Query psy7087
Match_columns 162
No_of_seqs 222 out of 1271
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 17:46:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh5_A ZF-HD homeobox family p 99.4 1.7E-13 5.8E-18 91.5 5.3 51 112-162 13-67 (80)
2 1wh7_A ZF-HD homeobox family p 99.4 2.1E-13 7E-18 91.2 4.5 50 112-162 13-67 (80)
3 2dmt_A Homeobox protein BARH-l 99.4 2.8E-13 9.6E-18 90.3 5.0 51 112-162 13-63 (80)
4 2kt0_A Nanog, homeobox protein 99.4 6.6E-13 2.3E-17 89.1 5.9 51 112-162 18-68 (84)
5 2cra_A Homeobox protein HOX-B1 99.4 4.1E-13 1.4E-17 87.2 4.1 49 114-162 5-53 (70)
6 1wi3_A DNA-binding protein SAT 99.3 5.2E-13 1.8E-17 85.9 3.9 50 113-162 4-54 (71)
7 2djn_A Homeobox protein DLX-5; 99.3 5.4E-13 1.8E-17 86.7 4.0 49 114-162 5-53 (70)
8 1nk2_P Homeobox protein VND; h 99.3 6.4E-13 2.2E-17 87.9 4.4 51 112-162 5-55 (77)
9 2da3_A Alpha-fetoprotein enhan 99.3 6E-13 2E-17 88.4 4.2 51 112-162 13-63 (80)
10 2da2_A Alpha-fetoprotein enhan 99.3 6.9E-13 2.3E-17 86.1 4.1 50 113-162 4-53 (70)
11 2dmu_A Homeobox protein goosec 99.3 6.5E-13 2.2E-17 86.2 3.9 49 114-162 5-53 (70)
12 2dms_A Homeobox protein OTX2; 99.3 8.4E-13 2.9E-17 87.9 4.1 50 113-162 4-53 (80)
13 2vi6_A Homeobox protein nanog; 99.3 5.4E-13 1.8E-17 84.7 2.9 48 115-162 2-49 (62)
14 1akh_A Protein (mating-type pr 99.3 4.8E-13 1.6E-17 84.5 2.6 50 113-162 2-51 (61)
15 1puf_A HOX-1.7, homeobox prote 99.3 1.2E-12 4E-17 86.6 4.6 51 112-162 9-59 (77)
16 2hdd_A Protein (engrailed home 99.3 6E-13 2E-17 84.2 2.9 47 116-162 3-49 (61)
17 2h1k_A IPF-1, pancreatic and d 99.3 7.8E-13 2.7E-17 84.2 3.2 47 116-162 3-49 (63)
18 2da1_A Alpha-fetoprotein enhan 99.3 6.6E-13 2.2E-17 86.2 2.8 50 113-162 4-53 (70)
19 2cue_A Paired box protein PAX6 99.3 1.2E-12 4.2E-17 87.1 4.0 49 114-162 5-53 (80)
20 1bw5_A ISL-1HD, insulin gene e 99.3 1.1E-12 3.9E-17 84.1 3.5 48 115-162 2-49 (66)
21 2dmq_A LIM/homeobox protein LH 99.3 1.5E-12 5.3E-17 86.5 4.1 49 114-162 5-53 (80)
22 3a01_A Homeodomain-containing 99.3 2.2E-12 7.5E-17 88.4 5.0 51 112-162 13-63 (93)
23 1ig7_A Homeotic protein MSX-1; 99.3 1.4E-12 4.7E-17 81.6 3.6 46 117-162 1-46 (58)
24 2l7z_A Homeobox protein HOX-A1 99.3 1.8E-12 6.3E-17 84.9 4.2 49 114-162 5-53 (73)
25 2m0c_A Homeobox protein arista 99.3 2.1E-12 7.1E-17 84.7 4.1 51 112-162 5-55 (75)
26 1fjl_A Paired protein; DNA-bin 99.3 1.7E-12 5.9E-17 86.6 3.6 51 112-162 14-64 (81)
27 1zq3_P PRD-4, homeotic bicoid 99.3 1.8E-12 6.1E-17 83.8 3.5 47 116-162 2-48 (68)
28 2e1o_A Homeobox protein PRH; D 99.3 2.5E-12 8.4E-17 83.5 4.1 48 115-162 6-53 (70)
29 1jgg_A Segmentation protein EV 99.3 2.2E-12 7.6E-17 81.2 3.2 46 117-162 2-47 (60)
30 1ftt_A TTF-1 HD, thyroid trans 99.3 2.5E-12 8.5E-17 83.1 3.4 47 116-162 2-48 (68)
31 3rkq_A Homeobox protein NKX-2. 99.3 2.6E-12 8.8E-17 80.1 3.4 47 116-162 2-48 (58)
32 1b8i_A Ultrabithorax, protein 99.3 2E-12 6.8E-17 86.4 2.9 49 114-162 18-66 (81)
33 1ahd_P Antennapedia protein mu 99.3 1.7E-12 5.7E-17 84.0 2.4 47 116-162 2-48 (68)
34 2r5y_A Homeotic protein sex co 99.3 2.4E-12 8.3E-17 87.2 3.2 50 113-162 25-74 (88)
35 2da4_A Hypothetical protein DK 99.2 1.5E-12 5.1E-17 86.7 1.7 50 113-162 5-58 (80)
36 1yz8_P Pituitary homeobox 2; D 99.2 1.6E-12 5.4E-17 84.0 1.1 48 115-162 2-49 (68)
37 2k40_A Homeobox expressed in E 99.2 5.8E-12 2E-16 81.0 3.4 46 117-162 2-47 (67)
38 2ecc_A Homeobox and leucine zi 99.2 6.1E-12 2.1E-16 83.1 3.5 44 119-162 6-49 (76)
39 3nar_A ZHX1, zinc fingers and 99.2 6.8E-12 2.3E-16 86.3 3.3 50 113-162 22-71 (96)
40 1b72_A Protein (homeobox prote 99.2 6.3E-12 2.2E-16 86.6 3.0 49 114-162 32-80 (97)
41 2ly9_A Zinc fingers and homeob 99.2 1.4E-11 4.7E-16 80.7 3.6 47 116-162 6-52 (74)
42 1lfb_A Liver transcription fac 99.2 9E-12 3.1E-16 86.4 2.8 52 111-162 4-76 (99)
43 2hi3_A Homeodomain-only protei 99.2 1.5E-11 5.1E-16 80.5 3.5 46 117-162 3-49 (73)
44 2dn0_A Zinc fingers and homeob 99.2 1.6E-11 5.6E-16 80.9 3.3 46 117-162 9-54 (76)
45 3a02_A Homeobox protein arista 99.1 1.4E-11 4.8E-16 77.5 2.7 44 119-162 2-45 (60)
46 1x2n_A Homeobox protein pknox1 99.1 2.9E-11 9.9E-16 79.0 4.0 49 114-162 5-56 (73)
47 2cuf_A FLJ21616 protein; homeo 99.1 1.9E-11 6.4E-16 83.9 3.2 50 113-162 4-68 (95)
48 1uhs_A HOP, homeodomain only p 99.1 2.2E-11 7.7E-16 79.3 3.4 46 117-162 2-48 (72)
49 2da6_A Hepatocyte nuclear fact 99.1 3E-11 1E-15 83.9 3.7 50 113-162 3-73 (102)
50 3a03_A T-cell leukemia homeobo 99.1 3.3E-11 1.1E-15 74.9 2.6 42 121-162 2-43 (56)
51 2da5_A Zinc fingers and homeob 99.1 6.5E-11 2.2E-15 77.8 3.9 45 118-162 9-53 (75)
52 1du6_A PBX1, homeobox protein 99.1 4.4E-11 1.5E-15 76.1 3.0 47 116-162 3-52 (64)
53 1au7_A Protein PIT-1, GHF-1; c 99.1 4.7E-11 1.6E-15 88.1 3.2 51 112-162 83-133 (146)
54 1puf_B PRE-B-cell leukemia tra 99.1 9.1E-11 3.1E-15 76.6 3.4 46 117-162 2-50 (73)
55 3d1n_I POU domain, class 6, tr 99.0 9.3E-11 3.2E-15 86.8 3.8 50 113-162 90-139 (151)
56 1e3o_C Octamer-binding transcr 99.0 6.8E-11 2.3E-15 88.4 3.1 50 113-162 98-147 (160)
57 2xsd_C POU domain, class 3, tr 99.0 5.7E-11 1.9E-15 89.3 2.6 51 112-162 95-145 (164)
58 2d5v_A Hepatocyte nuclear fact 99.0 8.7E-11 3E-15 88.0 3.1 51 112-162 93-143 (164)
59 1mnm_C Protein (MAT alpha-2 tr 99.0 1.3E-10 4.5E-15 78.4 3.7 49 114-162 25-76 (87)
60 2dmn_A Homeobox protein TGIF2L 99.0 1.8E-10 6.1E-15 77.2 4.0 49 114-162 5-56 (83)
61 1b72_B Protein (PBX1); homeodo 99.0 1.4E-10 4.9E-15 78.1 3.2 46 117-162 2-50 (87)
62 2ecb_A Zinc fingers and homeob 99.0 2.1E-10 7.1E-15 78.0 3.6 41 122-162 17-57 (89)
63 2cqx_A LAG1 longevity assuranc 99.0 1.2E-10 4E-15 76.1 1.4 46 117-162 9-55 (72)
64 3l1p_A POU domain, class 5, tr 99.0 2.2E-10 7.6E-15 85.2 3.0 49 114-162 94-142 (155)
65 1k61_A Mating-type protein alp 99.0 3.4E-10 1.2E-14 71.0 3.2 43 120-162 2-47 (60)
66 2dmp_A Zinc fingers and homeob 98.9 7.7E-10 2.6E-14 75.0 4.6 41 122-162 19-59 (89)
67 3nau_A Zinc fingers and homeob 98.9 5E-10 1.7E-14 71.8 2.3 39 124-162 12-50 (66)
68 1le8_B Mating-type protein alp 98.9 7.2E-10 2.5E-14 74.1 3.2 45 118-162 4-51 (83)
69 2e19_A Transcription factor 8; 98.9 8.4E-10 2.9E-14 70.4 2.9 43 120-162 7-49 (64)
70 1ic8_A Hepatocyte nuclear fact 98.9 2.6E-10 9E-15 87.8 0.2 51 112-162 111-182 (194)
71 2h8r_A Hepatocyte nuclear fact 98.9 7.4E-10 2.5E-14 86.6 2.8 45 110-154 136-180 (221)
72 2l9r_A Homeobox protein NKX-3. 98.8 1.4E-09 4.6E-14 70.5 3.0 42 121-162 9-50 (69)
73 1x2m_A LAG1 longevity assuranc 98.7 3.2E-09 1.1E-13 67.7 2.0 38 125-162 9-47 (64)
74 3k2a_A Homeobox protein MEIS2; 98.5 5.7E-08 2E-12 62.3 2.7 41 122-162 4-47 (67)
75 1mh3_A Maltose binding-A1 home 98.3 7.3E-08 2.5E-12 80.0 0.5 49 114-162 363-411 (421)
76 2da7_A Zinc finger homeobox pr 98.1 8.6E-07 2.9E-11 57.2 2.2 38 125-162 14-51 (71)
77 2lk2_A Homeobox protein TGIF1; 97.8 7E-06 2.4E-10 55.4 2.5 42 121-162 10-54 (89)
78 2rgt_A Fusion of LIM/homeobox 89.0 0.0082 2.8E-07 44.2 -5.3 30 114-143 134-163 (169)
79 2elh_A CG11849-PA, LD40883P; s 60.5 7 0.00024 24.9 2.9 39 117-160 17-55 (87)
80 2glo_A Brinker CG9653-PA; prot 38.3 26 0.0009 20.2 2.8 40 120-160 3-42 (59)
81 1p4w_A RCSB; solution structur 38.2 19 0.00065 23.6 2.3 36 120-161 32-67 (99)
82 1hlv_A CENP-B, major centromer 38.1 23 0.0008 23.6 2.8 39 119-160 4-42 (131)
83 1tc3_C Protein (TC3 transposas 37.1 25 0.00084 18.5 2.4 34 122-160 5-38 (51)
84 3ulq_B Transcriptional regulat 35.0 24 0.00081 22.6 2.3 37 119-161 26-62 (90)
85 2cqr_A RSGI RUH-043, DNAJ homo 33.8 66 0.0023 20.0 4.2 39 115-153 13-51 (73)
86 2lv7_A Calcium-binding protein 29.5 92 0.0031 19.9 4.6 39 119-157 26-69 (100)
87 1iuf_A Centromere ABP1 protein 29.1 66 0.0023 22.2 4.1 41 117-160 6-53 (144)
88 3q0w_A HTH-type transcriptiona 28.9 10 0.00034 27.8 -0.4 38 120-158 41-79 (236)
89 3hug_A RNA polymerase sigma fa 28.8 25 0.00085 22.2 1.6 35 122-161 37-71 (92)
90 1ku3_A Sigma factor SIGA; heli 28.1 27 0.00091 21.0 1.6 39 122-161 10-48 (73)
91 2cqq_A RSGI RUH-037, DNAJ homo 26.2 50 0.0017 20.5 2.6 39 120-160 8-48 (72)
92 2ys9_A Homeobox and leucine zi 25.8 32 0.0011 21.5 1.6 33 129-161 19-51 (70)
93 2p7v_B Sigma-70, RNA polymeras 25.5 29 0.00099 20.5 1.4 38 123-161 6-43 (68)
94 3fmy_A HTH-type transcriptiona 24.1 71 0.0024 19.0 3.1 33 121-160 9-41 (73)
95 1je8_A Nitrate/nitrite respons 24.0 43 0.0015 20.7 2.1 36 120-161 19-54 (82)
96 2o8x_A Probable RNA polymerase 23.5 36 0.0012 19.8 1.5 35 122-161 15-49 (70)
97 1jko_C HIN recombinase, DNA-in 22.8 52 0.0018 17.5 2.1 33 123-160 6-38 (52)
98 3c57_A Two component transcrip 22.6 51 0.0017 21.0 2.3 35 121-161 26-60 (95)
99 1fi6_A EH domain protein REPS1 22.4 40 0.0014 21.0 1.7 35 123-157 3-42 (92)
100 3bni_A Putative TETR-family tr 21.5 19 0.00066 26.1 -0.1 30 128-158 49-78 (229)
No 1
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.42 E-value=1.7e-13 Score=91.54 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=47.7
Q ss_pred cccccCCCCcccChHHHHHHHHhhhh----cCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 112 EKRKQRRIRTTFTSAQLKELERAFQE----THYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 112 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
..+++||.||.||.+|+.+||..|+. ++||+..+|++||..|+|++.||||
