RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7086
         (376 letters)



>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
          Length = 74

 Score = 35.5 bits (82), Expect = 9e-04
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 301 RKRQRNRVAASKCRKRKLERIANL 324
           R+R +N+VAA  CR+R+ +R   +
Sbjct: 51  RRRGKNKVAARTCRQRRTDRHDKM 74


>d1qp9a1 g.38.1.1 (A:55-97) Hap1 (Cyp1) {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 43

 Score = 29.1 bits (65), Expect = 0.086
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 301 RKRQRNRVAASKCRKRKL 318
           RKR R  +  + CRKRK+
Sbjct: 1   RKRNRIPLGCTICRKRKV 18


>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 181

 Score = 30.7 bits (68), Expect = 0.19
 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 3/112 (2%)

Query: 242 MEEQELMAKSFQDTYNELKNNTSDSSSMLIKDEPAHSIASTSPPMSPIDMESQERIKIER 301
            + + +        +  LK               +  IA T   +  +     E+     
Sbjct: 70  EDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKIS 129

Query: 302 KRQRNRVAA---SKCRKRKLERIANLEERVKILKGENNELASVASKLKQQVC 350
           +     V         + +LERIA+ +E+V  +KG    L  + + +  Q C
Sbjct: 130 RSLGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSC 181


>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain
           {Bacteriophage lambda [TaxId: 10710]}
          Length = 87

 Score = 25.8 bits (56), Expect = 2.8
 Identities = 5/23 (21%), Positives = 13/23 (56%)

Query: 285 PMSPIDMESQERIKIERKRQRNR 307
           P++   +E   R+K   ++++N 
Sbjct: 1   PLTQEQLEDARRLKAIYEKKKNE 23


>d3alca_ g.38.1.1 (A:) Ethanol regulon transcriptional activator
           ALCR DNA-binding domain {Emericella nidulans, also known
           as Aspergillus nidulans [TaxId: 162425]}
          Length = 65

 Score = 25.6 bits (55), Expect = 2.8
 Identities = 6/19 (31%), Positives = 8/19 (42%)

Query: 300 ERKRQRNRVAASKCRKRKL 318
              R+R   +   CRK K 
Sbjct: 4   ADTRRRQNHSCDPCRKGKR 22


>d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 349

 Score = 26.0 bits (56), Expect = 8.1
 Identities = 6/34 (17%), Positives = 16/34 (47%)

Query: 96  LFSTNIMEEQELMAKSFQDTYNELKNTSDSSIQS 129
           +F + +  + ++  K    T  E K  + ++ +S
Sbjct: 296 IFKSTLDTDYQMTKKDMGFTEEEFKRLNINAAKS 329


>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein
           PF1790 {Pyrococcus furiosus [TaxId: 2261]}
          Length = 194

 Score = 25.4 bits (55), Expect = 9.8
 Identities = 8/72 (11%), Positives = 27/72 (37%)

Query: 287 SPIDMESQERIKIERKRQRNRVAASKCRKRKLERIANLEERVKILKGENNELASVASKLK 346
               +      +  ++  +++   +   +   E +  L ER++ +  E  EL      ++
Sbjct: 97  EAKGVRKSPEYEQAKELIKSQEPINVKMRELAEFLHELNERIREIIEEKRELEEARILIE 156

Query: 347 QQVCSLKEQVME 358
             + +   ++ E
Sbjct: 157 TYIENTMRRLAE 168


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.123    0.328 

Gapped
Lambda     K      H
   0.267   0.0478    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,192,046
Number of extensions: 52070
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 23
Length of query: 376
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 289
Effective length of database: 1,213,086
Effective search space: 350581854
Effective search space used: 350581854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.2 bits)