BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7087
(162 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A OS=Mus musculus GN=Phox2a PE=2
SV=1
Length = 280
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 98/165 (59%), Gaps = 34/165 (20%)
Query: 1 MDYSYLNQAAAQFDASSCALTSSMDPTGLGPCSYGDQMS---SAAYRYTAAAASMARSYN 57
MDYSYLN +D+ A+ +S +YGD + ++Y+ + ++
Sbjct: 1 MDYSYLNS----YDSCVAAMEAS---------AYGDFGACSQPGGFQYSP----LRPAFP 43
Query: 58 TAGPMGHHLSSGSAQCAVMA-RSHQDHRTPMFPASMNLQSGLPYKVYSGHEGVLTEKRKQ 116
AGP L GS+ CA+ A R HQ PA S +PYK + G L EKRKQ
Sbjct: 44 AAGPPCPAL--GSSNCALGALRDHQ-------PAPY---SAVPYKFFPEPSG-LHEKRKQ 90
Query: 117 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
RRIRTTFTSAQLKELER F ETHYPDIYTREE+A+KIDLTEARVQ
Sbjct: 91 RRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A OS=Homo sapiens GN=PHOX2A PE=1
SV=2
Length = 284
Score = 119 bits (298), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 98/162 (60%), Gaps = 28/162 (17%)
Query: 1 MDYSYLNQAAAQFDASSCALTSSMDPTGLGPCSYGDQMSSAAYRYTAAAASMARSYNTAG 60
MDYSYLN +D SC ++M+ + G +G ++Y+ + ++ AG
Sbjct: 1 MDYSYLNS----YD--SC--VAAMEASAYG--DFGACSQPGGFQYSP----LRPAFPAAG 46
Query: 61 PMGHHLSSGSAQCAVMA-RSHQDHRTPMFPASMNLQSGLPYKVYSGHEGVLTEKRKQRRI 119
P L GS+ CA+ A R HQ PA S +PYK + G L EKRKQRRI
Sbjct: 47 PPCPAL--GSSNCALGALRDHQ-------PAPY---SAVPYKFFPEPSG-LHEKRKQRRI 93
Query: 120 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
RTTFTSAQLKELER F ETHYPDIYTREE+A+KIDLTEARVQ
Sbjct: 94 RTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A OS=Rattus norvegicus GN=Phox2a
PE=2 SV=1
Length = 281
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 98/162 (60%), Gaps = 28/162 (17%)
Query: 1 MDYSYLNQAAAQFDASSCALTSSMDPTGLGPCSYGDQMSSAAYRYTAAAASMARSYNTAG 60
MDYSYLN +D SC ++M+ + G +G ++Y+ + ++ AG
Sbjct: 1 MDYSYLNS----YD--SC--VAAMEASAYG--DFGACSQPGGFQYSP----LRPAFPAAG 46
Query: 61 PMGHHLSSGSAQCAVMA-RSHQDHRTPMFPASMNLQSGLPYKVYSGHEGVLTEKRKQRRI 119
P L GS+ CA+ A R HQ PA S +PYK + G L EKRKQRRI
Sbjct: 47 PPCPAL--GSSNCALGALRDHQ-------PAPY---SAVPYKFFPEPSG-LHEKRKQRRI 93
Query: 120 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
RTTFTSAQLKELER F ETHYPDIYTREE+A+KIDLTEARVQ
Sbjct: 94 RTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 135
>sp|O35690|PHX2B_MOUSE Paired mesoderm homeobox protein 2B OS=Mus musculus GN=Phox2b PE=1
SV=1
Length = 314
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 100/164 (60%), Gaps = 27/164 (16%)
Query: 1 MDYSYLNQAAAQFDASSCALTSSMDPTGLGPCSYGDQMS---SAAYRYTAAAASMARSYN 57
M+YSYLN +A + SC + MD + L +Y D S ++ ++Y +
Sbjct: 4 MEYSYLNSSAYE----SC--MAGMDTSSLA-SAYADFSSCSQASGFQYNPIRTTFG---A 53
Query: 58 TAGPMGHHLSSGSAQCAVMARSHQDHRTPMFPASMNLQSGLPYKVYSGHEGVLTEKRKQR 117
T+G L+ GS + +DH++ + A +PYK+++ H G L EKRKQR
Sbjct: 54 TSG--CPSLTPGSCSLGTL----RDHQSSPYAA-------VPYKLFTDHGG-LNEKRKQR 99
Query: 118 RIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
RIRTTFTSAQLKELER F ETHYPDIYTREE+A+KIDLTEARVQ
Sbjct: 100 RIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 143
>sp|Q99453|PHX2B_HUMAN Paired mesoderm homeobox protein 2B OS=Homo sapiens GN=PHOX2B PE=1
SV=2
Length = 314
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 100/164 (60%), Gaps = 27/164 (16%)
Query: 1 MDYSYLNQAAAQFDASSCALTSSMDPTGLGPCSYGDQMS---SAAYRYTAAAASMARSYN 57
M+YSYLN +A + SC + MD + L +Y D S ++ ++Y +
Sbjct: 4 MEYSYLNSSAYE----SC--MAGMDTSSLA-SAYADFSSCSQASGFQYNPIRTTFG---A 53
Query: 58 TAGPMGHHLSSGSAQCAVMARSHQDHRTPMFPASMNLQSGLPYKVYSGHEGVLTEKRKQR 117
T+G L+ GS + +DH++ + A +PYK+++ H G L EKRKQR
Sbjct: 54 TSG--CPSLTPGSCSLGTL----RDHQSSPYAA-------VPYKLFTDHGG-LNEKRKQR 99
Query: 118 RIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
RIRTTFTSAQLKELER F ETHYPDIYTREE+A+KIDLTEARVQ