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~Vkv 67 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKV 67 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccC
Confidence 34567889999999999999999999 9999999999999999999999987
No 2
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.40 E-value=2.1e-13 Score=91.18 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=46.5
Q ss_pred cccccCCCCcccChHHHHHHHHhhhh-----cCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 112 EKRKQRRIRTTFTSAQLKELERAFQE-----THYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 112 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~-----~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
..+++||.||.||.+|+.+|| .|.. ++||+..+|++||..|+|++.||||
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkv 67 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKI 67 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccc
Confidence 345678899999999999999 8999 9999999999999999999999987
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.8e-13 Score=90.27 Aligned_cols=51 Identities=33% Similarity=0.520 Sum_probs=48.0
Q ss_pred cccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 112 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 112 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
..++.||.||.||.+|+..||..|+.++||+..+|++||..|+|++.||||
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 63 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKT 63 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeee
Confidence 456778899999999999999999999999999999999999999999986
No 4
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.37 E-value=6.6e-13 Score=89.08 Aligned_cols=51 Identities=27% Similarity=0.414 Sum_probs=47.9
Q ss_pred cccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 112 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 112 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
..++.||.||.||..|+..||..|..++||+..+|++||..|||++.+|||
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~v 68 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKT 68 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 456678899999999999999999999999999999999999999999986
No 5
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.36 E-value=4.1e-13 Score=87.22 Aligned_cols=49 Identities=24% Similarity=0.449 Sum_probs=46.4
Q ss_pred cccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 114 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 114 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
++.||.||.||..|+..||..|+.++||+..+|++||..|+|++.+|||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITI 53 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhH
Confidence 4568899999999999999999999999999999999999999999986
No 6
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.35 E-value=5.2e-13 Score=85.94 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=47.2
Q ss_pred ccccCCCCcccChHHHHHHHHhhhh-cCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 113 KRKQRRIRTTFTSAQLKELERAFQE-THYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 113 ~~k~rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.+++||.||.|+.+||..|+..|+. ++||+..+|++||..|||++++|||
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqV 54 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIK 54 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 3567899999999999999999999 9999999999999999999999986
No 7
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=5.4e-13 Score=86.67 Aligned_cols=49 Identities=37% Similarity=0.553 Sum_probs=46.4
Q ss_pred cccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 114 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 114 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.+.||.||.||.+|+..||..|+.++||+..+|++||..|+|++.+|||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 53 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKI 53 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 4568899999999999999999999999999999999999999999986
No 8
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.34 E-value=6.4e-13 Score=87.89 Aligned_cols=51 Identities=39% Similarity=0.487 Sum_probs=47.6
Q ss_pred cccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 112 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 112 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
..+++||.||.||..|+..||..|+.++||+..+|++||..|||++.+|||
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 55 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKI 55 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 345668889999999999999999999999999999999999999999986
No 9
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.34 E-value=6e-13 Score=88.41 Aligned_cols=51 Identities=29% Similarity=0.384 Sum_probs=47.7
Q ss_pred cccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 112 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 112 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
..++.||.||.||.+|+..||..|..++||+..+|++||..|+|++.+|||
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~ 63 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQV 63 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHH
Confidence 346678899999999999999999999999999999999999999999986
No 10
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.34 E-value=6.9e-13 Score=86.07 Aligned_cols=50 Identities=26% Similarity=0.339 Sum_probs=46.8
Q ss_pred ccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 113 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.++.||.||.||.+|+..||..|+.++||+..+|++||..|+|++.+|+|
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVV 53 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHH
Confidence 34568899999999999999999999999999999999999999999986
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=6.5e-13 Score=86.22 Aligned_cols=49 Identities=51% Similarity=0.742 Sum_probs=46.2
Q ss_pred cccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 114 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 114 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.+.||.||.||.+|+..||..|+.++||+..+|++||..|+|++.+|+|
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEV 53 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeeh
Confidence 4467899999999999999999999999999999999999999999986
No 12
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=8.4e-13 Score=87.90 Aligned_cols=50 Identities=58% Similarity=0.828 Sum_probs=47.1
Q ss_pred ccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 113 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.++.||.||.||.+|+..||..|+.++||+..+|++||..|+|++.+|||
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 53 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQV 53 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhh
Confidence 35678899999999999999999999999999999999999999999986
No 13
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.32 E-value=5.4e-13 Score=84.65 Aligned_cols=48 Identities=27% Similarity=0.496 Sum_probs=41.2
Q ss_pred ccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 115 KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 115 k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
+.||.||.||..|+..||..|+.++||+..+|++||..|||++.+|+|
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 49 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKT 49 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhH
Confidence 457889999999999999999999999999999999999999999986
No 14
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.32 E-value=4.8e-13 Score=84.51 Aligned_cols=50 Identities=22% Similarity=0.287 Sum_probs=39.2
Q ss_pred ccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 113 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
+++.+|.||.||..|+..||..|..++||+..++.+||..|||++.||+|
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~ 51 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRV 51 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 45678899999999999999999999999999999999999999999986
No 15
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.32 E-value=1.2e-12 Score=86.64 Aligned_cols=51 Identities=33% Similarity=0.402 Sum_probs=47.5
Q ss_pred cccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 112 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 112 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
..++.||.||.||..|+..||..|..++||+..+|++||..|||++.+|||
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 59 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKI 59 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 345668899999999999999999999999999999999999999999986
No 16
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.32 E-value=6e-13 Score=84.16 Aligned_cols=47 Identities=34% Similarity=0.596 Sum_probs=42.2
Q ss_pred cCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 116 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 116 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.||.||.||..|+..||..|+.++||+..+|++||..|||++.+|||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 49 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKI 49 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 47889999999999999999999999999999999999999999986
