Query psy7088
Match_columns 873
No_of_seqs 253 out of 1271
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 17:48:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8c_A Cytoplasmic FMR1-intera 100.0 8E-228 3E-232 2020.7 49.3 666 142-857 582-1253(1253)
2 3sgz_A Hydroxyacid oxidase 2; 100.0 4.2E-39 1.4E-43 353.2 12.1 167 1-167 51-227 (352)
3 2nzl_A Hydroxyacid oxidase 1; 100.0 2.9E-30 9.9E-35 287.3 12.0 167 1-167 76-262 (392)
4 2nli_A Lactate oxidase; flavoe 100.0 1.4E-29 4.9E-34 279.5 13.1 166 1-167 62-239 (368)
5 1kbi_A Cytochrome B2, L-LCR; f 99.9 4.6E-28 1.6E-32 277.7 12.6 167 1-167 171-353 (511)
6 1p4c_A L(+)-mandelate dehydrog 99.9 1.4E-27 4.9E-32 264.5 13.5 164 1-166 54-234 (380)
7 1gox_A (S)-2-hydroxy-acid oxid 99.9 2.3E-27 7.9E-32 261.8 14.6 166 1-167 53-235 (370)
8 2qr6_A IMP dehydrogenase/GMP r 99.4 2.8E-15 9.6E-20 166.2 -3.7 157 1-168 49-222 (393)
9 3sr7_A Isopentenyl-diphosphate 99.3 4.5E-12 1.5E-16 140.2 8.1 137 2-165 69-214 (365)
10 1p0k_A Isopentenyl-diphosphate 99.2 8.2E-12 2.8E-16 136.3 8.4 136 3-165 39-186 (349)
11 3r2g_A Inosine 5'-monophosphat 99.2 9.4E-12 3.2E-16 137.4 5.2 125 2-166 21-150 (361)
12 1vcf_A Isopentenyl-diphosphate 99.1 7.2E-12 2.5E-16 136.1 1.5 124 3-165 42-189 (332)
13 3vkj_A Isopentenyl-diphosphate 98.7 8.2E-09 2.8E-13 114.3 5.7 137 3-165 43-195 (368)
14 1ypf_A GMP reductase; GUAC, pu 98.3 2.5E-08 8.5E-13 108.7 -2.7 128 1-165 28-156 (336)
15 1eep_A Inosine 5'-monophosphat 98.3 2.2E-07 7.5E-12 103.5 3.1 153 3-166 25-203 (404)
16 2c6q_A GMP reductase 2; TIM ba 98.3 4.8E-07 1.6E-11 99.5 4.9 125 3-167 35-171 (351)
17 1gte_A Dihydropyrimidine dehyd 98.1 4.9E-06 1.7E-10 102.7 8.8 140 4-166 528-712 (1025)
18 3p8c_A Cytoplasmic FMR1-intera 97.4 4.9E-05 1.7E-09 93.9 3.0 71 341-427 745-830 (1253)
19 1f76_A Dihydroorotate dehydrog 97.3 0.00031 1E-08 76.0 7.4 142 6-164 42-218 (336)
20 2e6f_A Dihydroorotate dehydrog 97.0 0.0019 6.6E-08 69.0 9.6 131 7-165 2-168 (314)
21 1vhn_A Putative flavin oxidore 96.9 0.00061 2.1E-08 73.4 4.7 122 17-163 2-132 (318)
22 1ep3_A Dihydroorotate dehydrog 96.4 0.0026 8.9E-08 67.4 5.5 135 4-165 2-172 (311)
23 1jub_A Dihydroorotate dehydrog 96.4 0.0097 3.3E-07 63.4 9.6 129 9-165 2-166 (311)
24 1wv2_A Thiazole moeity, thiazo 94.3 0.042 1.4E-06 58.4 5.6 116 49-172 73-202 (265)
25 3khj_A Inosine-5-monophosphate 94.2 0.073 2.5E-06 58.8 7.4 117 4-165 29-153 (361)
26 4ef8_A Dihydroorotate dehydrog 89.0 1.5 5.1E-05 48.3 10.3 137 3-167 31-203 (354)
27 3b0p_A TRNA-dihydrouridine syn 88.3 0.52 1.8E-05 51.5 6.0 124 18-164 2-133 (350)
28 3oix_A Putative dihydroorotate 83.3 4 0.00014 44.8 9.8 99 6-111 35-168 (345)
29 2z6i_A Trans-2-enoyl-ACP reduc 82.6 1.1 3.6E-05 48.5 4.9 151 11-172 6-177 (332)
30 3tjx_A Dihydroorotate dehydrog 81.4 2.7 9.2E-05 45.7 7.6 63 5-78 33-96 (354)