Sbjct: 100 RIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQ 143
>sp|Q26602|SMOX3_SCHMA Homeobox protein SMOX-3 (Fragment) OS=Schistosoma mansoni GN=SMOX-3
PE=2 SV=1
Length = 288
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/49 (89%), Positives = 48/49 (97%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
KRKQRRIRTTFTS QLKELERAFQETHYPDIYTRE++A++IDLTEARVQ
Sbjct: 1 KRKQRRIRTTFTSLQLKELERAFQETHYPDIYTREDLALRIDLTEARVQ 49
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/56 (76%), Positives = 51/56 (91%), Gaps = 2/56 (3%)
Query: 106 HEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
EG+L KRKQRR RTTFTS QL+ELERAFQ+THYPD++TREE+AM++DLTEARVQ
Sbjct: 324 EEGLL--KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 377
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/56 (76%), Positives = 51/56 (91%), Gaps = 2/56 (3%)
Query: 106 HEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
EG+L KRKQRR RTTFTS QL+ELERAFQ+THYPD++TREE+AM++DLTEARVQ
Sbjct: 320 EEGLL--KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 373
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/56 (76%), Positives = 51/56 (91%), Gaps = 2/56 (3%)
Query: 106 HEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
EG+L KRKQRR RTTFTS QL+ELERAFQ+THYPD++TREE+AM++DLTEARVQ
Sbjct: 322 EEGLL--KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 375
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/56 (76%), Positives = 51/56 (91%), Gaps = 2/56 (3%)
Query: 106 HEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
EG+L KRKQRR RTTFTS QL+ELERAFQ+THYPD++TREE+AM++DLTEARVQ
Sbjct: 207 EEGML--KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 260
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 44/49 (89%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
KRKQRR RTTFTS QL+ELE+AF THYPD++TREE+AMKI LTEAR+Q
Sbjct: 82 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 130
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
purpuratus GN=ALX PE=2 SV=2
Length = 327
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/49 (79%), Positives = 46/49 (93%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
KRKQRR RTTFTS QL+ELERAF +THYPD++TREE+AM++DLTEARVQ
Sbjct: 209 KRKQRRYRTTFTSYQLEELERAFCKTHYPDVFTREELAMRVDLTEARVQ 257
>sp|Q28DP6|PAX3_XENTR Paired box protein Pax-3 OS=Xenopus tropicalis GN=pax3 PE=2 SV=2
Length = 461
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 45/55 (81%)
Query: 107 EGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
E L KRKQRR RTTFT+ QL+ELERAF+ THYPDIYTREE+A + LTEARVQ
Sbjct: 187 EPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 241
>sp|Q645N4|PAX3A_XENLA Paired box protein Pax-3-A OS=Xenopus laevis GN=pax3-a PE=2 SV=1
Length = 484
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 45/55 (81%)
Query: 107 EGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
E L KRKQRR RTTFT+ QL+ELERAF+ THYPDIYTREE+A + LTEARVQ
Sbjct: 211 EPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 265
>sp|Q0IH87|PAX3B_XENLA Paired box protein Pax-3-B OS=Xenopus laevis GN=pax3-b PE=2 SV=2
Length = 483
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 45/55 (81%)
Query: 107 EGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
E L KRKQRR RTTFT+ QL+ELERAF+ THYPDIYTREE+A + LTEARVQ
Sbjct: 210 EPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 264
>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 OS=Homo sapiens GN=PAX3 PE=1 SV=2
Length = 479
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 45/55 (81%)
Query: 107 EGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
E L KRKQRR RTTFT+ QL+ELERAF+ THYPDIYTREE+A + LTEARVQ
Sbjct: 210 EPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 264