No 17
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.31 E-value=7.8e-13 Score=84.20 Aligned_cols=47 Identities=38% Similarity=0.537 Sum_probs=43.9
Q ss_pred cCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 116 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 116 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.||.||.||..|+..||..|+.++||+...|.+||..|||++.+|||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 49 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKI 49 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhH
Confidence 57889999999999999999999999999999999999999999986
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.31 E-value=6.6e-13 Score=86.16 Aligned_cols=50 Identities=26% Similarity=0.312 Sum_probs=46.8
Q ss_pred ccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 113 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.++.||.||.||.+|+..||..|+.++||+..+|++||..|+|++.+|+|
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKH 53 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 34568899999999999999999999999999999999999999999986
No 19
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.31 E-value=1.2e-12 Score=87.14 Aligned_cols=49 Identities=51% Similarity=0.872 Sum_probs=46.3
Q ss_pred cccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 114 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 114 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.+.||.||.||.+|+..||..|+.++||+..+|++||..|+|++.+|||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 53 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQV 53 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhH
Confidence 4568899999999999999999999999999999999999999999986
No 20
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.30 E-value=1.1e-12 Score=84.15 Aligned_cols=48 Identities=23% Similarity=0.403 Sum_probs=45.6
Q ss_pred ccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 115 KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 115 k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
+.||.||.||.+|+..||..|+.++||+..+|++||..|||++.+|+|
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 49 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRV 49 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 457899999999999999999999999999999999999999999985
No 21
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.5e-12 Score=86.50 Aligned_cols=49 Identities=31% Similarity=0.468 Sum_probs=46.4
Q ss_pred cccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 114 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 114 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
++.||.||.||.+|+..||..|+.++||+..+|++||..|+|++.+|||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 53 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQV 53 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhH
Confidence 4568899999999999999999999999999999999999999999986
No 22
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.30 E-value=2.2e-12 Score=88.37 Aligned_cols=51 Identities=31% Similarity=0.516 Sum_probs=47.5
Q ss_pred cccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 112 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 112 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
..++.||.||.||.+|+..||..|..++||+..+|++||..|||++.+|||
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 63 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKT 63 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhccc
Confidence 345668899999999999999999999999999999999999999999986
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.30 E-value=1.4e-12 Score=81.57 Aligned_cols=46 Identities=43% Similarity=0.642 Sum_probs=44.2
Q ss_pred CCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 117 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 117 rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
||.||.||.+|+..||..|+.++||+..+|++||..|||++.+|||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 46 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKI 46 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhh
Confidence 5789999999999999999999999999999999999999999986
No 24
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.29 E-value=1.8e-12 Score=84.87 Aligned_cols=49 Identities=31% Similarity=0.465 Sum_probs=46.4
Q ss_pred cccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 114 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 114 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.+.||.||.||..|+..||..|..++||+..+|++||..|||++.+|||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 53 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 53 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHH
Confidence 4568899999999999999999999999999999999999999999986
No 25
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.28 E-value=2.1e-12 Score=84.70 Aligned_cols=51 Identities=69% Similarity=1.008 Sum_probs=47.4
Q ss_pred cccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 112 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 112 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
..++++|.||.||..|+..||..|..++||+..+|++||..|||++.+|+|
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 55 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQV 55 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 345668899999999999999999999999999999999999999999986
No 26
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.28 E-value=1.7e-12 Score=86.57 Aligned_cols=51 Identities=69% Similarity=1.002 Sum_probs=46.4
Q ss_pred cccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 112 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 112 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
..+++||.||.||..|+..||..|..++||+..+|.+||..|||++.+|+|
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 64 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQV 64 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 456778899999999999999999999999999999999999999999986
No 27
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.28 E-value=1.8e-12 Score=83.77 Aligned_cols=47 Identities=38% Similarity=0.533 Sum_probs=45.2
Q ss_pred cCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 116 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 116 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
+||.||.||..|+..||..|..++||+..+|++||..|||++.+|+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 48 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKI 48 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhH
Confidence 47899999999999999999999999999999999999999999986
No 28
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.28 E-value=2.5e-12 Score=83.51 Aligned_cols=48 Identities=25% Similarity=0.392 Sum_probs=45.3
Q ss_pred ccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 115 KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 115 k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
+.++.|+.||.+|+..||..|+.++||+..+|++||..|+|++.||||
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 53 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKT 53 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhH
Confidence 456789999999999999999999999999999999999999999986
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.26 E-value=2.2e-12 Score=81.23 Aligned_cols=46 Identities=37% Similarity=0.566 Sum_probs=43.7
Q ss_pred CCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 117 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 117 rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
||.||.||.+|+..||..|+.++||+..++++||..|||++.+|+|
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 47 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKV 47 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 6789999999999999999999999999999999999999999985
No 30
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.26 E-value=2.5e-12 Score=83.08 Aligned_cols=47 Identities=38% Similarity=0.553 Sum_probs=45.0
Q ss_pred cCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 116 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 116 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
+||.||.||..|+..||..|..++||+...|.+||..|||++.+|+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 48 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKI 48 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHH
Confidence 47889999999999999999999999999999999999999999986
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.26 E-value=2.6e-12 Score=80.08 Aligned_cols=47 Identities=34% Similarity=0.550 Sum_probs=44.8
Q ss_pred cCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 116 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 116 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
+||.||.||..|+..||..|+.++||+..++++||..|||++.||||
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 48 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKI 48 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHH
Confidence 36789999999999999999999999999999999999999999986
No 32
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.26 E-value=2e-12 Score=86.39 Aligned_cols=49 Identities=37% Similarity=0.478 Sum_probs=42.2
Q ss_pred cccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 114 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 114 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.+.||.||.||..|+..||..|..++||+..+|++||..|||++.+|||
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 66 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKI 66 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 3457889999999999999999999999999999999999999999986
No 33
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.26 E-value=1.7e-12 Score=83.97 Aligned_cols=47 Identities=36% Similarity=0.452 Sum_probs=45.0
Q ss_pred cCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 116 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 116 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
+||.||.||..|+..||..|+.++||+..+|++||..|||++.+|||
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~v 48 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKI 48 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhH
Confidence 47889999999999999999999999999999999999999999986
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.25 E-value=2.4e-12 Score=87.16 Aligned_cols=50 Identities=34% Similarity=0.449 Sum_probs=43.1
Q ss_pred ccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 113 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.++.||.||.||..|+..||..|+.++||+..+|++||..|||++.+|||
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~v 74 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKI 74 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhH
Confidence 34568899999999999999999999999999999999999999999986
No 35
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.5e-12 Score=86.67 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=47.0
Q ss_pred ccccCCCCcccChHHHHHHHHhhhhc----CCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 113 KRKQRRIRTTFTSAQLKELERAFQET----HYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 113 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.++.||.||.||.+|+..||..|+.+ +||+..+|++||..|||++.||||
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~v 58 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRT 58 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhH
Confidence 45678899999999999999999999 999999999999999999999986
No 36
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.22 E-value=1.6e-12 Score=83.96 Aligned_cols=48 Identities=60% Similarity=0.826 Sum_probs=45.7
Q ss_pred ccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 115 KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 115 k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
++||.||.||..|+..||..|+.++||+..+|.+||..|||++.+|+|
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 49 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRV 49 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 457899999999999999999999999999999999999999999986
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.21 E-value=5.8e-12 Score=81.00 Aligned_cols=46 Identities=41% Similarity=0.612 Sum_probs=44.4
Q ss_pred CCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 117 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 117 rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
||.||.||.+|+..||..|..++||+..+|++||..|||++.+|+|
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 47 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQI 47 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 6789999999999999999999999999999999999999999985
No 38
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.21 E-value=6.1e-12 Score=83.11 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=41.9
Q ss_pred CCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 119 IRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 119 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.|+.||.+|+.+||+.|..++||+..+|++||..+||++.||||
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkv 49 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQ 49 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 56779999999999999999999999999999999999999986
No 39
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.20 E-value=6.8e-12 Score=86.32 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=43.8
Q ss_pred ccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 113 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
..+.+|.||.||..|+..||..|+.++||+..+|++||..|+|++.||||
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 71 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVS 71 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeee
Confidence 44557789999999999999999999999999999999999999999986
No 40
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.19 E-value=6.3e-12 Score=86.62 Aligned_cols=49 Identities=37% Similarity=0.522 Sum_probs=43.1
Q ss_pred cccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 114 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 114 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.+.+|.||.||..|+..||..|+.++||+..+|++||..|+|++.||||
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 80 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKI 80 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHH
Confidence 4567889999999999999999999999999999999999999999986
No 41
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.17 E-value=1.4e-11 Score=80.68 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=44.9
Q ss_pred cCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 116 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 116 ~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.++.||.||.+|+..||..|+.++||+..+|++||..|||++.||||
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 52 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKK 52 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeee
Confidence 46789999999999999999999999999999999999999999986
No 42
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.17 E-value=9e-12 Score=86.36 Aligned_cols=52 Identities=27% Similarity=0.376 Sum_probs=41.7
Q ss_pred ccccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHH------------------cC---CCCCcccC
Q psy7087 111 TEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMK------------------ID---LTEARVQK 162 (162)
Q Consensus 111 ~~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~------------------l~---L~e~qVkI 162 (162)
...+++||.||.||..|+..||..|+.++||+...|++||.. || |++.+|+|
T Consensus 4 ~~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~v 76 (99)
T 1lfb_A 4 DPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYN 76 (99)
T ss_dssp ---------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHH
T ss_pred CCCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeee
Confidence 356778899999999999999999999999999999999999 88 99999985
No 43
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.16 E-value=1.5e-11 Score=80.46 Aligned_cols=46 Identities=33% Similarity=0.289 Sum_probs=43.7
Q ss_pred CCCCcccChHHHHHHHHhhhh-cCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 117 RRIRTTFTSAQLKELERAFQE-THYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 117 rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
++.||.||.+|+..||..|+. ++||+..+|++||..|||++.+|||
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~ 49 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 49 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 567999999999999999995 9999999999999999999999986
No 44
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.6e-11 Score=80.86 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=43.7
Q ss_pred CCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 117 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 117 rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.+.||.||.+|+..||..|+.++||+..+|++||..|||++.+|||
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~ 54 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRK 54 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhH
Confidence 4569999999999999999999999999999999999999999986
No 45
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.15 E-value=1.4e-11 Score=77.52 Aligned_cols=44 Identities=68% Similarity=0.993 Sum_probs=40.1
Q ss_pred CCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 119 IRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 119 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.||.||.+|+..||..|+.++||+..+|++||..|||++.+|||
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~ 45 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQV 45 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 58999999999999999999999999999999999999999985
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.14 E-value=2.9e-11 Score=78.95 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=45.7
