Query psy7088
Match_columns 873
No_of_seqs 253 out of 1271
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 17:48:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3534|consensus 100.0 5E-253 1E-257 2077.5 41.4 676 136-862 575-1253(1253)
2 PLN03099 PIR Protein PIR; Prov 100.0 3E-214 7E-219 1866.5 50.4 634 143-840 543-1207(1232)
3 PF05994 FragX_IP: Cytoplasmic 100.0 1E-194 2E-199 1704.9 39.9 612 141-828 192-820 (820)
4 KOG0538|consensus 100.0 1.8E-46 4E-51 395.9 12.7 253 1-260 50-330 (363)
5 PLN02493 probable peroxisomal 100.0 1.2E-40 2.6E-45 367.4 15.4 167 1-168 52-235 (367)
6 PLN02979 glycolate oxidase 100.0 2E-40 4.4E-45 363.7 15.2 167 1-168 51-234 (366)
7 PRK11197 lldD L-lactate dehydr 100.0 8.4E-40 1.8E-44 362.5 14.5 167 1-168 52-256 (381)
8 PLN02535 glycolate oxidase 100.0 1.1E-39 2.5E-44 359.9 14.7 167 1-168 54-234 (364)
9 cd04736 MDH_FMN Mandelate dehy 100.0 3.3E-39 7.1E-44 355.7 14.9 166 1-168 46-247 (361)
10 cd03332 LMO_FMN L-Lactate 2-mo 100.0 5.6E-39 1.2E-43 356.4 14.7 168 1-168 67-264 (383)
11 TIGR02708 L_lactate_ox L-lacta 100.0 3.9E-38 8.5E-43 347.8 14.7 167 1-167 62-238 (367)
12 cd04737 LOX_like_FMN L-Lactate 100.0 1.7E-36 3.7E-41 333.9 14.2 167 1-168 54-232 (351)
13 PF01070 FMN_dh: FMN-dependent 100.0 1.6E-35 3.4E-40 327.3 10.0 249 1-260 40-332 (356)
14 cd02922 FCB2_FMN Flavocytochro 100.0 9.5E-35 2.1E-39 319.7 15.5 168 1-168 46-224 (344)
15 COG1304 idi Isopentenyl diphos 99.9 5.1E-27 1.1E-31 259.4 9.3 245 1-260 46-325 (360)
16 cd02809 alpha_hydroxyacid_oxid 99.8 1.5E-19 3.2E-24 195.9 14.2 137 1-167 46-182 (299)
17 cd02811 IDI-2_FMN Isopentenyl- 98.5 1.7E-07 3.6E-12 103.8 8.6 133 3-165 36-186 (326)
18 PRK05437 isopentenyl pyrophosp 98.5 1.6E-07 3.5E-12 105.0 7.4 134 3-165 44-194 (352)
19 TIGR02151 IPP_isom_2 isopenten 98.4 5.7E-07 1.2E-11 99.9 7.4 138 2-165 36-187 (333)
20 TIGR01306 GMP_reduct_2 guanosi 97.1 0.00084 1.8E-08 74.7 7.1 118 3-164 18-143 (321)
21 KOG3534|consensus 96.5 0.00038 8.1E-09 82.0 -2.2 125 336-485 735-865 (1253)
22 PRK05458 guanosine 5'-monophos 96.4 0.0082 1.8E-07 67.2 7.8 119 2-164 20-146 (326)
23 PF05994 FragX_IP: Cytoplasmic 95.5 0.0033 7.2E-08 77.4 -0.1 139 415-569 450-638 (820)
24 PF09735 Nckap1: Membrane-asso 94.3 1.6 3.5E-05 56.3 18.6 223 331-620 689-921 (1116)
25 PRK08649 inosine 5-monophospha 94.1 0.14 3E-06 58.5 7.9 90 3-98 31-131 (368)
26 PLN03099 PIR Protein PIR; Prov 94.0 0.028 6E-07 70.7 2.2 55 773-828 1086-1146(1232)
27 TIGR01304 IMP_DH_rel_2 IMP deh 92.2 0.4 8.7E-06 54.8 7.8 150 2-164 27-195 (369)
28 PRK07259 dihydroorotate dehydr 91.8 0.79 1.7E-05 50.3 9.4 131 8-165 1-165 (301)
29 cd02940 DHPD_FMN Dihydropyrimi 91.6 1.5 3.2E-05 48.4 11.3 78 71-165 99-176 (299)
30 cd04740 DHOD_1B_like Dihydroor 91.4 1.3 2.9E-05 48.4 10.5 72 71-163 89-160 (296)
31 cd04739 DHOD_like Dihydroorota 91.2 1.2 2.6E-05 49.9 10.1 72 72-165 100-171 (325)
32 TIGR01037 pyrD_sub1_fam dihydr 89.7 1.3 2.9E-05 48.5 8.7 130 9-165 1-165 (300)
33 cd00381 IMPDH IMPDH: The catal 89.6 0.66 1.4E-05 52.0 6.3 94 3-106 17-114 (325)
34 PLN02495 oxidoreductase, actin 88.6 2.4 5.1E-05 49.0 10.0 138 5-165 7-190 (385)
35 TIGR00737 nifR3_yhdG putative 88.1 1.3 2.8E-05 49.3 7.3 127 15-164 3-138 (319)
36 TIGR01305 GMP_reduct_1 guanosi 87.9 1.1 2.4E-05 50.6 6.6 125 5-168 26-161 (343)
37 PRK08318 dihydropyrimidine deh 85.0 5.3 0.00011 46.2 10.4 77 71-165 99-176 (420)
38 PRK02866 cyanate hydratase; Va 83.7 0.76 1.6E-05 46.3 2.5 70 699-796 62-131 (147)
39 PRK06843 inosine 5-monophospha 83.4 4.2 9.2E-05 47.2 8.6 55 5-67 27-82 (404)
40 PRK07565 dihydroorotate dehydr 83.1 6.2 0.00013 44.3 9.6 72 72-165 102-173 (334)
41 cd02810 DHOD_DHPD_FMN Dihydroo 81.8 7.8 0.00017 42.2 9.6 71 71-163 98-168 (289)
42 TIGR00673 cynS cyanate hydrata 80.7 1.1 2.5E-05 45.3 2.4 59 710-796 76-134 (150)
43 cd02808 GltS_FMN Glutamate syn 80.2 3.9 8.5E-05 47.1 6.9 49 18-68 76-124 (392)
44 PRK05286 dihydroorotate dehydr 76.2 18 0.00039 41.0 10.5 43 5-54 45-87 (344)
45 cd04738 DHOD_2_like Dihydrooro 70.0 24 0.00052 39.6 9.6 44 4-54 34-77 (327)
46 PRK02506 dihydroorotate dehydr 65.5 47 0.001 37.2 10.6 20 8-27 1-20 (310)
47 COG1513 CynS Cyanate lyase [In 62.3 4.3 9.2E-05 40.3 1.5 49 729-797 87-135 (151)
48 cd00559 Cyanase_C Cyanase C-te 59.3 3.1 6.8E-05 36.9 0.1 45 731-795 8-52 (69)
49 cd04722 TIM_phosphate_binding 58.0 18 0.0004 35.4 5.2 99 36-165 12-122 (200)
50 PRK01033 imidazole glycerol ph 56.9 34 0.00074 37.1 7.5 133 39-175 64-214 (258)
51 PF02560 Cyanate_lyase: Cyanat 56.6 4 8.6E-05 36.6 0.2 46 731-796 12-57 (73)
52 TIGR01036 pyrD_sub2 dihydrooro 52.2 90 0.002 35.4 10.1 39 9-54 46-84 (335)
53 TIGR00007 phosphoribosylformim 50.8 85 0.0018 33.0 9.1 131 40-174 63-206 (230)
54 cd04728 ThiG Thiazole synthase 50.4 25 0.00054 38.5 5.1 118 49-174 62-192 (248)
55 COG0042 tRNA-dihydrouridine sy 50.3 41 0.00089 38.0 7.0 129 35-172 78-213 (323)
56 PRK11815 tRNA-dihydrouridine s 48.6 60 0.0013 36.7 8.0 127 15-164 6-140 (333)
57 TIGR01361 DAHP_synth_Bsub phos 48.6 69 0.0015 35.1 8.2 79 39-163 122-200 (260)
58 PRK10415 tRNA-dihydrouridine s 47.8 55 0.0012 36.8 7.5 90 15-111 5-103 (321)
59 cd04730 NPD_like 2-Nitropropan 46.4 46 0.001 34.8 6.3 81 19-106 2-88 (236)
60 PRK06806 fructose-bisphosphate 45.3 81 0.0017 35.1 8.2 144 17-164 40-207 (281)
61 COG5126 FRQ1 Ca2+-binding prot 43.9 1.3E+02 0.0028 31.0 8.8 106 496-631 20-138 (160)
62 cd02810 DHOD_DHPD_FMN Dihydroo 43.2 1.1E+02 0.0023 33.4 8.7 126 39-172 114-258 (289)
63 PRK07998 gatY putative fructos 42.9 41 0.00089 37.5 5.4 26 142-167 184-209 (283)
64 PRK10550 tRNA-dihydrouridine s 41.7 84 0.0018 35.4 7.7 30 143-172 180-209 (312)
65 KOG1917|consensus 41.5 1.6E+02 0.0035 37.8 10.4 97 512-620 827-923 (1125)
66 cd04732 HisA HisA. Phosphorib 41.2 1.4E+02 0.0031 31.2 9.0 131 40-174 64-207 (234)
67 cd04741 DHOD_1A_like Dihydroor 40.5 1E+02 0.0022 34.2 8.1 17 11-27 1-17 (294)
68 PRK00208 thiG thiazole synthas 40.0 47 0.001 36.5 5.2 119 48-174 61-192 (250)
69 PRK13396 3-deoxy-7-phosphohept 39.7 32 0.00069 39.6 4.0 131 26-165 143-279 (352)
70 PF01207 Dus: Dihydrouridine s 39.6 60 0.0013 36.3 6.2 32 141-172 167-198 (309)
71 PRK14114 1-(5-phosphoribosyl)- 38.9 50 0.0011 35.8 5.3 121 50-176 74-207 (241)
72 PRK11081 tRNA guanosine-2'-O-m 38.8 87 0.0019 33.9 7.0 74 31-107 26-99 (229)
73 cd02801 DUS_like_FMN Dihydrour 37.6 91 0.002 32.5 6.8 32 143-174 169-200 (231)
74 PF08146 BP28CT: BP28CT (NUC21 37.4 23 0.00049 35.8 2.2 24 266-289 35-58 (153)
75 cd08585 GDPD_like_3 Glyceropho 36.4 56 0.0012 35.0 5.1 73 39-111 119-222 (237)
76 COG2185 Sbm Methylmalonyl-CoA 35.6 1.5E+02 0.0033 30.2 7.6 83 22-107 15-100 (143)
77 TIGR03151 enACPred_II putative 35.1 66 0.0014 36.0 5.6 191 11-236 5-216 (307)
78 TIGR03151 enACPred_II putative 35.0 1.1E+02 0.0023 34.4 7.2 131 38-185 76-213 (307)
79 PRK14024 phosphoribosyl isomer 33.8 71 0.0015 34.3 5.4 130 40-175 66-208 (241)
80 cd00951 KDGDH 5-dehydro-4-deox 33.2 1.5E+02 0.0032 32.7 7.9 85 20-106 5-102 (289)
81 PRK13585 1-(5-phosphoribosyl)- 32.3 1.4E+02 0.003 31.6 7.2 129 40-174 67-210 (241)
82 PRK11858 aksA trans-homoaconit 32.2 1.5E+02 0.0033 34.1 8.1 67 35-101 51-132 (378)
83 TIGR03455 HisG_C-term ATP phos 32.2 1.4E+02 0.0029 28.4 6.3 57 49-105 28-94 (100)
84 PF04028 DUF374: Domain of unk 31.9 1.2E+02 0.0026 27.4 5.6 57 33-114 18-74 (74)
85 PRK10550 tRNA-dihydrouridine s 31.3 1.8E+02 0.0039 32.8 8.3 122 20-164 1-140 (312)
86 TIGR03679 arCOG00187 arCOG0018 31.0 93 0.002 33.1 5.7 25 88-112 125-149 (218)
87 KOG2335|consensus 30.5 2.1E+02 0.0045 33.2 8.5 33 141-173 186-219 (358)
88 TIGR00736 nifR3_rel_arch TIM-b 29.3 1.2E+02 0.0026 33.0 6.1 29 144-172 177-206 (231)
89 cd03319 L-Ala-DL-Glu_epimerase 29.2 71 0.0015 35.3 4.6 93 71-172 148-243 (316)
90 TIGR03569 NeuB_NnaB N-acetylne 28.4 1.7E+02 0.0036 33.5 7.4 74 39-164 123-201 (329)
91 PRK12595 bifunctional 3-deoxy- 28.4 1.8E+02 0.004 33.5 7.8 80 39-164 215-294 (360)
92 PF08029 HisG_C: HisG, C-termi 28.3 46 0.00099 30.1 2.4 54 52-105 7-70 (75)
93 COG4014 Uncharacterized protei 28.3 12 0.00026 34.9 -1.3 16 171-186 42-57 (97)
94 PRK03170 dihydrodipicolinate s 28.0 2.1E+02 0.0046 31.4 7.9 86 20-106 6-104 (292)
95 TIGR00290 MJ0570_dom MJ0570-re 26.7 1.6E+02 0.0034 31.9 6.5 69 39-112 75-148 (223)
96 TIGR01859 fruc_bis_ald_ fructo 26.2 2.9E+02 0.0062 30.8 8.6 145 17-164 38-207 (282)
97 PRK00748 1-(5-phosphoribosyl)- 26.1 1.4E+02 0.003 31.4 5.9 127 43-175 68-208 (233)
98 PRK10415 tRNA-dihydrouridine s 26.1 1.1E+02 0.0024 34.5 5.4 32 142-173 179-210 (321)
99 PRK13397 3-deoxy-7-phosphohept 26.0 99 0.0021 34.0 4.9 70 24-100 55-124 (250)
100 cd08612 GDPD_GDE4 Glycerophosp 25.5 1E+02 0.0022 34.1 5.0 25 86-110 249-273 (300)
101 TIGR00289 conserved hypothetic 25.1 2.1E+02 0.0046 30.8 7.1 67 40-112 76-147 (222)
102 PRK08673 3-deoxy-7-phosphohept 24.8 1.1E+02 0.0023 35.2 5.0 128 28-163 137-268 (335)
103 cd08573 GDPD_GDE1 Glycerophosp 24.8 1.5E+02 0.0033 32.1 6.0 26 86-111 216-241 (258)
104 cd03315 MLE_like Muconate lact 24.7 1.1E+02 0.0023 33.0 4.9 95 71-172 99-195 (265)
105 COG0167 PyrD Dihydroorotate de 24.4 4.9E+02 0.011 29.7 10.0 41 8-52 1-41 (310)
106 PRK03620 5-dehydro-4-deoxygluc 24.3 2.5E+02 0.0055 31.2 7.8 147 20-179 12-175 (303)
107 PRK05286 dihydroorotate dehydr 24.2 3E+02 0.0066 31.3 8.5 91 72-172 212-304 (344)
108 COG2070 Dioxygenases related t 24.1 1.9E+02 0.0041 33.0 6.9 74 25-104 78-153 (336)
109 TIGR00735 hisF imidazoleglycer 23.1 1.5E+02 0.0033 31.9 5.7 62 86-175 156-217 (254)
110 TIGR00742 yjbN tRNA dihydrouri 22.9 2.1E+02 0.0046 32.3 6.9 120 21-163 2-129 (318)
111 PRK13398 3-deoxy-7-phosphohept 22.7 1.3E+02 0.0029 33.1 5.2 128 26-163 69-202 (266)
112 smart00481 POLIIIAc DNA polyme 22.4 93 0.002 26.4 3.1 22 86-107 16-37 (67)
113 TIGR02090 LEU1_arch isopropylm 22.2 2.5E+02 0.0055 32.2 7.5 75 34-108 46-135 (363)
114 PF10862 FcoT: FcoT-like thioe 22.2 59 0.0013 33.4 2.1 14 270-283 54-67 (157)
115 TIGR00737 nifR3_yhdG putative 22.0 1.2E+02 0.0027 33.7 4.8 30 143-172 178-207 (319)
116 cd03316 MR_like Mandelate race 21.4 1.9E+02 0.0042 32.4 6.2 30 144-173 227-256 (357)
117 cd04795 SIS SIS domain. SIS (S 21.3 3.8E+02 0.0081 23.0 6.8 33 73-105 49-81 (87)
118 PRK08227 autoinducer 2 aldolas 21.2 2.4E+02 0.0052 31.3 6.7 83 16-104 137-225 (264)
119 cd00950 DHDPS Dihydrodipicolin 20.7 2.6E+02 0.0057 30.4 6.9 84 21-105 6-102 (284)
120 PRK12595 bifunctional 3-deoxy- 20.7 1.3E+02 0.0027 34.8 4.6 64 29-99 163-226 (360)
121 cd04740 DHOD_1B_like Dihydroor 20.6 2.5E+02 0.0053 30.8 6.7 88 72-172 155-246 (296)
122 PRK09622 porA pyruvate flavodo 20.2 2E+02 0.0044 33.6 6.2 133 35-177 13-157 (407)
123 PF00478 IMPDH: IMP dehydrogen 20.1 2.5E+02 0.0055 32.4 6.8 51 7-65 24-75 (352)
124 TIGR03249 KdgD 5-dehydro-4-deo 20.1 3.8E+02 0.0082 29.6 8.1 85 20-106 10-107 (296)
No 1
>KOG3534|consensus
Probab=100.00 E-value=5.2e-253 Score=2077.46 Aligned_cols=676 Identities=72% Similarity=1.221 Sum_probs=659.4
Q ss_pred hhhccCCCCCHHHHHHH-HH--hcCCccchhhhhhhhhhhhhhhHHHHhhhhccccchhhhhccccccccccccccccee
Q psy7088 136 VANQFDDSVDWDDVRSL-VQ--ATKLPIVCKDSLQQCCDLSQLWYREFYLEMTMGRRIQKCVVRHQHNEECSDLITMEKR 212 (873)
Q Consensus 136 v~~~~d~sltWeDL~wL-R~--~t~lPl~lkgtl~~~~dls~LwfrEfyLe~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (873)
.+...|+ .+..+|+-+ |+ .|.-.++++.+|++|||||||||||||||||||| |
T Consensus 575 LRk~ldg-~~il~I~~Fhr~Sf~~~~L~n~SdtlqqccdLSQLWfREFyLEmTMGr-----------------------R 630 (1253)
T KOG3534|consen 575 LRKSLDG-PTILKIEVFHRKSFFWTHLLNFSDTLQQCCDLSQLWFREFYLEMTMGR-----------------------R 630 (1253)
T ss_pred hhhhcCC-chhhhHHHHHHhhhHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhhcc-----------------------c
Confidence 3333343 355666544 33 4888899999999999999999999999999999 9
Q ss_pred eecccCCchhHHHHHHhhhcCCCCcchhhccccccccchHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy7088 213 IQFPIEMSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYK 292 (873)
Q Consensus 213 iqFPIe~SlPwIL~~hiL~~~~~~l~e~ilypLdlYnDaA~~AL~~lk~q~LydEIeAEvnlcfdqlv~kls~~if~~yK 292 (873)
||||||||||||||||||++++|||||+++||||||||||+|||+.|+||||||||||||||||||||||||||||+|||
T Consensus 631 IQFPIEMSMPWILTDhIL~tkEpSmmE~vLY~LDLYNDsA~YaLt~F~KQFLYDEvEAEVNLCFDQFVYKLseqiFa~YK 710 (1253)
T KOG3534|consen 631 IQFPIEMSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTNFNKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYK 710 (1253)
T ss_pred eecchhccCchhhhhhHHhcCChhHHHHhhcchhcccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcChhhHHHHhhcccccccCCCCchHHHHHhhccceecccceehhHHHHHHHHHHHHHHHHHHHHhhhcCCcee
Q psy7088 293 QLAASMLLDKRFRVECMAMGTYLLAYPRANRYETLLRQRHVQLLGRSIDLNKLITQRINADMHKSLDLAISKFEHGDITG 372 (873)
Q Consensus 293 ~~Aas~lld~~~~~~~~~~~~~~~~~p~~~R~~~ll~Q~~v~lLGr~idl~~li~qr~n~~~~~~l~~~i~rfe~~~l~~ 372 (873)
++|+||+||||||+||...|+.+ ++|+++||||||+||||||||||||||+||+||+|+.|.|+||.||+||||.||+|
T Consensus 711 ~lAgs~lLDKRfraEc~~~G~~i-~~P~~nRyEtLLkQRHVQLLGRSiDLNrlitQRvnaam~Ksld~AI~rFEsedlts 789 (1253)
T KOG3534|consen 711 QLAGSMLLDKRFRAECKNSGTMI-RYPPSNRYETLLKQRHVQLLGRSIDLNRLITQRVNAAMYKSLDLAISRFESEDLTS 789 (1253)
T ss_pred HHhhhhhhhHHHHHHHHhcCeee-eCCCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhhccCCchh
Confidence 99999999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhhhHHHHHHHHHHHhhhcccCCcHHHHHHHhcccCCCccchhHHHHHHHhhcCcCcccccCCCcchHHHHHHHhhhc
Q psy7088 373 VVELEGLLAVNRLCHKLLSKLLGLDDYDAMLHEANHNVLAPYGRITLHIFWELNYDFLPNYCYNGATNRITLHIFWELNY 452 (873)
Q Consensus 373 ivel~~ll~i~r~tH~lL~~~l~Ld~F~~~l~e~n~~~~s~~~~i~~~~~~e~~~d~~~~y~~~~~~~rit~~vf~el~~ 452 (873)
|||||.|++++|+||++||.++.|||||+|++||||+ |++|| ||||+||||||||
T Consensus 790 IVELd~Lle~NRl~H~LLs~~l~ld~FD~mf~EANHn-------------------V~aPy------GRITLHVFwELNy 844 (1253)
T KOG3534|consen 790 IVELDGLLEINRLCHKLLSKYLTLDPFDAMFREANHN-------------------VSAPY------GRITLHVFWELNY 844 (1253)
T ss_pred hhhhHhHHHHHHHHHHHHHHHhccCchHHHHHHhccc-------------------cCCCC------ceeEEEEeeeecc
Confidence 9999999999999999999999999999999998888 45677 8999999999999
Q ss_pred CCccccccccCCccccccccccccccccccCCCCCcccccccchhHHHHHHHHHhhcccccChHHHHHHHHHhCCCCHHH
Q psy7088 453 DFLPNYCYNGATNRFIKCRGIMFTQQIHREKLPPMTHTYSWGSKQLNMAYYSIYGQYTGFVGAYHFRAMCRLLGYQGIAV 532 (873)
Q Consensus 453 d~~pnycyn~~t~rFvr~~~~~~~~~~~r~~~p~~~~~~~~g~~~l~~a~~~~~~~~~~f~g~~H~~a~~rLlg~~~i~~ 532 (873)
||+||||||++||||||++ ++|++++||+|||++++.|+||||+||+||++|++.|++|||.|||++|||||||||||+
T Consensus 845 DFlpNycYNgsTnRFvRt~-~~fsq~~qReKppq~~~~Yl~GSK~Ln~Ays~iy~~Y~~fvG~pHf~aicRLLgYQGIAV 923 (1253)
T KOG3534|consen 845 DFLPNYCYNGSTNRFVRTR-HPFSQEPQREKPPQVQPYYLWGSKSLNAAYSNIYGSYRNFVGPPHFKAICRLLGYQGIAV 923 (1253)
T ss_pred ccchhhhccCccchhhhhc-ccccccccccCCCCCCceEEecchHHHHHHHHHHHHHhcCCCcHHHHHHHHHhcccchHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcccccCCCCCCCCChhHHHHHHHhccccccCchhhHHHHHHHHhhhhHHHHHH
Q psy7088 533 VMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYYHAQLNDIVQYPDAKTELFHNFRELGNTILFCL 612 (873)
Q Consensus 533 ~i~ell~~~~~~i~~~~~~yv~~l~~~mPk~~kLP~~dyGs~G~l~yy~~~L~~~~~Y~dLk~evfq~fREiGN~i~f~~ 612 (873)
||+||||+++++++++|.+||+++++.|||+|||||++|||+|+++||++||++|++||||||++||+|||+||+|+||+
T Consensus 924 vmdelLKivk~Llqg~ilq~vktl~~~MPKiCkLPR~eYGSpgiL~yy~h~L~div~Y~elKte~fQ~lRE~GN~I~FCl 1003 (1253)
T KOG3534|consen 924 VMDELLKIVKSLLQGTILQYVKTLMEVMPKICKLPRHEYGSPGILEYYHHHLKDIVEYPELKTEFFQSLREVGNAILFCL 1003 (1253)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCCccccCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchHHHHhHhhhccCCCCCCCcccCCCCcchhhhhHHHhhhcccceeccccccCchHHHHHhhhcchhhhhhhcc
Q psy7088 613 LMEQALSQEEVCDLLHAAPFQNILPRPYCKEGEKPETKQKRLEQKYASLQIVSNIDRLGTAKQAMIAREGDLLTRERLCC 692 (873)
Q Consensus 613 lLd~aL~q~e~~~~~~aaPf~~iiP~~~~~~g~~~~~~~~~le~k~~~~~v~~~~~~~g~~~q~~~a~e~dll~~erl~~ 692 (873)
++||||+|||+||++|||||+||+|+|++|+||+++.|+|+||+||+++|+||.++++||++|+++|+|||+||||||||
T Consensus 1004 liEqaLsqEEvcDLlhAA~fqni~Pr~~~ke~e~~~~k~krLE~kya~lhlv~~iekigt~~Q~aIAregdLlTkERLCC 1083 (1253)
T KOG3534|consen 1004 LIEQALSQEEVCDLLHAAPFQNILPRPPAKEGERLEAKMKRLEAKYAPLHLVPLIEKIGTPQQAAIAREGDLLTKERLCC 1083 (1253)
T ss_pred HHHHHhhHHHHHHHHHhhhhccCCCCCccccchhHHHHHHHHHhhcCceeehhHHHHcCChHHhHHhhhhhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhhcCCCCccCCCCCCCeeeeccccchHHHHHHhHhhhcccCCCCcchhHHhhcCcccchhHHHHHHh
Q psy7088 693 GLSIFEVVLNRLRGFLDDPIWVGPPPTNGVINIDECTEFHRLWSALQFVYCIPVGDTEFTVEELFGEGLNWAGCTMIVLL 772 (873)
Q Consensus 693 glsife~~L~ri~~~L~~~~W~g~~p~ngv~~id~~~eF~RlWSaLQF~~C~p~~~~~~~~~e~fGDGl~WaGctII~LL 772 (873)
|||+||.+|.||+++|+|++|.||||+||||+||||+||||+|||+|||||+|++.|++++||+||||++||||+||.||
T Consensus 1084 GLs~FEviL~Riks~L~DpiW~Gp~PtNGv~hvDECvEfhRlwSAlQFvyCiPv~~~E~t~Ee~FGdgL~WaGc~iIvLL 1163 (1253)
T KOG3534|consen 1084 GLSMFEVILTRIKSYLDDPIWRGPPPTNGVMHVDECVEFHRLWSALQFVYCIPVRTNEFTAEELFGDGLNWAGCTIIVLL 1163 (1253)
T ss_pred cHHHHHHHHHHHHHHhcCccccCCCCCCCeeeHHHHHHHHHHHHHhheEEEEecCCCeeeHHHHhCCccccccceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccceecchhhcccCCCcccccccHHHHHHHHHHHHHhhhHHHHHHhhhhCCCCCCccccccccccCCCCCc
Q psy7088 773 GQQRRFEALDFCYHILRVQRVDGRDENVKGIHLKRMVDRIRRFQVVNSQIFATLNKYLGSSDADAASVEHVRCFPPPIHP 852 (873)
Q Consensus 773 gQq~rFe~lDF~yhil~V~~~d~~~~~~~g~~l~~~~~~~~~~~~lN~~iFs~L~~~~~~~~~~~~~~~~v~~~~pp~~~ 852 (873)
|||||||+||||||++||+++||||+.++|++|++|||||||||+||||||+||++|+++++++++|+||||||+||+||
T Consensus 1164 GQqRRFevlDFCYHllrVqk~DGKDEiik~i~LkkMveRIRrfQiLNnqif~IL~kylk~ge~~~~~vEhVRcF~PPiH~ 1243 (1253)
T KOG3534|consen 1164 GQQRRFEVLDFCYHLLRVQKADGKDEIIKGIPLKKMVERIRRFQILNNQIFIILNKYLKSGEGEGSPVEHVRCFQPPIHP 1243 (1253)
T ss_pred cchhhhHHHHHHHHHHHHhhccCchhhhcCCcHHHHHHHHHHHHHHhhHHHHHHHHHhccCCCCCCchhheeccCCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCCC
Q psy7088 853 SLAQQHGHYY 862 (873)
Q Consensus 853 ~~~~~~~~~~ 862 (873)
|++++++|++
T Consensus 1244 s~as~~a~~q 1253 (1253)
T KOG3534|consen 1244 SLASSAARRQ 1253 (1253)
T ss_pred hhhhhhhccC
Confidence 9999999985
No 2
>PLN03099 PIR Protein PIR; Provisional
Probab=100.00 E-value=3.2e-214 Score=1866.52 Aligned_cols=634 Identities=35% Similarity=0.612 Sum_probs=602.0
Q ss_pred CCCHHHHHHHHH------hcCCccchhhhhhhhhhhhhhhHHHHhhhhccccchhhhhcccccccccccccccceeeecc
Q psy7088 143 SVDWDDVRSLVQ------ATKLPIVCKDSLQQCCDLSQLWYREFYLEMTMGRRIQKCVVRHQHNEECSDLITMEKRIQFP 216 (873)
Q Consensus 143 sltWeDL~wLR~------~t~lPl~lkgtl~~~~dls~LwfrEfyLe~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iqFP 216 (873)
.++=+|++.|.. .|.--|+++.||++|||||+|||||||||+++ +||||
T Consensus 543 ~i~~~~i~~ie~Fl~~S~~f~~LL~~s~tL~~~~Dls~LWFREfyLE~~~-------------------------~iQFP 597 (1232)
T PLN03099 543 EIPVNDLKQLETFFNKLAFFPHILDYRATIGHLTDLGFLWFREFYLETSR-------------------------VIQFP 597 (1232)
T ss_pred CCChHHHHHHHHHHHHhhhHHHHhchHHHHHHhhhhHHHHHHHHHHhhcc-------------------------eeecc
Confidence 455566666543 36778999999999999999999999999995 99999
Q ss_pred cCCchhHHHHHHhhhcCCCCcchhhccccccccchHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy7088 217 IEMSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAA 296 (873)
Q Consensus 217 Ie~SlPwIL~~hiL~~~~~~l~e~ilypLdlYnDaA~~AL~~lk~q~LydEIeAEvnlcfdqlv~kls~~if~~yK~~Aa 296 (873)
|||||||||+||||++++|+|+|+||||||||||||++||++|||||||||||||||||||||||||||+||+|||++|+
T Consensus 598 Ie~SLPwIL~dhiL~~~~~~L~E~IfyPLdiYNDAA~~AL~~lk~qfLYDEIEAEv~LCfDqlv~klsd~iF~~yK~~A~ 677 (1232)
T PLN03099 598 IECSLPWMLVDYILESQDAGLLESVLLPFDIYNDSAQHALRVLKQRFLYDEIEAEVDLCFDQLVSKLSESIFTYYKSRAA 677 (1232)
T ss_pred hhcCccHHHHHHHHcCCChhhhhhhhcchhhhhhHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcChhhHHHHhhcccccccCCCCchHHHHHhhccceecccceehhHHHHHHHHHHHHHHHHHHHHhhhcCCceeehhh
Q psy7088 297 SMLLDKRFRVECMAMGTYLLAYPRANRYETLLRQRHVQLLGRSIDLNKLITQRINADMHKSLDLAISKFEHGDITGVVEL 376 (873)
Q Consensus 297 s~lld~~~~~~~~~~~~~~~~~p~~~R~~~ll~Q~~v~lLGr~idl~~li~qr~n~~~~~~l~~~i~rfe~~~l~~ivel 376 (873)
|++|||+|+++|+. |.++ .. +|+||++|||||||+||||+||||+||+||||++|+++||.+|+||||+|||+||||
T Consensus 678 s~~Ld~~f~~~~~~-~~~~-~~-~p~Ry~~LlqQr~v~lLGr~IDL~~LItQRlN~~~~~~Le~~i~rfEs~dL~~ivel 754 (1232)
T PLN03099 678 SKLLDPSFLAAVDN-GEKF-SV-QPKRYDALFKMRRVKILGRTIDLASLIAQRMNKIFRENLDFLFERFESQDLCSVVEL 754 (1232)
T ss_pred HHhhCHHHHhhhhc-cccC-CC-ChHHHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHH
Confidence 99999999999996 8776 44 579999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhcccCCcHHHHHHHhcccCCCccchhHHHHHHHhhcCcCcccccCCCcchHHHHHHHhhhcCCcc
Q psy7088 377 EGLLAVNRLCHKLLSKLLGLDDYDAMLHEANHNVLAPYGRITLHIFWELNYDFLPNYCYNGATNRITLHIFWELNYDFLP 456 (873)
Q Consensus 377 ~~ll~i~r~tH~lL~~~l~Ld~F~~~l~e~n~~~~s~~~~i~~~~~~e~~~d~~~~y~~~~~~~rit~~vf~el~~d~~p 456 (873)
|++++|+|+||++||++|+|||||+||+||||+.+ +++|| ||||+||||||+|||+|
T Consensus 755 e~ll~ilr~TH~LLse~L~LdpFd~m~~Ean~~~s-----------------~~S~~------sri~~hv~~el~~Df~P 811 (1232)
T PLN03099 755 QRLVEILRLTHELLSEHLSIDPFSLMLGEMQENIS-----------------LVSFS------SRLASQIWSEMQNDFLP 811 (1232)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHhccCC-----------------ccchh------hHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999998621 24555 78888888888888899
