RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7087
         (162 letters)



>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 77

 Score = 70.6 bits (173), Expect = 1e-17
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 114 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           R  R+ R  +T  Q  ELE+ F    Y     R E+A  ++LTE +V+
Sbjct: 11  RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58


>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 68

 Score = 69.0 bits (169), Expect = 5e-17
 Identities = 25/45 (55%), Positives = 35/45 (77%)

Query: 117 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           +R RT+FT  Q++ LE+ F+ THYPD++ RE +A KIDL EAR+Q
Sbjct: 2   QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 46


>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 58

 Score = 65.7 bits (160), Expect = 8e-16
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 117 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           R+ R  ++  QL+ELER +    +     R +I+    L+E ++ 
Sbjct: 2   RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQIT 46


>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
           melanogaster [TaxId: 7227]}
          Length = 56

 Score = 65.2 bits (159), Expect = 9e-16
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 120 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           R T+T  Q  ELE+ F    Y     R EIA  + LTE +++
Sbjct: 1   RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 42


>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 65

 Score = 65.3 bits (159), Expect = 1e-15
 Identities = 33/47 (70%), Positives = 41/47 (87%)

Query: 115 KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           KQRR RTTF+++QL ELERAF+ T YPDIYTREE+A + +LTEAR+Q
Sbjct: 1   KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 47


>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 57

 Score = 64.5 bits (157), Expect = 2e-15
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 117 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           +  +  F++ Q  ELE+ F+   Y     R+ +A  + L+E +V+
Sbjct: 1   KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 45


>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 66

 Score = 62.6 bits (152), Expect = 1e-14
 Identities = 11/47 (23%), Positives = 19/47 (40%)

Query: 115 KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           K  R+RT     QL  L   +     PD   +E++     L+   ++
Sbjct: 2   KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48


>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
           [TaxId: 7227]}
          Length = 53

 Score = 61.4 bits (149), Expect = 3e-14
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 118 RIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           R RT F+S QL  L+R F E  Y     R++++ ++ L EA+++
Sbjct: 1   RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 44


>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
           (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score = 61.6 bits (149), Expect = 5e-14
 Identities = 16/46 (34%), Positives = 20/46 (43%)

Query: 117 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 162
           R  R T+    L  +E  F E  YPD   REEIA   +    +  K
Sbjct: 1   RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGK 46


>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 60

 Score = 60.7 bits (147), Expect = 6e-14
 Identities = 29/46 (63%), Positives = 35/46 (76%)

Query: 116 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           QRR RT FTS QL++LE  FQ   YPD+ TREEIA+  +LTEARV+
Sbjct: 1   QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 46


>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 50

 Score = 60.6 bits (147), Expect = 6e-14
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 120 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           R  FT  Q + L   F+E   P    +  I+ ++ L  + V 
Sbjct: 2   RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVS 43


>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 58

 Score = 59.5 bits (144), Expect = 2e-13
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 117 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           R+ RT FT+AQL  LER F++  Y  I  R E +  + LTE +V+
Sbjct: 1   RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45


>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 57

 Score = 59.1 bits (143), Expect = 2e-13
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 118 RIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           R RT FT  QL  LE+ F + +Y     R E+A +++L E+ ++
Sbjct: 1   RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 44


>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 58

 Score = 57.2 bits (138), Expect = 1e-12
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 118 RIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           + RTT + A    LER F E   P       +A +++L +  V+
Sbjct: 1   KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 44


>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 53

 Score = 56.8 bits (137), Expect = 2e-12
 Identities = 9/42 (21%), Positives = 21/42 (50%)

Query: 120 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           +++ +      LE+ F+     +   +EE+A K  +T  +V+
Sbjct: 1   KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVR 42


>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 67

 Score = 56.9 bits (137), Expect = 2e-12
 Identities = 18/45 (40%), Positives = 28/45 (62%)

Query: 117 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           RR RTTFTS+Q+ ELE+ F +  Y       +++ K+ L  A+V+
Sbjct: 2   RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 46