Q ss_pred cccCCCCcccChHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 114 RKQRRIRTTFTSAQLKELERAFQE---THYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 114 ~k~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
++.+|.|+.|+..|+..||..|.. ++||+..+|++||..+||++.||+|
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~ 56 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNN 56 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 456788999999999999999987 9999999999999999999999985
No 47
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.14 E-value=1.9e-11 Score=83.91 Aligned_cols=50 Identities=34% Similarity=0.435 Sum_probs=47.0
Q ss_pred ccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcC---------------CCCCcccC
Q psy7087 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKID---------------LTEARVQK 162 (162)
Q Consensus 113 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~---------------L~e~qVkI 162 (162)
.+++||.||.||..|+..||..|+.++||+..+|++||..|+ |++.+|+|
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~ 68 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 68 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHH
Confidence 456788999999999999999999999999999999999999 99999985
No 48
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.14 E-value=2.2e-11 Score=79.34 Aligned_cols=46 Identities=35% Similarity=0.324 Sum_probs=43.6
Q ss_pred CCCCcccChHHHHHHHHhhhh-cCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 117 RRIRTTFTSAQLKELERAFQE-THYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 117 rr~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.+.||.||..|+..||..|+. ++||+..+|++||..|||++.+|||
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~ 48 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 48 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 467999999999999999996 9999999999999999999999986
No 49
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3e-11 Score=83.93 Aligned_cols=50 Identities=24% Similarity=0.269 Sum_probs=46.4
Q ss_pred ccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHc---------------------CCCCCcccC
Q psy7087 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKI---------------------DLTEARVQK 162 (162)
Q Consensus 113 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l---------------------~L~e~qVkI 162 (162)
.+++||.||.|+..|+..||+.|+.++||+..+|++||..| .|+|.+|+|
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~ 73 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYN 73 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceee
Confidence 45678899999999999999999999999999999999999 789988875
No 50
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.10 E-value=3.3e-11 Score=74.86 Aligned_cols=42 Identities=33% Similarity=0.525 Sum_probs=39.2
Q ss_pred cccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 121 TTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 121 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
|.||.+|+..||..|+.++||+..+|.+||..|||++.+|||
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 43 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKT 43 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhH
Confidence 689999999999999999999999999999999999999986
No 51
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.5e-11 Score=77.83 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=42.0
Q ss_pred CCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 118 RIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 118 r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
+.|+.||.+|+..||..|..++||+..+|++||..|+|++.+|||
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~ 53 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDS 53 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhH
Confidence 346679999999999999999999999999999999999999986
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.09 E-value=4.4e-11 Score=76.10 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=44.7
Q ss_pred cCCCCcccChHHHHHHHHhh---hhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 116 QRRIRTTFTSAQLKELERAF---QETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 116 ~rr~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.++.|+.|+..|+..||..| ..++||+..++++||..+||++.||+|
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~ 52 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 52 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 47889999999999999999 999999999999999999999999985
No 53
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.08 E-value=4.7e-11 Score=88.06 Aligned_cols=51 Identities=27% Similarity=0.366 Sum_probs=44.0
Q ss_pred cccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 112 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 112 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
..+++||.||.||..|+..||..|..++||+..+|++||..|||++.||||
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 133 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRV 133 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchh
Confidence 445678899999999999999999999999999999999999999999986
No 54
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.05 E-value=9.1e-11 Score=76.57 Aligned_cols=46 Identities=30% Similarity=0.452 Sum_probs=44.2
Q ss_pred CCCCcccChHHHHHHHHhh---hhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 117 RRIRTTFTSAQLKELERAF---QETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 117 rr~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
||.|+.||..|+..||..| ..++||+..+|.+||..+||++.||+|
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~ 50 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 50 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 6789999999999999999 999999999999999999999999985
No 55
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.05 E-value=9.3e-11 Score=86.81 Aligned_cols=50 Identities=24% Similarity=0.376 Sum_probs=47.0
Q ss_pred ccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 113 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.+++||.||.||..|+..||..|+.++||+..+|++||..|||++.||||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 139 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRV 139 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHH
Confidence 35678899999999999999999999999999999999999999999986
No 56
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.05 E-value=6.8e-11 Score=88.42 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=43.2
Q ss_pred ccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 113 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 113 ~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
..++||.||.||..|+..||..|..++||+..+|++||..|||++.||||
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 147 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRV 147 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhH
Confidence 34678899999999999999999999999999999999999999999986
No 57
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.05 E-value=5.7e-11 Score=89.27 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=39.3
Q ss_pred cccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 112 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 112 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
..+++||.||.||..|+..||..|..++||+..+|++||..|+|++.+|||
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 145 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRV 145 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhh
Confidence 345678899999999999999999999999999999999999999999986
No 58
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.03 E-value=8.7e-11 Score=87.96 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=43.1
Q ss_pred cccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 112 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 112 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
..++.||.||.||..|+..||..|+.++||+..+|++||..|||++.||||
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~ 143 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSN 143 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhh
Confidence 345678899999999999999999999999999999999999999999986
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.03 E-value=1.3e-10 Score=78.36 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=45.3
Q ss_pred cccCCCCcccChHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 114 RKQRRIRTTFTSAQLKELERAFQE---THYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 114 ~k~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.++++.|+.||.+|+..||..|.. ++||+..+|++||..+||++.||+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~ 76 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 76 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 445667999999999999999999 9999999999999999999999985
No 60
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.02 E-value=1.8e-10 Score=77.20 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=45.0
Q ss_pred cccCCCCcccChHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 114 RKQRRIRTTFTSAQLKELERAFQE---THYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 114 ~k~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.++|+.|+.|+.+|+..||..|.. ++||+..+|++||..+||++.||+|