Q ss_pred ccccccCCccccccccccccccccccCCCCCcccccccchhHHHHHHHHHhhcccccChHHHHHHHHHhCCCCHHHHHHH
Q psy7088 457 NYCYNGATNRFIKCRGIMFTQQIHREKLPPMTHTYSWGSKQLNMAYYSIYGQYTGFVGAYHFRAMCRLLGYQGIAVVMEE 536 (873)
Q Consensus 457 nycyn~~t~rFvr~~~~~~~~~~~r~~~p~~~~~~~~g~~~l~~a~~~~~~~~~~f~g~~H~~a~~rLlg~~~i~~~i~e 536 (873)
|||||++||||||++ .+|+++++|+++|+++++|+||+|.||+||++++++|++|||.|||+||||||||+||||||+|
T Consensus 812 Ny~~n~~T~RFVrs~-~~~~~~~~Re~~P~~~~~~~~Gtk~Ln~A~~~~~~ly~~f~G~pH~~ai~rLlG~~~la~vi~~ 890 (1232)
T PLN03099 812 NFILCNTTQRFVRSS-KVPQRPTRRPSVPSAKPSFLCGTQDLNMAHQSFAELHSKFFGLPHMFAIVKLLGSRSLPWLIRA 890 (1232)
T ss_pred cceecCccchhcccc-cCcccccccCCCCCCCcceeecchHHHHHHHHHHHHHhcccCcHHHHHHHHHhcccchHHHHHH
Confidence 999999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcccccCCCCCCCCChhHHHHHHHhccccccCchhhHHHHHHHHhhhhHHHHHHHHHH
Q psy7088 537 LLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYYHAQLNDIVQYPDAKTELFHNFRELGNTILFCLLMEQ 616 (873)
Q Consensus 537 ll~~~~~~i~~~~~~yv~~l~~~mPk~~kLP~~dyGs~G~l~yy~~~L~~~~~Y~dLk~evfq~fREiGN~i~f~~lLd~ 616 (873)
|||+++++|+ +|+|||++|+++|||+||||++||||+||++||++||+|+++| |||+||||+||||||+|+||++||+
T Consensus 891 lL~~i~~~i~-~l~~~v~~L~~~mPk~~~Lp~~dyG~~g~~~~~~~qL~~~~~y-elk~ev~q~fREiGn~i~f~~Lld~ 968 (1232)
T PLN03099 891 LLDHLSQKIT-TLEPMIEDLREAMPKAIGLPSFDGGVAGCMKIFREQLQWGTKY-EGKSEVLRGLKEIGSLIFWMSLLDI 968 (1232)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhCccccCCCccccCchHHHHHHHHHHhHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhchHHHHhHhhhccCCCCCCCcccCCCCcchhhhhHHHhhhccc---------ceeccccccCchHHHHH---hhhcch
Q psy7088 617 ALSQEEVCDLLHAAPFQNILPRPYCKEGEKPETKQKRLEQKYASL---------QIVSNIDRLGTAKQAMI---AREGDL 684 (873)
Q Consensus 617 aL~q~e~~~~~~aaPf~~iiP~~~~~~g~~~~~~~~~le~k~~~~---------~v~~~~~~~g~~~q~~~---a~e~dl 684 (873)
||+|+|++||+|||||+|++|++ +||. ++++++|+++ +||++++|++++.|..+ |++||+
T Consensus 969 aL~qee~~~~~~aAPflgi~P~~---~gq~-----~~~~~~ys~~~~~~~~~~~~~v~~~~~~~~~~~~~~~kq~~~adl 1040 (1232)
T PLN03099 969 AMREVETVQFMQVAPWLGLVPGK---EGQL-----QQADDNESPLVSLFKEATSAVVSSPGCLNPSAFVSMSKQAEVADL 1040 (1232)
T ss_pred HhhHHHHHHHHHhcccccCCCCC---chhh-----hhhhcccchHHHHHHHHhhhhhcCcccCCchhhcchhhhhhhhhH
Confidence 99999999999999999999987 7653 5578888874 67889999999999888 449999
Q ss_pred hhhhhhccCchHHHHHHHHHHhhcCC--CCccCCCCCCCeeeeccccchHHHHHHhHhhhcccCCCCcchhHHhhcCccc
Q psy7088 685 LTRERLCCGLSIFEVVLNRLRGFLDD--PIWVGPPPTNGVINIDECTEFHRLWSALQFVYCIPVGDTEFTVEELFGEGLN 762 (873)
Q Consensus 685 l~~erl~~glsife~~L~ri~~~L~~--~~W~g~~p~ngv~~id~~~eF~RlWSaLQF~~C~p~~~~~~~~~e~fGDGl~ 762 (873)
||||||||| |+||++|+|+|++|++ ++|++ ||.||||+||||+||||||||||||||+|+++|+.++||+||||++
T Consensus 1041 L~kerl~~G-Svfe~~L~~~~~~L~~~~~~W~~-~P~nGvi~Id~~~eFhRlwSalQfv~c~p~~~~e~~~ee~fGDgl~ 1118 (1232)
T PLN03099 1041 LYKSNLNTG-SVLEYTLAFTSAVLDRHRSKWSA-PPKTGFIDITTSKDFYRIYSGLQYVYLEEISAEGSAFHERLGDSVA 1118 (1232)
T ss_pred HHHhhcccc-cHHHHHHHHHHHHHhcccCcccC-CCCCCeEecccchHHHHHHHhhhheeeccCCCCcccHHHHhccccc
Confidence 999999999 9999999999999999 99995 5669999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhcccccccccccceecchhhcccCCCc-----------ccccccHHHHHHHHHHHHHhhhHHHHHHhhhhC
Q psy7088 763 WAGCTMIVLLGQQRRFEALDFCYHILRVQRVDGRDE-----------NVKGIHLKRMVDRIRRFQVVNSQIFATLNKYLG 831 (873)
Q Consensus 763 WaGctII~LLgQq~rFe~lDF~yhil~V~~~d~~~~-----------~~~g~~l~~~~~~~~~~~~lN~~iFs~L~~~~~ 831 (873)
|||||||+|||||+|||+||||||||||+++|++|+ .+.|++|++|+|||||||+|||||||+|++|||
T Consensus 1119 WaGctii~lLgQq~rFe~lDF~yhiL~V~e~d~~~~~~~~~~~~~k~~~~~~~l~~~~e~~rr~r~LNnqVFs~L~~~~~ 1198 (1232)
T PLN03099 1119 WGGCTIVYLLGQQLRFELLDFIYHVLSVSEVESASASHTHRNERLKSPSYHQGWEGFLENARKARRLNNHVFSLLRARCP 1198 (1232)
T ss_pred cccchHHhhhcchhhhhHHHHHHHHHHHHHHhcccchhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999997 688899999999999999999999999999999
Q ss_pred CCCCCcccc
Q psy7088 832 SSDADAASV 840 (873)
Q Consensus 832 ~~~~~~~~~ 840 (873)
+.|+.++++
T Consensus 1199 ~~d~~~~~~ 1207 (1232)
T PLN03099 1199 LEDKLASMI 1207 (1232)
T ss_pred ccccccccc
Confidence 999887653
No 3
>PF05994 FragX_IP: Cytoplasmic Fragile-X interacting family; InterPro: IPR008081 Cytoplasmic fragile X mental retardation protein (FMRP) interacting protein belongs to a highly conserved but, as yet, functionally uncharacterised family. Absence of FMRP is responsible for pathologic manifestations in Fragile X Syndrome, the most frequent cause of inherited mental retardation []. FMRP is an RNA-binding protein that may have a role in local protein translation at neuronal dendrites and in dendritic spine maturation []. CYFIP1 and CYFIP2, which share a high level of sequence identity, have recently been identified as cytoplasmic FMRP interacting proteins []. CYFIP2 interacts with FMRP-related proteins FXR1P/2P, while CYFIP1 interacts exclusively with FMRP. The FMRP-CYFIP interaction involves the domain of FMRP that also mediates homo- and heteromerisation, suggesting competition between the various interaction partners. CYFIP1 also interacts with the small GTPase Rac1 implicated in development and maintenance of neuronal structures. CYFIP1/2 are both present in synaptosomal extracts []. PIR121 (121F-specific p53 inducible RNA) is another functionally uncharacterised member of this family. The PIR121 gene maps to human chromosome 5q34, a region frequently translocated in acute myeloid leukaemia but not known to be amplified or deleted in solid tumours. Interaction between PIR121 and FMRP has been demonstrated, and hence PIR121 has also been termed CYFIP2 (Cytoplasmic FMRP Interacting Protein 2) [, ]. Shyc (Selective HYbridizing Clone) is a cytoplasmic protein of unknown function, expressed in the developing and embryonic nervous system. The protein has also been designated CYFIP1 due to the high sequence identity (98.7%) to its human orthologue. The CYFIP orthologues in Caenorhabditis elegans and Drosophila melanogaster (Fruit fly) share about 51% and 67% sequence identity with the human proteins, respectively []. The high level of conservation manifest throughout the entire CYFIP sequence between various orthologues suggests a number of functionally/structurally important domains. ; PDB: 3P8C_A.
Probab=100.00 E-value=1.1e-194 Score=1704.94 Aligned_cols=612 Identities=67% Similarity=1.158 Sum_probs=498.6
Q ss_pred CCCCCHHHHHHHHH------hcCCccchhhhhhhhhhhhhhhHHHHhhhhccccchhhhhcccccccccccccccceeee
Q psy7088 141 DDSVDWDDVRSLVQ------ATKLPIVCKDSLQQCCDLSQLWYREFYLEMTMGRRIQKCVVRHQHNEECSDLITMEKRIQ 214 (873)
Q Consensus 141 d~sltWeDL~wLR~------~t~lPl~lkgtl~~~~dls~LwfrEfyLe~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iq 214 (873)
...++=+|++.|++ .|.--|+++.||++|||||+|||||||||++. +||
T Consensus 192 ~~~l~~~~~~~i~~F~~~s~~~~~LL~~~~tl~~~~Dls~LWfREfyLEl~~-------------------------~iQ 246 (820)
T PF05994_consen 192 RKDLDSKDLDQIEEFLNKSFFFPHLLNFSETLRQCCDLSQLWFREFYLELTK-------------------------RIQ 246 (820)
T ss_dssp TTTS-HHHHHHHHHHHHHGGGHHHHHTHHHHHHHHS--GGGS--HHHHHHTS--------------------------SS
T ss_pred cccCCHhHHHHHHHHHHHhcchHHHhCCHHHHHHhccHHHHhHHHHhhcccc-------------------------eee
Confidence 34455566666654 26667999999999999999999999999993 999
Q ss_pred cccCCchhHHHHHHhhhcCC-CCcchhhccccccccchHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy7088 215 FPIEMSMPWILTDHILKTKE-PSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQ 293 (873)
Q Consensus 215 FPIe~SlPwIL~~hiL~~~~-~~l~e~ilypLdlYnDaA~~AL~~lk~q~LydEIeAEvnlcfdqlv~kls~~if~~yK~ 293 (873)
||||||||||||||||++++ |+|+|+||||||||||||++||++|||||||||||||||||||||||||||+||+|||+
T Consensus 247 FPIe~SLPwILtdhiL~s~~~~~l~E~ilyPLdlYNDAA~~AL~~lk~q~LyDEIEAEv~lcfdqlv~~lsd~if~~yK~ 326 (820)
T PF05994_consen 247 FPIEMSLPWILTDHILESKDKPSLMEYILYPLDLYNDAAHYALKKLKSQFLYDEIEAEVNLCFDQLVFKLSDQIFTHYKS 326 (820)
T ss_dssp --GGG-HHHHHHHHHHHHT--GGGTTTHHHHHTHHHHHHHHHHHTS-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccCCccHHHHHHHHhcCCcchhHHHHhhhHHHhhHHHHHHHHHHHHhhhHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcChhhHHHHhhcccccccCCCCchHHHHHhhccceecccceehhHHHHHHHHHHHHHHHHHHHHhhhcCCceee
Q psy7088 294 LAASMLLDKRFRVECMAMGTYLLAYPRANRYETLLRQRHVQLLGRSIDLNKLITQRINADMHKSLDLAISKFEHGDITGV 373 (873)
Q Consensus 294 ~Aas~lld~~~~~~~~~~~~~~~~~p~~~R~~~ll~Q~~v~lLGr~idl~~li~qr~n~~~~~~l~~~i~rfe~~~l~~i 373 (873)
+||+++|||+|+.+|...+... ..|+++||++||||||||||||+||||+||+||+|++|+++||.||+|||++|||||
T Consensus 327 ~Aa~~~ld~~~~~~~~~~~~~~-~~~~~~r~~~ll~Qr~v~lLGRsIDL~~Li~QRln~~~~~~le~ai~rfEs~dl~~i 405 (820)
T PF05994_consen 327 LAASMLLDKRFRAELKNSGIAI-LYPPANRYETLLQQRHVQLLGRSIDLNRLITQRLNALFRKSLEFAISRFESSDLTSI 405 (820)
T ss_dssp HHHHHTS-HHHHHHHHHTT------------HHHHT-S-EEETTEEE-HHHHHHHHHHHHHHHHHHHHHHHHHTS-GGGH
T ss_pred HHHHHhcCHHHHHHHHhcCccc-CCCCcchHHHHHhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 9999999999999999888776 788899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhhhcc-cCCcHHHHHHHhcccCCCccchhHHHHHHHhhcCcCcccccCCCcchHHHHHHHhhhc
Q psy7088 374 VELEGLLAVNRLCHKLLSKLL-GLDDYDAMLHEANHNVLAPYGRITLHIFWELNYDFLPNYCYNGATNRITLHIFWELNY 452 (873)
Q Consensus 374 vel~~ll~i~r~tH~lL~~~l-~Ld~F~~~l~e~n~~~~s~~~~i~~~~~~e~~~d~~~~y~~~~~~~rit~~vf~el~~ 452 (873)
||||++|+|+|.||++||+++ +|||||+||+||||+++- ++|| ||||+||||||++
T Consensus 406 vele~ll~i~r~TH~LLse~l~~Ld~Fd~ml~Ean~~vs~-----------------~s~~------gRI~~hv~~eL~~ 462 (820)
T PF05994_consen 406 VELEHLLDILRLTHRLLSEHLLSLDPFDDMLREANHNVSP-----------------VSPY------GRITLHVFWELNY 462 (820)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-----HHHHHHHHTT-SS-------------------SSS-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHhccccc-----------------cccc------cHHHHHHHHHHhc
Confidence 999999999999999999998 999999999999999551 3455 8888888999999
Q ss_pred CCccccccccCCccccccccccccccccccCCCCCcccccccchhHHHHHHHHHhhcccccChHHHHHHHHHhCCCCHHH
Q psy7088 453 DFLPNYCYNGATNRFIKCRGIMFTQQIHREKLPPMTHTYSWGSKQLNMAYYSIYGQYTGFVGAYHFRAMCRLLGYQGIAV 532 (873)
Q Consensus 453 d~~pnycyn~~t~rFvr~~~~~~~~~~~r~~~p~~~~~~~~g~~~l~~a~~~~~~~~~~f~g~~H~~a~~rLlg~~~i~~ 532 (873)
||+||||||++|+| +.|+++++|++||+++++++||+|.||+||++++++|++|||.|||+||||||||+|||+
T Consensus 463 D~~PNy~yn~~T~R------~~~~~~~~r~k~p~~~~~~~~Gsk~l~~a~~~i~~~~~~FvG~pH~~ai~rLLg~~~la~ 536 (820)
T PF05994_consen 463 DFLPNYCYNSSTQR------MVFSEPVQREKPPKAQPSYLFGSKALNAAYQTILSLYRGFVGVPHFKAIVRLLGYRGLAV 536 (820)
T ss_dssp THHHHEEEETTTTE------GGG-------------GGGTTSSHHHHHHHHHHGGGGGS-B-HHHHHHHHHHHHHHHHHH
T ss_pred ccccCceeeCCCCC------CCCCCCCCCCCCCCCCcccccCcHHHHHHHHHHHHHhCCccChHHHHHHHHHhCCCcHHH
Confidence 99999999999999 347899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcccccCCCCCCCCChhHHHHHHHhccccccCchhhHHHHHHHHhhhhHHHHHH
Q psy7088 533 VMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYYHAQLNDIVQYPDAKTELFHNFRELGNTILFCL 612 (873)
Q Consensus 533 ~i~ell~~~~~~i~~~~~~yv~~l~~~mPk~~kLP~~dyGs~G~l~yy~~~L~~~~~Y~dLk~evfq~fREiGN~i~f~~ 612 (873)
||+||++ +|+++++|||++++++|||+||||++|||++|||+||++||+|+++||||| +|||+||||||+|+||+
T Consensus 537 li~ell~----~i~~~~~~~V~~l~~~mPk~~~lP~~dygs~g~~~~y~~~l~~~~~y~dLk-evfq~frEiGN~i~f~~ 611 (820)
T PF05994_consen 537 LIEELLK----LIQNKIEPYVKALMEAMPKSCKLPPFDYGSAGVYDYYEAQLKDIIQYPDLK-EVFQAFREIGNAIVFCL 611 (820)
T ss_dssp HHHHHHH----HHHTHHHHHHHHHHHHS-SB-----GGG-HHHHHHHHHHHTHHHHS-TTTT-THHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHhCCccccCCCccCCCHHHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHHH
Confidence 9999999 777889999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhhchHHHHhHhhhccCCCCCCCcccCCCCcchhh----hhHHHhhhcccceeccccccCchHHHHHhhhcchhhhh
Q psy7088 613 LMEQALSQEEVCDLLHAAPFQNILPRPYCKEGEKPETK----QKRLEQKYASLQIVSNIDRLGTAKQAMIAREGDLLTRE 688 (873)
Q Consensus 613 lLd~aL~q~e~~~~~~aaPf~~iiP~~~~~~g~~~~~~----~~~le~k~~~~~v~~~~~~~g~~~q~~~a~e~dll~~e 688 (873)
+||+||+|+|++|++|||||+|++|++++++|++.+.+ .++++++|+.+++++.+ ||+|||+
T Consensus 612 lLd~al~q~e~~~~~~aapf~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~--------------~dll~k~ 677 (820)
T PF05994_consen 612 LLDQALSQEEVCDLLQAAPFQGIIPRPYVKEGEEQETKFDPTFKRLESKFASLQVVPGV--------------ADLLTKE 677 (820)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGT--------TT--HHHH----HHHHHHHTGGG-HHHHH--------------HHHHHH-
T ss_pred HHHHHHhHHHHHHHHHHhhhcCCCCCccccccchhhhHHHHHHHHHHHHHHHhhccchH--------------HhhhcHH
Confidence 99999999999999999999999999999999887766 78999999998876664 8999999
Q ss_pred hhccCchHHHHHHHHHHhhcCCCCccCCCCCCCeeeeccccchHHHHHHhHhhhcccCC-CCcchhHHhhcCcccchhHH
Q psy7088 689 RLCCGLSIFEVVLNRLRGFLDDPIWVGPPPTNGVINIDECTEFHRLWSALQFVYCIPVG-DTEFTVEELFGEGLNWAGCT 767 (873)
Q Consensus 689 rl~~glsife~~L~ri~~~L~~~~W~g~~p~ngv~~id~~~eF~RlWSaLQF~~C~p~~-~~~~~~~e~fGDGl~WaGct 767 (873)
|+|||+|+||++|+++|++|++ |+|++|+||||+||+|+|||||||||||+||+|+. +++.+++|+||||++|||||
T Consensus 678 ~l~~~~slf~~~L~~~~~~L~~--w~g~~p~ngv~~i~~~~eF~RlWSaLQFv~C~p~~~~~~~~~~e~fGDGl~waGct 755 (820)
T PF05994_consen 678 RLCCGLSLFEYVLARIKSFLES--WSGAPPSNGVMDIDECKEFHRLWSALQFVFCIPEANENEDSVEELFGDGLQWAGCT 755 (820)
T ss_dssp -GGGTEESHHHHHHHHHTT--S--TT-S--TTSS--SSB--SHHHHHHHHHHHHHS----TTS--HHHHHBTHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHh--ccCCCCCCCceecccccHHHHHHHHHHHHHhCCcccCCCcchHHHhcchhhHHHHH
Confidence 9999999999999999999988 99999999999999999999999999999999998 88999999999999999999
Q ss_pred HHHHhcccccccccccceecchhhc----ccCCCcccccccHHHHHHHHHHHHHhhhHHHHHHhh
Q psy7088 768 MIVLLGQQRRFEALDFCYHILRVQR----VDGRDENVKGIHLKRMVDRIRRFQVVNSQIFATLNK 828 (873)
Q Consensus 768 II~LLgQq~rFe~lDF~yhil~V~~----~d~~~~~~~g~~l~~~~~~~~~~~~lN~~iFs~L~~ 828 (873)
||+|||||+|||++||||||+||++ +|+||..++|+++++|++|+||||+||||||++|++
T Consensus 756 iI~LLgQq~~Fe~ldf~yhil~v~~~e~~~~~~d~~~~~~~l~~~v~~i~~~~~Ln~qiF~~l~~ 820 (820)
T PF05994_consen 756 IIYLLGQQRRFEALDFSYHILRVQEVEFAVDGKDELIKGVSLKRMVERIRRFQRLNNQIFSILNK 820 (820)
T ss_dssp HHHHTT-HHHHHHH-HHHHHHHHHH----HH----EETTEEHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhCcHHHHHHHhHHHHHHHHHhhhhhhhcchhhccCCCHHHHHHHHHHHHHHhcCCcccCCC
Confidence 9999999999999999999999999 899999999999999999999999999999999986
No 4
>KOG0538|consensus
Probab=100.00 E-value=1.8e-46 Score=395.91 Aligned_cols=253 Identities=34% Similarity=0.503 Sum_probs=208.8
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|+||+.+|+||++||+++++||+|||||+|+|+|||||.++||||+++|++|++||+||+|+|||++++|++.+|||||+
T Consensus 50 L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYv 129 (363)
T KOG0538|consen 50 LRDVSKIDTSTTVLGQKISAPIMIAPTAMQKMAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYV 129 (363)
T ss_pred heecccccccceeccccccceeEEcchHHHhccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--cc--------cccc-------ccccCcchhhhhhccCCC
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FR--------DISA-------EECSSGLTDYVANQFDDS 143 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~--------~~~~-------~~~~~~~~~~v~~~~d~s 143 (873)
++||+++++|++|||++||||||||||+|++|+|+.|.+ |. ++.. +...++...++..++|++
T Consensus 130 ykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~S 209 (363)
T KOG0538|consen 130 YKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPS 209 (363)
T ss_pred cCchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCC
Confidence 999999999999999999999999999999999999852 33 2211 112356778889999999
Q ss_pred CCHHHHHHHHHhcCCccchhhhhhhhhhh-hhh-hHHHHhhhhccccchhh--------hhcccccccccccccccceee
Q psy7088 144 VDWDDVRSLVQATKLPIVCKDSLQQCCDL-SQL-WYREFYLEMTMGRRIQK--------CVVRHQHNEECSDLITMEKRI 213 (873)
Q Consensus 144 ltWeDL~wLR~~t~lPl~lkgtl~~~~dl-s~L-wfrEfyLe~~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~i 213 (873)
++|+||+|||+.|++||++||+|+.---. +.= =-.=.-+....||.++. -+|=.-++.+..++++.|.|-
T Consensus 210 l~W~Di~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~ 289 (363)
T KOG0538|consen 210 LSWKDIKWLRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRR 289 (363)
T ss_pred CChhhhHHHHhcCcCCeEEEeecccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCccc
Confidence 99999999999999999999999862111 100 00001122344554442 256667788888899999888
Q ss_pred ecccCCchhHHHHHHhhhcCCCCcchhhccccccccch-HHHHHHHHH
Q psy7088 214 QFPIEMSMPWILTDHILKTKEPSMMEYVLYPLDLYNDS-AHYALTVFR 260 (873)
Q Consensus 214 qFPIe~SlPwIL~~hiL~~~~~~l~e~ilypLdlYnDa-A~~AL~~lk 260 (873)
--- ||---+|..+---+-.+++|-|..+-.+ ....|..|+
T Consensus 290 G~D-------VlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~ 330 (363)
T KOG0538|consen 290 GTD-------VLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILR 330 (363)
T ss_pred chH-------HHHHHhcccceEEecCchheeeccccchhHHHHHHHHH
Confidence 777 8888888877777778899999988654 456777777
No 5
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=1.2e-40 Score=367.44 Aligned_cols=167 Identities=44% Similarity=0.635 Sum_probs=147.8
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|+||+++||+|++||+++++||+|||+|+++|+||+||+++||||+++|+||++||+||+|+|||++++ +++.|||||+
T Consensus 52 Lrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~-~~~~wfQlY~ 130 (367)
T PLN02493 52 LIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTG-PGIRFFQLYV 130 (367)
T ss_pred ccCCCCCCCceEECCccccccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcC-CCCcEEEEee
Confidence 789999999999999999999999999999999999999999999999999999999999999999874 4689999999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--cccccc---c------------cccCcchhhhhhccCCC
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FRDISA---E------------ECSSGLTDYVANQFDDS 143 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~~~~~---~------------~~~~~~~~~v~~~~d~s 143 (873)
++||+.++++|+||++|||+|||||||+|+.|+||+|.+ |..... . ....+...++...++++
T Consensus 131 ~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (367)
T PLN02493 131 YKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRT 210 (367)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCC
Confidence 999999999999999999999999999999999999864 321100 0 01122344556678999
Q ss_pred CCHHHHHHHHHhcCCccchhhhhhh
Q psy7088 144 VDWDDVRSLVQATKLPIVCKDSLQQ 168 (873)
Q Consensus 144 ltWeDL~wLR~~t~lPl~lkgtl~~ 168 (873)
+||+||+|||+.|++|+++||+++.
T Consensus 211 ~tW~di~wlr~~~~~PiivKgV~~~ 235 (367)
T PLN02493 211 LSWKDVQWLQTITKLPILVKGVLTG 235 (367)
T ss_pred CCHHHHHHHHhccCCCEEeecCCCH
Confidence 9999999999999999999999753
No 6
>PLN02979 glycolate oxidase
Probab=100.00 E-value=2e-40 Score=363.66 Aligned_cols=167 Identities=44% Similarity=0.625 Sum_probs=147.8
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|+||+++||+|++||+++++||+|||+|+++|+||+||.++||||+++|+||++||+|++|+|||+++. +++.|||+|+
T Consensus 51 Lrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~-~~~~wfQLY~ 129 (366)
T PLN02979 51 LIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTG-PGIRFFQLYV 129 (366)
T ss_pred ccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhcc-CCCeEEEEee
Confidence 789999999999999999999999999999999999999999999999999999999999999999874 4689999999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--ccccc-----cc----------cccCcchhhhhhccCCC
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FRDIS-----AE----------ECSSGLTDYVANQFDDS 143 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~~~~-----~~----------~~~~~~~~~v~~~~d~s 143 (873)
++||+.++++|+||++|||+|||||||+|+.|+||+|.+ |.... .. ....+...++...++++
T Consensus 130 ~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (366)
T PLN02979 130 YKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRT 209 (366)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCC
Confidence 999999999999999999999999999999999999864 32110 00 01122344555678899
Q ss_pred CCHHHHHHHHHhcCCccchhhhhhh
Q psy7088 144 VDWDDVRSLVQATKLPIVCKDSLQQ 168 (873)
Q Consensus 144 ltWeDL~wLR~~t~lPl~lkgtl~~ 168 (873)
+||+||+|||+.|++|+++||+++.
T Consensus 210 ltW~dl~wlr~~~~~PvivKgV~~~ 234 (366)
T PLN02979 210 LSWKDVQWLQTITKLPILVKGVLTG 234 (366)
T ss_pred CCHHHHHHHHhccCCCEEeecCCCH
Confidence 9999999999999999999999754
No 7
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=8.4e-40 Score=362.54 Aligned_cols=167 Identities=28% Similarity=0.484 Sum_probs=146.1
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|+||+++||+|++||+++++||+|||+|+++++||+||+++||||+++|+||++||.|++|+|||++++ +++.|||||+
T Consensus 52 L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~-~~~~wfQlY~ 130 (381)
T PRK11197 52 LKDMSDLSLETTLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAI-KRPMWFQLYV 130 (381)
T ss_pred ccCCCCCCCceEECCcccccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhcc-CCCeEEEEEe
Confidence 689999999999999999999999999999999999999999999999999999999999999999875 4689999999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--ccccc-------c-----cc--------------c----
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FRDIS-------A-----EE--------------C---- 128 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~~~~-------~-----~~--------------~---- 128 (873)
++||+.++++|+||++|||+|||||||+|+.|+||+|.+ |.... . .+ .