>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 77

 Score = 57.0 bits (137), Expect = 3e-12
 Identities = 20/48 (41%), Positives = 27/48 (56%)

Query: 114 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
            K+R+ R  FT AQ  ELER F++  Y     RE +A  I LT  +V+
Sbjct: 7   NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVK 54


>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 68

 Score = 56.5 bits (136), Expect = 3e-12
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 116 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           +R+ R  F+ AQ+ ELER F++  Y     RE +A  I LT  +V+
Sbjct: 2   RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVK 47


>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 88

 Score = 56.9 bits (137), Expect = 3e-12
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 114 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
                +RT FT+ QL ELE+ F    Y     R EIA  ++L E +V+
Sbjct: 25  GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVK 72


>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 67

 Score = 55.8 bits (134), Expect = 6e-12
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 111 TEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           T  + ++R RT+  +     LE  F +   P +     IA ++ L +  V+
Sbjct: 3   TLVQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVR 53


>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 72

 Score = 53.1 bits (127), Expect = 7e-11
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 117 RRIRTTFTSAQLKELERAFQET-HYPDIYTREEIAMKIDLTEARVQK 162
                T T  Q++ LE  F +   +PD  T   IA +  LTE + QK
Sbjct: 2   SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 48


>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
           (Rattus rattus) [TaxId: 10117]}
          Length = 78

 Score = 53.2 bits (127), Expect = 9e-11
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 120 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           R  +  A  + L +A++    P    RE +  + +  E   +
Sbjct: 1   RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQR 42


>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 62

 Score = 52.0 bits (125), Expect = 2e-10
 Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 117 RRIRTTFTSAQLKELERAFQETH---YPDIYTREEIAMKIDLTEARVQ 161
           +  R          +     +     YP    +++IA + +LT  +V 
Sbjct: 3   KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVN 50


>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 73

 Score = 51.1 bits (122), Expect = 3e-10
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 117 RRIRTTFTSAQLKELERAFQE---THYPDIYTREEIAMKIDLTEARVQ 161
           RR R  F     + L   F       YP    +EE+A K  +T ++V 
Sbjct: 2   RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49


>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 59

 Score = 50.1 bits (120), Expect = 8e-10
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 118 RIRTTFTSAQLKELERAFQ-ETHYPDIYTREEIAMKIDLTEARVQ 161
           +            LE+ F   T YPD    + ++ ++D +  ++Q
Sbjct: 3   KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 47


>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 52

 Score = 49.7 bits (119), Expect = 8e-10
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 124 TSAQLKELERAFQE-THYPDIYTREEIAMKIDLTEARVQ 161
           T+     LE+ F   T +PD    E ++ ++D     +Q
Sbjct: 1   TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 39


>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 60

 Score = 49.4 bits (118), Expect = 1e-09
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 8/51 (15%)

Query: 114 RKQRRIRTTFTSAQLKELERAFQE---THYPDIYTREEIAMKIDLTEARVQ 161
           R  R     FT   ++ LE  F +     Y D    E +     L+  +++
Sbjct: 1   RGHR-----FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 46


>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 57

 Score = 48.8 bits (116), Expect = 2e-09
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 120 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
           RT+  +     LE++F E   P       IA ++++ +  ++
Sbjct: 2   RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 43


>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 71

 Score = 48.2 bits (114), Expect = 6e-09
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 111 TEKRKQRRIRTTFTSAQLKELERAFQET-HYPDIYTREEIAMKIDLTEARVQ 161
           +      R RT  +   L  L+    +   YPD      ++ ++DL +  + 
Sbjct: 2   SSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53


>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 80

 Score = 45.4 bits (107), Expect = 6e-08
 Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 4/54 (7%)

Query: 112 EKRKQRRIRTTFTSAQLKELERAFQE----THYPDIYTREEIAMKIDLTEARVQ 161
                +R RT FT+ Q +++    +         D    E+   +  +    ++
Sbjct: 13  SGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLK 66