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~ 56 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISN 56 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 455778999999999999999987 6999999999999999999999985
No 61
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.01 E-value=1.4e-10 Score=78.06 Aligned_cols=46 Identities=30% Similarity=0.452 Sum_probs=43.5
Q ss_pred CCCCcccChHHHHHHHHhh---hhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 117 RRIRTTFTSAQLKELERAF---QETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 117 rr~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
||.|+.|+..|+..||..| ..++||+..+|++||..+||++.||+|
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~ 50 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 50 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 6789999999999999999 999999999999999999999999985
No 62
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.00 E-value=2.1e-10 Score=77.97 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=39.9
Q ss_pred ccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 122 TFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 122 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.||.+||.+||+.|+.++||+..+|++||..|||+++||||
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkv 57 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDA 57 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCee
Confidence 78999999999999999999999999999999999999987
No 63
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.97 E-value=1.2e-10 Score=76.13 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=42.3
Q ss_pred CCCCcccChHHHHHHHHhh-hhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 117 RRIRTTFTSAQLKELERAF-QETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 117 rr~Rt~ft~~Ql~~Le~~F-~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.+.|+.++.+|+.+||..| +.++||+..+|++||..|||++.||||
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqv 55 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQC 55 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcch
Confidence 4456677899999999999 999999999999999999999999986
No 64
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=98.96 E-value=2.2e-10 Score=85.22 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=46.3
Q ss_pred cccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 114 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 114 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
+++||.||.||..|+..||..|+.++||+..+|.+||..|+|++.+|||
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~v 142 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRV 142 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheee
Confidence 4567889999999999999999999999999999999999999999986
No 65
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=98.96 E-value=3.4e-10 Score=71.05 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=41.4
Q ss_pred CcccChHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 120 RTTFTSAQLKELERAFQE---THYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 120 Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
|+.||.+|+..||..|.. ++||+..+|++||..+||++.||+|
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~ 47 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 47 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 789999999999999999 9999999999999999999999985
No 66
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=7.7e-10 Score=75.02 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=39.5
Q ss_pred ccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 122 TFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 122 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.||.+||..||..|..++||+..+|++||..|+|++.+|||
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~v 59 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDS 59 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccH
Confidence 38999999999999999999999999999999999999986
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=98.90 E-value=5e-10 Score=71.78 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=37.7
Q ss_pred ChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 124 TSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 124 t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
|.+|+.+||..|..++||+..+|.+||..|||+++||||
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkv 50 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKK 50 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhH
Confidence 689999999999999999999999999999999999985
No 68
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=98.90 E-value=7.2e-10 Score=74.14 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=41.4
Q ss_pred CCCcccChHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 118 RIRTTFTSAQLKELERAFQE---THYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 118 r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
+.|+.||.+|+..||..|.. ++||+..+|++||..+||++.||+|
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~ 51 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 51 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHccc
Confidence 34666999999999999999 9999999999999999999999985
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=8.4e-10 Score=70.44 Aligned_cols=43 Identities=19% Similarity=0.123 Sum_probs=40.1
Q ss_pred CcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 120 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 120 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
+..++.+|+..||..|..++||+..+|++||..|||++++|||
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqv 49 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKK 49 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCc
Confidence 4556799999999999999999999999999999999999986
No 70
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.86 E-value=2.6e-10 Score=87.78 Aligned_cols=51 Identities=27% Similarity=0.371 Sum_probs=43.7
Q ss_pred cccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcC---------------------CCCCcccC
Q psy7087 112 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKID---------------------LTEARVQK 162 (162)
Q Consensus 112 ~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~---------------------L~e~qVkI 162 (162)
..+++||.||.|+..|+..||+.|+.++||+...|++||..++ |++.+|||
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~ 182 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYN 182 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccch
Confidence 4577889999999999999999999999999999999999999 99999985
No 71
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.86 E-value=7.4e-10 Score=86.57 Aligned_cols=45 Identities=22% Similarity=0.300 Sum_probs=38.1
Q ss_pred cccccccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcC
Q psy7087 110 LTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKID 154 (162)
Q Consensus 110 ~~~~~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~ 154 (162)
...++++||.||.|+..|+..||+.|+.++||+..+|++||..++
T Consensus 136 ~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n 180 (221)
T 2h8r_A 136 EPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECN 180 (221)
T ss_dssp ------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC
Confidence 345678899999999999999999999999999999999999987
No 72
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.84 E-value=1.4e-09 Score=70.54 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=40.0
Q ss_pred cccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 121 TTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 121 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
..+|..|+.+||+.|+.++||+..+|.+||..|||+++||||
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqv 50 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 50 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheee
Confidence 467999999999999999999999999999999999999986
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.73 E-value=3.2e-09 Score=67.74 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=35.3
Q ss_pred hHHHHHHHHhh-hhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 125 SAQLKELERAF-QETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 125 ~~Ql~~Le~~F-~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
..|+.+||+.| ..++||+..+|.+||..|+|+++||||
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkv 47 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQR 47 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHH
Confidence 45899999999 679999999999999999999999986
No 74
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.48 E-value=5.7e-08 Score=62.29 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=37.9
Q ss_pred ccChHHHHHHHHhhh---hcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 122 TFTSAQLKELERAFQ---ETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 122 ~ft~~Ql~~Le~~F~---~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.|+.+|+..||..|. .++||+..+|++||..+||++.||+|