T Consensus 131 ~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~ 210 (381)
T PRK11197 131 LRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAY 210 (381)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCcccccccc
Confidence 999999999999999999999999999999999999853 32110 0 00 0
Q ss_pred ------cCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhhhhhh
Q psy7088 129 ------SSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDSLQQ 168 (873)
Q Consensus 129 ------~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgtl~~ 168 (873)
......+....+++++||+||+|||+.|++|+++||+++.
T Consensus 211 ~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV~s~ 256 (381)
T PRK11197 211 LGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDP 256 (381)
T ss_pred cccccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEecCCH
Confidence 0011123455678999999999999999999999999776
No 8
>PLN02535 glycolate oxidase
Probab=100.00 E-value=1.1e-39 Score=359.88 Aligned_cols=167 Identities=41% Similarity=0.654 Sum_probs=148.6
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|+||+++||+|++||+++++||+|||+|+++|+||+||+++||||+++|+||++||.|++|+|||+++. +++.|||||+
T Consensus 54 L~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~-~~~~wfQlY~ 132 (364)
T PLN02535 54 LVDVSKIDMSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSC-NAVRFLQLYV 132 (364)
T ss_pred ccCCCCCCCceEECCccccccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcC-CCCeEEEEec
Confidence 789999999999999999999999999999999999999999999999999999999999999999874 5789999999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--ccccccc------------cccCcchhhhhhccCCCCCH
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FRDISAE------------ECSSGLTDYVANQFDDSVDW 146 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~~~~~~------------~~~~~~~~~v~~~~d~sltW 146 (873)
++||+.++++|+|||+|||+|||||||+|+.|+||+|.+ |...... ....+...++...+++++||
T Consensus 133 ~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW 212 (364)
T PLN02535 133 YKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSW 212 (364)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCH
Confidence 999999999999999999999999999999999999864 3211000 01123444566678999999
Q ss_pred HHHHHHHHhcCCccchhhhhhh
Q psy7088 147 DDVRSLVQATKLPIVCKDSLQQ 168 (873)
Q Consensus 147 eDL~wLR~~t~lPl~lkgtl~~ 168 (873)
+||+|||+.|++|+++||+++.
T Consensus 213 ~~i~~lr~~~~~PvivKgV~~~ 234 (364)
T PLN02535 213 KDIEWLRSITNLPILIKGVLTR 234 (364)
T ss_pred HHHHHHHhccCCCEEEecCCCH
Confidence 9999999999999999999776
No 9
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=3.3e-39 Score=355.68 Aligned_cols=166 Identities=29% Similarity=0.438 Sum_probs=144.4
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|+||+++||+|++||+++++||+|||+|+++|+||+||+++||||+++|+||++||+|++|+|||+++.+ ++.|||||+
T Consensus 46 Lr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~-~~~wfQLY~ 124 (361)
T cd04736 46 LVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMSIEDVARQAD-GDLWFQLYV 124 (361)
T ss_pred cCCCCCCCCceeECCccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcC-CCeEEEEEe
Confidence 7899999999999999999999999999999999999999999999999999999999999999998864 689999999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--ccccc-------------ccc-------------c----
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FRDIS-------------AEE-------------C---- 128 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~~~~-------------~~~-------------~---- 128 (873)
+ ||++++++|+||++|||+|||||||+|+.|+||+|.+ |.... +.+ .
T Consensus 125 ~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 203 (361)
T cd04736 125 V-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASD 203 (361)
T ss_pred c-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccc
Confidence 6 5999999999999999999999999999999999853 32110 000 0
Q ss_pred ----cCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhhhhhh
Q psy7088 129 ----SSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDSLQQ 168 (873)
Q Consensus 129 ----~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgtl~~ 168 (873)
..+...++..+.+++++|++|+|||+.|++|+++||+++.
T Consensus 204 ~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiKgV~~~ 247 (361)
T cd04736 204 DAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKGIVTA 247 (361)
T ss_pred cccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEecCCCH
Confidence 0012234445678999999999999999999999999765
No 10
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=5.6e-39 Score=356.41 Aligned_cols=168 Identities=34% Similarity=0.512 Sum_probs=146.1
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|+||+++||+|+|||+++++||+|||+|+++|+||+||+++||||+++|+||++||.|++|+|||+++.++++.|||||+
T Consensus 67 L~dv~~~dt~t~llG~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~ 146 (383)
T cd03332 67 LRGVTERDLSVELFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYW 146 (383)
T ss_pred cccCCCCCCceeeCCccccccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeC
Confidence 78999999999999999999999999999999999999999999999999999999999999999988666789999999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--ccccc------c---c--c------cc-----------C
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FRDIS------A---E--E------CS-----------S 130 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~~~~------~---~--~------~~-----------~ 130 (873)
++||+.++++|+||++|||+|||||||+|+.|+||+|.+ |.... . . + .. .
T Consensus 147 ~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (383)
T cd03332 147 PKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEA 226 (383)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccch
Confidence 999999999999999999999999999999999999853 31100 0 0 0 00 0
Q ss_pred cchhhhhhccCCCCCHHHHHHHHHhcCCccchhhhhhh
Q psy7088 131 GLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDSLQQ 168 (873)
Q Consensus 131 ~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgtl~~ 168 (873)
+........+++++||++|+|||+.|++|+++||+++.
T Consensus 227 ~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivKgV~~~ 264 (383)
T cd03332 227 AVARFVSVFSGPSLTWEDLAFLREWTDLPIVLKGILHP 264 (383)
T ss_pred hHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEecCCCH
Confidence 11122334468999999999999999999999999775
No 11
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=3.9e-38 Score=347.83 Aligned_cols=167 Identities=28% Similarity=0.403 Sum_probs=144.2
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|+||+++||+|++||+++++||+|||+|+++|+||+||.++||||+++|+||++||+|++|+|||+++.++++.|||||+
T Consensus 62 L~dv~~~d~~t~llG~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~ 141 (367)
T TIGR02708 62 LQDVENPSTEIEFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYM 141 (367)
T ss_pred ccCCCCCCCceeeCCcccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEec
Confidence 68999999999999999999999999999999999999999999999999999999999999999987556789999999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--cccccccc-------ccCcc-hhhhhhccCCCCCHHHHH
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FRDISAEE-------CSSGL-TDYVANQFDDSVDWDDVR 150 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~~~~~~~-------~~~~~-~~~v~~~~d~sltWeDL~ 150 (873)
++||++++++|+||+++||+|||||||+|+.|+||+|.+ |....... ...+. ...+....+++++|++|+
T Consensus 142 ~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~ 221 (367)
T TIGR02708 142 SKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIE 221 (367)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHH
Confidence 999999999999999999999999999999999999854 32110000 00000 111223446889999999
Q ss_pred HHHHhcCCccchhhhhh
Q psy7088 151 SLVQATKLPIVCKDSLQ 167 (873)
Q Consensus 151 wLR~~t~lPl~lkgtl~ 167 (873)
|||+.|++|+++||++.
T Consensus 222 ~l~~~~~~PvivKGv~~ 238 (367)
T TIGR02708 222 EIAGYSGLPVYVKGPQC 238 (367)
T ss_pred HHHHhcCCCEEEeCCCC
Confidence 99999999999999885
No 12
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=1.7e-36 Score=333.88 Aligned_cols=167 Identities=28% Similarity=0.426 Sum_probs=144.7
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|+||+++||+|++||+++++||+|||+|+++|+||+||+++||||+++|++|++||.|++|+|||+++.|+++.|||+|+
T Consensus 54 L~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~ 133 (351)
T cd04737 54 LQGVESPDTSTELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYM 133 (351)
T ss_pred ccCCCCCCCceEeCCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEee
Confidence 68999999999999999999999999999999999999999999999999999999999999999988756799999999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--ccccc---cc--c-----ccCcchhhhhhccCCCCCHHH
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FRDIS---AE--E-----CSSGLTDYVANQFDDSVDWDD 148 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~~~~---~~--~-----~~~~~~~~v~~~~d~sltWeD 148 (873)
++|++.++++|+||+++||++|++|||+|+.|+||+|.+ |.... .. . ...+. .......+++++|++
T Consensus 134 ~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 212 (351)
T cd04737 134 SKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGI-SEIYAAAKQKLSPAD 212 (351)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcch-hhhhhhccCCCCHHH
Confidence 999999999999999999999999999999999999864 32110 00 0 00011 112234567899999
Q ss_pred HHHHHHhcCCccchhhhhhh
Q psy7088 149 VRSLVQATKLPIVCKDSLQQ 168 (873)
Q Consensus 149 L~wLR~~t~lPl~lkgtl~~ 168 (873)
|+|+|+.|++|+.+||++..
T Consensus 213 l~~lr~~~~~PvivKgv~~~ 232 (351)
T cd04737 213 IEFIAKISGLPVIVKGIQSP 232 (351)
T ss_pred HHHHHHHhCCcEEEecCCCH
Confidence 99999999999999998644
No 13
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=1.6e-35 Score=327.27 Aligned_cols=249 Identities=29% Similarity=0.429 Sum_probs=195.1
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|+||+++||+|+|||+++++||+|||+|+++++||+||.++||||+++|++|++|+.+++++|||+++.+ ++.|||+|+
T Consensus 40 L~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~~~e~ia~~~~-~~~~~Qly~ 118 (356)
T PF01070_consen 40 LRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSASLEEIAAASG-GPLWFQLYP 118 (356)
T ss_dssp SSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSSCHHHHHHHCT-SEEEEEEEG
T ss_pred cCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccCCHHHHHhhcc-CCeEEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999998866 789999999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--ccc--------cc-----cc---------------cccC
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FRD--------IS-----AE---------------ECSS 130 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~~--------~~-----~~---------------~~~~ 130 (873)
++|++.+.++++|||++||+||+||||+|+.|+||+|.+ |.. +. +. ....
T Consensus 119 ~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 198 (356)
T PF01070_consen 119 PRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGA 198 (356)
T ss_dssp BSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTC
T ss_pred ecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcch
Confidence 999999999999999999999999999999999999753 211 00 00 0011
Q ss_pred cchhhhhhccCCCCCHHHHHHHHHhcCCccchhhhhhh-----hhhhhhhhHHHHhhhhccccchh--------hhhccc
Q psy7088 131 GLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDSLQQ-----CCDLSQLWYREFYLEMTMGRRIQ--------KCVVRH 197 (873)
Q Consensus 131 ~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgtl~~-----~~dls~LwfrEfyLe~~~g~~~~--------~~~~~~ 197 (873)
....+.....+++++|++|+|+|+.|++|+++|||++. |.|.+- .=+++.-..||-.+ ..++|.
T Consensus 199 ~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~---~~i~vs~hGGr~~d~~~~~~~~L~~i~~ 275 (356)
T PF01070_consen 199 AAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGV---DGIDVSNHGGRQLDWGPPTIDALPEIRA 275 (356)
T ss_dssp HHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT----SEEEEESGTGTSSTTS-BHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHHHHHhcCC---CEEEecCCCcccCccccccccccHHHHh
Confidence 22345566778999999999999999999999999876 444443 33445555666444 347777
Q ss_pred ccccccccccccceeeecccCCchhHHHHHHhhhcCCCCcchhhccccccc-cchHHHHHHHHH
Q psy7088 198 QHNEECSDLITMEKRIQFPIEMSMPWILTDHILKTKEPSMMEYVLYPLDLY-NDSAHYALTVFR 260 (873)
Q Consensus 198 ~~~~~~~~~~~~~~~iqFPIe~SlPwIL~~hiL~~~~~~l~e~ilypLdlY-nDaA~~AL~~lk 260 (873)
.+..++..+++.|-|--.- |+.--+|..+--++...++|.|..+ -+...+++..|+
T Consensus 276 ~~~~~~~i~~dgGir~g~D-------v~kalaLGA~~v~igr~~l~~l~~~g~~gv~~~~~~l~ 332 (356)
T PF01070_consen 276 AVGDDIPIIADGGIRRGLD-------VAKALALGADAVGIGRPFLYALAAGGEEGVERVLEILK 332 (356)
T ss_dssp HHTTSSEEEEESS--SHHH-------HHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCeeEEEeCCCCCHHH-------HHHHHHcCCCeEEEccHHHHHHHHhhHHHHHHHHHHHH
Confidence 7777788888888777766 7888888888888889999998544 344445555554
No 14
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=9.5e-35 Score=319.67 Aligned_cols=168 Identities=35% Similarity=0.548 Sum_probs=147.0
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhc-CCCCceEEEEE
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ-NPSTTLWLQMY 79 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa-~p~g~~WFQLY 79 (873)
|+||+++||+|++||+++++||+|||+|+++++||+||+++||||+++|++|++||.+++|+|||+++ +|+++.|||||
T Consensus 46 L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly 125 (344)
T cd02922 46 LRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLY 125 (344)
T ss_pred cCCCCCCCCceEECCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999877 45689999999
Q ss_pred eeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--ccccc---ccc-----ccCcchhhhhhccCCCCCHHHH
Q psy7088 80 IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FRDIS---AEE-----CSSGLTDYVANQFDDSVDWDDV 149 (873)
Q Consensus 80 ~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~~~~---~~~-----~~~~~~~~v~~~~d~sltWeDL 149 (873)
+++||+.++++++||+++||+||+||||+|+.|+||+|.+ |.... ... ...+.........++..+|++|
T Consensus 126 ~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 205 (344)
T cd02922 126 VNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDI 205 (344)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHH
Confidence 9999999999999999999999999999999999999854 33211 000 1112233445567888999999
Q ss_pred HHHHHhcCCccchhhhhhh
Q psy7088 150 RSLVQATKLPIVCKDSLQQ 168 (873)
Q Consensus 150 ~wLR~~t~lPl~lkgtl~~ 168 (873)
+|+|+.|++|+++||+...
T Consensus 206 ~~l~~~~~~PvivKgv~~~ 224 (344)
T cd02922 206 KWLRKHTKLPIVLKGVQTV 224 (344)
T ss_pred HHHHHhcCCcEEEEcCCCH
Confidence 9999999999999999653
No 15
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=99.94 E-value=5.1e-27 Score=259.38 Aligned_cols=245 Identities=24% Similarity=0.309 Sum_probs=195.6
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|.+++++|++|++||+++++||+||||++++|+|++||.+.|++|+++|+|+++|+++|+++|++.+..+ ||+|+
T Consensus 46 L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~-----~q~y~ 120 (360)
T COG1304 46 LPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP-----FQLYF 120 (360)
T ss_pred CCCcccCccceEecCccccCCEEEeccccccccChhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc-----hhhhh
Confidence 6789999999999999999999999999999999999999999999999999999999999999987754 89999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--cc--------ccc-----ccc--cc----Ccchhhhhhc
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FR--------DIS-----AEE--CS----SGLTDYVANQ 139 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~--------~~~-----~~~--~~----~~~~~~v~~~ 139 (873)
.+||+.+.++++||+++|++++++|||+|+.|+|++|.. +. |.. ++. .. ..+..+....
T Consensus 121 ~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~ 200 (360)
T COG1304 121 SKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSAL 200 (360)
T ss_pred HHHHHhhHHHHHHHHhcCCcceeeccCccchHHHHHHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhc
Confidence 999999999999999999999999999999999998731 11 110 000 11 1245667788
Q ss_pred cCCCCCHHHHHHHHHhcCCccchhhhhhh-----hhhhhhhhHHHHhhhhccccchh--------hhhcccccccccccc
Q psy7088 140 FDDSVDWDDVRSLVQATKLPIVCKDSLQQ-----CCDLSQLWYREFYLEMTMGRRIQ--------KCVVRHQHNEECSDL 206 (873)
Q Consensus 140 ~d~sltWeDL~wLR~~t~lPl~lkgtl~~-----~~dls~LwfrEfyLe~~~g~~~~--------~~~~~~~~~~~~~~~ 206 (873)
.+|.++|||++||++.|++||.+||++.. ..+.|. --....-..||-.+ ..+++.-+..+++.+
T Consensus 201 ~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg~---~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi 277 (360)
T COG1304 201 SVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGAGGTGA---DGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVI 277 (360)
T ss_pred CCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhhccCCc---eEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEE
Confidence 89999999999999999999999999983 333332 11122222333222 446777777777777
Q ss_pred cccceeeecccCCchhHHHHHHhhhcCCCCcchhhccccccccch-HHHHHHHHH
Q psy7088 207 ITMEKRIQFPIEMSMPWILTDHILKTKEPSMMEYVLYPLDLYNDS-AHYALTVFR 260 (873)
Q Consensus 207 ~~~~~~iqFPIe~SlPwIL~~hiL~~~~~~l~e~ilypLdlYnDa-A~~AL~~lk 260 (873)
++.|-|--=- |+---+|..+-..+.-+++|+|..+.-+ ...++..++
T Consensus 278 ~dGGiR~G~D-------v~KAlALGA~~v~igrp~L~~l~~~g~~GV~~~le~~~ 325 (360)
T COG1304 278 ADGGIRSGLD-------VAKALALGADAVGIGRPFLYGLAAGGEAGVERVLEIIR 325 (360)
T ss_pred ecCCCCCHHH-------HHHHHHhCCchhhhhHHHHHHHHhccHHHHHHHHHHHH
Confidence 7777666554 6666677777778889999999999988 777777766
No 16
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.81 E-value=1.5e-19 Score=195.91 Aligned_cols=137 Identities=47% Similarity=0.750 Sum_probs=127.6
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|++++++||+|++||++++.||++||+|+.++.|++++.++|++|+++|+++++|+.++.|.|++.+..+ ++.|+|+|.
T Consensus 46 l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~-~~~~~ql~~ 124 (299)
T cd02809 46 LRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAP-GPRWFQLYV 124 (299)
T ss_pred CCCCCCCCCceEECCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcC-CCeEEEEee
Confidence 5788999999999999999999999999999999999999999999999999999999999999997765 789999999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCcc
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPI 160 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl 160 (873)
..|.+.+.++++++++.|+++|.+++|+|..|.| .+|+.++|+|+.|++|+
T Consensus 125 ~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-----------------------------~~~~~i~~l~~~~~~pv 175 (299)
T cd02809 125 PRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-----------------------------LTWDDLAWLRSQWKGPL 175 (299)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC-----------------------------CCHHHHHHHHHhcCCCE
Confidence 8899999999999999999999999999986633 57999999999999999
Q ss_pred chhhhhh
Q psy7088 161 VCKDSLQ 167 (873)
Q Consensus 161 ~lkgtl~ 167 (873)
.+|++++
T Consensus 176 ivK~v~s 182 (299)
T cd02809 176 ILKGILT 182 (299)
T ss_pred EEeecCC
Confidence 9998744
No 17
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=98.55 E-value=1.7e-07 Score=103.80 Aligned_cols=133 Identities=20% Similarity=0.242 Sum_probs=89.4
Q ss_pred CCCCCCCcceEcCcccCCcceechhhhhhcCCChhH---HHHHHHHhhcCCceecCCCCC--------CCHHHHHhcCCC
Q psy7088 3 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGE---VATARAAGMMDAIMILSLMST--------TSLEEVRAQNPS 71 (873)
Q Consensus 3 dVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE---~a~ARAAa~aGip~~LSt~Ss--------~SlEeIaaa~p~ 71 (873)
+++++||+|++||.+++.||++||+++. +..++ .++|++|.++|+++.+++.+. .+++.+.+..++
T Consensus 36 ~~~~id~s~~~~G~~l~~Pi~ia~mtGg---~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e~~~~~~~vr~~~~~ 112 (326)
T cd02811 36 DLDDIDLSTEFLGKRLSAPLLISAMTGG---SEKAKEINRNLAEAAEELGIAMGVGSQRAALEDPELAESFTVVREAPPN 112 (326)
T ss_pred CcccCCCeeEECCceecCCEEEeCCCCC---ChHHHHHHHHHHHHHHHcCCCeEecCchhhccChhhhhHHHHHHHhCCC
Confidence 6789999999999999999999999753 44444 799999999999999988742 244555555554
Q ss_pred CceEEEEEeeC----CHHHHHHHHHHHHHcCCcEEEEeeccCcc-CcccccccccccccccccCcchhhhhhccCCCC-C
Q psy7088 72 TTLWLQMYIFK----DRALSLQMVQRAERSGYSAIVITMDTAVL-GSRYHISKFRDISAEECSSGLTDYVANQFDDSV-D 145 (873)
Q Consensus 72 g~~WFQLY~~~----Dr~~~~~LL~RAe~AG~kALvvTVDtPv~-G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sl-t 145 (873)
++..--+-.+. +.+...+.+ +.+++.|+-+.++.+.. ...+ .+..+ .
T Consensus 113 ~p~~~Nl~~~~~~~~~~~~~~~~i---~~~~adalel~l~~~q~~~~~~------------------------~~~df~~ 165 (326)
T cd02811 113 GPLIANLGAVQLNGYGVEEARRAV---EMIEADALAIHLNPLQEAVQPE------------------------GDRDFRG 165 (326)
T ss_pred ceEEeecCccccCCCCHHHHHHHH---HhcCCCcEEEeCcchHhhcCCC------------------------CCcCHHH
Confidence 44222222222 444444443 34577888887753221 0000 01111 3
Q ss_pred H-HHHHHHHHhcCCccchhhh
Q psy7088 146 W-DDVRSLVQATKLPIVCKDS 165 (873)
Q Consensus 146 W-eDL~wLR~~t~lPl~lkgt 165 (873)
| +.|+++++.++.|+.+|++
T Consensus 166 ~~~~i~~l~~~~~vPVivK~~ 186 (326)
T cd02811 166 WLERIEELVKALSVPVIVKEV 186 (326)
T ss_pred HHHHHHHHHHhcCCCEEEEec
Confidence 5 6799999999999999975
No 18
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=98.51 E-value=1.6e-07 Score=104.96 Aligned_cols=134 Identities=19% Similarity=0.230 Sum_probs=87.9
Q ss_pred CCCCCCCcceEcCcccCCcceechhhhhhcCCChhH---HHHHHHHhhcCCceecCCCCC--------CCHHHHHhcCCC
Q psy7088 3 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGE---VATARAAGMMDAIMILSLMST--------TSLEEVRAQNPS 71 (873)
Q Consensus 3 dVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE---~a~ARAAa~aGip~~LSt~Ss--------~SlEeIaaa~p~ 71 (873)
+++++||+|+|||.+++.||+++|+++. +...+ .++|++|.++|+++++++.+. .+++.+.+.+|+
T Consensus 44 ~~~~vd~s~~~~g~~l~~Pi~i~~MtGg---s~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~~~~~~~~vr~~~p~ 120 (352)
T PRK05437 44 DLDDIDLSTEFLGKKLSAPFLINAMTGG---SEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPELADSFSVVRKVAPD 120 (352)
T ss_pred ChhhccceeeECCceecCCEEecccCCC---ChhHHHHHHHHHHHHHHcCCCeEecccHhhccChhhHHHHHHHHHHCCC
Confidence 6789999999999999999999997753 33332 699999999999999988762 244445555666
Q ss_pred CceEEEEEeeC----CHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCC-CH
Q psy7088 72 TTLWLQMYIFK----DRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSV-DW 146 (873)
Q Consensus 72 g~~WFQLY~~~----Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sl-tW 146 (873)
++.+--|-.+. +.+... +.++.+++.|+-+-+..+.-- ..+ ..+..+ .|
T Consensus 121 ~p~~aNl~~~~~~~~~~~~~~---~~~~~~~adal~l~l~~~qe~--------------------~~p---~g~~~f~~~ 174 (352)
T PRK05437 121 GLLFANLGAVQLYGYGVEEAQ---RAVEMIEADALQIHLNPLQEL--------------------VQP---EGDRDFRGW 174 (352)
T ss_pred ceEEeecCccccCCCCHHHHH---HHHHhcCCCcEEEeCccchhh--------------------cCC---CCcccHHHH
Confidence 65444333322 334333 444455777777765321110 000 001111 23
Q ss_pred -HHHHHHHHhcCCccchhhh
Q psy7088 147 -DDVRSLVQATKLPIVCKDS 165 (873)
Q Consensus 147 -eDL~wLR~~t~lPl~lkgt 165 (873)
+.|+++++.++.|+.+|++
T Consensus 175 le~i~~i~~~~~vPVivK~~ 194 (352)
T PRK05437 175 LDNIAEIVSALPVPVIVKEV 194 (352)
T ss_pred HHHHHHHHHhhCCCEEEEeC
Confidence 6799999999999999976
No 19
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=98.38 E-value=5.7e-07 Score=99.90 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=85.8
Q ss_pred CCCCCCCCcceEcCcccCCcceechhhhhhcCCChhH---HHHHHHHhhcCCceecCCCCC--------CCHHHHHhcCC
Q psy7088 2 RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGE---VATARAAGMMDAIMILSLMST--------TSLEEVRAQNP 70 (873)
Q Consensus 2 rdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE---~a~ARAAa~aGip~~LSt~Ss--------~SlEeIaaa~p 70 (873)
.|++++||||++||++++.||++||+++. ++.+. ..+|++|+++|+++++++.+. .+.+.+.+..+
T Consensus 36 ~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg---~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~~~~~~~vr~~~~ 112 (333)
T TIGR02151 36 INLDDIDLTTEFLGKRLKAPFYINAMTGG---SEEAGKINRNLARAARELGIPMGVGSQRAALKDPETADTFEVVREEAP 112 (333)
T ss_pred CCcccCCCceEECCccccCCEEEeCCCCC---chhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhhHhHHHHHHHhCC
Confidence 36789999999999999999999997643 34443 589999999999999987651 13344445456
Q ss_pred CCceEEEEEeeCCHH-HHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCC-CH-H
Q psy7088 71 STTLWLQMYIFKDRA-LSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSV-DW-D 147 (873)
Q Consensus 71 ~g~~WFQLY~~~Dr~-~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sl-tW-e 147 (873)
+.+..--+-...... ..++..+.++..++.|+-+-+..+.-- . . ...+..+ .| +
T Consensus 113 ~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~-----------~---------~---p~g~~~f~~~le 169 (333)
T TIGR02151 113 NGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQEL-----------V---------Q---PEGDRNFKGWLE 169 (333)
T ss_pred CCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccc-----------c---------C---CCCCcCHHHHHH
Confidence 555333222111111 022333334445666766665432110 0 0 0001112 35 7
Q ss_pred HHHHHHHhcCCccchhhh
Q psy7088 148 DVRSLVQATKLPIVCKDS 165 (873)
Q Consensus 148 DL~wLR~~t~lPl~lkgt 165 (873)
.|+++++.++.|+.+|++
T Consensus 170 ~i~~i~~~~~vPVivK~~ 187 (333)
T TIGR02151 170 KIAEICSQLSVPVIVKEV 187 (333)
T ss_pred HHHHHHHhcCCCEEEEec
Confidence 799999999999999975
No 20
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=97.14 E-value=0.00084 Score=74.72 Aligned_cols=118 Identities=12% Similarity=0.057 Sum_probs=81.5
Q ss_pred CCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHH----hcCCCCceEEEE
Q psy7088 3 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVR----AQNPSTTLWLQM 78 (873)
Q Consensus 3 dVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIa----aa~p~g~~WFQL 78 (873)
+++++|++|+++|.++++||+++++- -..+..+|++|++.|...++=- .++|+.. +..+. |+
T Consensus 18 s~~dVdlst~~~~~~l~~P~~inAM~------t~in~~LA~~a~~~G~~~i~hK---~~~E~~~sfvrk~k~~-----~L 83 (321)
T TIGR01306 18 SRSECDTSVTLGKHKFKLPVVPANMQ------TIIDEKLAEQLAENGYFYIMHR---FDEESRIPFIKDMQER-----GL 83 (321)
T ss_pred CHHHceeeEEECCcEecCcEEeeccc------hhhhHHHHHHHHHcCCEEEEec---CCHHHHHHHHHhcccc-----cc
Confidence 45689999999999999999999982 3788999999999998888754 2666643 23332 23
Q ss_pred Eee----CCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHHHHH
Q psy7088 79 YIF----KDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQ 154 (873)
Q Consensus 79 Y~~----~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~ 154 (873)
++. -..+. .+.+..-.++|..+=+|.+|++.. ... .-++.|+|+|+
T Consensus 84 ~v~~SvG~t~e~-~~r~~~lv~a~~~~d~i~~D~ahg--------------------~s~---------~~~~~i~~i~~ 133 (321)
T TIGR01306 84 FASISVGVKACE-YEFVTQLAEEALTPEYITIDIAHG--------------------HSN---------SVINMIKHIKT 133 (321)
T ss_pred EEEEEcCCCHHH-HHHHHHHHhcCCCCCEEEEeCccC--------------------chH---------HHHHHHHHHHH
Confidence 332 22222 233444455676555667776432 111 23688999999
Q ss_pred hcCCccchhh
Q psy7088 155 ATKLPIVCKD 164 (873)
Q Consensus 155 ~t~lPl~lkg 164 (873)
.|+.|++++|
T Consensus 134 ~~p~~~vi~G 143 (321)
T TIGR01306 134 HLPDSFVIAG 143 (321)
T ss_pred hCCCCEEEEe
Confidence 9999988888
No 21
>KOG3534|consensus
Probab=96.47 E-value=0.00038 Score=81.95 Aligned_cols=125 Identities=22% Similarity=0.229 Sum_probs=82.8
Q ss_pred cccceehhHHHHHHHHHHHHHHHHHHHHhhhcCCceeehhhhhHHHHHHHHHHHhhhcccCCcHHHHHHHhc---ccCCC
Q psy7088 336 LGRSIDLNKLITQRINADMHKSLDLAISKFEHGDITGVVELEGLLAVNRLCHKLLSKLLGLDDYDAMLHEAN---HNVLA 412 (873)
Q Consensus 336 LGr~idl~~li~qr~n~~~~~~l~~~i~rfe~~~l~~ivel~~ll~i~r~tH~lL~~~l~Ld~F~~~l~e~n---~~~~s 412 (873)
.-++--...|+.||--+++.+|+|. +|+-++-+.+...=.-=++|.|+++++|+++++|| +|.|+| |+++|
T Consensus 735 ~P~~nRyEtLLkQRHVQLLGRSiDL--NrlitQRvnaam~Ksld~AI~rFEsedltsIVELd----~Lle~NRl~H~LLs 808 (1253)
T KOG3534|consen 735 YPPSNRYETLLKQRHVQLLGRSIDL--NRLITQRVNAAMYKSLDLAISRFESEDLTSIVELD----GLLEINRLCHKLLS 808 (1253)
T ss_pred CCCchhHHHHHHHHHHHHhcccccH--HHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhH----hHHHHHHHHHHHHH
Confidence 3344556789999999999998774 23323333332222223689999999999999999 999999 99999
Q ss_pred ccchhHHH--HHHHhhcCcCcccccCCCcchHHHHHHHhhhcCCccccccccCCcccccccccc-ccccccccCCC
Q psy7088 413 PYGRITLH--IFWELNYDFLPNYCYNGATNRITLHIFWELNYDFLPNYCYNGATNRFIKCRGIM-FTQQIHREKLP 485 (873)
Q Consensus 413 ~~~~i~~~--~~~e~~~d~~~~y~~~~~~~rit~~vf~el~~d~~pnycyn~~t~rFvr~~~~~-~~~~~~r~~~p 485 (873)
.+..++.+ ||+|+ ++ -+.+= ||-|.--.|=+.+-.|++....+ -+.-.-|.+-|
T Consensus 809 ~~l~ld~FD~mf~EA------NH--------nV~aP-----yGRITLHVFwELNyDFlpNycYNgsTnRFvRt~~~ 865 (1253)
T KOG3534|consen 809 KYLTLDPFDAMFREA------NH--------NVSAP-----YGRITLHVFWELNYDFLPNYCYNGSTNRFVRTRHP 865 (1253)
T ss_pred HHhccCchHHHHHHh------cc--------ccCCC-----CceeEEEEeeeeccccchhhhccCccchhhhhccc
Confidence 99998888 88774 33 22333 45455555555556788774321 22334455554
No 22
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.40 E-value=0.0082 Score=67.17 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=76.9
Q ss_pred CCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHh----cCCCCceEEE
Q psy7088 2 RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRA----QNPSTTLWLQ 77 (873)
Q Consensus 2 rdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaa----a~p~g~~WFQ 77 (873)
.+++++|++|+++|.++++||+|+++- -..+..+|++|++.|...++=- .++|+.++ ..+. |
T Consensus 20 ~s~~dvdlst~~~~~~l~~P~~inAM~------t~iN~~LA~~a~~~G~~~~~~k---~~~e~~~~~~r~~~~~-----~ 85 (326)
T PRK05458 20 NSRSECDTSVTLGPRTFKLPVVPANMQ------TIIDEKIAEWLAENGYFYIMHR---FDPEARIPFIKDMHEQ-----G 85 (326)
T ss_pred CCHHHcccceEECCcEecCcEEEeccc------chhHHHHHHHHHHcCCEEEEec---CCHHHHHHHHHhcccc-----c
Confidence 356789999999999999999999982 2678899999999988877744 36677542 3333 3
Q ss_pred EEee----CCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHHHH
Q psy7088 78 MYIF----KDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLV 153 (873)
Q Consensus 78 LY~~----~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR 153 (873)
|++. .+.+.. +.++.-.+||+.+=++.||++... ... -.+-|+|||
T Consensus 86 l~v~~~vg~~~~~~-~~~~~Lv~ag~~~d~i~iD~a~gh--------------------~~~---------~~e~I~~ir 135 (326)
T PRK05458 86 LIASISVGVKDDEY-DFVDQLAAEGLTPEYITIDIAHGH--------------------SDS---------VINMIQHIK 135 (326)
T ss_pred cEEEEEecCCHHHH-HHHHHHHhcCCCCCEEEEECCCCc--------------------hHH---------HHHHHHHHH
Confidence 4442 233332 333444456663345566665411 011 123499999
Q ss_pred HhcCCccchhh
Q psy7088 154 QATKLPIVCKD 164 (873)
Q Consensus 154 ~~t~lPl~lkg 164 (873)
+.|+.+++++|
T Consensus 136 ~~~p~~~vi~g 146 (326)
T PRK05458 136 KHLPETFVIAG 146 (326)
T ss_pred hhCCCCeEEEE
Confidence 99985555554
No 23
>PF05994 FragX_IP: Cytoplasmic Fragile-X interacting family; InterPro: IPR008081 Cytoplasmic fragile X mental retardation protein (FMRP) interacting protein belongs to a highly conserved but, as yet, functionally uncharacterised family. Absence of FMRP is responsible for pathologic manifestations in Fragile X Syndrome, the most frequent cause of inherited mental retardation []. FMRP is an RNA-binding protein that may have a role in local protein translation at neuronal dendrites and in dendritic spine maturation []. CYFIP1 and CYFIP2, which share a high level of sequence identity, have recently been identified as cytoplasmic FMRP interacting proteins []. CYFIP2 interacts with FMRP-related proteins FXR1P/2P, while CYFIP1 interacts exclusively with FMRP. The FMRP-CYFIP interaction involves the domain of FMRP that also mediates homo- and heteromerisation, suggesting competition between the various interaction partners. CYFIP1 also interacts with the small GTPase Rac1 implicated in development and maintenance of neuronal structures. CYFIP1/2 are both present in synaptosomal extracts []. PIR121 (121F-specific p53 inducible RNA) is another functionally uncharacterised member of this family. The PIR121 gene maps to human chromosome 5q34, a region frequently translocated in acute myeloid leukaemia but not known to be amplified or deleted in solid tumours. Interaction between PIR121 and FMRP has been demonstrated, and hence PIR121 has also been termed CYFIP2 (Cytoplasmic FMRP Interacting Protein 2) [, ]. Shyc (Selective HYbridizing Clone) is a cytoplasmic protein of unknown function, expressed in the developing and embryonic nervous system. The protein has also been designated CYFIP1 due to the high sequence identity (98.7%) to its human orthologue. The CYFIP orthologues in Caenorhabditis elegans and Drosophila melanogaster (Fruit fly) share about 51% and 67% sequence identity with the human proteins, respectively []. The high level of conservation manifest throughout the entire CYFIP sequence between various orthologues suggests a number of functionally/structurally important domains. ; PDB: 3P8C_A.
