
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS-----GPPQSL 386
Query: 156 TTLDSNL-KLEFQPGMDNSN---SQGNKNAKKPRLRL-------PNH-PMLN-------- 195
L+ L K + G+D S S+ +K + P H +L
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSE-----RKLKFSNRFLPVASPFHSHLLVPASDLINK 441
Query: 196 -------------LNIPVLSSPD 205
+ IPV + D
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFD 464
Score = 30.0 bits (67), Expect = 1.6
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 40/125 (32%)
Query: 230 PTPTQVLFSTNIMEEQELMAKSFQDTYNELKNNTSDSSSMLIKDEPAHSIASTSPPMSPI 289
PT F + ++EQ F E P A+ P +P
Sbjct: 21 LVPTASFFIASQLQEQ------FNKILPE----------------PTEGFAADDEPTTPA 58
Query: 290 DMESQ------ERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVAS 343
++ + ++ + Q ++V L E L+G N++ ++A+
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQV---------LNLCLTEFEN-CYLEG--NDIHALAA 106
Query: 344 KLKQQ 348
KL Q+
Sbjct: 107 KLLQE 111
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA LDA; 2.50A
{Caenorhabditis elegans} SCOP: a.37.1.1
Length = 92
Score = 44.9 bits (106), Expect = 1e-06
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 283 SPPMSPIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERV 328
+ +S + +I R+R +N+VAA CR+R+ +R + +
Sbjct: 50 NESLSEYQRQLIRKI---RRRGKNKVAARTCRQRRTDRHDKMSHYI 92
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA
complex, transcription/DNA complex; HET: DNA; 2.00A
{Schizosaccharomyces pombe} SCOP: h.1.3.1
Length = 70
Score = 40.0 bits (93), Expect = 5e-05
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 298 KIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQ 355
+++ +NR A RKRK + + LE +V LK ++ +L+Q+V L+E+
Sbjct: 8 PSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 41.0 bits (96), Expect = 6e-04
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 294 QERIKIERKRQRN---RVAASKCRKRKLER-IANLEERVKILKGENNELASVASKLKQQV 349
QE+++ E + +K++LE + +E R++ + + +L + K++QQ+
Sbjct: 898 QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQM 957
Query: 350 CSLKEQVME 358
L+EQ+ E
Sbjct: 958 LDLEEQLEE 966
Score = 28.6 bits (64), Expect = 4.1
Identities = 7/76 (9%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 290 DMESQERIKIERKRQRNRVAASKCRKRKLERIAN---------LEERVKILKGENNELAS 340
+ E +K++ + + + E + +++++ L+ + E +
Sbjct: 910 EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 341 VASKLKQQVCSLKEQV 356
KL+ + + ++
Sbjct: 970 ARQKLQLEKVTADGKI 985
Score = 28.3 bits (63), Expect = 6.2
Identities = 11/65 (16%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 295 ERIKIERKRQRNRVAASKCRKRKLE-RIANLEERVKILKGENNELASVASKLKQQVCSLK 353
+ + + ++ + + R+LE I++L+E ++ K N+ L +++ +LK
Sbjct: 1098 QAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALK 1157
Query: 354 EQVME 358
++ +
Sbjct: 1158 TELED 1162
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 91
Score = 35.3 bits (81), Expect = 0.004
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 297 IKIERKRQRNRVAASKCRKRKLERI 321
++ R+R +N+VAA RKRKLE I
Sbjct: 65 VRDIRRRGKNKVAAQNYRKRKLETI 89
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein,
epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4}
SCOP: h.1.3.1 PDB: 2c9n_Y
Length = 63
Score = 29.0 bits (64), Expect = 0.39
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 299 IERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNEL 338
+E KR +NRVAA K R + + + + E EN+ L
Sbjct: 2 LEIKRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRL 41
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry,
GAL4, complex activator/DNA, gene regulation/DNA
complex; HET: DNA; 2.50A {Saccharomyces cerevisiae}
SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Length = 81
Score = 29.4 bits (66), Expect = 0.42
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 301 RKRQRNRVAASKCRKRKL 318
RKR R ++ + CRKRK+
Sbjct: 1 RKRNRIPLSCTICRKRKV 18
>1cld_A CD2-LAC9; zinc-binding domain, transcription regulation; NMR