>sp|P24610|PAX3_MOUSE Paired box protein Pax-3 OS=Mus musculus GN=Pax3 PE=1 SV=2
Length = 479
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 45/55 (81%)
Query: 107 EGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
E L KRKQRR RTTFT+ QL+ELERAF+ THYPDIYTREE+A + LTEARVQ
Sbjct: 210 EPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 264
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
Length = 520
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 45/55 (81%)
Query: 107 EGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
E L KRKQRR RTTFT+ QL+ELE+AF+ THYPDIYTREE+A + LTEARVQ
Sbjct: 208 EPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQ 262
>sp|P47239|PAX7_MOUSE Paired box protein Pax-7 OS=Mus musculus GN=Pax7 PE=2 SV=2
Length = 503
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 44/52 (84%)
Query: 110 LTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
L KRKQRR RTTFT+ QL+ELE+AF+ THYPDIYTREE+A + LTEARVQ
Sbjct: 209 LPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQ 260
>sp|P06601|PRD_DROME Segmentation protein paired OS=Drosophila melanogaster GN=prd PE=1
SV=1
Length = 613
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 43/49 (87%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
KRKQRR RTTF+++QL ELERAF+ T YPDIYTREE+A + +LTEAR+Q
Sbjct: 210 KRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 258
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 44/51 (86%)
Query: 111 TEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
+ K K+RR RTTFTS QL+ELE+ FQ+THYPD+Y RE++AM+ DLTEARVQ
Sbjct: 195 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 245
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 44/51 (86%)
Query: 111 TEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
+ K K+RR RTTFTS QL+ELE+ FQ+THYPD+Y RE++AM+ DLTEARVQ
Sbjct: 197 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 247
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 44/51 (86%)
Query: 111 TEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
+ K K+RR RTTFTS QL+ELE+ FQ+THYPD+Y RE++AM+ DLTEARVQ
Sbjct: 209 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 259
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMK++L E RVQ
Sbjct: 525 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 573
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMK++L E RVQ
Sbjct: 119 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 167
>sp|A6NJT0|UNC4_HUMAN Homeobox protein unc-4 homolog OS=Homo sapiens GN=UNCX PE=2 SV=1
Length = 531
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 85 TPMFPASMNLQS-GLPYKVY-SGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPD 142
TP+ PA+ + G P+K+ SG + K+RR RT FT QL+ELE+AF E+HYPD
Sbjct: 72 TPLLPAACGVGGDGQPFKLSDSGDPDKESPGCKRRRTRTNFTGWQLEELEKAFNESHYPD 131
Query: 143 IYTREEIAMKIDLTEARVQ 161
++ RE +A+++DL E+RVQ
Sbjct: 132 VFMREALALRLDLVESRVQ 150
>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx OS=Homo sapiens GN=RAX PE=1 SV=2
Length = 346
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 53/80 (66%), Gaps = 5/80 (6%)
Query: 86 PMFPASMNLQSGLPYKVYSGHEGVLTE----KRKQRRIRTTFTSAQLKELERAFQETHYP 141
P P GLP +G E L+E K+K RR RTTFT+ QL ELERAF+++HYP
Sbjct: 103 PKEPGEARPSPGLPVGPATG-EAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYP 161
Query: 142 DIYTREEIAMKIDLTEARVQ 161
D+Y+REE+A K++L E RVQ
Sbjct: 162 DVYSREELAGKVNLPEVRVQ 181
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMK++L E RVQ
Sbjct: 127 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 175
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMK++L E RVQ
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 182