Probab=95.55 E-value=0.0033 Score=77.45 Aligned_cols=139 Identities=33% Similarity=0.498 Sum_probs=89.4
Q ss_pred chhHHHHHHHhhcCcCcccccCCCcch-------------H-------------------H------------HHHHHhh
Q psy7088 415 GRITLHIFWELNYDFLPNYCYNGATNR-------------I-------------------T------------LHIFWEL 450 (873)
Q Consensus 415 ~~i~~~~~~e~~~d~~~~y~~~~~~~r-------------i-------------------t------------~~vf~el 450 (873)
|||+.||+||+++||+|+||+|..|-| . + ..|.+.|
T Consensus 450 gRI~~hv~~eL~~D~~PNy~yn~~T~R~~~~~~~~r~k~p~~~~~~~~Gsk~l~~a~~~i~~~~~~FvG~pH~~ai~rLL 529 (820)
T PF05994_consen 450 GRITLHVFWELNYDFLPNYCYNSSTQRMVFSEPVQREKPPKAQPSYLFGSKALNAAYQTILSLYRGFVGVPHFKAIVRLL 529 (820)
T ss_dssp -HHHHHHHHHHHHTHHHHEEEETTTTEGGG-------------GGGTTSSHHHHHHHHHHGGGGGS-B-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcccccCceeeCCCCCCCCCCCCCCCCCCCCCcccccCcHHHHHHHHHHHHHhCCccChHHHHHHHHHh
Confidence 699999999999999999999999999 1 0 3455555
Q ss_pred hcCCccccc------cccCCccccccccccccccccccCCCCCcccccccchhHHHHHHHHHhhcccccChHHHHHHHHH
Q psy7088 451 NYDFLPNYC------YNGATNRFIKCRGIMFTQQIHREKLPPMTHTYSWGSKQLNMAYYSIYGQYTGFVGAYHFRAMCRL 524 (873)
Q Consensus 451 ~~d~~pnyc------yn~~t~rFvr~~~~~~~~~~~r~~~p~~~~~~~~g~~~l~~a~~~~~~~~~~f~g~~H~~a~~rL 524 (873)
.|+-+|--. ..+.-++||+.. .......+|- |+ +-+|+ ..+|+.+.+.|+.|+--|.++.++..
T Consensus 530 g~~~la~li~ell~~i~~~~~~~V~~l-~~~mPk~~~l--P~----~dygs---~g~~~~y~~~l~~~~~y~dLkevfq~ 599 (820)
T PF05994_consen 530 GYRGLAVLIEELLKLIQNKIEPYVKAL-MEAMPKSCKL--PP----FDYGS---AGVYDYYEAQLKDIIQYPDLKEVFQA 599 (820)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHH-HHHS-SB-----------GGG-H---HHHHHHHHHHTHHHHS-TTTTTHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHH-HHhCCccccC--CC----ccCCC---HHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 555554333 333445566554 2222333342 33 34464 46788899999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccccCCCCC
Q psy7088 525 LGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRY 569 (873)
Q Consensus 525 lg~~~i~~~i~ell~~~~~~i~~~~~~yv~~l~~~mPk~~kLP~~ 569 (873)
+-.-|-+++.-.+|+.+=... -+..++.+.|-.=-.|+.
T Consensus 600 frEiGN~i~f~~lLd~al~q~------e~~~~~~aapf~~~~p~~ 638 (820)
T PF05994_consen 600 FREIGNAIVFCLLLDQALSQE------EVCDLLQAAPFQGIIPRP 638 (820)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHGGGGT-----
T ss_pred HHHHHHHHHHHHHHHHHHhHH------HHHHHHHHhhhcCCCCCc
Confidence 999999999999998654322 234556777855444443
No 24
>PF09735 Nckap1: Membrane-associated apoptosis protein; InterPro: IPR019137 Nck-associated protein 1 is part of lamellipodial complex that controls Rac-dependent actin remodeling. It associates preferentially with the first SH3 domain of Nck and is a component of the WAVE2 complex composed of ABI1, CYFIP1/SRA1, NCKAP1/NAP1 and WASF2/WAVE2. It is also a component of the WAVE1 complex composed of ABI2, CYFIP2, C3orf10/HSPC300, NCKAP1 and WASF1/WAVE1. CYFIP2 binds to activated RAC1 which causes the complex to dissociate, releasing activated WASF1. The complex can also be activated by NCK1. Expression of this protein was found to be markedly reduced in patients with Alzheimer's disease [].; PDB: 3P8C_B.
Probab=94.32 E-value=1.6 Score=56.35 Aligned_cols=223 Identities=17% Similarity=0.255 Sum_probs=132.6
Q ss_pred ccceecccceehhHHHHHHHHHHHHHHHHHHHHh-hhcCCceeehhhhhHHHHHHHHHHHhhhcccCCcHHHHHHHhccc
Q psy7088 331 RHVQLLGRSIDLNKLITQRINADMHKSLDLAISK-FEHGDITGVVELEGLLAVNRLCHKLLSKLLGLDDYDAMLHEANHN 409 (873)
Q Consensus 331 ~~v~lLGr~idl~~li~qr~n~~~~~~l~~~i~r-fe~~~l~~ivel~~ll~i~r~tH~lL~~~l~Ld~F~~~l~e~n~~ 409 (873)
..|++..-.+..+.-+.|++-..|.+.|-..+.- -+++++.-=-|++..+..---.=+.+..++.+| +-+-.|+.
T Consensus 689 ~~I~V~dh~f~PrEyL~~~Le~~f~~~l~~~~~~~~~~~~i~RPS~ll~~l~a~m~vlq~le~~v~iD----vt~~~~~v 764 (1116)
T PF09735_consen 689 PSIVVFDHVFVPREYLREHLENRFRRALVSMVMYNPDDQEIARPSELLSSLRAYMSVLQSLENYVSID----VTRLFRNV 764 (1116)
T ss_dssp S-EEETTEEE-HHHHHHHHHHHHHHHHHHHHT--BTTTTB---HHHHHHHHHHHHHHHHHGGGTSS------HHHHHHHH
T ss_pred CCeEEEeeEeeHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHH
Confidence 6788999999999999999999999998887752 235666655566665554444446666677777 43333322
Q ss_pred CC------Ccc--chhHHH-HHHHhhcCcCcccccCCCcchHHHHHHHhhhcCCccccccccCCcccccccccccccccc
Q psy7088 410 VL------APY--GRITLH-IFWELNYDFLPNYCYNGATNRITLHIFWELNYDFLPNYCYNGATNRFIKCRGIMFTQQIH 480 (873)
Q Consensus 410 ~~------s~~--~~i~~~-~~~e~~~d~~~~y~~~~~~~rit~~vf~el~~d~~pnycyn~~t~rFvr~~~~~~~~~~~ 480 (873)
++ ..+ ++++.. .=|.+. -+.+-.+ -++.+|...-+-||..++.
T Consensus 765 LLqqtq~~d~~g~~ti~~~yt~WYle------------------~llr~~s---~~~ivfSp~~~~FvS~~~~------- 816 (1116)
T PF09735_consen 765 LLQQTQPVDSHGEKTITTLYTNWYLE------------------NLLRDAS---NGGIVFSPSRKCFVSSRPE------- 816 (1116)
T ss_dssp HHHTTSSB-TTS-B-HHHHHHHHHHH------------------THHHHHH---TTSEEEETTTTEEEE-SSS-------
T ss_pred HHHhcCCcccCCcccHHHHHHHHHHH------------------HHHHhcc---CCcEEeecHHHhhhCCCCc-------
Confidence 11 111 233332 111111 1222222 4666788888888866521
Q ss_pred ccCCCCCcccccccchhHHHHHHHHHhhcccccChHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc
Q psy7088 481 REKLPPMTHTYSWGSKQLNMAYYSIYGQYTGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAM 560 (873)
Q Consensus 481 r~~~p~~~~~~~~g~~~l~~a~~~~~~~~~~f~g~~H~~a~~rLlg~~~i~~~i~ell~~~~~~i~~~~~~yv~~l~~~m 560 (873)
-.+..+ +.| -....++|+++|+|+-|+..+=+.|+.++-+.++. |+..|..-++.+
T Consensus 817 ---~~~f~a----------e~y----------tD~~ELrAL~~LiGpyGvk~l~~~L~~~va~~v~e-lkk~v~~N~d~L 872 (1116)
T PF09735_consen 817 ---QGPFNA----------EEY----------TDLNELRALVELIGPYGVKFLDENLMWHVASQVNE-LKKLVRQNRDVL 872 (1116)
T ss_dssp ------S-T----------HHH----------HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTHHHH
T ss_pred ---cCCcCh----------HHc----------CCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHH
Confidence 001111 233 34457899999999999999999999999998865 665554433322
Q ss_pred ccccCCCCCCCCChhHHHHHHHhccccccCchhhHHHHHHHHhhhhHHHHHHHHHHhhch
Q psy7088 561 PKQCKLPRYDYGSPGVLGYYHAQLNDIVQYPDAKTELFHNFRELGNTILFCLLMEQALSQ 620 (873)
Q Consensus 561 Pk~~kLP~~dyGs~G~l~yy~~~L~~~~~Y~dLk~evfq~fREiGN~i~f~~lLd~aL~q 620 (873)
= .-+..|..++-+.--..+|++ -..|++-+..||+++-|=.+|-+||+.
T Consensus 873 ~----~l~~~~~~~~~~~~~~~~l~~-------~d~vl~r~i~iG~iL~FR~ll~eAl~~ 921 (1116)
T PF09735_consen 873 E----QLRSNFDKPEKMEELLKQLTD-------LDNVLQRMIIIGVILSFRQLLQEALRD 921 (1116)
T ss_dssp H----HHHH-TT-HHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----HHHHhcCCHHHHHHHHHhhcc-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112455666666633333432 348999999999999999999999975
No 25
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.12 E-value=0.14 Score=58.46 Aligned_cols=90 Identities=16% Similarity=0.181 Sum_probs=61.0
Q ss_pred CCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCC----CCCCHHHHHhcC-C-CC----
Q psy7088 3 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLM----STTSLEEVRAQN-P-ST---- 72 (873)
Q Consensus 3 dVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~----Ss~SlEeIaaa~-p-~g---- 72 (873)
+.+++|+++.+-+..+..||+.||+... ++..+|++.+++|-.-++... ...+.|++.+.. . ..
T Consensus 31 ~~~dvdls~~~~~~~i~~Piv~a~M~gV------t~~~la~avs~~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~ 104 (368)
T PRK08649 31 DPEDVSTSWQIDAYRFEIPIIASPMDAV------VSPETAIELGKLGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEAT 104 (368)
T ss_pred CHHHceeeeeecceeccCcEeccCCccc------CCHHHHHHHHhCCCceEEeeccccccCCCHHHHHHHHHhcCcHHHH
Confidence 3467899998988999999999998543 567899999999987666622 234567665421 0 00
Q ss_pred ceEEEEE-eeCCHHHHHHHHHHHHHcC
Q psy7088 73 TLWLQMY-IFKDRALSLQMVQRAERSG 98 (873)
Q Consensus 73 ~~WFQLY-~~~Dr~~~~~LL~RAe~AG 98 (873)
...-++| .|.|.+.+.++++..+++|
T Consensus 105 ~~~~~~~~~P~~p~l~~~iv~~~~~~~ 131 (368)
T PRK08649 105 RLMQELYAEPIKPELITERIAEIRDAG 131 (368)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhCe
Confidence 0000112 2567888888888888875
No 26
>PLN03099 PIR Protein PIR; Provisional
Probab=93.99 E-value=0.028 Score=70.72 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=42.6
Q ss_pred cccccccccccceecc------hhhcccCCCcccccccHHHHHHHHHHHHHhhhHHHHHHhh
Q psy7088 773 GQQRRFEALDFCYHIL------RVQRVDGRDENVKGIHLKRMVDRIRRFQVVNSQIFATLNK 828 (873)
Q Consensus 773 gQq~rFe~lDF~yhil------~V~~~d~~~~~~~g~~l~~~~~~~~~~~~lN~~iFs~L~~ 828 (873)
.-+|.|.++.|.|.+- .++++-|..-.+.|+.+--++...+||..|+ -...+|+.
T Consensus 1086 eFhRlwSalQfv~c~p~~~~e~~~ee~fGDgl~WaGctii~lLgQq~rFe~lD-F~yhiL~V 1146 (1232)
T PLN03099 1086 DFYRIYSGLQYVYLEEISAEGSAFHERLGDSVAWGGCTIVYLLGQQLRFELLD-FIYHVLSV 1146 (1232)
T ss_pred HHHHHHHhhhheeeccCCCCcccHHHHhccccccccchHHhhhcchhhhhHHH-HHHHHHHH
Confidence 3568888888888775 5666777777899999999999999999987 44445554
No 27
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=92.19 E-value=0.4 Score=54.82 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=82.2
Q ss_pred CCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCC----CCCCHHHHH----hcCCC--
Q psy7088 2 RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLM----STTSLEEVR----AQNPS-- 71 (873)
Q Consensus 2 rdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~----Ss~SlEeIa----aa~p~-- 71 (873)
+|.+++||+..+=+.++..||+.||++.. .+..++.+++++|-+-++|.- .....+.+. ...++
T Consensus 27 ~~~~~v~~~~~i~~~~l~~PivlAPMagV------td~~fr~~~~~~Galgvvsaegl~~~~~~~~~~~~QI~g~~~~~~ 100 (369)
T TIGR01304 27 RSSKDVDTAWQIDAYRFELPFIAHPMDAL------VSPEFAIELGELGGLGVLNLEGLWGRHEDPDPAIAKIAEAYEEGD 100 (369)
T ss_pred CChhhccceeEEcceecCCceeecCCCcc------cCHHHHHHHHHcCCcccccchHHHhcCCCHHHHHHHHhhcCCChH
Confidence 34556788887767788999999998854 467899999999997777741 122233332 11011
Q ss_pred ---CceEE-EEE-eeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccc-ccccccc-Cc-chhhhhhc-cCC
Q psy7088 72 ---TTLWL-QMY-IFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRD-ISAEECS-SG-LTDYVANQ-FDD 142 (873)
Q Consensus 72 ---g~~WF-QLY-~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~-~~~~~~~-~~-~~~~v~~~-~d~ 142 (873)
..... ++| -+.|.+++.++++.++++| |||=......... .+.. +...... -. .+..+... ...
T Consensus 101 ~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~-----VtvkiRl~~~~~~--e~a~~l~eAGad~I~ihgrt~~q~~~sg 173 (369)
T TIGR01304 101 QAAATRLLQELHAAPLKPELLGERIAEVRDSG-----VITAVRVSPQNAR--EIAPIVVKAGADLLVIQGTLVSAEHVST 173 (369)
T ss_pred HHHHHHHHHHcCCCccChHHHHHHHHHHHhcc-----eEEEEecCCcCHH--HHHHHHHHCCCCEEEEeccchhhhccCC
Confidence 00011 122 2357889999999999987 3332221110000 0000 0000000 00 00011111 123
Q ss_pred CCCHHHHHHHHHhcCCccchhh
Q psy7088 143 SVDWDDVRSLVQATKLPIVCKD 164 (873)
Q Consensus 143 sltWeDL~wLR~~t~lPl~lkg 164 (873)
.-+|++++++++.++.|++..+
T Consensus 174 ~~~p~~l~~~i~~~~IPVI~G~ 195 (369)
T TIGR01304 174 SGEPLNLKEFIGELDVPVIAGG 195 (369)
T ss_pred CCCHHHHHHHHHHCCCCEEEeC
Confidence 3479999999999999998734
No 28
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=91.84 E-value=0.79 Score=50.34 Aligned_cols=131 Identities=14% Similarity=0.154 Sum_probs=78.4
Q ss_pred CCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceec-CCCC--------------------------CC
Q psy7088 8 DSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL-SLMS--------------------------TT 60 (873)
Q Consensus 8 DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~L-St~S--------------------------s~ 60 (873)
|++|+++|.++.-||++|.-.. ..++| .++++.+.|.-+++ .|.. +.
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~----~~~~~--~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTF----GFGGE--YARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCC----CCCHH--HHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 7899999999999999985322 22333 44444444444433 2221 22
Q ss_pred CHHH----HHhcC--CCCceEEEEEeeCCHHHHHHHHHHHHHcC-CcEEEEeeccCccCcccccccccccccccccCcch
Q psy7088 61 SLEE----VRAQN--PSTTLWLQMYIFKDRALSLQMVQRAERSG-YSAIVITMDTAVLGSRYHISKFRDISAEECSSGLT 133 (873)
Q Consensus 61 SlEe----Iaaa~--p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG-~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~ 133 (873)
.++. +.... -+.+...|+-- .+.+...+..++++++| +.+|-+.+=+|.... + +
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~g-~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~-----------------g-g 135 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVAG-STEEEYAEVAEKLSKAPNVDAIELNISCPNVKH-----------------G-G 135 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEecc-CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCC-----------------C-c
Confidence 2332 22211 13455666632 35566667788888888 888888776664310 0 0
Q ss_pred hhhhhccCCCCCHHHHHHHHHhcCCccchhhh
Q psy7088 134 DYVANQFDDSVDWDDVRSLVQATKLPIVCKDS 165 (873)
Q Consensus 134 ~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgt 165 (873)
.. -..++.+.++-++++|+.++.|+.+|-.
T Consensus 136 ~~--~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 136 MA--FGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred cc--cccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 00 0113446788999999999999999865
No 29
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=91.59 E-value=1.5 Score=48.40 Aligned_cols=78 Identities=14% Similarity=0.108 Sum_probs=52.0
Q ss_pred CCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHH
Q psy7088 71 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVR 150 (873)
Q Consensus 71 ~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~ 150 (873)
+.+...|+.-..+.+...+.+++++++|+.+|-+.+.+|..-.+.. + +..+ ..++...=+-++
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~---~------------G~~l--~~~~~~~~~iv~ 161 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERG---M------------GAAV--GQDPELVEEICR 161 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCC---C------------chhh--ccCHHHHHHHHH
Confidence 4567788864447788888889999899999999999998621110 0 0000 012222234578
Q ss_pred HHHHhcCCccchhhh
Q psy7088 151 SLVQATKLPIVCKDS 165 (873)
Q Consensus 151 wLR~~t~lPl~lkgt 165 (873)
++|+.++.|+.+|-.
T Consensus 162 ~v~~~~~~Pv~vKl~ 176 (299)
T cd02940 162 WVREAVKIPVIAKLT 176 (299)
T ss_pred HHHHhcCCCeEEECC
Confidence 889999999999944
No 30
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.36 E-value=1.3 Score=48.37 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=51.0
Q ss_pred CCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHH
Q psy7088 71 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVR 150 (873)
Q Consensus 71 ~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~ 150 (873)
+.+...|+.- .+.+...+..++++++|+++|-+++-+|....|-. .+ . .++.+..+-++
T Consensus 89 ~~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~--~~---------------~---~~~~~~~eiv~ 147 (296)
T cd04740 89 GTPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNVKGGGM--AF---------------G---TDPEAVAEIVK 147 (296)
T ss_pred CCcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcc--cc---------------c---CCHHHHHHHHH
Confidence 3567778753 45666778889999999999999988887532210 00 0 12334567799
Q ss_pred HHHHhcCCccchh
Q psy7088 151 SLVQATKLPIVCK 163 (873)
Q Consensus 151 wLR~~t~lPl~lk 163 (873)
++|+.++.|+.+|
T Consensus 148 ~vr~~~~~Pv~vK 160 (296)
T cd04740 148 AVKKATDVPVIVK 160 (296)
T ss_pred HHHhccCCCEEEE
Confidence 9999999999998
No 31
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=91.19 E-value=1.2 Score=49.89 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=43.4
Q ss_pred CceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHH
Q psy7088 72 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRS 151 (873)
Q Consensus 72 g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~w 151 (873)
.+.+.|+.- .+.+...+.+++++++|+.+|.+.+-+|.. +. ... +. . . +..-++-+++
T Consensus 100 ~pvi~si~g-~~~~~~~~~a~~~~~~gad~iElN~s~~~~--~~---~~~---------g~-~-----~-~~~~~eiv~~ 157 (325)
T cd04739 100 IPVIASLNG-VSAGGWVDYARQIEEAGADALELNIYALPT--DP---DIS---------GA-E-----V-EQRYLDILRA 157 (325)
T ss_pred CeEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEeCCCCCC--CC---Ccc---------cc-h-----H-HHHHHHHHHH
Confidence 456666532 345555677777777788887777765311 00 000 00 0 0 1123567899
Q ss_pred HHHhcCCccchhhh
Q psy7088 152 LVQATKLPIVCKDS 165 (873)
Q Consensus 152 LR~~t~lPl~lkgt 165 (873)
+|+.++.|+.+|-+
T Consensus 158 v~~~~~iPv~vKl~ 171 (325)
T cd04739 158 VKSAVTIPVAVKLS 171 (325)
T ss_pred HHhccCCCEEEEcC
Confidence 99999999999954
No 32
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=89.73 E-value=1.3 Score=48.53 Aligned_cols=130 Identities=16% Similarity=0.204 Sum_probs=79.2
Q ss_pred CcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecC-C--------------------------CCCCC
Q psy7088 9 SGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILS-L--------------------------MSTTS 61 (873)
Q Consensus 9 tsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LS-t--------------------------~Ss~S 61 (873)
++|+++|.++..||++||.-. ...+|. .|.+.+.|.-+++. | +.+..
T Consensus 1 l~~~~~g~~l~npi~~aag~~----~~~~~~--~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIM----GSGVES--LRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCC----CCCHHH--HHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 478999999999999999322 122232 22333345554444 1 12223
Q ss_pred HHH----HHhcC--CCCceEEEEEeeCCHHHHHHHHHHHHHcC--CcEEEEeeccCccCcccccccccccccccccCcch
Q psy7088 62 LEE----VRAQN--PSTTLWLQMYIFKDRALSLQMVQRAERSG--YSAIVITMDTAVLGSRYHISKFRDISAEECSSGLT 133 (873)
Q Consensus 62 lEe----Iaaa~--p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG--~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~ 133 (873)
++. +.... -+.+...|+.- .+.+...+..++++++| +.+|-+.+=+|....|-.
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g-~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~----------------- 136 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYG-SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGI----------------- 136 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeec-CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCcc-----------------
Confidence 333 22211 12367888853 45666777888888764 888888888886531110
Q ss_pred hhhhhccCCCCCHHHHHHHHHhcCCccchhhh
Q psy7088 134 DYVANQFDDSVDWDDVRSLVQATKLPIVCKDS 165 (873)
Q Consensus 134 ~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgt 165 (873)
.+ ..++.+.++-++++|+.++.|+.+|-.
T Consensus 137 ~l---~~~~~~~~eiv~~vr~~~~~pv~vKi~ 165 (300)
T TIGR01037 137 AI---GQDPELSADVVKAVKDKTDVPVFAKLS 165 (300)
T ss_pred cc---ccCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 00 012335578899999999999999953
No 33
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=89.57 E-value=0.66 Score=52.02 Aligned_cols=94 Identities=17% Similarity=0.097 Sum_probs=62.0
Q ss_pred CCCCCCCcceEcC-cccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhc---CCCCceEEEE
Q psy7088 3 NVCDRDSGLTVLG-TRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ---NPSTTLWLQM 78 (873)
Q Consensus 3 dVs~~DtsTtIfG-~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa---~p~g~~WFQL 78 (873)
+.+++|++|.|.+ ..+..||+.||+... .|..+|.|.+++|-.-++.. ..+.|+..+. ..+.....+.
T Consensus 17 ~~~~vdl~t~l~~~~~l~~Piv~apM~~v------t~~~ma~ava~~GglGvi~~--~~~~~~~~~~i~~vk~~l~v~~~ 88 (325)
T cd00381 17 LPSEVDLSTKLTKNITLNIPLVSAPMDTV------TESEMAIAMARLGGIGVIHR--NMSIEEQAEEVRKVKGRLLVGAA 88 (325)
T ss_pred CHHHceeeEEecCccccCCCEEecCCCcC------CcHHHHHHHHHCCCEEEEeC--CCCHHHHHHHHHHhccCceEEEe
Confidence 3467899999998 889999999998754 46788888888887666643 3455666432 1222222233
Q ss_pred EeeCCHHHHHHHHHHHHHcCCcEEEEee
Q psy7088 79 YIFKDRALSLQMVQRAERSGYSAIVITM 106 (873)
Q Consensus 79 Y~~~Dr~~~~~LL~RAe~AG~kALvvTV 106 (873)
+..+ ....+.++.+.++|++.|+++.