{Kluyveromyces lactis} SCOP: g.38.1.1
Length = 61
Score = 28.1 bits (63), Expect = 0.69
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 299 IERKRQRNRVAASKCRKRKL 318
+++ + A CRK+K
Sbjct: 1 MKKSSEVMHQACDACRKKKW 20
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding,
chaperone, nucleotide-BI proteasome, S-nitrosylation;
1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Length = 51
Score = 27.4 bits (60), Expect = 1.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 316 RKLERIANLEERVKILKGENNELASVASKLKQQVCSLKEQV 356
R I LE R+ L N++L + +QQ+ +L+E+V
Sbjct: 6 RSARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 46
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 1.3
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 14/59 (23%)
Query: 292 ESQERIKIERKRQRNRV----AASKCRKRKLERIA---------NLEERVKILKGENNE 337
E E I+ R+ QR R+ AASK +++ A E+V+ K N
Sbjct: 83 EP-ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 29.1 bits (65), Expect = 2.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 141 FDMTRCSSNSSSATYTTLDSNLKLEFQPGMDNSNSQGN 178
FD CS S TY + NL+L + G+D + N
Sbjct: 136 FDWQNCSLVFRSQTYNAHEVNLQLSAEEGIDPEDFTEN 173
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 29.1 bits (65), Expect = 2.9
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 141 FDMTRCSSNSSSATYTTLDSNLKLEFQPGMDNSNSQGN 178
FD C+ S TY T + L+ ++ N
Sbjct: 137 FDWQNCTMVFKSYTYDTSEVILQHALDAMINQDAFTEN 174
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane
protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a
1sht_X 1t6b_Y*
Length = 182
Score = 28.5 bits (64), Expect = 2.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 318 LERIANLEERVKILKGENNELASVASKLKQQVC 350
LERIA+ +E+V +KG L + + + Q C
Sbjct: 150 LERIADSKEQVFPVKGGFQALKGIINSILAQSC 182
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure,
structural genomics, protein structure initiative; NMR
{Corynebacterium glutamicum} SCOP: a.4.1.19
Length = 97
Score = 27.4 bits (61), Expect = 3.0
Identities = 5/43 (11%), Positives = 12/43 (27%)
Query: 297 IKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELA 339
I + + E+I L++ + + A
Sbjct: 44 IIKYGSNHNVQGTTPSAAVSEAEQIRQLKKENALQRARTRHPA 86
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.9
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 21/43 (48%)
Query: 158 LDSNLKLEFQPGMDNSNSQGNKNAKKPRLRLPNHPMLNLNIPV 200
L ++LKL + D++ P L + +
Sbjct: 25 LQASLKL-YAD--DSA------------------PALAIKATM 46
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens}
Length = 185
Score = 27.4 bits (61), Expect = 5.6
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 315 KRKLERIANLEERVKILKGENNELASVASKLKQQVC 350
+ +L RIA+ ++ V + L + + ++ C
Sbjct: 150 ETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSC 185
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 26.8 bits (59), Expect = 6.0
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 314 RKRKLER-IANLEERVKILKGENNELASVASKLKQQVCSLKEQVME 358
K +LE + + +R++ + N EL + KL+ + LK + +
Sbjct: 77 NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 28.0 bits (62), Expect = 6.3
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 285 PMSPIDMESQERIK-IERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVAS 343
P+SP + Q ++K +E +++ V K K + LEE + GE N
Sbjct: 87 PLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEK 146
Query: 344 K---LKQQVCSLKEQVMEH 359
+ L + V S + + E
Sbjct: 147 QFDILNKAVTSYNKILTEE 165
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.123 0.328
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,913,256
Number of extensions: 266660
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 50
Length of query: 376
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 281
Effective length of database: 4,049,298
Effective search space: 1137852738
Effective search space used: 1137852738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.6 bits)