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~ 47 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNN 47 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhh
Confidence 689999999999999 99999999999999999999999985
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.33 E-value=7.3e-08 Score=80.04 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=45.2
Q ss_pred cccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 114 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 114 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
+..++.|+.|+..|+.+||+.|+.++||+..+|++||.++||+++||||
T Consensus 363 ~~~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~ 411 (421)
T 1mh3_A 363 AAQTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRV 411 (421)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred hhhhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhH
Confidence 3445678899999999999999999999999999999999999999986
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=8.6e-07 Score=57.18 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=36.3
Q ss_pred hHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 125 SAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 125 ~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.+|+..||..|..|++|+..++.+||..+||++.+|||
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrV 51 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKE 51 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 57899999999999999999999999999999999986
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=97.84 E-value=7e-06 Score=55.43 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=38.6
Q ss_pred cccChHHHHHHHHhhhh---cCCCCHHHHHHHHHHcCCCCCcccC
Q psy7087 121 TTFTSAQLKELERAFQE---THYPDIYTREEIAMKIDLTEARVQK 162 (162)
Q Consensus 121 t~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVkI 162 (162)
.-|+.+++..|+..|.. ++||+..+|++||..+||++.||+|
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~ 54 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCN 54 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 45788999999999987 9999999999999999999999975
No 78
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=88.96 E-value=0.0082 Score=44.20 Aligned_cols=30 Identities=10% Similarity=-0.039 Sum_probs=21.8
Q ss_pred cccCCCCcccChHHHHHHHHhhhhcCCCCH
Q psy7087 114 RKQRRIRTTFTSAQLKELERAFQETHYPDI 143 (162)
Q Consensus 114 ~k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~ 143 (162)
++.||.||.|+..|++.|+..|+.++||+.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 566889999999999999999999999864
No 79
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=60.46 E-value=7 Score=24.88 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=25.7
Q ss_pred CCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcc
Q psy7087 117 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARV 160 (162)
Q Consensus 117 rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qV 160 (162)
++.+..|+.++....-..+... . ...+||..+|++...|
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl 55 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTL 55 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHH
Confidence 4456678988866655555432 2 2458899999986544
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=38.28 E-value=26 Score=20.24 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=24.5
Q ss_pred CcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcc
Q psy7087 120 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARV 160 (162)
Q Consensus 120 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qV 160 (162)
|..||.+....+...+.... .......++|..+|++...|
T Consensus 3 r~~ys~efK~~~~~~~~~g~-s~~~~~~~vA~~~gIs~~tl 42 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRNDN-DCKGNQRATARKYNIHRRQI 42 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHCT-TTTTCHHHHHHHTTSCHHHH
T ss_pred CCcCCHHHHHHHHHHHHcCC-CcchHHHHHHHHHCcCHHHH
Confidence 45688888777754444332 11111458999999976554
No 81
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=38.23 E-value=19 Score=23.65 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=26.9
Q ss_pred CcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCccc
Q psy7087 120 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161 (162)
Q Consensus 120 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVk 161 (162)
...+|..|+..|+..++-. .-.+||..|++++..|+
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~ 67 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTIS 67 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHH
Confidence 4557888888887755432 34799999999988775
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=38.08 E-value=23 Score=23.65 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=27.5
Q ss_pred CCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcc
Q psy7087 119 IRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARV 160 (162)
Q Consensus 119 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qV 160 (162)
.|..||.++..++-..+..+.... ..+||..+|++...|
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl 42 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTL 42 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHH
Confidence 577899999988877765444332 337889999887544
No 83
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=37.13 E-value=25 Score=18.54 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=21.8
Q ss_pred ccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcc
Q psy7087 122 TFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARV 160 (162)
Q Consensus 122 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qV 160 (162)
.++..+...+...+... + ...+||..||++...|
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv 38 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCI 38 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHH
Confidence 35666665555555433 2 3568999999987655
No 84
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=35.01 E-value=24 Score=22.62 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=26.2
Q ss_pred CCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCccc
Q psy7087 119 IRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161 (162)
Q Consensus 119 ~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVk 161 (162)
....+|..++..|.-..+-. ...+||..|++++..|+
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~ 62 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIE 62 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHH
T ss_pred cccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHH
Confidence 45568888888887765322 46789999999988775
No 85
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=33.81 E-value=66 Score=19.98 Aligned_cols=39 Identities=26% Similarity=0.212 Sum_probs=25.7
Q ss_pred ccCCCCcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHc
Q psy7087 115 KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKI 153 (162)
Q Consensus 115 k~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l 153 (162)
+.+-.+..+|.++-..|+.....-.--....-..||..|
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v 51 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV 51 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc
Confidence 344457789999999999887653211223345688877
No 86
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=29.47 E-value=92 Score=19.85 Aligned_cols=39 Identities=10% Similarity=0.127 Sum_probs=29.4
Q ss_pred CCcccChHHHHHHHHhhhh-----cCCCCHHHHHHHHHHcCCCC
Q psy7087 119 IRTTFTSAQLKELERAFQE-----THYPDIYTREEIAMKIDLTE 157 (162)
Q Consensus 119 ~Rt~ft~~Ql~~Le~~F~~-----~~yp~~~~r~~LA~~l~L~e 157 (162)
....++.+|+.+|...|.. +-+++..+-..+...+|+..
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~ 69 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMP 69 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCC
Confidence 3456899999999999865 45788887777777776543
No 87
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=29.14 E-value=66 Score=22.18 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=28.0
Q ss_pred CCCCcccChHHHHHHHHhh-hhcCCCCHHHHHHHHH----Hc--CCCCCcc
Q psy7087 117 RRIRTTFTSAQLKELERAF-QETHYPDIYTREEIAM----KI--DLTEARV 160 (162)
Q Consensus 117 rr~Rt~ft~~Ql~~Le~~F-~~~~yp~~~~r~~LA~----~l--~L~e~qV 160 (162)
++.|+.+|.+|..+|-..+ +.+.-. ...+||. .. +++...|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~---~q~~la~wa~~~f~~~is~sti 53 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRS---GQQDLIEWFREKFGKDISQPSV 53 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCC---CHHHHHHHHHHHHSSCCSSSST
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHCCCCcHHHH
Confidence 5678899999999998888 444433 3446676 66 5555444
No 88
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=28.87 E-value=10 Score=27.79 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=22.5
Q ss_pred CcccChHH-HHHHHHhhhhcCCCCHHHHHHHHHHcCCCCC
Q psy7087 120 RTTFTSAQ-LKELERAFQETHYPDIYTREEIAMKIDLTEA 158 (162)
Q Consensus 120 Rt~ft~~Q-l~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~ 158 (162)
|..-+.++ +..-...|.+.-|-.... .+||...|++..