T Consensus 89 -~~~~-~~~~~~~~~l~eagv~~I~vd~ 114 (325)
T cd00381 89 -VGTR-EDDKERAEALVEAGVDVIVIDS 114 (325)
T ss_pred -cCCC-hhHHHHHHHHHhcCCCEEEEEC
Confidence 2222 2345667777778998887654
No 34
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=88.65 E-value=2.4 Score=48.98 Aligned_cols=138 Identities=15% Similarity=0.109 Sum_probs=77.4
Q ss_pred CCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecC-CCC-------------------------
Q psy7088 5 CDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILS-LMS------------------------- 58 (873)
Q Consensus 5 s~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LS-t~S------------------------- 58 (873)
+.+|++|++.|.++.-||++|--.. ..++..+.++ .++|.-.++. |.+
T Consensus 7 ~~~dLst~~~Gl~l~NP~i~ASgp~-----t~~~e~~~~~-~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~ 80 (385)
T PLN02495 7 SEPDLSVTVNGLKMPNPFVIGSGPP-----GTNYTVMKRA-FDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAK 80 (385)
T ss_pred CCCcceEEECCEEcCCCcEeCCccC-----CCCHHHHHHH-HhcCCeEEEeccccCCccccCCCCCeEEecCcccccccc
Confidence 5689999999999999999986443 2233333332 2234433331 110
Q ss_pred -------C------CCH----HHHHhc---CCCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccc
Q psy7088 59 -------T------TSL----EEVRAQ---NPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHIS 118 (873)
Q Consensus 59 -------s------~Sl----EeIaaa---~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~ 118 (873)
+ .++ +++... .|+-+.+--+.-..+.+.-.+++++++++|+.+|-+.+=+|-.. -+++
T Consensus 81 ~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~-~~r~- 158 (385)
T PLN02495 81 GRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGM-PERK- 158 (385)
T ss_pred cccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-CcCc-
Confidence 0 022 233221 23334444443335677778888888888888888888887542 1110
Q ss_pred cccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhhh
Q psy7088 119 KFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDS 165 (873)
Q Consensus 119 ~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgt 165 (873)
.+..++ .++...-+=++|+|+.++.|+.+|=+
T Consensus 159 -------------~g~~~g--q~~e~~~~i~~~Vk~~~~iPv~vKLs 190 (385)
T PLN02495 159 -------------MGAAVG--QDCDLLEEVCGWINAKATVPVWAKMT 190 (385)
T ss_pred -------------cchhhc--cCHHHHHHHHHHHHHhhcCceEEEeC
Confidence 000000 11222223358899999999999844
No 35
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=88.07 E-value=1.3 Score=49.29 Aligned_cols=127 Identities=18% Similarity=0.149 Sum_probs=80.1
Q ss_pred CcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCC-CC-------CCCHHHHHhc-CCCCceEEEEEeeCCHH
Q psy7088 15 GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSL-MS-------TTSLEEVRAQ-NPSTTLWLQMYIFKDRA 85 (873)
Q Consensus 15 G~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt-~S-------s~SlEeIaaa-~p~g~~WFQLY~~~Dr~ 85 (873)
|..+.-|+++||+... .+.+..+.|++.|.-++.+- .+ .....+.... ..+.+.-.|+. -.|.+
T Consensus 3 ~~~~~~~l~lAPm~~~------t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~~~ 75 (319)
T TIGR00737 3 NIQLKSRVVLAPMAGV------TDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSDPD 75 (319)
T ss_pred CccCCCCEEecCCCCC------CcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCCHH
Confidence 4578899999998754 46667777777775544431 11 1122222222 23456778884 56777
Q ss_pred HHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhh
Q psy7088 86 LSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKD 164 (873)
Q Consensus 86 ~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkg 164 (873)
...+..++|+++||++|=+..-+|. .+|.+. +.+..+ ..++.+--+-++.+|+.++.|+.+|-
T Consensus 76 ~~~~aa~~~~~~G~d~IelN~gcP~-~~~~~~-------------~~Gs~l--~~~~~~~~ei~~~vr~~~~~pv~vKi 138 (319)
T TIGR00737 76 TMAEAAKINEELGADIIDINMGCPV-PKITKK-------------GAGSAL--LRDPDLIGKIVKAVVDAVDIPVTVKI 138 (319)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCH-HHhcCC-------------CccchH--hCCHHHHHHHHHHHHhhcCCCEEEEE
Confidence 8888899999999999999888873 333211 000000 01233344668889999999998884
No 36
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=87.89 E-value=1.1 Score=50.63 Aligned_cols=125 Identities=13% Similarity=0.025 Sum_probs=77.1
Q ss_pred CCCCCcceEcCc-----ccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHH----hcCCCCceE
Q psy7088 5 CDRDSGLTVLGT-----RYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVR----AQNPSTTLW 75 (873)
Q Consensus 5 s~~DtsTtIfG~-----~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIa----aa~p~g~~W 75 (873)
+++|+++++-.+ .+..||+-|.+- . =+|..+|.+-++.|-..++== ..++|+-+ ...++...
T Consensus 26 ~evdl~~~~~~~~~~~~~~~iPii~AnMd--t----v~~~~mA~~la~~g~~~~iHk--~~~~e~~~~~v~~~~~~~~~- 96 (343)
T TIGR01305 26 ADVELERTFTFRNSKQTYSGVPIIAANMD--T----VGTFEMAAALSQHSIFTAIHK--HYSVDEWKAFATNSSPDCLQ- 96 (343)
T ss_pred HHceeeEEEccccCCceeeCCceEecCCC--c----ccCHHHHHHHHHCCCeEEEee--CCCHHHHHHHHHhhcccccc-
Confidence 567999988644 689999877643 2 278999999999999988843 34666633 22222111
Q ss_pred EEEEee-CCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHHHHH
Q psy7088 76 LQMYIF-KDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQ 154 (873)
Q Consensus 76 FQLY~~-~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~ 154 (873)
++.+. .-++...+.++...++|-.+=+++||++.. ... .--++|+|||+
T Consensus 97 -~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhG--------------------hs~---------~~i~~ik~ir~ 146 (343)
T TIGR01305 97 -NVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANG--------------------YSE---------HFVEFVKLVRE 146 (343)
T ss_pred -eEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCC--------------------cHH---------HHHHHHHHHHh
Confidence 22222 222223344555555653444556676432 111 12478999999
Q ss_pred hcCCccchhh-hhhh
Q psy7088 155 ATKLPIVCKD-SLQQ 168 (873)
Q Consensus 155 ~t~lPl~lkg-tl~~ 168 (873)
.|+.+.+++| +++.
T Consensus 147 ~~p~~~viaGNV~T~ 161 (343)
T TIGR01305 147 AFPEHTIMAGNVVTG 161 (343)
T ss_pred hCCCCeEEEecccCH
Confidence 9999999999 5544
No 37
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=85.02 E-value=5.3 Score=46.18 Aligned_cols=77 Identities=13% Similarity=0.093 Sum_probs=49.0
Q ss_pred CCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCc-cCcccccccccccccccccCcchhhhhhccCCCCCHHHH
Q psy7088 71 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAV-LGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDV 149 (873)
Q Consensus 71 ~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv-~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL 149 (873)
+.+...|+.-..+.+...+..+.++++|+++|-+.+=+|. .+.|..- ..+ ..++...=+-+
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g----------------~~~--~~~~~~~~~i~ 160 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMG----------------SAV--GQVPELVEMYT 160 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCc----------------ccc--cCCHHHHHHHH
Confidence 4456677754446777778888888899999999998887 3222110 000 01122223447
Q ss_pred HHHHHhcCCccchhhh
Q psy7088 150 RSLVQATKLPIVCKDS 165 (873)
Q Consensus 150 ~wLR~~t~lPl~lkgt 165 (873)
+++++.++.|+.+|=.
T Consensus 161 ~~v~~~~~~Pv~vKl~ 176 (420)
T PRK08318 161 RWVKRGSRLPVIVKLT 176 (420)
T ss_pred HHHHhccCCcEEEEcC
Confidence 7888888999999843
No 38
>PRK02866 cyanate hydratase; Validated
Probab=83.73 E-value=0.76 Score=46.33 Aligned_cols=70 Identities=23% Similarity=0.363 Sum_probs=49.5
Q ss_pred HHHHHHHhhcCCCCccCCCCCCCeeeeccccchHHHHHHhHhhhcccCCCCcchhHHhhcCcccchhHHHHHHhcccccc
Q psy7088 699 VVLNRLRGFLDDPIWVGPPPTNGVINIDECTEFHRLWSALQFVYCIPVGDTEFTVEELFGEGLNWAGCTMIVLLGQQRRF 778 (873)
Q Consensus 699 ~~L~ri~~~L~~~~W~g~~p~ngv~~id~~~eF~RlWSaLQF~~C~p~~~~~~~~~e~fGDGl~WaGctII~LLgQq~rF 778 (873)
.+...+..+=.+..|...+|..=+ -||+|-++| ||..+. .-.++|.||||.+
T Consensus 62 ~~~~~l~~~P~rg~~~~~~ptdP~--------iYR~yE~v~-vYG~~~---K~~i~E~FGDGIM---------------- 113 (147)
T PRK02866 62 DAVALLQEVPYRGSLPPAVPTDPL--------IYRFYEMVQ-VYGTTL---KALIHEKFGDGIM---------------- 113 (147)
T ss_pred HHHHHHhcCCcCCCCCCCCCCCcH--------HHHHHHHHH-HhhHHH---HHHHHHHhCCcee----------------
Confidence 333333333334567777775554 499999999 665443 2368899999998
Q ss_pred cccccceecchhhcccCC
Q psy7088 779 EALDFCYHILRVQRVDGR 796 (873)
Q Consensus 779 e~lDF~yhil~V~~~d~~ 796 (873)
.+.||+-.|-|+..-+|.
T Consensus 114 SAIdf~~~v~k~~dp~Gd 131 (147)
T PRK02866 114 SAIDFKLDVDKVEDPKGD 131 (147)
T ss_pred eeeeeceeeeeccCCCCC
Confidence 678999999999877764
No 39
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=83.37 E-value=4.2 Score=47.24 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=41.4
Q ss_pred CCCCCcceEc-CcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHh
Q psy7088 5 CDRDSGLTVL-GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRA 67 (873)
Q Consensus 5 s~~DtsTtIf-G~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaa 67 (873)
+++|++|.+- ...+..||+-||++.. .+..+|.|.+++|-.-++. ...++|++.+
T Consensus 27 ~~vdl~t~lt~~l~l~iPIvsApMd~V------t~~~lA~AvA~aGGlGvI~--~~~~~e~l~~ 82 (404)
T PRK06843 27 SEVSLKTQLTKNISLNIPFLSSAMDTV------TESQMAIAIAKEGGIGIIH--KNMSIEAQRK 82 (404)
T ss_pred HhccccchhhhccCCCCCEecCCCCCC------CCHHHHHHHHHCCCEEEec--CCCCHHHHHH
Confidence 4678888775 3467899999998643 3678888999998887886 3577888753
No 40
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=83.07 E-value=6.2 Score=44.28 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=43.9
Q ss_pred CceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHH
Q psy7088 72 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRS 151 (873)
Q Consensus 72 g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~w 151 (873)
.+..-|+.- .+.+...+.+++++++|+.+|-+.+-+|... . ... +. . .+...|+-+++
T Consensus 102 ~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~-~----~~~---------g~-~------~~~~~~eil~~ 159 (334)
T PRK07565 102 IPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTD-P----DIS---------GA-E------VEQRYLDILRA 159 (334)
T ss_pred CcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC-C----CCc---------cc-c------HHHHHHHHHHH
Confidence 456666643 3444556777778888888877777543221 0 000 00 0 01124788999
Q ss_pred HHHhcCCccchhhh
Q psy7088 152 LVQATKLPIVCKDS 165 (873)
Q Consensus 152 LR~~t~lPl~lkgt 165 (873)
+++.++.|+.+|-+
T Consensus 160 v~~~~~iPV~vKl~ 173 (334)
T PRK07565 160 VKSAVSIPVAVKLS 173 (334)
T ss_pred HHhccCCcEEEEeC
Confidence 99999999999944
No 41
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=81.79 E-value=7.8 Score=42.15 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=47.3
Q ss_pred CCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHH
Q psy7088 71 STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVR 150 (873)
Q Consensus 71 ~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~ 150 (873)
+.+...|+.- .+.+...+.+++++++|+++|-+++-+|..+... . + ..++...-+-++
T Consensus 98 ~~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~-~--~------------------~~~~~~~~eiv~ 155 (289)
T cd02810 98 GQPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVGGGR-Q--L------------------GQDPEAVANLLK 155 (289)
T ss_pred CCeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCc-c--c------------------ccCHHHHHHHHH
Confidence 4566667643 3667777889999999999999999988754211 0 0 001122234477
Q ss_pred HHHHhcCCccchh
Q psy7088 151 SLVQATKLPIVCK 163 (873)
Q Consensus 151 wLR~~t~lPl~lk 163 (873)
++|+.++.|+.+|
T Consensus 156 ~vr~~~~~pv~vK 168 (289)
T cd02810 156 AVKAAVDIPLLVK 168 (289)
T ss_pred HHHHccCCCEEEE
Confidence 8888888888887
No 42
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=80.65 E-value=1.1 Score=45.25 Aligned_cols=59 Identities=29% Similarity=0.439 Sum_probs=45.2
Q ss_pred CCCccCCCCCCCeeeeccccchHHHHHHhHhhhcccCCCCcchhHHhhcCcccchhHHHHHHhcccccccccccceecch
Q psy7088 710 DPIWVGPPPTNGVINIDECTEFHRLWSALQFVYCIPVGDTEFTVEELFGEGLNWAGCTMIVLLGQQRRFEALDFCYHILR 789 (873)
Q Consensus 710 ~~~W~g~~p~ngv~~id~~~eF~RlWSaLQF~~C~p~~~~~~~~~e~fGDGl~WaGctII~LLgQq~rFe~lDF~yhil~ 789 (873)
+..|...+|..=+ -||+|-++| ||..+. .-.++|-||||.+ .+.||+-.|-|
T Consensus 76 rg~~~~~~ptdP~--------iYR~yE~v~-vYG~~~---K~~i~E~FGDGIM----------------SAIdF~~~v~k 127 (150)
T TIGR00673 76 RGCIDPVIPTDPT--------MYRFYEMLQ-VYGTTL---KAVVHEKFGDGIM----------------SAIDFKLDVEK 127 (150)
T ss_pred CCCCCCCCCCCch--------HHHHHHHHH-HhhHHH---HHHHHHHhCccee----------------eeeeeceeeee
Confidence 3457777775544 499999999 665543 2368899999998 67899999999
Q ss_pred hhcccCC
Q psy7088 790 VQRVDGR 796 (873)
Q Consensus 790 V~~~d~~ 796 (873)
+..-+|.
T Consensus 128 ~~dp~Gd 134 (150)
T TIGR00673 128 VADPGGE 134 (150)
T ss_pred ecCCCCC
Confidence 9877663
No 43
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=80.17 E-value=3.9 Score=47.13 Aligned_cols=49 Identities=16% Similarity=0.122 Sum_probs=39.6
Q ss_pred cCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhc
Q psy7088 18 YRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ 68 (873)
Q Consensus 18 ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa 68 (873)
+..||++||+++..+ -.+.-.++|.||+.+|....++. +..+.|++...
T Consensus 76 i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Ge-gg~~~~~~~~~ 124 (392)
T cd02808 76 LDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGE-GGELPEEREGG 124 (392)
T ss_pred cccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecC-CCCCHHHHhhh
Confidence 478999999997765 56677999999999999998876 44678887643
No 44
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=76.15 E-value=18 Score=40.97 Aligned_cols=43 Identities=28% Similarity=0.462 Sum_probs=30.0
Q ss_pred CCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceec
Q psy7088 5 CDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL 54 (873)
Q Consensus 5 s~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~L 54 (873)
.+++++|+++|.++..||++|- |. ..+|| ..+...++|.-+++
T Consensus 45 ~~~~L~~~~~Gl~l~nPi~~As-G~----~~~~~--~~~~~~~~G~Gavv 87 (344)
T PRK05286 45 TDPRLPVTVMGLTFPNPVGLAA-GF----DKNGE--AIDALGALGFGFVE 87 (344)
T ss_pred CCCCCceEECCEECCCCCEECC-CC----CCChH--HHHHHHHcCCCEEE
Confidence 4678999999999999998854 42 24454 34446666665554
No 45
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=70.02 E-value=24 Score=39.64 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=29.0
Q ss_pred CCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceec
Q psy7088 4 VCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL 54 (873)
Q Consensus 4 Vs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~L 54 (873)
..++|++|+++|.++..||++|. | + ..++|. .+.+.++|.-+++
T Consensus 34 ~~~~~L~~~~~Gl~l~nPi~~As-G---~-~~~~~~--~~~~~~~G~Gavv 77 (327)
T cd04738 34 YDDPRLEVEVFGLTFPNPVGLAA-G---F-DKNAEA--IDALLALGFGFVE 77 (327)
T ss_pred CCCCCcceEECCEECCCCCEeCc-C---C-CCCHHH--HHHHHHCCCcEEE
Confidence 45789999999999999998854 3 2 244543 3333355555544
No 46
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=65.50 E-value=47 Score=37.18 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=18.0
Q ss_pred CCcceEcCcccCCcceechh
Q psy7088 8 DSGLTVLGTRYRCPVGIAPS 27 (873)
Q Consensus 8 DtsTtIfG~~ls~PI~IAPt 27 (873)
|++|+++|.++.-||++|--
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG 20 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAG 20 (310)
T ss_pred CCceEECCEECCCCCEeCCC
Confidence 68999999999999999863
No 47
>COG1513 CynS Cyanate lyase [Inorganic ion transport and metabolism]
Probab=62.34 E-value=4.3 Score=40.29 Aligned_cols=49 Identities=29% Similarity=0.526 Sum_probs=38.7
Q ss_pred cchHHHHHHhHhhhcccCCCCcchhHHhhcCcccchhHHHHHHhcccccccccccceecchhhcccCCC
Q psy7088 729 TEFHRLWSALQFVYCIPVGDTEFTVEELFGEGLNWAGCTMIVLLGQQRRFEALDFCYHILRVQRVDGRD 797 (873)
Q Consensus 729 ~eF~RlWSaLQF~~C~p~~~~~~~~~e~fGDGl~WaGctII~LLgQq~rFe~lDF~yhil~V~~~d~~~ 797 (873)
---||.|..+| ||..+.- -.++|.||||.+ .+.||+--|-+|..-+|.+
T Consensus 87 P~iYRfYE~~q-vYG~~lK---~lihE~FGDGIm----------------SAIdf~ld~ek~~dpeG~~ 135 (151)
T COG1513 87 PLIYRFYEMLQ-VYGTTLK---ALIHEKFGDGIM----------------SAIDFKLDVEKVADPEGGE 135 (151)
T ss_pred hHHHHHHHHHH-HHchhHH---HHHHHHhccchh----------------hheeeeeeeeeccCCCCCc
Confidence 34699999999 7776643 368899999987 5689999999998766644
No 48
>cd00559 Cyanase_C Cyanase C-terminal domain. Cyanase (Cyanate lyase) is responsible for the hydrolysis of cyanate. It catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. This allows organisms that possess the enzyme to overcome the toxicity of environmental cyanate and to use cyanate as a source of nitrogen for growth. This enzyme is a homodecamer, formed by five dimers. Each monomer is composed of two domains, an N-terminal helix-turn-helix and this structurally unique C-terminal domain.
Probab=59.32 E-value=3.1 Score=36.86 Aligned_cols=45 Identities=29% Similarity=0.551 Sum_probs=33.5
Q ss_pred hHHHHHHhHhhhcccCCCCcchhHHhhcCcccchhHHHHHHhcccccccccccceecchhhcccC
Q psy7088 731 FHRLWSALQFVYCIPVGDTEFTVEELFGEGLNWAGCTMIVLLGQQRRFEALDFCYHILRVQRVDG 795 (873)
Q Consensus 731 F~RlWSaLQF~~C~p~~~~~~~~~e~fGDGl~WaGctII~LLgQq~rFe~lDF~yhil~V~~~d~ 795 (873)
-||++-++| +|-... .-.++|.||||.+ .+.||+-.|-|+..-.+
T Consensus 8 iYRlyE~v~-vYG~~~---K~li~E~FGDGIM----------------SAIdF~~~v~k~~dp~g 52 (69)
T cd00559 8 IYRFYEIVQ-VYGPTL---KALIHEKFGDGIM----------------SAIDFKLDVDKVEDPGG 52 (69)
T ss_pred eeehHHHHH-HhhHHH---HHHHHHHcCCcee----------------eeEEeeeeEEeccCCCC
Confidence 388888888 343221 2367899999998 67899999999886644
No 49
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=58.02 E-value=18 Score=35.39 Aligned_cols=99 Identities=26% Similarity=0.219 Sum_probs=63.1
Q ss_pred hhHHHHHHHHhhcCCceecC-CCC-----C--CC---HHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEE
Q psy7088 36 DGEVATARAAGMMDAIMILS-LMS-----T--TS---LEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVI 104 (873)
Q Consensus 36 dGE~a~ARAAa~aGip~~LS-t~S-----s--~S---lEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvv 104 (873)
+.....++.+.+.|+-++.. +.. . .. ++++... .+.+...|++.....+......++++++|+.+|.+
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l 90 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAE-TDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEI 90 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhh-cCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEE
Confidence 34577888888887655433 111 1 11 4445444 34678899987665555544468999999999888
Q ss_pred eeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHhc-CCccchhhh
Q psy7088 105 TMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQAT-KLPIVCKDS 165 (873)
Q Consensus 105 TVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t-~lPl~lkgt 165 (873)
....+.. +...++.++++++.+ +.|+.++-.
T Consensus 91 ~~~~~~~------------------------------~~~~~~~~~~i~~~~~~~~v~~~~~ 122 (200)
T cd04722 91 HGAVGYL------------------------------AREDLELIRELREAVPDVKVVVKLS 122 (200)
T ss_pred eccCCcH------------------------------HHHHHHHHHHHHHhcCCceEEEEEC
Confidence 7765321 123456788888887 677766644
No 50
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=56.94 E-value=34 Score=37.11 Aligned_cols=133 Identities=13% Similarity=0.121 Sum_probs=74.7
Q ss_pred HHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEE--EEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCcc-----
Q psy7088 39 VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQ--MYIFKDRALSLQMVQRAERSGYSAIVITMDTAVL----- 111 (873)
Q Consensus 39 ~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQ--LY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~----- 111 (873)
..+.+.++..++|.+++. ...++|++.+....|..+.- -....+.+..++++++. |-..+++++|....
T Consensus 64 ~~i~~i~~~~~~pv~~gG-Gi~s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~---~~~~i~vsiD~k~g~~~~~ 139 (258)
T PRK01033 64 ELIENLASECFMPLCYGG-GIKTLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERF---GSQSVVVSIDVKKNLGGKF 139 (258)
T ss_pred HHHHHHHHhCCCCEEECC-CCCCHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHh---CCCcEEEEEEEecCCCCcE
Confidence 356666667789988776 66788998654221222211 11235666666665554 54569999998532
Q ss_pred -----Ccccccc-cccccccccccCcchhhh-----hhccCCCCCHHHHHHHHHhcCCccchhhhhhhhhhhhhh
Q psy7088 112 -----GSRYHIS-KFRDISAEECSSGLTDYV-----ANQFDDSVDWDDVRSLVQATKLPIVCKDSLQQCCDLSQL 175 (873)
Q Consensus 112 -----G~RErd~-~f~~~~~~~~~~~~~~~v-----~~~~d~sltWeDL~wLR~~t~lPl~lkgtl~~~~dls~L 175 (873)
||++... ....+.......+....+ ........+|+-++.+++.++.|++..|=+....|+-.+
T Consensus 140 ~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l 214 (258)
T PRK01033 140 DVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEA 214 (258)
T ss_pred EEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHH
Confidence 2222110 000000000000000000 001112359999999999999999999999999998654
No 51
>PF02560 Cyanate_lyase: Cyanate lyase C-terminal domain; InterPro: IPR003712 Some bacteria can overcome the toxicity of environmental cyanate by hydrolysis of cyanate. This reaction is catalyzed by cyanate lyase (also known as cyanase) []. Cyanate lyase is found in bacteria and plants and catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. The cyanate lyase monomer is composed of two domains. The N-terminal domain shows structural similarity to the DNA-binding alpha-helix bundle motif. The C-terminal domain has an 'open fold' with no structural homology to other proteins. The dimer structure reveals the C-terminal domains to be intertwined, and the decamer is formed by a pentamer of these dimers. The active site of the enzyme is located between dimers and is comprised of residues from four adjacent subunits of the homodecamer []. ; GO: 0008824 cyanate hydratase activity, 0009439 cyanate metabolic process; PDB: 2IV1_B 2IUO_A 2IVQ_B 1DW9_A 1DWK_E 2IVG_G 2IU7_J 2IVB_A.
Probab=56.60 E-value=4 Score=36.63 Aligned_cols=46 Identities=30% Similarity=0.572 Sum_probs=33.4
Q ss_pred hHHHHHHhHhhhcccCCCCcchhHHhhcCcccchhHHHHHHhcccccccccccceecchhhcccCC
Q psy7088 731 FHRLWSALQFVYCIPVGDTEFTVEELFGEGLNWAGCTMIVLLGQQRRFEALDFCYHILRVQRVDGR 796 (873)
Q Consensus 731 F~RlWSaLQF~~C~p~~~~~~~~~e~fGDGl~WaGctII~LLgQq~rFe~lDF~yhil~V~~~d~~ 796 (873)
-||++-++| +|.... .-.++|.||||.+ .+.||+-.|-|+..-+|.
T Consensus 12 iYR~yE~v~-vYG~~~---K~li~E~FGDGIM----------------SAIdF~~~v~k~~d~~Gd 57 (73)
T PF02560_consen 12 IYRLYEIVQ-VYGPAI---KALIHEKFGDGIM----------------SAIDFKMDVEKVEDPKGD 57 (73)
T ss_dssp HHHHHHHHH-HHHHHH---HHHHHHHT-SEEE----------------EEEEEEEEEEEEE-TTSE
T ss_pred EeeeehhhH-hhCHHH---HHHHHHhhCcceE----------------EEeeEEEEEEEeeCCCCC
Confidence 499999998 554332 2368899999998 578999999888766654
No 52
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=52.17 E-value=90 Score=35.44 Aligned_cols=39 Identities=31% Similarity=0.532 Sum_probs=27.5
Q ss_pred CcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceec
Q psy7088 9 SGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL 54 (873)
Q Consensus 9 tsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~L 54 (873)
++|+++|.++..||++ ..|. ..+|| ..+...++|.-+++
T Consensus 46 L~~~~~Gl~l~NPi~l-AsG~----~~~~~--~~~~~~~~G~Gavv 84 (335)
T TIGR01036 46 LEVTVLGLKFPNPLGL-AAGF----DKDGE--AIDALGAMGFGFLE 84 (335)
T ss_pred CcEEECCEECCCCcEe-CCcc----CCCHH--HHHHHHhcCCCEEE
Confidence 8999999999999999 4442 34566 44554555666655
No 53
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=50.83 E-value=85 Score=32.99 Aligned_cols=131 Identities=15% Similarity=0.195 Sum_probs=71.3
Q ss_pred HHHHHHhhcCCceecCCCCCCCHHHHHhcC--CCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccC-----ccC
Q psy7088 40 ATARAAGMMDAIMILSLMSTTSLEEVRAQN--PSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTA-----VLG 112 (873)
Q Consensus 40 a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~--p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtP-----v~G 112 (873)
.+.+.+...++|..++ ..-.++|++..+. +-..--.=....+|.+...++ +++.|-+.+++.+|.- +.|
T Consensus 63 ~i~~i~~~~~~pi~~g-gGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~---~~~~g~~~i~~sid~~~~~v~~~g 138 (230)
T TIGR00007 63 VIKKIVRETGVPVQVG-GGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKEL---LKEYGPERIVVSLDARGGEVAVKG 138 (230)
T ss_pred HHHHHHHhcCCCEEEe-CCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHH---HHHhCCCcEEEEEEEECCEEEEcC
Confidence 3455556668888884 4667888886532 211111111223555554443 4556767789998853 345
Q ss_pred cccccc-cccccccccccCcchhhh-----hhccCCCCCHHHHHHHHHhcCCccchhhhhhhhhhhhh
Q psy7088 113 SRYHIS-KFRDISAEECSSGLTDYV-----ANQFDDSVDWDDVRSLVQATKLPIVCKDSLQQCCDLSQ 174 (873)
Q Consensus 113 ~RErd~-~f~~~~~~~~~~~~~~~v-----~~~~d~sltWeDL~wLR~~t~lPl~lkgtl~~~~dls~ 174 (873)
+++... ....+.......+....+ ........+|+-++.+++.++.|+...|=++...|+-.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~ 206 (230)
T TIGR00007 139 WLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIA 206 (230)
T ss_pred CcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHH
Confidence 554321 000000000000000000 00011236899999999999999999999999999855
No 54
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=50.45 E-value=25 Score=38.55 Aligned_cols=118 Identities=14% Similarity=0.263 Sum_probs=79.8
Q ss_pred CCceecCCCCCCCHHHHH------hcCCCCceEEEEEeeCCHH----HHHHHHHHHHHc---CCcEEEEeeccCccCccc
Q psy7088 49 DAIMILSLMSTTSLEEVR------AQNPSTTLWLQMYIFKDRA----LSLQMVQRAERS---GYSAIVITMDTAVLGSRY 115 (873)
Q Consensus 49 Gip~~LSt~Ss~SlEeIa------aa~p~g~~WFQLY~~~Dr~----~~~~LL~RAe~A---G~kALvvTVDtPv~G~RE 115 (873)
+....--|.+..+-||-. ... .+..|.-|-+-.|.. ...+.+++|+.. |+..+-++.|.|...+|-
T Consensus 62 ~~~~lpNTaG~~ta~eAv~~a~lare~-~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l 140 (248)
T cd04728 62 GYTLLPNTAGCRTAEEAVRTARLAREA-LGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRL 140 (248)
T ss_pred CCEECCCCCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 443333455556666542 233 356899999988764 457889999999 999999999999998876
Q ss_pred ccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhhhhhhhhhhhh
Q psy7088 116 HISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDSLQQCCDLSQ 174 (873)
Q Consensus 116 rd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgtl~~~~dls~ 174 (873)
.+..=.-. ...+.++++. .+-.+++-|+.+++..+.|++..|=+..-.|...
T Consensus 141 ~~~G~~~v------mPlg~pIGsg-~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~ 192 (248)
T cd04728 141 EDAGCAAV------MPLGSPIGSG-QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQ 192 (248)
T ss_pred HHcCCCEe------CCCCcCCCCC-CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHH
Confidence 54321111 1122233322 2334799999999998999999988887777644
No 55
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=50.34 E-value=41 Score=38.03 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=77.8
Q ss_pred ChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcc
Q psy7088 35 ADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSR 114 (873)
Q Consensus 35 pdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~R 114 (873)
|+--...|+-+.+.| .-++=-...|+...|.....++. +.+|++.+.++|+...++.- -+-|||=. ..|+-
T Consensus 78 p~~l~eaA~~~~~~g-~~~IdlN~GCP~~~V~~~g~Ga~------Ll~~p~lv~~iv~a~~~av~-~iPVTVKi-RlG~d 148 (323)
T COG0042 78 PELLAEAAKIAEELG-ADIIDLNCGCPSPKVVKGGAGAA------LLKNPELLAEIVKAMVEAVG-DIPVTVKI-RLGWD 148 (323)
T ss_pred HHHHHHHHHHHHhcC-CCEEeeeCCCChHHhcCCCcchh------hcCCHHHHHHHHHHHHHhhC-CCCeEEEE-ecccC
Confidence 333456667777777 56666677889999977643322 36789999999988887754 45666654 23443
Q ss_pred cccccccccc---cccccC---cchhhhhhccCCCCCHHHHHHHHHhcC-Cccchhhhhhhhhhh
Q psy7088 115 YHISKFRDIS---AEECSS---GLTDYVANQFDDSVDWDDVRSLVQATK-LPIVCKDSLQQCCDL 172 (873)
Q Consensus 115 Erd~~f~~~~---~~~~~~---~~~~~v~~~~d~sltWeDL~wLR~~t~-lPl~lkgtl~~~~dl 172 (873)
+.+....... ...... -.++..........+|+.|+.+|+..+ .|++..|-+....|-
T Consensus 149 ~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a 213 (323)
T COG0042 149 DDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDA 213 (323)
T ss_pred cccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHH
Confidence 3321000000 000000 011112223344589999999999999 999999977665554
No 56
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=48.61 E-value=60 Score=36.70 Aligned_cols=127 Identities=17% Similarity=0.121 Sum_probs=76.1
Q ss_pred CcccCCcceechhhhhhcCCChhHHHHHHHHhhcCC------ceecCC-CCCCCHHHHHh-cCCCCceEEEEEeeCCHHH
Q psy7088 15 GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDA------IMILSL-MSTTSLEEVRA-QNPSTTLWLQMYIFKDRAL 86 (873)
Q Consensus 15 G~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGi------p~~LSt-~Ss~SlEeIaa-a~p~g~~WFQLY~~~Dr~~ 86 (873)
+.....|+++||++.. .+...-+-|++.|. .|+.+. .......+... ...+.+.-.||. -.|.+.