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
Length = 322
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMK++L E RVQ
Sbjct: 127 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 175
>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2
SV=1
Length = 263
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 42/49 (85%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
+RKQRR RTTFT QL+ LE F +THYPD++TREE+AMKI+LTEARVQ
Sbjct: 30 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQ 78
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMK++L E RVQ
Sbjct: 139 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 187
>sp|Q8BYH0|DRGX_MOUSE Dorsal root ganglia homeobox protein OS=Mus musculus GN=Drgx PE=1
SV=2
Length = 263
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 42/49 (85%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
+RKQRR RTTFT QL+ LE F +THYPD++TREE+AMKI+LTEARVQ
Sbjct: 30 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQ 78
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMK++L E RVQ
Sbjct: 132 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 180
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMK++L E RVQ
Sbjct: 33 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 81
>sp|O70137|ALX3_MOUSE Homeobox protein aristaless-like 3 OS=Mus musculus GN=Alx3 PE=2
SV=1
Length = 343
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 51/71 (71%), Gaps = 5/71 (7%)
Query: 91 SMNLQSGLPYKVYSGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIA 150
S+ L GLP + + K K+RR RTTF++ QL+ELE+ FQ+THYPD+Y RE++A
Sbjct: 133 SVPLSPGLPDSME-----LAKTKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLA 187
Query: 151 MKIDLTEARVQ 161
++ DLTEARVQ
Sbjct: 188 LRTDLTEARVQ 198
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 5/70 (7%)
Query: 92 MNLQSGLPYKVYSGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAM 151
+ L GLP + + K K+RR RTTF++ QL+ELE+ FQ+THYPD+Y RE++A+
Sbjct: 134 LPLSPGLPDSME-----LAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLAL 188
Query: 152 KIDLTEARVQ 161
+ DLTEARVQ
Sbjct: 189 RTDLTEARVQ 198
>sp|P56672|OTP_DROME Homeobox protein orthopedia OS=Drosophila melanogaster GN=otp PE=2
SV=2
Length = 409
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 41/50 (82%)
Query: 112 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
+++ Q+R RT FT AQL ELER F +THYPDI+ REEIAM+I LTE+RVQ
Sbjct: 105 QQQDQKRHRTRFTPAQLNELERCFSKTHYPDIFMREEIAMRIGLTESRVQ 154
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 4/69 (5%)
Query: 97 GLPYKVYSGHEGVLTE----KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMK 152
GLP +G + E K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+A K
Sbjct: 114 GLPVGPAAGDSKLSEEEEPPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGK 173
Query: 153 IDLTEARVQ 161
++L E RVQ
Sbjct: 174 VNLPEVRVQ 182
>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
Length = 292
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 43/49 (87%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+A+K++L E RVQ
Sbjct: 103 KKKHRRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNLPEVRVQ 151
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 OS=Oryzias latipes GN=rx2 PE=2 SV=1
Length = 327
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 92 MNLQSGLPYKVYSGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAM 151
+++ G P + G K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+A
Sbjct: 117 VDIADGSPKSIKEEEHG----KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAT 172
Query: 152 KIDLTEARVQ 161
K++L E RVQ
Sbjct: 173 KVNLPEVRVQ 182
>sp|Q62798|DRGX_RAT Dorsal root ganglia homeobox protein OS=Rattus norvegicus GN=Drgx
PE=2 SV=1
Length = 263