T Consensus 41 ~~~~~r~~Il~aA~~lf~e~G~~~~t~-~~IA~~aGvs~~ 79 (236)
T 3q0w_A 41 SGDDRELAILATAENLLEDRPLADISV-DDLAKGAGISRP 79 (236)
T ss_dssp -CHHHHHHHHHHHHHHHHHSCGGGCCH-HHHHHHHTCCHH
T ss_pred ChHHHHHHHHHHHHHHHHHcCcccCCH-HHHHHHhCCcHH
Confidence 33334433 445566688777654433 478888888764
No 89
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=28.85 E-value=25 Score=22.20 Aligned_cols=35 Identities=14% Similarity=0.409 Sum_probs=23.4
Q ss_pred ccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCccc
Q psy7087 122 TFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161 (162)
Q Consensus 122 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVk 161 (162)
.++..|...|...|... ..-.+||..||+++..|+
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~ 71 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVK 71 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHH
Confidence 35666666666544322 246789999999988775
No 90
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=28.06 E-value=27 Score=20.98 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=25.3
Q ss_pred ccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCccc
Q psy7087 122 TFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161 (162)
Q Consensus 122 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVk 161 (162)
.++..+...|...|...-- ....-.++|..+|+++..|+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~ 48 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIR 48 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHH
Confidence 4677788888777641000 01135689999999987765
No 91
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=26.17 E-value=50 Score=20.48 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=26.1
Q ss_pred CcccChHHHHHHHHhhhhcC--CCCHHHHHHHHHHcCCCCCcc
Q psy7087 120 RTTFTSAQLKELERAFQETH--YPDIYTREEIAMKIDLTEARV 160 (162)
Q Consensus 120 Rt~ft~~Ql~~Le~~F~~~~--yp~~~~r~~LA~~l~L~e~qV 160 (162)
+..+|.++...||+...+-. -|++. +.||..+|=+..+|
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW--~~IA~~lgRt~~eV 48 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRW--EKIAHELGRSVTDV 48 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHH--HHHHHHHTSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHH--HHHHHHhCCCHHHH
Confidence 45689999999999876432 13444 46888777555544
No 92
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.80 E-value=32 Score=21.55 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=25.3
Q ss_pred HHHHHhhhhcCCCCHHHHHHHHHHcCCCCCccc
Q psy7087 129 KELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161 (162)
Q Consensus 129 ~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVk 161 (162)
+.|+..|...+.+....-..|..+..|+-.|||
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvk 51 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQVL 51 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHHH
Confidence 457788888888887777888888888776665
No 93
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=25.45 E-value=29 Score=20.48 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=24.2
Q ss_pred cChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCccc
Q psy7087 123 FTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161 (162)
Q Consensus 123 ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVk 161 (162)
++..+...|...|-..-+ ....-.++|..+|+++..|+
T Consensus 6 L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~ 43 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIR 43 (68)
T ss_dssp CCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHH
Confidence 567777777766621111 11235689999999987765
No 94
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=24.08 E-value=71 Score=18.98 Aligned_cols=33 Identities=9% Similarity=0.053 Sum_probs=21.4
Q ss_pred cccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcc
Q psy7087 121 TTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARV 160 (162)
Q Consensus 121 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qV 160 (162)
..++.+.+..+...... ...+||..+|++...|
T Consensus 9 ~~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~ti 41 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAF 41 (73)
T ss_dssp CCCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHH
T ss_pred CCCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHHH
Confidence 45777777777654332 3567888888877544
No 95
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=24.03 E-value=43 Score=20.71 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=25.5
Q ss_pred CcccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCccc
Q psy7087 120 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161 (162)
Q Consensus 120 Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVk 161 (162)
-..++..|...|...++- ..-.++|..|++++..|+
T Consensus 19 ~~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~ 54 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQG------LPNKMIARRLDITESTVK 54 (82)
T ss_dssp GGGSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHH
T ss_pred HccCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHH
Confidence 345788888887764322 246689999999987765
No 96
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=23.51 E-value=36 Score=19.75 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=23.8
Q ss_pred ccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCccc
Q psy7087 122 TFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161 (162)
Q Consensus 122 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVk 161 (162)
.++..+...|...|... ..-.++|..+|+++..|+
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~ 49 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIR 49 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHH
Confidence 35677777776654332 245689999999987664
No 97
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=22.75 E-value=52 Score=17.46 Aligned_cols=33 Identities=9% Similarity=0.309 Sum_probs=20.2
Q ss_pred cChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCcc
Q psy7087 123 FTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARV 160 (162)
Q Consensus 123 ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qV 160 (162)
++.+++..+...+... . ...+||..+|++...|
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv 38 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTL 38 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHH
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHH
Confidence 4555655555544433 2 3568999999987544
No 98
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=22.59 E-value=51 Score=20.98 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=25.3
Q ss_pred cccChHHHHHHHHhhhhcCCCCHHHHHHHHHHcCCCCCccc
Q psy7087 121 TTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161 (162)
Q Consensus 121 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVk 161 (162)
..++..|...|...++-. .-.++|..|++++..|+
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~ 60 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVK 60 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHH
Confidence 457888888887754332 35689999999987765
No 99
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=22.38 E-value=40 Score=21.04 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=19.4
Q ss_pred cChHHHHHHHHhhhh-----cCCCCHHHHHHHHHHcCCCC
Q psy7087 123 FTSAQLKELERAFQE-----THYPDIYTREEIAMKIDLTE 157 (162)
Q Consensus 123 ft~~Ql~~Le~~F~~-----~~yp~~~~r~~LA~~l~L~e 157 (162)
++.+++.+++..|.. +-+++..+-..+...+++++
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~ 42 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPI 42 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCH
Confidence 456667777777654 23455554444445555554
No 100
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=21.46 E-value=19 Score=26.10 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=20.1
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHcCCCCC
Q psy7087 128 LKELERAFQETHYPDIYTREEIAMKIDLTEA 158 (162)
Q Consensus 128 l~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~ 158 (162)
+......|.+.-|-.... .+||...|++..
T Consensus 49 l~aA~~l~~~~G~~~~tv-~~IA~~AGvs~~ 78 (229)
T 3bni_A 49 LDACADLLDEVGYDALST-RAVALRADVPIG 78 (229)
T ss_dssp HHHHHHHHHHHCTTTCCH-HHHHHHHTCCHH
T ss_pred HHHHHHHHHhcChhhccH-HHHHHHHCCCch
Confidence 344556687777765544 478999988764
Done!