T Consensus 6 ~~~~~~~~~lAPM~g~------td~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~ 78 (333)
T PRK11815 6 SKLPSRRFSVAPMMDW------TDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPAD 78 (333)
T ss_pred ccCCCCCEEEeCCCCC------cCHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHH
Confidence 4556779999998754 34555555666564 222221 11111222222 233567888985 567777
Q ss_pred HHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhh
Q psy7088 87 SLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKD 164 (873)
Q Consensus 87 ~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkg 164 (873)
..+-.++|+++|+.+|=+...+|..-.|... + | +.. ..++.+.=+-++.+|+.++.|+.+|-
T Consensus 79 ~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~--~----------G-s~L---~~~p~~~~eiv~avr~~v~~pVsvKi 140 (333)
T PRK11815 79 LAEAAKLAEDWGYDEINLNVGCPSDRVQNGR--F----------G-ACL---MAEPELVADCVKAMKDAVSIPVTVKH 140 (333)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCHHHccCCC--e----------e-eHH---hcCHHHHHHHHHHHHHHcCCceEEEE
Confidence 7888899999999999899988776433210 0 0 001 11233333557888888889999884
No 57
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=48.57 E-value=69 Score=35.14 Aligned_cols=79 Identities=20% Similarity=0.285 Sum_probs=56.2
Q ss_pred HHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccc
Q psy7088 39 VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHIS 118 (873)
Q Consensus 39 ~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~ 118 (873)
..+.+++++.|.|.++|+.-..+++|+..+ ++..++.|.+-|+++-= |.+.
T Consensus 122 ~~LL~~~a~~gkPVilk~G~~~t~~e~~~A----------------------ve~i~~~Gn~~i~l~~r----G~s~--- 172 (260)
T TIGR01361 122 FELLKEVGKQGKPVLLKRGMGNTIEEWLYA----------------------AEYILSSGNGNVILCER----GIRT--- 172 (260)
T ss_pred HHHHHHHhcCCCcEEEeCCCCCCHHHHHHH----------------------HHHHHHcCCCcEEEEEC----CCCC---
Confidence 468888888999999998888888888766 45556788887777421 1110
Q ss_pred cccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchh
Q psy7088 119 KFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCK 163 (873)
Q Consensus 119 ~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lk 163 (873)
|. ......++|.-|..+|+.+++|+.+.
T Consensus 173 -y~----------------~~~~~~~dl~~i~~lk~~~~~pV~~d 200 (260)
T TIGR01361 173 -FE----------------KATRNTLDLSAVPVLKKETHLPIIVD 200 (260)
T ss_pred -CC----------------CCCcCCcCHHHHHHHHHhhCCCEEEc
Confidence 10 01123578999999999999999984
No 58
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=47.77 E-value=55 Score=36.82 Aligned_cols=90 Identities=18% Similarity=0.023 Sum_probs=59.8
Q ss_pred CcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCC-CCCCCH--------HHHHhcCCCCceEEEEEeeCCHH
Q psy7088 15 GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSL-MSTTSL--------EEVRAQNPSTTLWLQMYIFKDRA 85 (873)
Q Consensus 15 G~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt-~Ss~Sl--------EeIaaa~p~g~~WFQLY~~~Dr~ 85 (873)
+.++..|+++||++.. .+...-+.|.+.|..++.+- .+..++ ..........+.-.|+ .-.|.+
T Consensus 5 ~~~~~~~~~lAPM~g~------td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl-~g~~~~ 77 (321)
T PRK10415 5 QYQLRNRLIAAPMAGI------TDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQI-AGSDPK 77 (321)
T ss_pred CccCCCCEEecCCCCC------CcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEE-eCCCHH
Confidence 3467789999998643 57788888888886655442 221111 1111111123455788 456778
Q ss_pred HHHHHHHHHHHcCCcEEEEeeccCcc
Q psy7088 86 LSLQMVQRAERSGYSAIVITMDTAVL 111 (873)
Q Consensus 86 ~~~~LL~RAe~AG~kALvvTVDtPv~ 111 (873)
...+..+++++.|++.|=+..=+|..
T Consensus 78 ~~~~aa~~~~~~g~d~IdlN~gCP~~ 103 (321)
T PRK10415 78 EMADAARINVESGAQIIDINMGCPAK 103 (321)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCHH
Confidence 77788888888999999999999863
No 59
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=46.40 E-value=46 Score=34.82 Aligned_cols=81 Identities=14% Similarity=0.120 Sum_probs=47.3
Q ss_pred CCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHH----HhcCC--CCceEEEEEeeCCHHHHHHHHH
Q psy7088 19 RCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEV----RAQNP--STTLWLQMYIFKDRALSLQMVQ 92 (873)
Q Consensus 19 s~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeI----aaa~p--~g~~WFQLY~~~Dr~~~~~LL~ 92 (873)
..|++.||+++. .+...+++++++|..-++|... .+.+++ .+..+ +.+.-+++.....+....+.++
T Consensus 2 ~~pi~~a~m~g~------~~~~~~~~~~~~G~ig~i~~~~-~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGV------STPELAAAVSNAGGLGFIGAGY-LTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCC------CCHHHHHHHHhCCCccccCCCC-CCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 369999996544 2556777777777544454322 133333 11111 1233356655332235667889
Q ss_pred HHHHcCCcEEEEee
Q psy7088 93 RAERSGYSAIVITM 106 (873)
Q Consensus 93 RAe~AG~kALvvTV 106 (873)
.|+++|++.|.+.-
T Consensus 75 ~~~~~g~d~v~l~~ 88 (236)
T cd04730 75 VALEEGVPVVSFSF 88 (236)
T ss_pred HHHhCCCCEEEEcC
Confidence 99999999988753
No 60
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=45.28 E-value=81 Score=35.10 Aligned_cols=144 Identities=10% Similarity=0.154 Sum_probs=82.5
Q ss_pred ccCCcceechhhhhhcCCChhHH---HHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEeeC-----CHHHHH
Q psy7088 17 RYRCPVGIAPSAMQKLAHADGEV---ATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFK-----DRALSL 88 (873)
Q Consensus 17 ~ls~PI~IAPtG~~~L~hpdGE~---a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~~-----Dr~~~~ 88 (873)
+...|++|.=.... +-+.+.|. .+..+|.++.+|.++=-==..++|.+.++...|..|+|+=-.. +-+.++
T Consensus 40 ~~~~Pvii~~~~~~-~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~ 118 (281)
T PRK06806 40 ELNSPIILQIAEVR-LNHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTK 118 (281)
T ss_pred HhCCCEEEEcCcch-hccCChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHH
Confidence 34567776433222 23334443 3445677788998885333468888887766678999974221 235677
Q ss_pred HHHHHHHHcCCcEEEEeeccCccCccccccc-----cccccc----------ccccCcchhhhhh-ccCCCCCHHHHHHH
Q psy7088 89 QMVQRAERSGYSAIVITMDTAVLGSRYHISK-----FRDISA----------EECSSGLTDYVAN-QFDDSVDWDDVRSL 152 (873)
Q Consensus 89 ~LL~RAe~AG~kALvvTVDtPv~G~RErd~~-----f~~~~~----------~~~~~~~~~~v~~-~~d~sltWeDL~wL 152 (873)
++++.|++.|+. |-.|.-..|.-+.+.. +.+... +.-.-+.+...+. ...+.++++.++++
T Consensus 119 ~v~~~a~~~gv~---veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i 195 (281)
T PRK06806 119 EIVELAKQYGAT---VEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEI 195 (281)
T ss_pred HHHHHHHHcCCe---EEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHH
Confidence 888999998876 2344434443332111 111100 0000000111111 12467999999999
Q ss_pred HHhcCCccchhh
Q psy7088 153 VQATKLPIVCKD 164 (873)
Q Consensus 153 R~~t~lPl~lkg 164 (873)
++..+.|+++-|
T Consensus 196 ~~~~~iPlV~hG 207 (281)
T PRK06806 196 NDVVHIPLVLHG 207 (281)
T ss_pred HHhcCCCEEEEC
Confidence 999999999988
No 61
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=43.89 E-value=1.3e+02 Score=31.04 Aligned_cols=106 Identities=21% Similarity=0.286 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHhhcccccChHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccccCCCCCCCCC--
Q psy7088 496 KQLNMAYYSIYGQYTGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGS-- 573 (873)
Q Consensus 496 ~~l~~a~~~~~~~~~~f~g~~H~~a~~rLlg~~~i~~~i~ell~~~~~~i~~~~~~yv~~l~~~mPk~~kLP~~dyGs-- 573 (873)
+.|.+||+-+..--.|++...++.++.|-+|+.-=-- ++..+++.+|+ .+|+
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~-------------------ei~~l~~~~d~-------~~~~id 73 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEA-------------------EINKLFEEIDA-------GNETVD 73 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHH-------------------HHHHHHHhccC-------CCCccC
Confidence 3678899988888899999999999999999944333 33333333442 1111
Q ss_pred -hhHHHHHHHhccccccCchhhHHHHHHHHh----------hhhHHHHHHHHHHhhchHHHHhHhhhcc
Q psy7088 574 -PGVLGYYHAQLNDIVQYPDAKTELFHNFRE----------LGNTILFCLLMEQALSQEEVCDLLHAAP 631 (873)
Q Consensus 574 -~G~l~yy~~~L~~~~~Y~dLk~evfq~fRE----------iGN~i~f~~lLd~aL~q~e~~~~~~aaP 631 (873)
+-.+..+-..+ .-.+...++..+||. +|+.+-++..|++.++++|+-.++..+.
T Consensus 74 f~~Fl~~ms~~~----~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d 138 (160)
T COG5126 74 FPEFLTVMSVKL----KRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYD 138 (160)
T ss_pred HHHHHHHHHHHh----ccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcC
Confidence 11222222222 234556677777774 5788888889999999999999987744
No 62
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=43.24 E-value=1.1e+02 Score=33.36 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=67.1
Q ss_pred HHHHHHHhhcCCceecCCCCC-------------CC----HHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCcE
Q psy7088 39 VATARAAGMMDAIMILSLMST-------------TS----LEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSA 101 (873)
Q Consensus 39 ~a~ARAAa~aGip~~LSt~Ss-------------~S----lEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kA 101 (873)
...|+.+.++|+-++-=+.++ .. +++|.++. +-+.+.-+=...+.+.+.+++++++++|+.+
T Consensus 114 ~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~ 192 (289)
T cd02810 114 VELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADG 192 (289)
T ss_pred HHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCE
Confidence 566777777776554322221 11 22333332 2345555544556667889999999999999
Q ss_pred EEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHhc--CCccchhhhhhhhhhh
Q psy7088 102 IVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQAT--KLPIVCKDSLQQCCDL 172 (873)
Q Consensus 102 LvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t--~lPl~lkgtl~~~~dl 172 (873)
|+++-=.... ..+..-..........+. ........+|+.++.+++.. +.|++..|=+...-|.
T Consensus 193 i~~~~~~~~~---~~~~~~~~~~~~~~~~g~----sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da 258 (289)
T cd02810 193 LTAINTISGR---VVDLKTVGPGPKRGTGGL----SGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDV 258 (289)
T ss_pred EEEEcccCcc---ceecccCccccCCCCCcc----CcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHH
Confidence 9886321110 000000000000000000 00011224688899999988 7899888877766555
No 63
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=42.86 E-value=41 Score=37.54 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHhcCCccchhhhhh
Q psy7088 142 DSVDWDDVRSLVQATKLPIVCKDSLQ 167 (873)
Q Consensus 142 ~sltWeDL~wLR~~t~lPl~lkgtl~ 167 (873)
|.++|+-++.|++.++.||++-|.=.
T Consensus 184 p~l~~~~l~~I~~~~~vPLVlHGgSG 209 (283)
T PRK07998 184 PRIDIPLLKRIAEVSPVPLVIHGGSG 209 (283)
T ss_pred CCcCHHHHHHHHhhCCCCEEEeCCCC
Confidence 77999999999999999999988643
No 64
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=41.72 E-value=84 Score=35.36 Aligned_cols=30 Identities=10% Similarity=0.434 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHhcCCccchhhhhhhhhhh
Q psy7088 143 SVDWDDVRSLVQATKLPIVCKDSLQQCCDL 172 (873)
Q Consensus 143 sltWeDL~wLR~~t~lPl~lkgtl~~~~dl 172 (873)
..+|+.++.+++..+.|++..|=+..-.|.
T Consensus 180 ~~~~~~i~~ik~~~~iPVi~nGdI~t~~da 209 (312)
T PRK10550 180 HINWQAIGEIRQRLTIPVIANGEIWDWQSA 209 (312)
T ss_pred cccHHHHHHHHhhcCCcEEEeCCcCCHHHH
Confidence 468999999999999999999988776665
No 65
>KOG1917|consensus
Probab=41.46 E-value=1.6e+02 Score=37.77 Aligned_cols=97 Identities=22% Similarity=0.331 Sum_probs=73.3
Q ss_pred ccChHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccccCCCCCCCCChhHHHHHHHhccccccCc
Q psy7088 512 FVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYYHAQLNDIVQYP 591 (873)
Q Consensus 512 f~g~~H~~a~~rLlg~~~i~~~i~ell~~~~~~i~~~~~~yv~~l~~~mPk~~kLP~~dyGs~G~l~yy~~~L~~~~~Y~ 591 (873)
|-....++|+++|+|+-|+-.+-+.|+=++.++|+. |+.-|.+-++.+-.. +..+..+..+.=--.+|+.
T Consensus 827 ~SDl~ElrAlvel~GpYGvk~Lse~LmwHvasqV~e-lkklv~tn~d~L~~~----rssfdkpd~m~~~~~~l~~----- 896 (1125)
T KOG1917|consen 827 YSDLSELRALVELLGPYGVKFLSEMLMWHVASQVNE-LKKLVVTNKDVLEQA----RSSFDKPDRMKRLLKRLQI----- 896 (1125)
T ss_pred cCCHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHH----HHhCCCHHHHHHHHHHHhH-----
Confidence 445678999999999999999976666699999875 666666555544322 3556667777666555554
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHHhhch
Q psy7088 592 DAKTELFHNFRELGNTILFCLLMEQALSQ 620 (873)
Q Consensus 592 dLk~evfq~fREiGN~i~f~~lLd~aL~q 620 (873)
-..|+|-+-+||=++.|=.++-+||+.
T Consensus 897 --~D~VL~rmtiiGvil~Frdll~Ealr~ 923 (1125)
T KOG1917|consen 897 --ADTVLQRMTIIGVILSFRDLLHEALRD 923 (1125)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 338999999999999999999999864
No 66
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=41.20 E-value=1.4e+02 Score=31.16 Aligned_cols=131 Identities=12% Similarity=0.143 Sum_probs=67.5
Q ss_pred HHHHHHhhcCCceecCCCCCCCHHHHHhcC--CCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCcc-----C
Q psy7088 40 ATARAAGMMDAIMILSLMSTTSLEEVRAQN--PSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVL-----G 112 (873)
Q Consensus 40 a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~--p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~-----G 112 (873)
.+.+.+...++|.++... ..++|++.+.. +-..--+=-....|.+..+++.+ +.|-..+++.+|.... |
T Consensus 64 ~i~~i~~~~~~pv~~~Gg-I~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~---~~g~~~i~~sid~~~~~~~~~~ 139 (234)
T cd04732 64 LIEEIVKAVGIPVQVGGG-IRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLK---EYGGERIVVGLDAKDGKVATKG 139 (234)
T ss_pred HHHHHHHhcCCCEEEeCC-cCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHH---HcCCceEEEEEEeeCCEEEECC
Confidence 455555566888777543 67788876531 21111111122345555544443 3465689999997542 2
Q ss_pred ccccc-ccccccccccccCcchhh----h-hhccCCCCCHHHHHHHHHhcCCccchhhhhhhhhhhhh
Q psy7088 113 SRYHI-SKFRDISAEECSSGLTDY----V-ANQFDDSVDWDDVRSLVQATKLPIVCKDSLQQCCDLSQ 174 (873)
Q Consensus 113 ~RErd-~~f~~~~~~~~~~~~~~~----v-~~~~d~sltWeDL~wLR~~t~lPl~lkgtl~~~~dls~ 174 (873)
+++.. .....+.......+.... + ........+|+-++.+++.++.|+...|=++...|+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~ 207 (234)
T cd04732 140 WLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKA 207 (234)
T ss_pred CeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHH
Confidence 21110 000000000000000000 0 00011236899999999999999999998888888744
No 67
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=40.55 E-value=1e+02 Score=34.17 Aligned_cols=17 Identities=24% Similarity=0.149 Sum_probs=14.9
Q ss_pred ceEcCcccCCcceechh
Q psy7088 11 LTVLGTRYRCPVGIAPS 27 (873)
Q Consensus 11 TtIfG~~ls~PI~IAPt 27 (873)
|+++|.++.-||++|.-
T Consensus 1 ~~~~Gl~l~nPi~~Asg 17 (294)
T cd04741 1 VTPPGLTISPPLMNAAG 17 (294)
T ss_pred CccCCeeCCCCCEECCC
Confidence 57899999999999863
No 68
>PRK00208 thiG thiazole synthase; Reviewed
Probab=40.01 E-value=47 Score=36.54 Aligned_cols=119 Identities=14% Similarity=0.259 Sum_probs=80.5
Q ss_pred cCCceecCCCCCCCHHHHH------hcCCCCceEEEEEeeCCHH----HHHHHHHHHHHc---CCcEEEEeeccCccCcc
Q psy7088 48 MDAIMILSLMSTTSLEEVR------AQNPSTTLWLQMYIFKDRA----LSLQMVQRAERS---GYSAIVITMDTAVLGSR 114 (873)
Q Consensus 48 aGip~~LSt~Ss~SlEeIa------aa~p~g~~WFQLY~~~Dr~----~~~~LL~RAe~A---G~kALvvTVDtPv~G~R 114 (873)
.|+...--|.+..+-||-. ... .+..|.-|-+-.|.. ...+.+++|+.. |+..+-++.|.|...+|
T Consensus 61 ~~~~~lpNTaG~~ta~eAv~~a~lare~-~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~ 139 (250)
T PRK00208 61 LGVTLLPNTAGCRTAEEAVRTARLAREA-LGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKR 139 (250)
T ss_pred cCCEECCCCCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 3444434456666666653 222 356899999988764 457889999999 99999899999999887
Q ss_pred cccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhhhhhhhhhhhh
Q psy7088 115 YHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDSLQQCCDLSQ 174 (873)
Q Consensus 115 Erd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgtl~~~~dls~ 174 (873)
-.+..=.-+ ...+.++++. .+-.+++-++.+++..+.|++..|=+..-.|...
T Consensus 140 l~~~G~~~v------mPlg~pIGsg-~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~ 192 (250)
T PRK00208 140 LEEAGCAAV------MPLGAPIGSG-LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQ 192 (250)
T ss_pred HHHcCCCEe------CCCCcCCCCC-CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHH
Confidence 654321111 1112233322 1334789999999998899999988888777644
No 69
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=39.66 E-value=32 Score=39.57 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=73.4
Q ss_pred hhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEe
Q psy7088 26 PSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 105 (873)
Q Consensus 26 PtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvT 105 (873)
|-+++++. .+|=..+++++.+.|++++.+-+....++.+++.. -++|+ ..-.-....|++.+.+.|-..++=|
T Consensus 143 p~sf~G~g-~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~~----d~lqI--ga~~~~n~~LL~~va~t~kPVllk~ 215 (352)
T PRK13396 143 PYAFQGHG-ESALELLAAAREATGLGIITEVMDAADLEKIAEVA----DVIQV--GARNMQNFSLLKKVGAQDKPVLLKR 215 (352)
T ss_pred CcccCCch-HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhhC----CeEEE--CcccccCHHHHHHHHccCCeEEEeC
Confidence 35556654 45557889999999999999989999999998763 24454 2222223567888777765433321
Q ss_pred eccCccCcccccc---cccccccc---cccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhhh
Q psy7088 106 MDTAVLGSRYHIS---KFRDISAE---ECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDS 165 (873)
Q Consensus 106 VDtPv~G~RErd~---~f~~~~~~---~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgt 165 (873)
==++.. .|... .+...... ..-.|...+........++|.-|.++|+.+++|++++-+
T Consensus 216 G~~~t~--ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~Dps 279 (352)
T PRK13396 216 GMAATI--DEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPS 279 (352)
T ss_pred CCCCCH--HHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCc
Confidence 111000 00000 00000000 000111111112224678999999999999999987754
No 70
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=39.56 E-value=60 Score=36.28 Aligned_cols=32 Identities=16% Similarity=0.467 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHhcCCccchhhhhhhhhhh
Q psy7088 141 DDSVDWDDVRSLVQATKLPIVCKDSLQQCCDL 172 (873)
Q Consensus 141 d~sltWeDL~wLR~~t~lPl~lkgtl~~~~dl 172 (873)
.+..+|+.++++++..+.|++..|=+....|.
T Consensus 167 ~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~ 198 (309)
T PF01207_consen 167 KGPADWEAIAEIKEALPIPVIANGDIFSPEDA 198 (309)
T ss_dssp TS---HHHHHHCHHC-TSEEEEESS--SHHHH
T ss_pred CcccchHHHHHHhhcccceeEEcCccCCHHHH
Confidence 44689999999999999999999988877665
No 71
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=38.92 E-value=50 Score=35.78 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=65.1
Q ss_pred CceecCCCCCCCHHHHHhcCC-CCce-EEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeecc-----CccCcccccc-ccc
Q psy7088 50 AIMILSLMSTTSLEEVRAQNP-STTL-WLQMYIFKDRALSLQMVQRAERSGYSAIVITMDT-----AVLGSRYHIS-KFR 121 (873)
Q Consensus 50 ip~~LSt~Ss~SlEeIaaa~p-~g~~-WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDt-----Pv~G~RErd~-~f~ 121 (873)
.|..++ .+..|+|++..... +..+ -.-....+|.+..+++ ++.|-+ +++.+|+ ...||++... ...
T Consensus 74 ~~v~vG-GGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~----~~~~~~-ivvslD~k~g~v~~~gw~~~~~~~~~ 147 (241)
T PRK14114 74 EHIQIG-GGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFL----KEIDVE-PVFSLDTRGGKVAFKGWLAEEEIDPV 147 (241)
T ss_pred CcEEEe-cCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHH----HHhCCC-EEEEEEccCCEEeeCCCeecCCCCHH
Confidence 455553 45678888865321 1111 1111123566665555 334544 7999997 3467766421 100
Q ss_pred ccccccccCcchhhhhh-----ccCCCCCHHHHHHHHHhcCCccchhhhhhhhhhhhhhh
Q psy7088 122 DISAEECSSGLTDYVAN-----QFDDSVDWDDVRSLVQATKLPIVCKDSLQQCCDLSQLW 176 (873)
Q Consensus 122 ~~~~~~~~~~~~~~v~~-----~~d~sltWeDL~wLR~~t~lPl~lkgtl~~~~dls~Lw 176 (873)
.+.......+....+-. -.....+.+-++.+++.++.|++.+|=++...|+..|.
T Consensus 148 e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~ 207 (241)
T PRK14114 148 SLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQ 207 (241)
T ss_pred HHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
Confidence 00000000000000000 00123678889999999999999999999999998763
No 72
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=38.76 E-value=87 Score=33.91 Aligned_cols=74 Identities=9% Similarity=0.220 Sum_probs=48.7
Q ss_pred hcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeec
Q psy7088 31 KLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMD 107 (873)
Q Consensus 31 ~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVD 107 (873)
+.-.|.-=-++.|.|.+.|+.-+...........+..++.++..|..++...|-+ +.++..++.|+..+..+..
T Consensus 26 ~V~~p~NlGAIiRta~AfGv~~V~~v~~~~~~~~~~~~s~Ga~~wv~i~~~~~~~---~~i~~lk~~g~~i~at~~~ 99 (229)
T PRK11081 26 QVHKPHNVSAIIRTADAVGVHEVHAVWPGSRMRTMGSTAAGSNSWVQVKTHRTIG---DAVAHLKGQGMQILATHLS 99 (229)
T ss_pred CCCCcchHHHHHHHHHHhCCCeEEEecCCCccchhhhhcCCchheEEEEEeCCHH---HHHHHHHhCCCEEEEEeCC
Confidence 3434444568999999999977644333334444444444567999998877654 4566667789987777653
No 73
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=37.56 E-value=91 Score=32.46 Aligned_cols=32 Identities=19% Similarity=0.486 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHhcCCccchhhhhhhhhhhhh
Q psy7088 143 SVDWDDVRSLVQATKLPIVCKDSLQQCCDLSQ 174 (873)
Q Consensus 143 sltWeDL~wLR~~t~lPl~lkgtl~~~~dls~ 174 (873)
..+|+.++.+|+.++.|+...|-+....|...
T Consensus 169 ~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~ 200 (231)
T cd02801 169 PADWDYIAEIKEAVSIPVIANGDIFSLEDALR 200 (231)
T ss_pred CCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHH
Confidence 45899999999999999999998887777643
No 74
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=37.41 E-value=23 Score=35.83 Aligned_cols=24 Identities=46% Similarity=0.592 Sum_probs=22.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Q psy7088 266 DEVEAEVNLCFDQFVYKLSEQIFA 289 (873)
Q Consensus 266 dEIeAEvnlcfdqlv~kls~~if~ 289 (873)
+|||+.++=||=++|+||+|..|.
T Consensus 35 ~~vE~~v~~~~~~lV~KLnE~~FR 58 (153)
T PF08146_consen 35 DEVESSVISAFVSLVLKLNEATFR 58 (153)
T ss_pred HHHHHHHHHHHHHHHHHcccchhH
Confidence 699999999999999999999887
No 75
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=36.45 E-value=56 Score=34.99 Aligned_cols=73 Identities=15% Similarity=0.032 Sum_probs=47.2
Q ss_pred HHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEE------------------------------EEeeCCHHHHH
Q psy7088 39 VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQ------------------------------MYIFKDRALSL 88 (873)
Q Consensus 39 ~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQ------------------------------LY~~~Dr~~~~ 88 (873)
..+++.-.+.+-..++|++....++.+.+..|+-+..+= .|.+.....+.
T Consensus 119 ~~v~~~l~~~~~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (237)
T cd08585 119 RRVLAALKDYKGPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSNDEADPAFWNEALLSALFSNLLTRPDFIAYHLDDLPN 198 (237)
T ss_pred HHHHHHHHhcCCCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcccccccchhHHHHHhhhhhhccCCCEEEeChhhCcC
Confidence 345555555566778888888888888776553222110 11111223456
Q ss_pred HHHHHHHHc-CCcEEEEeeccCcc
Q psy7088 89 QMVQRAERS-GYSAIVITMDTAVL 111 (873)
Q Consensus 89 ~LL~RAe~A-G~kALvvTVDtPv~ 111 (873)
+++++|+++ |.+..+.|||.+..
T Consensus 199 ~~v~~~~~~~G~~v~vWTVnd~~~ 222 (237)
T cd08585 199 PFVTLARALLGMPVIVWTVRTEED 222 (237)
T ss_pred HHHHHHHHhcCCcEEEEeCCCHHH
Confidence 789999999 99999999997643
No 76
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=35.65 E-value=1.5e+02 Score=30.15 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=58.1
Q ss_pred ceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcC-CCC--ceEEEEEeeCCHHHHHHHHHHHHHcC
Q psy7088 22 VGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQN-PST--TLWLQMYIFKDRALSLQMVQRAERSG 98 (873)
Q Consensus 22 I~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~-p~g--~~WFQLY~~~Dr~~~~~LL~RAe~AG 98 (873)
|+++|.|.. .|.-|=.-++++-+.+|.-.+....=+++ ||++.++ ... .--.=.+--.-.....++++..+++|
T Consensus 15 vlvak~GlD--gHd~gakvia~~l~d~GfeVi~~g~~~tp-~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G 91 (143)
T COG2185 15 VLVAKLGLD--GHDRGAKVIARALADAGFEVINLGLFQTP-EEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAG 91 (143)
T ss_pred EEEeccCcc--ccccchHHHHHHHHhCCceEEecCCcCCH-HHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhC
Confidence 789999955 48889999999999999988876655555 6665432 111 11111222245678899999999999
Q ss_pred CcEEEEeec
Q psy7088 99 YSAIVITMD 107 (873)
Q Consensus 99 ~kALvvTVD 107 (873)
...+.+-+=
T Consensus 92 ~~~i~v~~G 100 (143)
T COG2185 92 VEDILVVVG 100 (143)
T ss_pred CcceEEeec
Confidence 999885443
No 77
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=35.06 E-value=66 Score=36.05 Aligned_cols=191 Identities=13% Similarity=0.137 Sum_probs=100.7
Q ss_pred ceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHh------cCCCCceEEEEEeeCCH
Q psy7088 11 LTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRA------QNPSTTLWLQMYIFKDR 84 (873)
Q Consensus 11 TtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaa------a~p~g~~WFQLY~~~Dr 84 (873)
|++||.+ .||+.||++.. ....+|.|+.++|..-+++... .+.|++.+ +..+.+ |.+-+....
T Consensus 5 ~~~lgi~--~Pii~apM~~~------s~~~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~p--fgvn~~~~~ 73 (307)
T TIGR03151 5 CDLLGIE--YPIFQGGMAWV------ATGSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKP--FGVNIMLLS 73 (307)
T ss_pred hHHhCCC--CCEEcCCCCCC------CCHHHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhcCCC--cEEeeecCC
Confidence 3456554 89999999853 2356888889999888887543 35555521 111223 223222111
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeccCc-cCccccccc---ccccccc-----cccCcc------hhhhhhccCCCCCHHHH
Q psy7088 85 ALSLQMVQRAERSGYSAIVITMDTAV-LGSRYHISK---FRDISAE-----ECSSGL------TDYVANQFDDSVDWDDV 149 (873)
Q Consensus 85 ~~~~~LL~RAe~AG~kALvvTVDtPv-~G~RErd~~---f~~~~~~-----~~~~~~------~~~v~~~~d~sltWeDL 149 (873)
....+.++.+.++|++.+.++...|. .-.|-+... +...... ....+. +...+......-+|+-+
T Consensus 74 ~~~~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll 153 (307)
T TIGR03151 74 PFVDELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALV 153 (307)
T ss_pred CCHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHH
Confidence 11245667777789888876443221 000001100 1000000 000000 00011111223479999
Q ss_pred HHHHHhcCCccchhhhhhhhhhhhhhhHHHHhhhhccccchhhhhcccccccccccccccceeeecccCCchhHHHHHHh
Q psy7088 150 RSLVQATKLPIVCKDSLQQCCDLSQLWYREFYLEMTMGRRIQKCVVRHQHNEECSDLITMEKRIQFPIEMSMPWILTDHI 229 (873)
Q Consensus 150 ~wLR~~t~lPl~lkgtl~~~~dls~LwfrEfyLe~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iqFPIe~SlPwIL~~hi 229 (873)
+.+++..+.|++..|=+..-.|.... |++ |- +-+-|+-+..+-.|+..+=-.-+.+
T Consensus 154 ~~v~~~~~iPviaaGGI~~~~~~~~a------l~~--GA----------------~gV~iGt~f~~t~Es~~~~~~k~~l 209 (307)
T TIGR03151 154 PQVVDAVSIPVIAAGGIADGRGMAAA------FAL--GA----------------EAVQMGTRFLCAKECNVHPNYKEKV 209 (307)
T ss_pred HHHHHHhCCCEEEECCCCCHHHHHHH------HHc--CC----------------CEeecchHHhcccccCCCHHHHHHH
Confidence 99999999999999877766665321 121 21 2344555777777777766667777
Q ss_pred hhcCCCC
Q psy7088 230 LKTKEPS 236 (873)
Q Consensus 230 L~~~~~~ 236 (873)
++....+
T Consensus 210 ~~~~~~d 216 (307)
T TIGR03151 210 LKAKDRD 216 (307)
T ss_pred HhCCCCC
Confidence 7765433
No 78
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=35.03 E-value=1.1e+02 Score=34.42 Aligned_cols=131 Identities=9% Similarity=0.100 Sum_probs=61.6
Q ss_pred HHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEee-ccCccCcccc
Q psy7088 38 EVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITM-DTAVLGSRYH 116 (873)
Q Consensus 38 E~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTV-DtPv~G~REr 116 (873)
.....+.+.+.|++++..+.. .+-+-|......+...+- .+ .+ .+..++|+++|+.+|+++- ++- |.+..