>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
           ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 76

 Score = 38.9 bits (90), Expect = 2e-05
 Identities = 7/42 (16%), Positives = 15/42 (35%)

Query: 120 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
               T+ QL+ L+ +F  +          +  +  LT   + 
Sbjct: 8   FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREID 49


>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 76

 Score = 34.7 bits (79), Expect = 5e-04
 Identities = 6/42 (14%), Positives = 13/42 (30%)

Query: 120 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 161
               T  QL  L+  F +  +      +++     L    + 
Sbjct: 7   GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEII 48


>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 71

 Score = 24.8 bits (54), Expect = 2.0
 Identities = 7/35 (20%), Positives = 19/35 (54%)

Query: 126 AQLKELERAFQETHYPDIYTREEIAMKIDLTEARV 160
           ++L E E+   +  + +    +E+A  ++ + +RV
Sbjct: 20  SKLPEREKLVIQLIFYEELPAKEVAKILETSVSRV 54


>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta
           subunit, PheT, central domain {Thermus thermophilus
           [TaxId: 274]}
          Length = 207

 Score = 25.2 bits (54), Expect = 4.3
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 10/56 (17%)

Query: 106 HEGVLTEKRKQRRIRTTFTSAQLKELERAFQET-HYPDIYTREEIAMKIDLTEARV 160
           + GV    RK++R+R   +          FQE   Y   +   E A +  L   R+
Sbjct: 11  NRGVEAPYRKEQRLREVLSG-------LGFQEVYTYS--FMDPEDARRFRLDPPRL 57


>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli
           [TaxId: 562]}
          Length = 68

 Score = 23.5 bits (51), Expect = 5.5
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 109 VLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARV 160
           ++  +  ++ +  T     L E  R        D  + EEIA  +D     V
Sbjct: 2   LMLSEELRQIVFRTI--ESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTV 51


>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 165

 Score = 24.7 bits (52), Expect = 5.7
 Identities = 4/17 (23%), Positives = 11/17 (64%)

Query: 121 TTFTSAQLKELERAFQE 137
           + F + ++K L + F++
Sbjct: 8   SHFDADEIKRLGKRFKK 24


>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting
           protein {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 178

 Score = 24.4 bits (52), Expect = 6.5
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 121 TTFTSAQLKELERAFQETHYPDIYTREE 148
           T FT  +L+ L R F+      +   E 
Sbjct: 8   TNFTKRELQVLYRGFKNECPSGVVNEET 35


>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
           N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
           hamster (Cricetulus griseus) [TaxId: 10029]}
          Length = 246

 Score = 24.1 bits (51), Expect = 8.8
 Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 9/133 (6%)

Query: 26  PTGLGP---CSYGDQMSSAAYRYTAAAASMARSYNTAGPMGHHLSSGSAQCAVMARSHQD 82
           P   G     +   + S+  +    +   M     TA           A  + ++    D
Sbjct: 48  PPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVD 107

Query: 83  HRTPMFPASMNLQSGLPYKVYSGHEGVLTEKRKQRRIRTTFTSAQLKELERAF------Q 136
               +              + +    +     + R++    T+++   L+          
Sbjct: 108 DIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFST 167

Query: 137 ETHYPDIYTREEI 149
             H P+I T E++
Sbjct: 168 TIHVPNIATGEQL 180


>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel
          (Mytilus edulis) [TaxId: 6550]}
          Length = 180

 Score = 23.9 bits (51), Expect = 9.7
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 28 GLGPCSYGDQMSSAAYRYTAAAASMARSYNTAGPMGHHLSSGS 70
          G GP S   Q    A  + AAA+ M   +++          G 
Sbjct: 31 GCGPASGDAQFGWNAGSFVAAASQMY--FDSGNKGWCGQHCGQ 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.125    0.358 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 558,048
Number of extensions: 21935
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 41
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.8 bits)