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 41/49 (83%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
+RKQRR RTTF QL+ LE F +THYPD++TREE+AMKI+LTEARVQ
Sbjct: 30 RRKQRRNRTTFALQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQ 78
>sp|O08934|UNC4_MOUSE Homeobox protein unc-4 homolog OS=Mus musculus GN=Uncx PE=2 SV=2
Length = 530
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 85 TPMFPASMNLQS-GLPYKVY-SGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPD 142
TP+ PA+ + P+K+ SG + K+RR RT FT QL+ELE+AF E+HYPD
Sbjct: 76 TPLLPAACGVAGESQPFKLADSGDPDKESPGCKRRRTRTNFTGWQLEELEKAFNESHYPD 135
Query: 143 IYTREEIAMKIDLTEARVQ 161
++ RE +A+++DL E+RVQ
Sbjct: 136 VFMREALALRLDLVESRVQ 154
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 42/49 (85%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+A K++L E RVQ
Sbjct: 133 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQ 181
>sp|O97039|RX_DUGJA Retinal homeobox protein Rax (Fragment) OS=Dugesia japonica GN=RAX
PE=2 SV=1
Length = 268
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 41/49 (83%)
Query: 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMKI L E RVQ
Sbjct: 84 NKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKISLPEVRVQ 132
>sp|Q6SZ65|OTP_LYTVA Homeobox protein orthopedia OS=Lytechinus variegatus GN=Otp PE=2
SV=1
Length = 360
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 39/47 (82%)
Query: 115 KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
KQ+R RT FT AQL ELER F +THYPDI+ REEIAM++ LTE+RVQ
Sbjct: 111 KQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESRVQ 157
>sp|P97830|UNC4_RAT Homeobox protein unc-4 homolog OS=Rattus norvegicus GN=Uncx PE=2
SV=1
Length = 530
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 85 TPMFPASMNLQS-GLPYKVY-SGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPD 142
TP+ PA+ + P+K+ SG + K+RR RT FT QL+ELE+AF E+HYPD
Sbjct: 76 TPLLPAACGVAGESQPFKLADSGDPDKESPGCKRRRTRTNFTGWQLEELEKAFNESHYPD 135
Query: 143 IYTREEIAMKIDLTEARVQ 161
++ RE +A+++DL E+RVQ
Sbjct: 136 VFMREALAVRLDLVESRVQ 154
>sp|O76971|OTP_PARLI Homeobox protein orthopedia OS=Paracentrotus lividus GN=OTP PE=2
SV=1
Length = 364
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 39/47 (82%)
Query: 115 KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
KQ+R RT FT AQL ELER F +THYPDI+ REEIAM++ LTE+RVQ
Sbjct: 115 KQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESRVQ 161
>sp|Q15699|ALX1_HUMAN ALX homeobox protein 1 OS=Homo sapiens GN=ALX1 PE=1 SV=2
Length = 326
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 42/47 (89%)
Query: 115 KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
K+RR RTTFTS QL+ELE+ FQ+THYPD+Y RE++A++ +LTEARVQ
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQ 177
>sp|Q91574|ALX1_XENLA ALX homeobox protein 1 OS=Xenopus laevis GN=alx1 PE=2 SV=1
Length = 335
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 42/47 (89%)
Query: 115 KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
K+RR RTTFTS QL+ELE+ FQ+THYPD+Y RE++A++ +LTEARVQ
Sbjct: 140 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQ 186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.125 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,027,937
Number of Sequences: 539616
Number of extensions: 1863588
Number of successful extensions: 6080
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 5291
Number of HSP's gapped (non-prelim): 827
length of query: 162
length of database: 191,569,459
effective HSP length: 108
effective length of query: 54
effective length of database: 133,290,931
effective search space: 7197710274
effective search space used: 7197710274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)