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g-~p~~~i~~lk~~g~~v~~-~v-~s----~~~a~~a~~~GaD~Ivv~g~eag--Gh~g~ 146 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAG-NPGKYIPRLKENGVKVIP-VV-AS----VALAKRMEKAGADAVIAEGMESG--GHIGE 146 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCC-CcHHHHHHHHHcCCEEEE-Ec-CC----HHHHHHHHHcCCCEEEEECcccC--CCCCC
Confidence 345667777889888765443 333323222111333321 11 22 3456889999999988743 222 22211
Q ss_pred cccccccccccccCcchhh--hhhccC-CCCCHHHHHHHHHhcCCccchhhhhhhh---hhhhhhhHHHHhhhhc
Q psy7088 117 ISKFRDISAEECSSGLTDY--VANQFD-DSVDWDDVRSLVQATKLPIVCKDSLQQC---CDLSQLWYREFYLEMT 185 (873)
Q Consensus 117 d~~f~~~~~~~~~~~~~~~--v~~~~d-~sltWeDL~wLR~~t~lPl~lkgtl~~~---~dls~LwfrEfyLe~~ 185 (873)
-..+..+.. +.+. +.-... .-.+.+++..... .+---+.=||.--+ |..+..| ||-.++.+
T Consensus 147 ~~~~~ll~~------v~~~~~iPviaaGGI~~~~~~~~al~-~GA~gV~iGt~f~~t~Es~~~~~~-k~~l~~~~ 213 (307)
T TIGR03151 147 LTTMALVPQ------VVDAVSIPVIAAGGIADGRGMAAAFA-LGAEAVQMGTRFLCAKECNVHPNY-KEKVLKAK 213 (307)
T ss_pred CcHHHHHHH------HHHHhCCCEEEECCCCCHHHHHHHHH-cCCCEeecchHHhcccccCCCHHH-HHHHHhCC
Confidence 111111000 0000 000011 2347888776655 44444455554443 3455544 78777766
No 79
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=33.76 E-value=71 Score=34.29 Aligned_cols=130 Identities=14% Similarity=0.167 Sum_probs=73.2
Q ss_pred HHHHHHhhcCCceecCCCCCCCHHHHHhcC--CCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccC-----ccC
Q psy7088 40 ATARAAGMMDAIMILSLMSTTSLEEVRAQN--PSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTA-----VLG 112 (873)
Q Consensus 40 a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~--p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtP-----v~G 112 (873)
.+.+-+...++|..++ .+-.|+|++...- +-...-.=-...+|++...+++++.. +.+++.+|.. ..|
T Consensus 66 ~i~~i~~~~~~pv~vg-GGirs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~----~~i~vsld~~~~~v~~~G 140 (241)
T PRK14024 66 LLAEVVGKLDVKVELS-GGIRDDESLEAALATGCARVNIGTAALENPEWCARVIAEHG----DRVAVGLDVRGHTLAARG 140 (241)
T ss_pred HHHHHHHHcCCCEEEc-CCCCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhh----hhEEEEEEEeccEeccCC
Confidence 4445556667888775 4557889987532 21111112224578999888888763 3477777762 134
Q ss_pred cccccccccccccccccCcchh------hhhhccCCCCCHHHHHHHHHhcCCccchhhhhhhhhhhhhh
Q psy7088 113 SRYHISKFRDISAEECSSGLTD------YVANQFDDSVDWDDVRSLVQATKLPIVCKDSLQQCCDLSQL 175 (873)
Q Consensus 113 ~RErd~~f~~~~~~~~~~~~~~------~v~~~~d~sltWeDL~wLR~~t~lPl~lkgtl~~~~dls~L 175 (873)
|.+.......+.......+... .......+ .+|+-++.+++.++.|+...|=+...-|+..+
T Consensus 141 w~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G-~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l 208 (241)
T PRK14024 141 WTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTG-PNLELLREVCARTDAPVVASGGVSSLDDLRAL 208 (241)
T ss_pred eeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHH
Confidence 4432111000000000000000 00111223 48999999999999999999999998888655
No 80
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=33.23 E-value=1.5e+02 Score=32.72 Aligned_cols=85 Identities=12% Similarity=0.019 Sum_probs=56.5
Q ss_pred CcceechhhhhhcCCChhHHHHHHHHhhcCCcee--cCC---CCCCCHHHHH-------hc-CCCCceEEEEEeeCCHHH
Q psy7088 20 CPVGIAPSAMQKLAHADGEVATARAAGMMDAIMI--LSL---MSTTSLEEVR-------AQ-NPSTTLWLQMYIFKDRAL 86 (873)
Q Consensus 20 ~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~--LSt---~Ss~SlEeIa-------aa-~p~g~~WFQLY~~~Dr~~ 86 (873)
.|..+.|.--.+-.+.++=..+++-..+.|+--+ .+| +.+.|.||-. ++ .+.-+...++- .+-..
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~--~~t~~ 82 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG--YGTAT 82 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC--CCHHH
Confidence 3566777655555566666788888888887544 333 2355776653 22 23345555653 36777
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q psy7088 87 SLQMVQRAERSGYSAIVITM 106 (873)
Q Consensus 87 ~~~LL~RAe~AG~kALvvTV 106 (873)
+.++.++|+++|++++++.-
T Consensus 83 ~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 83 AIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHHHhCCCEEEECC
Confidence 88999999999999998843
No 81
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.28 E-value=1.4e+02 Score=31.62 Aligned_cols=129 Identities=13% Similarity=0.196 Sum_probs=70.4
Q ss_pred HHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe----eCCHHHHHHHHHHHHHcCCcEEEEeeccC-----c
Q psy7088 40 ATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI----FKDRALSLQMVQRAERSGYSAIVITMDTA-----V 110 (873)
Q Consensus 40 a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~----~~Dr~~~~~LL~RAe~AG~kALvvTVDtP-----v 110 (873)
.+.+.|++.++|.++ .....++|++..+..-|.. .+.+ .+|.+...++ ++..|.+.+++.+|+- +
T Consensus 67 ~i~~i~~~~~~~l~v-~GGi~~~~~~~~~~~~Ga~--~v~iGs~~~~~~~~~~~i---~~~~g~~~i~~sid~~~~~v~~ 140 (241)
T PRK13585 67 AIEKIIEAVGVPVQL-GGGIRSAEDAASLLDLGVD--RVILGTAAVENPEIVREL---SEEFGSERVMVSLDAKDGEVVI 140 (241)
T ss_pred HHHHHHHHcCCcEEE-cCCcCCHHHHHHHHHcCCC--EEEEChHHhhChHHHHHH---HHHhCCCcEEEEEEeeCCEEEE
Confidence 667778888999999 4555678887543111111 1222 2344443333 3335778899999952 2
Q ss_pred cCcccccc-cccccccccccCcchh--h--h-hhccCCCCCHHHHHHHHHhcCCccchhhhhhhhhhhhh
Q psy7088 111 LGSRYHIS-KFRDISAEECSSGLTD--Y--V-ANQFDDSVDWDDVRSLVQATKLPIVCKDSLQQCCDLSQ 174 (873)
Q Consensus 111 ~G~RErd~-~f~~~~~~~~~~~~~~--~--v-~~~~d~sltWeDL~wLR~~t~lPl~lkgtl~~~~dls~ 174 (873)
.|+++... ....+.......+... . . ........+|+-++.+++.++.|+...|=++...|+..
T Consensus 141 ~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~ 210 (241)
T PRK13585 141 KGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRA 210 (241)
T ss_pred CCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHH
Confidence 34433210 0000000000000000 0 0 00011336899999999999999999999998888855
No 82
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=32.25 E-value=1.5e+02 Score=34.10 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=39.2
Q ss_pred ChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEeeCCH---------------HHHHHHHHHHHHcCC
Q psy7088 35 ADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDR---------------ALSLQMVQRAERSGY 99 (873)
Q Consensus 35 pdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~~Dr---------------~~~~~LL~RAe~AG~ 99 (873)
.+.|....++..+.|....+.+++.+..++|..+...+..|+.++.+.++ +.+.+.++.|++.|.
T Consensus 51 ~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~ 130 (378)
T PRK11858 51 SEDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGL 130 (378)
T ss_pred ChHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34455555555556665555556555566665544345567777766443 344556677777776
Q ss_pred cE
Q psy7088 100 SA 101 (873)
Q Consensus 100 kA 101 (873)
+.
T Consensus 131 ~v 132 (378)
T PRK11858 131 YV 132 (378)
T ss_pred eE
Confidence 54
No 83
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=32.19 E-value=1.4e+02 Score=28.44 Aligned_cols=57 Identities=18% Similarity=0.397 Sum_probs=42.3
Q ss_pred CCceecCCCCCCCHHHHHhcCCC----------CceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEe
Q psy7088 49 DAIMILSLMSTTSLEEVRAQNPS----------TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 105 (873)
Q Consensus 49 Gip~~LSt~Ss~SlEeIaaa~p~----------g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvT 105 (873)
+-.++.=+.....+|++.+..|+ ..-|+-+...-+++...+++.+-+++|++.|.++
T Consensus 28 ~~~~v~~Nvp~~~l~~v~~ilPg~~~PTVs~l~~~~w~AV~~vv~~~~v~~~~~~Lk~~GA~~Ilv~ 94 (100)
T TIGR03455 28 GKVLLMMNVPRDNLDEVRALLPGLEGPTVSPLADEGWVAVHAVVDEKVVNELIDKLKAAGARDILVL 94 (100)
T ss_pred heeEEEEeCChhhHHHHHHhcCCCCCCCcCcCCCCCeEEEEEEEcHHHHHHHHHHHHHcCCCeEEEe
Confidence 34444446667777877664321 1358888888899999999999999999998875
No 84
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=31.94 E-value=1.2e+02 Score=27.37 Aligned_cols=57 Identities=26% Similarity=0.222 Sum_probs=39.2
Q ss_pred CCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccC
Q psy7088 33 AHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLG 112 (873)
Q Consensus 33 ~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G 112 (873)
-|.|||+ +|+.+...|+-.+-.+.+ .......+++++..+ .|+ .+++|.|.|-.+
T Consensus 18 ~s~DGe~-ia~~~~~~G~~~iRGSs~----------------------rgg~~Alr~~~~~lk-~G~-~~~itpDGPrGP 72 (74)
T PF04028_consen 18 RSRDGEL-IARVLERFGFRTIRGSSS----------------------RGGARALREMLRALK-EGY-SIAITPDGPRGP 72 (74)
T ss_pred cCcCHHH-HHHHHHHcCCCeEEeCCC----------------------CcHHHHHHHHHHHHH-CCC-eEEEeCCCCCCC
Confidence 3788887 577888888887776511 112345667777776 676 779999999776
Q ss_pred cc
Q psy7088 113 SR 114 (873)
Q Consensus 113 ~R 114 (873)
.|
T Consensus 73 ~r 74 (74)
T PF04028_consen 73 RR 74 (74)
T ss_pred CC
Confidence 54
No 85
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=31.33 E-value=1.8e+02 Score=32.75 Aligned_cols=122 Identities=12% Similarity=0.080 Sum_probs=71.1
Q ss_pred CcceechhhhhhcCCChhHHHHHHHHhhcC-CceecC----C-C---CCCCHHHHH-------hcCCCCceEEEEEeeCC
Q psy7088 20 CPVGIAPSAMQKLAHADGEVATARAAGMMD-AIMILS----L-M---STTSLEEVR-------AQNPSTTLWLQMYIFKD 83 (873)
Q Consensus 20 ~PI~IAPtG~~~L~hpdGE~a~ARAAa~aG-ip~~LS----t-~---Ss~SlEeIa-------aa~p~g~~WFQLY~~~D 83 (873)
||+++||+++. .+.+.-+.|.+.| .-.+.| . . ......++. ....+.+.-.||. -.|
T Consensus 1 ~~~~lAPMag~------td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g~~ 73 (312)
T PRK10550 1 MRVLLAPMEGV------LDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-GQY 73 (312)
T ss_pred CCeEEECCCCC------cCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-cCC
Confidence 68999998754 3566666667666 333333 1 1 111222222 1122457888985 577
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcC--Cccc
Q psy7088 84 RALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATK--LPIV 161 (873)
Q Consensus 84 r~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~--lPl~ 161 (873)
.+...+-.++++++||+.|=+..-+|..- .. ..+.+..+ ..++.+--+=++.+|+.++ .|+.
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~~-------v~-------~~g~Gs~L--l~~~~~~~eiv~avr~~~~~~~pVs 137 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSKT-------VN-------GSGGGATL--LKDPELIYQGAKAMREAVPAHLPVT 137 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCchH-------Hh-------cCCCchHh--hcCHHHHHHHHHHHHHhcCCCcceE
Confidence 78788888999999999988888887531 00 00111000 1123333345677788874 7888
Q ss_pred hhh
Q psy7088 162 CKD 164 (873)
Q Consensus 162 lkg 164 (873)
+|=
T Consensus 138 vKi 140 (312)
T PRK10550 138 VKV 140 (312)
T ss_pred EEE
Confidence 883
No 86
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=31.01 E-value=93 Score=33.07 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCCcEEEEeeccCccC
Q psy7088 88 LQMVQRAERSGYSAIVITMDTAVLG 112 (873)
Q Consensus 88 ~~LL~RAe~AG~kALvvTVDtPv~G 112 (873)
+++++.+.+.|+++++++||+..++
T Consensus 125 ~el~~~~~~~G~~~~i~~v~~~~l~ 149 (218)
T TIGR03679 125 EEYLRELVERGFRFIIVSVSAYGLD 149 (218)
T ss_pred HHHHHHHHHCCCEEEEEEEecCCCC
Confidence 3578899999999999999987655
No 87
>KOG2335|consensus
Probab=30.46 E-value=2.1e+02 Score=33.18 Aligned_cols=33 Identities=12% Similarity=0.525 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHhcC-Cccchhhhhhhhhhhh
Q psy7088 141 DDSVDWDDVRSLVQATK-LPIVCKDSLQQCCDLS 173 (873)
Q Consensus 141 d~sltWeDL~wLR~~t~-lPl~lkgtl~~~~dls 173 (873)
.+.++|+.|+.+|+..+ +|+...|-+....|..
T Consensus 186 ~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~ 219 (358)
T KOG2335|consen 186 TGPADWEAIKAVRENVPDIPVIANGNILSLEDVE 219 (358)
T ss_pred CCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHH
Confidence 46789999999999988 9999999998877763
No 88
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=29.26 E-value=1.2e+02 Score=32.95 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHhcC-Cccchhhhhhhhhhh
Q psy7088 144 VDWDDVRSLVQATK-LPIVCKDSLQQCCDL 172 (873)
Q Consensus 144 ltWeDL~wLR~~t~-lPl~lkgtl~~~~dl 172 (873)
.+|+-|+.+++..+ .|++-.|=+...-|-
T Consensus 177 a~~~~I~~i~~~~~~ipIIgNGgI~s~eda 206 (231)
T TIGR00736 177 ADMDLLKILSEEFNDKIIIGNNSIDDIESA 206 (231)
T ss_pred hhHHHHHHHHHhcCCCcEEEECCcCCHHHH
Confidence 57999999999985 999988877776665
No 89
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.23 E-value=71 Score=35.32 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=51.9
Q ss_pred CCceEEEEEeeCCHHHHHHHHHHHHHc-CCcEEEEeeccCccCccccc-cccc-ccccccccCcchhhhhhccCCCCCHH
Q psy7088 71 STTLWLQMYIFKDRALSLQMVQRAERS-GYSAIVITMDTAVLGSRYHI-SKFR-DISAEECSSGLTDYVANQFDDSVDWD 147 (873)
Q Consensus 71 ~g~~WFQLY~~~Dr~~~~~LL~RAe~A-G~kALvvTVDtPv~G~RErd-~~f~-~~~~~~~~~~~~~~v~~~~d~sltWe 147 (873)
.|-+.|.+.+..+.+...+.++..+++ | .+-+.||+.. |+-..+ .++. .+.. .+ ..++...+ +.-+|+
T Consensus 148 ~Gf~~iKik~g~~~~~d~~~v~~lr~~~g--~~~l~vD~n~-~~~~~~A~~~~~~l~~----~~-l~~iEeP~-~~~d~~ 218 (316)
T cd03319 148 RGFPLLKIKLGGDLEDDIERIRAIREAAP--DARLRVDANQ-GWTPEEAVELLRELAE----LG-VELIEQPV-PAGDDD 218 (316)
T ss_pred cCCCEEEEEeCCChhhHHHHHHHHHHhCC--CCeEEEeCCC-CcCHHHHHHHHHHHHh----cC-CCEEECCC-CCCCHH
Confidence 355677776655555556667666653 6 3457777642 222211 0110 0000 00 01121112 235799
Q ss_pred HHHHHHHhcCCccchhhhhhhhhhh
Q psy7088 148 DVRSLVQATKLPIVCKDSLQQCCDL 172 (873)
Q Consensus 148 DL~wLR~~t~lPl~lkgtl~~~~dl 172 (873)
.+++|++.++.||...+.+...-|+
T Consensus 219 ~~~~L~~~~~ipIa~~E~~~~~~~~ 243 (316)
T cd03319 219 GLAYLRDKSPLPIMADESCFSAADA 243 (316)
T ss_pred HHHHHHhcCCCCEEEeCCCCCHHHH
Confidence 9999999999999999987665553
No 90
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=28.40 E-value=1.7e+02 Score=33.48 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCcE--EEE--eecc-CccCc
Q psy7088 39 VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSA--IVI--TMDT-AVLGS 113 (873)
Q Consensus 39 ~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kA--Lvv--TVDt-Pv~G~ 113 (873)
..+.+++++.|.|+++||.. .+++||..+ ++..+++|.+. |++ .+-. |..
T Consensus 123 ~pLL~~~A~~gkPvilStGm-atl~Ei~~A----------------------v~~i~~~G~~~~~i~llhC~s~YP~~-- 177 (329)
T TIGR03569 123 APLLKKIARFGKPVILSTGM-ATLEEIEAA----------------------VGVLRDAGTPDSNITLLHCTTEYPAP-- 177 (329)
T ss_pred HHHHHHHHhcCCcEEEECCC-CCHHHHHHH----------------------HHHHHHcCCCcCcEEEEEECCCCCCC--
Q ss_pred ccccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhh
Q psy7088 114 RYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKD 164 (873)
Q Consensus 114 RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkg 164 (873)
...++..-|.+||+.+++|+.+++
T Consensus 178 ---------------------------~~~~nL~~I~~Lk~~f~~pVG~Sd 201 (329)
T TIGR03569 178 ---------------------------FEDVNLNAMDTLKEAFDLPVGYSD 201 (329)
T ss_pred ---------------------------cccCCHHHHHHHHHHhCCCEEECC
No 91
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=28.37 E-value=1.8e+02 Score=33.51 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=52.5
Q ss_pred HHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccc
Q psy7088 39 VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHIS 118 (873)
Q Consensus 39 ~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~ 118 (873)
..+.+++++.|.|.++|+.-..+++|+..+. +...+.|-+-|+++== |.+.
T Consensus 215 ~~LL~~~a~~gkPVilk~G~~~t~~e~~~Av----------------------e~i~~~Gn~~i~L~er----g~s~--- 265 (360)
T PRK12595 215 FELLKAAGRVNKPVLLKRGLSATIEEFIYAA----------------------EYIMSQGNGQIILCER----GIRT--- 265 (360)
T ss_pred HHHHHHHHccCCcEEEeCCCCCCHHHHHHHH----------------------HHHHHCCCCCEEEECC----ccCC---
Confidence 4677888888888888887777888886553 3345667766665421 1110
Q ss_pred cccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhh
Q psy7088 119 KFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKD 164 (873)
Q Consensus 119 ~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkg 164 (873)
|. ......++|.-|..+|+.+++|+.+..
T Consensus 266 -yp----------------~~~~~~ldl~~i~~lk~~~~~PV~~d~ 294 (360)
T PRK12595 266 -YE----------------KATRNTLDISAVPILKQETHLPVMVDV 294 (360)
T ss_pred -CC----------------CCCCCCcCHHHHHHHHHHhCCCEEEeC
Confidence 10 001234799999999999999998843
No 92
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=28.27 E-value=46 Score=30.08 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=37.3
Q ss_pred eecCCCCCCCHHHHHhcCC----------CCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEe
Q psy7088 52 MILSLMSTTSLEEVRAQNP----------STTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 105 (873)
Q Consensus 52 ~~LSt~Ss~SlEeIaaa~p----------~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvT 105 (873)
++.=+....++|++.+..| .+.-|+=+...=+++...+++++.+++|++.|+++
T Consensus 7 ~l~~Nvp~~~l~~v~~ilPg~~~PTVs~L~~~~w~AV~~vV~~~~~~~~~~~Lk~~GA~~Ilv~ 70 (75)
T PF08029_consen 7 LLMMNVPRESLEEVIKILPGLKSPTVSPLADEDWVAVHAVVPEKQVWDLMDKLKAAGASDILVL 70 (75)
T ss_dssp EEEEEEECCCHHHHHHHS--SSS-EEEE-SSTTEEEEEEEEECCCHHHHHHHHHCTT-EEEEEE
T ss_pred EEEEeCCHHHHHHHHHhCCCCCCCceeecCCCCEEEEEEEecHHHHHHHHHHHHHcCCCEEEEE
Confidence 3344555678888876544 12456666665667788899999999999998875
No 93
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.25 E-value=12 Score=34.92 Aligned_cols=16 Identities=56% Similarity=1.107 Sum_probs=13.7
Q ss_pred hhhhhhHHHHhhhhcc
Q psy7088 171 DLSQLWYREFYLEMTM 186 (873)
Q Consensus 171 dls~LwfrEfyLe~~~ 186 (873)
|-+.|||||.|||...
T Consensus 42 dstdLwYre~~le~vd 57 (97)
T COG4014 42 DSTDLWYREHYLEVVD 57 (97)
T ss_pred ecCCceecccceeeec
Confidence 4468999999999885
No 94
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=27.99 E-value=2.1e+02 Score=31.38 Aligned_cols=86 Identities=9% Similarity=-0.014 Sum_probs=55.7
Q ss_pred CcceechhhhhhcCCChhHHHHHHHHhhcCCceec--CCC---CCCCHHHHH-------hcCC-CCceEEEEEeeCCHHH
Q psy7088 20 CPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL--SLM---STTSLEEVR-------AQNP-STTLWLQMYIFKDRAL 86 (873)
Q Consensus 20 ~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~L--St~---Ss~SlEeIa-------aa~p-~g~~WFQLY~~~Dr~~ 86 (873)
.|..+.|.--.+-.+.++=...++-..+.|+--++ ++. .+.|.||-. ++.+ ..+.+.++- ..+-+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG-SNSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecC-CchHHH
Confidence 46677776555555666667788888888875443 333 355666542 3333 234444432 236678
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q psy7088 87 SLQMVQRAERSGYSAIVITM 106 (873)
Q Consensus 87 ~~~LL~RAe~AG~kALvvTV 106 (873)
+.++.+.|+++|++++++.-
T Consensus 85 ~i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVT 104 (292)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 88999999999999999973
No 95
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=26.70 E-value=1.6e+02 Score=31.90 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=39.9
Q ss_pred HHHHHHHhhcCCceecC-CCCC----CCHHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccC
Q psy7088 39 VATARAAGMMDAIMILS-LMST----TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLG 112 (873)
Q Consensus 39 ~a~ARAAa~aGip~~LS-t~Ss----~SlEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G 112 (873)
..+.++..+.|+-.+++ ...+ .-+|.+++..+= ...+.| +.+|+ ++++++.-++|++|+++.||+..++
T Consensus 75 e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~lgl-~~~~PL-W~~~~---~~ll~e~i~~G~~aiIv~v~a~gL~ 148 (223)
T TIGR00290 75 EELKGILHTLDVEAVVFGAIYSEYQKTRIERVCRELGL-KSFAPL-WHRDP---EKLMEEFVEEKFEARIIAVAAEGLD 148 (223)
T ss_pred HHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHhcCC-EEeccc-cCCCH---HHHHHHHHHcCCeEEEEEEecCCCC
Confidence 45555556667655543 2222 345566555431 112222 12343 3578888899999999999997665
No 96
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=26.23 E-value=2.9e+02 Score=30.81 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=76.3
Q ss_pred ccCCcceechhhhhhcCCChh-H--H-HHHHHHhhcC-CceecCCCCCCCHHHHHhcCCCCceEEEEEeeC-----CHHH
Q psy7088 17 RYRCPVGIAPSAMQKLAHADG-E--V-ATARAAGMMD-AIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFK-----DRAL 86 (873)
Q Consensus 17 ~ls~PI~IAPtG~~~L~hpdG-E--~-a~ARAAa~aG-ip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~~-----Dr~~ 86 (873)
+...|+++.-.-.+ +-+.+| + . .+..+|.+++ +|.++=.--..++|.|..+...|..+.|+=-.. +-+.
T Consensus 38 ~~~~PvIl~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~ 116 (282)
T TIGR01859 38 EENSPVIIQVSEGA-IKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLAL 116 (282)
T ss_pred HhCCCEEEEcCcch-hhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHH
Confidence 45678877543322 222221 2 2 3344566677 888886443457888877655566677764221 2356
Q ss_pred HHHHHHHHHHcCCcEEEEeeccCccCcccc----ccccccccc----------ccccCcchhhhhh-ccCCCCCHHHHHH
Q psy7088 87 SLQMVQRAERSGYSAIVITMDTAVLGSRYH----ISKFRDISA----------EECSSGLTDYVAN-QFDDSVDWDDVRS 151 (873)
Q Consensus 87 ~~~LL~RAe~AG~kALvvTVDtPv~G~REr----d~~f~~~~~----------~~~~~~~~~~v~~-~~d~sltWeDL~w 151 (873)
++++++.|++.|+. +-.=+.+ +.|.-+. ...+.++.. +.-..+.+...+. ...+.++++-|+.
T Consensus 117 t~~v~~~a~~~gv~-Ve~ElG~-~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~ 194 (282)
T TIGR01859 117 TKKVVEIAHAKGVS-VEAELGT-LGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKE 194 (282)
T ss_pred HHHHHHHHHHcCCE-EEEeeCC-CcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHH
Confidence 77888888888863 3333322 1121110 001111100 0000001110000 0136799999999
Q ss_pred HHHhcCCccchhh
Q psy7088 152 LVQATKLPIVCKD 164 (873)
Q Consensus 152 LR~~t~lPl~lkg 164 (873)
+++..+.||++-|
T Consensus 195 i~~~~~iPlv~hG 207 (282)
T TIGR01859 195 IKELTNIPLVLHG 207 (282)
T ss_pred HHHHhCCCEEEEC
Confidence 9999999999888
No 97
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=26.11 E-value=1.4e+02 Score=31.39 Aligned_cols=127 Identities=16% Similarity=0.145 Sum_probs=68.2
Q ss_pred HHHhhcCCceecCCCCCCCHHHHHhcCCCCc-e-EEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCc-----cCccc
Q psy7088 43 RAAGMMDAIMILSLMSTTSLEEVRAQNPSTT-L-WLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAV-----LGSRY 115 (873)
Q Consensus 43 RAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~-~-WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv-----~G~RE 115 (873)
+.++..++|.++ .....++|++......|. . .+=-....+++..++++++. -+.+++.+|... .|+++
T Consensus 68 ~i~~~~~~pv~~-~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~----~~~i~vsid~k~~~v~~~g~~~ 142 (233)
T PRK00748 68 AIVKAVDIPVQV-GGGIRSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKF----PGKIVVGLDARDGKVATDGWLE 142 (233)
T ss_pred HHHHHCCCCEEE-cCCcCCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHh----CCCceeeeeccCCEEEEccCee
Confidence 344456788777 455678999865321111 1 11111235666776666654 234788888642 56554
Q ss_pred cc-ccccccccccccCcchh------hhhhccCCCCCHHHHHHHHHhcCCccchhhhhhhhhhhhhh
Q psy7088 116 HI-SKFRDISAEECSSGLTD------YVANQFDDSVDWDDVRSLVQATKLPIVCKDSLQQCCDLSQL 175 (873)
Q Consensus 116 rd-~~f~~~~~~~~~~~~~~------~v~~~~d~sltWeDL~wLR~~t~lPl~lkgtl~~~~dls~L 175 (873)
.. .............+... ........ .+|+-++.+++.++.|++..|=+....|+-.+
T Consensus 143 ~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~ 208 (233)
T PRK00748 143 TSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAVPIPVIASGGVSSLDDIKAL 208 (233)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHH
Confidence 31 11000000000000000 00011122 68999999999999999999988888887543
No 98
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=26.07 E-value=1.1e+02 Score=34.50 Aligned_cols=32 Identities=13% Similarity=0.423 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHhcCCccchhhhhhhhhhhh
Q psy7088 142 DSVDWDDVRSLVQATKLPIVCKDSLQQCCDLS 173 (873)
Q Consensus 142 ~sltWeDL~wLR~~t~lPl~lkgtl~~~~dls 173 (873)
+..+|+-++.+++.++.|++..|=+....|..
T Consensus 179 G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~ 210 (321)
T PRK10415 179 GEAEYDSIRAVKQKVSIPVIANGDITDPLKAR 210 (321)
T ss_pred CCcChHHHHHHHHhcCCcEEEeCCCCCHHHHH
Confidence 34589999999999999999999888776663
No 99
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.98 E-value=99 Score=34.05 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=51.1
Q ss_pred echhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCc
Q psy7088 24 IAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYS 100 (873)
Q Consensus 24 IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~k 100 (873)
-+|-+++++.- +|=..+.++|.+.|++++.+-+...+++.+++.. -++|+ ..-.-....+++.+.+.|-.
T Consensus 55 ts~~sf~G~G~-~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~v----dilqI--gs~~~~n~~LL~~va~tgkP 124 (250)
T PRK13397 55 TSAASFQGLGL-QGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDYL----DVIQV--GARNMQNFEFLKTLSHIDKP 124 (250)
T ss_pred CCCcccCCCCH-HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhcC----CEEEE--CcccccCHHHHHHHHccCCe
Confidence 36788888753 5778999999999999999999999999997742 35564 32222336778888776643
No 100
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=25.52 E-value=1e+02 Score=34.10 Aligned_cols=25 Identities=4% Similarity=0.162 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCcEEEEeeccCc
Q psy7088 86 LSLQMVQRAERSGYSAIVITMDTAV 110 (873)
Q Consensus 86 ~~~~LL~RAe~AG~kALvvTVDtPv 110 (873)
.+.+++++|+++|.+..+.|||.+.
T Consensus 249 ~~~~~v~~~~~~G~~v~vWTVNd~~ 273 (300)
T cd08612 249 MRPSLFRHLQKRGIQVYGWVLNDEE 273 (300)
T ss_pred CCHHHHHHHHHCCCEEEEeecCCHH
Confidence 4678999999999999999999753
No 101
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=25.07 E-value=2.1e+02 Score=30.85 Aligned_cols=67 Identities=10% Similarity=0.133 Sum_probs=36.4
Q ss_pred HHHHHHhhcCCceecCC-CCC----CCHHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccC
Q psy7088 40 ATARAAGMMDAIMILSL-MST----TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLG 112 (873)
Q Consensus 40 a~ARAAa~aGip~~LSt-~Ss----~SlEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G 112 (873)
.+.++..+.|+-.+++. ..+ .-+|.+++..+= ...+.| |.+|++. +++ --++|++|+++.||+..++
T Consensus 76 ~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~vc~~~gl-~~~~PL-W~~d~~~---l~e-~i~~Gf~aiIv~v~~~gL~ 147 (222)
T TIGR00289 76 DLAGQLGELDVEALCIGAIESNYQKSRIDKVCRELGL-KSIAPL-WHADPEK---LMY-EVAEKFEVIIVSVSAMGLD 147 (222)
T ss_pred HHHHHHHHcCCCEEEECccccHHHHHHHHHHHHHcCC-EEeccc-cCCCHHH---HHH-HHHcCCeEEEEEEccCCCC
Confidence 44455555565544432 111 345566555431 122222 2355543 333 3379999999999987765
No 102
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=24.80 E-value=1.1e+02 Score=35.16 Aligned_cols=128 Identities=14% Similarity=0.190 Sum_probs=69.8
Q ss_pred hhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeec
Q psy7088 28 AMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMD 107 (873)
Q Consensus 28 G~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVD 107 (873)
+.+++. .+|=..+.++|.+.|++++.+-+...+++.+++.. -|+|+ ..-.-....+++.+-+.|-..++=|==
T Consensus 137 sf~G~g-~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~v----d~lqI--gAr~~~N~~LL~~va~~~kPViLk~G~ 209 (335)
T PRK08673 137 SFQGLG-EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEYV----DILQI--GARNMQNFDLLKEVGKTNKPVLLKRGM 209 (335)
T ss_pred cccccc-HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhC----CeEEE--CcccccCHHHHHHHHcCCCcEEEeCCC
Confidence 334442 34456788999999999999999999999998763 36665 332233457788887766644332211
Q ss_pred cCccC-cccccccccccccc---cccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchh
Q psy7088 108 TAVLG-SRYHISKFRDISAE---ECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCK 163 (873)
Q Consensus 108 tPv~G-~RErd~~f~~~~~~---~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lk 163 (873)
..... +......+...... ..-.|...+ .......+++.-+..+|+.+++|+++.
T Consensus 210 ~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf-~~~~~~~ldl~ai~~lk~~~~lPVi~d 268 (335)
T PRK08673 210 SATIEEWLMAAEYILAEGNPNVILCERGIRTF-ETATRNTLDLSAVPVIKKLTHLPVIVD 268 (335)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEECCCCCC-CCcChhhhhHHHHHHHHHhcCCCEEEe
Confidence 10000 00000000000000 000011111 112245688899999999999998554
No 103
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=24.77 E-value=1.5e+02 Score=32.13 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCcEEEEeeccCcc
Q psy7088 86 LSLQMVQRAERSGYSAIVITMDTAVL 111 (873)
Q Consensus 86 ~~~~LL~RAe~AG~kALvvTVDtPv~ 111 (873)
.+.+++++++++|.+..+.|||.+..
T Consensus 216 ~~~~~v~~~~~~G~~v~vWTVn~~~~ 241 (258)
T cd08573 216 ISSAYVRYWRARGIRVIAWTVNTPTE 241 (258)
T ss_pred cCHHHHHHHHHCCCEEEEEecCCHHH
Confidence 46788899999999999999987543
No 104
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=24.72 E-value=1.1e+02 Score=33.03 Aligned_cols=95 Identities=19% Similarity=0.191 Sum_probs=50.2
Q ss_pred CCceEEEEEeeCCHHHHHHHHHHHHHc-CCcEEEEeeccCccCccccccccc-ccccccccCcchhhhhhccCCCCCHHH
Q psy7088 71 STTLWLQMYIFKDRALSLQMVQRAERS-GYSAIVITMDTAVLGSRYHISKFR-DISAEECSSGLTDYVANQFDDSVDWDD 148 (873)
Q Consensus 71 ~g~~WFQLY~~~Dr~~~~~LL~RAe~A-G~kALvvTVDtPv~G~RErd~~f~-~~~~~~~~~~~~~~v~~~~d~sltWeD 148 (873)
.|.+.|.+-+..+.+...+.++..+++ |-+ +-+.||+...-..+.-.+|- .+.. .++ .++... -+.-+|+.
T Consensus 99 ~G~~~~KiKvg~~~~~d~~~v~~vr~~~g~~-~~l~vDan~~~~~~~a~~~~~~l~~----~~i-~~iEeP-~~~~d~~~ 171 (265)
T cd03315 99 AGFRTFKLKVGRDPARDVAVVAALREAVGDD-AELRVDANRGWTPKQAIRALRALED----LGL-DYVEQP-LPADDLEG 171 (265)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHHhcCCC-CEEEEeCCCCcCHHHHHHHHHHHHh----cCC-CEEECC-CCcccHHH
Confidence 345666666655555555666666654 433 35677764221111000110 0000 000 111111 12347899
Q ss_pred HHHHHHhcCCccchhhhhhhhhhh
Q psy7088 149 VRSLVQATKLPIVCKDSLQQCCDL 172 (873)
Q Consensus 149 L~wLR~~t~lPl~lkgtl~~~~dl 172 (873)
++.|++.++.|+...+.+....|+
T Consensus 172 ~~~l~~~~~ipia~dE~~~~~~~~ 195 (265)
T cd03315 172 RAALARATDTPIMADESAFTPHDA 195 (265)
T ss_pred HHHHHhhCCCCEEECCCCCCHHHH
Confidence 999999999999999887766665
No 105
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=24.38 E-value=4.9e+02 Score=29.65 Aligned_cols=41 Identities=32% Similarity=0.452 Sum_probs=29.7
Q ss_pred CCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCce
Q psy7088 8 DSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIM 52 (873)
Q Consensus 8 DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~ 52 (873)
+++|+++|.++.-|+++|. +....+||...+.++..+|-..
T Consensus 1 ~l~~~~~Gl~f~NPl~lAa----G~~~~~~~~~~~~~~~g~G~i~ 41 (310)
T COG0167 1 DLSTEILGLKFPNPLGLAA----GFDGKNGEELDALAALGFGAIV 41 (310)
T ss_pred CCceeecceecCCCCeEcc----cCCccCHHHHHHHHhcCCceEE
Confidence 5789999999999999875 3322467777777666665544
No 106
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=24.29 E-value=2.5e+02 Score=31.18 Aligned_cols=147 Identities=12% Similarity=0.065 Sum_probs=80.5
Q ss_pred CcceechhhhhhcCCChhHHHHHHHHhhcCCceec--CC---CCCCCHHHHH-------hcC-CCCceEEEEEeeCCHHH
Q psy7088 20 CPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL--SL---MSTTSLEEVR-------AQN-PSTTLWLQMYIFKDRAL 86 (873)
Q Consensus 20 ~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~L--St---~Ss~SlEeIa-------aa~-p~g~~WFQLY~~~Dr~~ 86 (873)
.|..+.|.--.+=.+.++=...++-..+.|+--++ +| +.+.|.||-. ++. +..+....+- .+-..
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~--~~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG--GGTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--CCHHH
Confidence 46777787655555666667778888888875443 33 3355666542 233 3345555653 36677
Q ss_pred HHHHHHHHHHcCCcEEEEeeccCccCcccccc----cccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCccch
Q psy7088 87 SLQMVQRAERSGYSAIVITMDTAVLGSRYHIS----KFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVC 162 (873)
Q Consensus 87 ~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~----~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~l 162 (873)
+.+++++|+++|+.++++.-- .. .+..+. .|+.+.... ...+ .+.....-.++++.+..|.+.-+ ++
T Consensus 90 ~i~~~~~a~~~Gadav~~~pP--~y-~~~~~~~i~~~f~~va~~~-~lpi--~lYn~~g~~l~~~~l~~L~~~~p---ni 160 (303)
T PRK03620 90 AIEYAQAAERAGADGILLLPP--YL-TEAPQEGLAAHVEAVCKST-DLGV--IVYNRDNAVLTADTLARLAERCP---NL 160 (303)
T ss_pred HHHHHHHHHHhCCCEEEECCC--CC-CCCCHHHHHHHHHHHHHhC-CCCE--EEEcCCCCCCCHHHHHHHHhhCC---CE
Confidence 889999999999999988542 21 121110 122211100 0000 11111123578899998875544 34
Q ss_pred hhhhhhhhhhhhhhHHH
Q psy7088 163 KDSLQQCCDLSQLWYRE 179 (873)
Q Consensus 163 kgtl~~~~dls~LwfrE 179 (873)
.|+=..+.|+ .++++
T Consensus 161 ~giK~s~~d~--~~~~~ 175 (303)
T PRK03620 161 VGFKDGVGDI--ELMQR 175 (303)
T ss_pred EEEEeCCCCH--HHHHH
Confidence 4443446665 34444
No 107
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=24.19 E-value=3e+02 Score=31.25 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=51.8
Q ss_pred CceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHH
Q psy7088 72 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRS 151 (873)
Q Consensus 72 g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~w 151 (873)
-+.|.-|-+.-+.+.+.++.+.++++|+.+|+++=-+... . + +..........+.+ +. ......|+.++.
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~---~-~--~~~~~~~~~~gg~S---G~-~~~~~~l~~v~~ 281 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSR---D-G--LKGLPNADEAGGLS---GR-PLFERSTEVIRR 281 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcccc---c-c--ccccccCCCCCCcc---cH-HHHHHHHHHHHH
Confidence 4566666544455567888999999999998887543211 0 0 00000000000100 00 011257888999
Q ss_pred HHHhc--CCccchhhhhhhhhhh
Q psy7088 152 LVQAT--KLPIVCKDSLQQCCDL 172 (873)
Q Consensus 152 LR~~t--~lPl~lkgtl~~~~dl 172 (873)
+++.. +.||+-.|=+...-|.
T Consensus 282 l~~~~~~~ipIig~GGI~s~eda 304 (344)
T PRK05286 282 LYKELGGRLPIIGVGGIDSAEDA 304 (344)
T ss_pred HHHHhCCCCCEEEECCCCCHHHH
Confidence 99988 6788877766666555
No 108
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=24.08 E-value=1.9e+02 Score=33.02 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=50.4
Q ss_pred chhhhhhcCC--ChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEE
Q psy7088 25 APSAMQKLAH--ADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAI 102 (873)
Q Consensus 25 APtG~~~L~h--pdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kAL 102 (873)
+|++...+.| ..-+....-.+..+|+|.+.+++...+-+.|+.....+.+.+.... +....++|+++|+.++
T Consensus 78 ~~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~------~~~~A~~~~~~G~d~v 151 (336)
T COG2070 78 APVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVI------TVREALKAERAGADAV 151 (336)
T ss_pred ccchhheecccccchHHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeC------CHHHHHHHHhCCCCEE
Confidence 5677777766 3344455555566699999999887777777654333456656544 3455689999999876
Q ss_pred EE
Q psy7088 103 VI 104 (873)
Q Consensus 103 vv 104 (873)
|.
T Consensus 152 I~ 153 (336)
T COG2070 152 IA 153 (336)
T ss_pred Ee
Confidence 54
No 109
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=23.07 E-value=1.5e+02 Score=31.94 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhhh
Q psy7088 86 LSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDS 165 (873)
Q Consensus 86 ~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgt 165 (873)
...+++++++++|+..|.+| |...-| . .+..+|+-++.+++.++.|+...|=
T Consensus 156 ~~~~~~~~l~~~G~~~iivt-~i~~~g------~---------------------~~g~~~~~~~~i~~~~~ipvia~GG 207 (254)
T TIGR00735 156 DAVEWAKEVEKLGAGEILLT-SMDKDG------T---------------------KSGYDLELTKAVSEAVKIPVIASGG 207 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEe-CcCccc------C---------------------CCCCCHHHHHHHHHhCCCCEEEeCC
Confidence 45688899999999998887 211111 0 1335799999999999999999999
Q ss_pred hhhhhhhhhh
Q psy7088 166 LQQCCDLSQL 175 (873)
Q Consensus 166 l~~~~dls~L 175 (873)
++...|+..+
T Consensus 208 i~s~~di~~~ 217 (254)
T TIGR00735 208 AGKPEHFYEA 217 (254)
T ss_pred CCCHHHHHHH
Confidence 9988888654
No 110
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=22.89 E-value=2.1e+02 Score=32.30 Aligned_cols=120 Identities=14% Similarity=0.073 Sum_probs=0.0
Q ss_pred cceechhhhhhcCCChhHHHHHHHHhhcCC------ceecCCCCCCC--HHHHHhcCCCCceEEEEEeeCCHHHHHHHHH
Q psy7088 21 PVGIAPSAMQKLAHADGEVATARAAGMMDA------IMILSLMSTTS--LEEVRAQNPSTTLWLQMYIFKDRALSLQMVQ 92 (873)
Q Consensus 21 PI~IAPtG~~~L~hpdGE~a~ARAAa~aGi------p~~LSt~Ss~S--lEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~ 92 (873)
|+++||++.. .+...-+.|+..|. .|+.+..-... -+-+.....+.+.-.|| .-.|.+...+..+
T Consensus 2 ~~~lAPM~g~------Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl-~g~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDW------TDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQL-GGSDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCC------cCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEE-ccCCHHHHHHHHH
Q ss_pred HHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchh
Q psy7088 93 RAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCK 163 (873)
Q Consensus 93 RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lk 163 (873)
+++++||++|=+..-+|.. .....+.-..-..++.+.=+-++.+++.++.|+.+|
T Consensus 75 ~~~~~g~d~IDlN~GCP~~----------------~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvK 129 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSD----------------RVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVK 129 (318)
T ss_pred HHHhCCCCEEEEECCCCHH----------------HhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEE
No 111
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=22.66 E-value=1.3e+02 Score=33.13 Aligned_cols=128 Identities=16% Similarity=0.244 Sum_probs=68.3
Q ss_pred hhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEe
Q psy7088 26 PSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 105 (873)
Q Consensus 26 PtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvT 105 (873)
|.+..++. .+|=..+.+.|.+.|++++.+-+...+++.+++.. -|+|+ ..-.-....+++.+.+.|...++=|
T Consensus 69 ~~s~~G~g-~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~v----d~~kI--ga~~~~n~~LL~~~a~~gkPV~lk~ 141 (266)
T PRK13398 69 PYSFQGLG-EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADYA----DMLQI--GSRNMQNFELLKEVGKTKKPILLKR 141 (266)
T ss_pred CCccCCcH-HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHhC----CEEEE--CcccccCHHHHHHHhcCCCcEEEeC
Confidence 34444442 44556888889999999999888888999887653 36675 2222223467888766665443322
Q ss_pred eccCccCccccc---ccccccccc---cccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchh
Q psy7088 106 MDTAVLGSRYHI---SKFRDISAE---ECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCK 163 (873)
Q Consensus 106 VDtPv~G~RErd---~~f~~~~~~---~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lk 163 (873)
==.... .|.. ..+...... ....|. ..........+++.-+..+|+.+++|+.+.
T Consensus 142 G~~~s~--~e~~~A~e~i~~~Gn~~i~L~~rG~-~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D 202 (266)
T PRK13398 142 GMSATL--EEWLYAAEYIMSEGNENVVLCERGI-RTFETYTRNTLDLAAVAVIKELSHLPIIVD 202 (266)
T ss_pred CCCCCH--HHHHHHHHHHHhcCCCeEEEEECCC-CCCCCCCHHHHHHHHHHHHHhccCCCEEEe
Confidence 100000 0000 000000000 000010 001112234578888999999999998874
No 112
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=22.42 E-value=93 Score=26.38 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCcEEEEeec
Q psy7088 86 LSLQMVQRAERSGYSAIVITMD 107 (873)
Q Consensus 86 ~~~~LL~RAe~AG~kALvvTVD 107 (873)
..++++++|++.|++++++|==
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh 37 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDH 37 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeC
Confidence 3578999999999999999843
No 113
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=22.23 E-value=2.5e+02 Score=32.16 Aligned_cols=75 Identities=11% Similarity=0.130 Sum_probs=49.3
Q ss_pred CChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEeeCC-----------H----HHHHHHHHHHHHcC
Q psy7088 34 HADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKD-----------R----ALSLQMVQRAERSG 98 (873)
Q Consensus 34 hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~~D-----------r----~~~~~LL~RAe~AG 98 (873)
+++.|....|...+.+....+.+++....++|..+...+..++.+|.+-+ + +.+.+.++.|++.|
T Consensus 46 ~~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G 125 (363)
T TIGR02090 46 ASEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHG 125 (363)
T ss_pred CChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC
Confidence 45667766777766666666666677778888665444567888887642 2 34456778888888
Q ss_pred CcEEEEeecc
Q psy7088 99 YSAIVITMDT 108 (873)
Q Consensus 99 ~kALvvTVDt 108 (873)
++.-+-..|+
T Consensus 126 ~~v~~~~eda 135 (363)
T TIGR02090 126 LIVEFSAEDA 135 (363)
T ss_pred CEEEEEEeec
Confidence 8754444465
No 114
>PF10862 FcoT: FcoT-like thioesterase domain; InterPro: IPR022598 Proteins in this family have a HotDog fold. This family was formerly known as DUF2662. The structure of Rv0098 from M. tuberculosis [] suggested a thioesterase function. Assays showed that this protein was a thioesterase with a preference for long chain fatty acyl groups []. The maximal Kcat was observed for palmitoyl-CoA, although longer and shorter molecules were also cleaved. In solution this protein forms a homo-hexameric complex.; PDB: 2PFC_A 3B18_A.
Probab=22.16 E-value=59 Score=33.42 Aligned_cols=14 Identities=43% Similarity=1.039 Sum_probs=12.0
Q ss_pred HHHhhHHHHHHHHH
Q psy7088 270 AEVNLCFDQFVYKL 283 (873)
Q Consensus 270 AEvnlcfdqlv~kl 283 (873)
-|.||||.|+.|-+
T Consensus 54 VEfniCyNQl~Y~~ 67 (157)
T PF10862_consen 54 VEFNICYNQLAYYL 67 (157)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehhhHHHHHHHH
Confidence 58999999999854
No 115
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=21.98 E-value=1.2e+02 Score=33.72 Aligned_cols=30 Identities=20% Similarity=0.463 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHhcCCccchhhhhhhhhhh
Q psy7088 143 SVDWDDVRSLVQATKLPIVCKDSLQQCCDL 172 (873)
Q Consensus 143 sltWeDL~wLR~~t~lPl~lkgtl~~~~dl 172 (873)
..+|+.++.+++..+.|+...|=+....|.
T Consensus 178 ~~~~~~i~~i~~~~~ipvi~nGgI~~~~da 207 (319)
T TIGR00737 178 EANWDIIARVKQAVRIPVIGNGDIFSPEDA 207 (319)
T ss_pred chhHHHHHHHHHcCCCcEEEeCCCCCHHHH
Confidence 357999999999999999999988887776
No 116
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=21.44 E-value=1.9e+02 Score=32.40 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHhcCCccchhhhhhhhhhhh
Q psy7088 144 VDWDDVRSLVQATKLPIVCKDSLQQCCDLS 173 (873)
Q Consensus 144 ltWeDL~wLR~~t~lPl~lkgtl~~~~dls 173 (873)
-+|+++++||+.++.|+...+.+...-|+.
T Consensus 227 ~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~ 256 (357)
T cd03316 227 DDLEGLARLRQATSVPIAAGENLYTRWEFR 256 (357)
T ss_pred cCHHHHHHHHHhCCCCEEeccccccHHHHH
Confidence 378999999999999999999887666653
No 117
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.31 E-value=3.8e+02 Score=23.03 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=25.4
Q ss_pred ceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEe
Q psy7088 73 TLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 105 (873)
Q Consensus 73 ~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvT 105 (873)
...+=+-..+....+.++++.|++.|++.+++|
T Consensus 49 d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 49 DVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 344444445556678889999999999999999
No 118
>PRK08227 autoinducer 2 aldolase; Validated
Probab=21.22 E-value=2.4e+02 Score=31.34 Aligned_cols=83 Identities=25% Similarity=0.264 Sum_probs=48.1
Q ss_pred cccCCcceechhhhhhcCCChhH--HHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEee----CCHHHHHH
Q psy7088 16 TRYRCPVGIAPSAMQKLAHADGE--VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIF----KDRALSLQ 89 (873)
Q Consensus 16 ~~ls~PI~IAPtG~~~L~hpdGE--~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~----~Dr~~~~~ 89 (873)
+++-+|+++ +....+-..-+-+ ...||.|++.|.=++=..+...++++|.++.|- + +.+- .+.+...+
T Consensus 137 ~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~~~f~~vv~a~~v-P----VviaGG~k~~~~~~L~ 210 (264)
T PRK08227 137 LRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVEEGFERITAGCPV-P----IVIAGGKKLPERDALE 210 (264)
T ss_pred HHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCHHHHHHHHHcCCC-c----EEEeCCCCCCHHHHHH
Confidence 456788765 2211111111112 256788888886555444444688898876542 2 3332 24455678
Q ss_pred HHHHHHHcCCcEEEE
Q psy7088 90 MVQRAERSGYSAIVI 104 (873)
Q Consensus 90 LL~RAe~AG~kALvv 104 (873)
+++.|-++|+..+++
T Consensus 211 ~v~~ai~aGa~Gv~~ 225 (264)
T PRK08227 211 MCYQAIDEGASGVDM 225 (264)
T ss_pred HHHHHHHcCCceeee
Confidence 888888999887654
No 119
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=20.75 E-value=2.6e+02 Score=30.41 Aligned_cols=84 Identities=14% Similarity=0.046 Sum_probs=53.4
Q ss_pred cceechhhhhhcCCChhHHHHHHHHhhcCCceec--CCCC---CCCHHHHH-------hcCC-CCceEEEEEeeCCHHHH
Q psy7088 21 PVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL--SLMS---TTSLEEVR-------AQNP-STTLWLQMYIFKDRALS 87 (873)
Q Consensus 21 PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~L--St~S---s~SlEeIa-------aa~p-~g~~WFQLY~~~Dr~~~ 87 (873)
|..+.|.--.+-.+.++=...++-..+.|+--++ +|.+ +.|.||-. +..+ ..+.+.++- ..+-+.+
T Consensus 6 ~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~~ 84 (284)
T cd00950 6 TALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG-SNNTAEA 84 (284)
T ss_pred eeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC-CccHHHH
Confidence 5566676555555666667778888888865443 3332 45666542 2332 334444442 2356778
Q ss_pred HHHHHHHHHcCCcEEEEe
Q psy7088 88 LQMVQRAERSGYSAIVIT 105 (873)
Q Consensus 88 ~~LL~RAe~AG~kALvvT 105 (873)
.++.+.|+++|++++++.
T Consensus 85 ~~~a~~a~~~G~d~v~~~ 102 (284)
T cd00950 85 IELTKRAEKAGADAALVV 102 (284)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 899999999999999988
No 120
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=20.72 E-value=1.3e+02 Score=34.78 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=40.2
Q ss_pred hhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCC
Q psy7088 29 MQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGY 99 (873)
Q Consensus 29 ~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~ 99 (873)
+.++.. +|-..+.+.|.+.|++++.+-+...+++.+.+..+ ++|+ ..-.-....+++.+.+.|-
T Consensus 163 f~g~~~-e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~vd----~lkI--~s~~~~n~~LL~~~a~~gk 226 (360)
T PRK12595 163 FQGLGV-EGLKILKQVADEYGLAVISEIVNPADVEVALDYVD----VIQI--GARNMQNFELLKAAGRVNK 226 (360)
T ss_pred ccCCCH-HHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHhCC----eEEE--CcccccCHHHHHHHHccCC
Confidence 444432 55667888888888888888888888888876632 3443 2222222467777766554
No 121
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=20.61 E-value=2.5e+02 Score=30.83 Aligned_cols=88 Identities=11% Similarity=0.157 Sum_probs=50.8
Q ss_pred CceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCc----ccccccccccccccccCcchhhhhhccCCCCCHH
Q psy7088 72 TTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGS----RYHISKFRDISAEECSSGLTDYVANQFDDSVDWD 147 (873)
Q Consensus 72 g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~----RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWe 147 (873)
-+.|..+ ..+.+.+.+++++++++|+.+|.++ ++. .|. |.+.+.+.. ..+.+ .........|+
T Consensus 155 ~Pv~vKl--~~~~~~~~~~a~~~~~~G~d~i~~~-nt~-~g~~~~~~~~~~~~~~--------~~gg~-sg~~~~~~~~~ 221 (296)
T cd04740 155 VPVIVKL--TPNVTDIVEIARAAEEAGADGLTLI-NTL-KGMAIDIETRKPILGN--------VTGGL-SGPAIKPIALR 221 (296)
T ss_pred CCEEEEe--CCCchhHHHHHHHHHHcCCCEEEEE-CCC-cccccccccCceeecC--------Cccee-cCcccchHHHH
Confidence 4566564 3444567788999999999987652 111 111 000000000 00001 11112235788
Q ss_pred HHHHHHHhcCCccchhhhhhhhhhh
Q psy7088 148 DVRSLVQATKLPIVCKDSLQQCCDL 172 (873)
Q Consensus 148 DL~wLR~~t~lPl~lkgtl~~~~dl 172 (873)
.++.+++..+.|++..|=+....|.
T Consensus 222 ~i~~i~~~~~ipii~~GGI~~~~da 246 (296)
T cd04740 222 MVYQVYKAVEIPIIGVGGIASGEDA 246 (296)
T ss_pred HHHHHHHhcCCCEEEECCCCCHHHH
Confidence 8999999999999998888777666
No 122
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=20.21 E-value=2e+02 Score=33.58 Aligned_cols=133 Identities=11% Similarity=0.030 Sum_probs=73.6
Q ss_pred ChhHHHHHHHHhhcCCceecC---CCCCCCHHHHHhcCCCC---ceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeecc
Q psy7088 35 ADGEVATARAAGMMDAIMILS---LMSTTSLEEVRAQNPST---TLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDT 108 (873)
Q Consensus 35 pdGE~a~ARAAa~aGip~~LS---t~Ss~SlEeIaaa~p~g---~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDt 108 (873)
-.|-.|+|+||..+|+-++-+ |=+|.=+|.+++..+.| -.|.| ..|.....+.+-=|-.+|++|...|
T Consensus 13 ~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq---~E~E~~A~~~~~GAs~aGaRa~TaT--- 86 (407)
T PRK09622 13 WDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVM---VESEHAAMSACVGAAAAGGRVATAT--- 86 (407)
T ss_pred cchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEe---eccHHHHHHHHHHHHhhCcCEEeec---
Confidence 468899999999999998775 55555566666544432 24555 4577777788888888999875443
Q ss_pred CccCccccccccccccc--ccccCc-chhhhhhccCCCCCHH---HHHHHHHhcCCccchhhhhhhhhhhhhhhH
Q psy7088 109 AVLGSRYHISKFRDISA--EECSSG-LTDYVANQFDDSVDWD---DVRSLVQATKLPIVCKDSLQQCCDLSQLWY 177 (873)
Q Consensus 109 Pv~G~RErd~~f~~~~~--~~~~~~-~~~~v~~~~d~sltWe---DL~wLR~~t~lPl~lkgtl~~~~dls~Lwf 177 (873)
...|-=-. .+.+.. ....+- +....+....+-.+|- |+-.. ..++.++...++.++|.|+.-.=|
T Consensus 87 S~~Gl~lm---~E~l~~aa~~~~P~V~~~~~R~~~~~~~i~~d~~D~~~~-r~~g~ivl~p~s~QEa~d~~~~Af 157 (407)
T PRK09622 87 SSQGLALM---VEVLYQASGMRLPIVLNLVNRALAAPLNVNGDHSDMYLS-RDSGWISLCTCNPQEAYDFTLMAF 157 (407)
T ss_pred CcchHHHH---hhHHHHHHHhhCCEEEEEeccccCCCcCCCchHHHHHHH-hcCCeEEEeCCCHHHHHHHHHHHH
Confidence 12220000 000000 000000 0000000001123442 34443 356678889999999999977655
No 123
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=20.09 E-value=2.5e+02 Score=32.43 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=34.5
Q ss_pred CCCcceE-cCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHH
Q psy7088 7 RDSGLTV-LGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEV 65 (873)
Q Consensus 7 ~DtsTtI-fG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeI 65 (873)
+|+++.+ =+.++..||+-||+- .. .|..+|.+-++.|-..++-- ..++|+-
T Consensus 24 v~~~~~~~~~~~l~iPivsa~MD--tV----te~~mAiama~~Gglgvih~--~~~~e~q 75 (352)
T PF00478_consen 24 VSLSTKLTRNITLKIPIVSAPMD--TV----TESEMAIAMARLGGLGVIHR--NMSIEEQ 75 (352)
T ss_dssp -BEEEESSTSEEESSSEEE-SST--TT----SSHHHHHHHHHTTSEEEEES--SSCHHHH
T ss_pred eECcccccCCEeecCceEecCcc--cc----chHHHHHHHHHhcCCceecC--CCCHHHH
Confidence 4444334 477999999999944 33 67889999999988888854 3455533
No 124
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=20.06 E-value=3.8e+02 Score=29.63 Aligned_cols=85 Identities=6% Similarity=0.007 Sum_probs=55.6
Q ss_pred CcceechhhhhhcCCChhHHHHHHHHhhcCCceec--CCC---CCCCHHHHH-------hc-CCCCceEEEEEeeCCHHH
Q psy7088 20 CPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL--SLM---STTSLEEVR-------AQ-NPSTTLWLQMYIFKDRAL 86 (873)
Q Consensus 20 ~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~L--St~---Ss~SlEeIa-------aa-~p~g~~WFQLY~~~Dr~~ 86 (873)
.|..+.|.--.+-.+.+|=..+++-..+.|+--++ +|. .+.|.||-. ++ .+..+.+.++- .+-+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 35666776544445666667788888888865543 343 345666643 22 23345666663 35677
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q psy7088 87 SLQMVQRAERSGYSAIVITM 106 (873)
Q Consensus 87 ~~~LL~RAe~AG~kALvvTV 106 (873)
+.++.+.|+++|+++++++-
T Consensus 88 ai~~a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLP 107 (296)
T ss_pred HHHHHHHHHHhCCCEEEECC
Confidence 78899999999999998854
Done!