31 2gjl_A Hypothetical protein PA 80.9 4.3 0.00015 43.5 8.8 152 11-172 9-187 (328)
32 4fo4_A Inosine 5'-monophosphat 80.6 1.8 6.3E-05 47.8 6.0 93 4-105 30-127 (366)
33 1xm3_A Thiazole biosynthesis p 79.4 1.6 5.5E-05 45.8 4.8 149 10-172 3-193 (264)
34 1dw9_A Cyanate lyase; cyanate 73.7 0.77 2.6E-05 45.3 0.4 58 711-796 82-139 (156)
35 3bw2_A 2-nitropropane dioxygen 69.6 7.1 0.00024 42.6 6.9 58 19-83 10-74 (369)
36 3p8c_B NCK-associated protein 58.0 14 0.00046 46.4 7.0 227 330-620 692-926 (1128)
37 3bo9_A Putative nitroalkan dio 52.1 22 0.00074 38.2 6.7 148 17-173 24-192 (326)
38 2w6r_A Imidazole glycerol phos 49.6 33 0.0011 35.0 7.4 32 144-175 187-218 (266)
39 1jvn_A Glutamine, bifunctional 44.4 18 0.00063 41.8 5.0 74 74-175 437-514 (555)
40 1ea0_A Glutamate synthase [NAD 38.7 11 0.00036 48.7 1.9 54 5-65 841-894 (1479)
41 1ka9_F Imidazole glycerol phos 35.3 43 0.0015 33.8 5.5 32 144-175 183-214 (252)
42 3ffs_A Inosine-5-monophosphate 32.9 25 0.00084 39.4 3.5 55 5-67 27-82 (400)
43 2z6i_A Trans-2-enoyl-ACP reduc 30.5 61 0.0021 34.7 5.9 59 39-105 78-137 (332)
44 2uva_G Fatty acid synthase bet 29.4 65 0.0022 43.2 7.0 88 12-107 578-677 (2060)
45 4aie_A Glucan 1,6-alpha-glucos 29.2 47 0.0016 37.2 5.0 91 74-180 11-115 (549)
46 3bo9_A Putative nitroalkan dio 26.2 69 0.0024 34.3 5.4 59 39-105 92-151 (326)
47 1vyr_A Pentaerythritol tetrani 25.7 1.9E+02 0.0065 31.5 8.9 107 9-115 7-200 (364)
48 3ks6_A Glycerophosphoryl diest 25.0 50 0.0017 33.8 3.9 39 36-74 117-157 (250)
49 3b0p_A TRNA-dihydrouridine syn 24.0 1.7E+02 0.0057 31.7 8.0 70 85-174 144-214 (350)
50 1dlc_A Delta-endotoxin CRYIIIA 23.9 1.4E+02 0.0048 34.9 7.8 80 518-608 32-117 (584)
51 3bw2_A 2-nitropropane dioxygen 23.9 1.4E+02 0.0049 32.2 7.4 106 40-168 113-219 (369)
52 1z41_A YQJM, probable NADH-dep 23.7 1.7E+02 0.0059 31.3 8.0 107 9-115 7-183 (338)
53 1ofd_A Ferredoxin-dependent gl 23.2 25 0.00087 45.5 1.5 47 17-65 865-911 (1520)
54 1ydn_A Hydroxymethylglutaryl-C 22.4 64 0.0022 33.9 4.2 54 82-164 152-206 (295)
55 2gou_A Oxidoreductase, FMN-bin 21.8 1.6E+02 0.0054 32.2 7.3 46 10-55 8-56 (365)
56 1mzh_A Deoxyribose-phosphate a 20.7 1.7E+02 0.0057 29.6 6.8 69 73-172 117-190 (225)
57 2gjl_A Hypothetical protein PA 20.7 1E+02 0.0036 32.6 5.5 58 39-104 86-144 (328)
58 1x60_A Sporulation-specific N- 20.3 2.1E+02 0.0072 23.7 6.3 36 70-105 6-41 (79)
No 1
>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=100.00 E-value=7.5e-228 Score=2020.69 Aligned_cols=666 Identities=67% Similarity=1.168 Sum_probs=638.1
Q ss_pred CCCCHHHHHHHHHh------cCCccchhhhhhhhhhhhhhhHHHHhhhhccccchhhhhcccccccccccccccceeeec
Q psy7088 142 DSVDWDDVRSLVQA------TKLPIVCKDSLQQCCDLSQLWYREFYLEMTMGRRIQKCVVRHQHNEECSDLITMEKRIQF 215 (873)
Q Consensus 142 ~sltWeDL~wLR~~------t~lPl~lkgtl~~~~dls~LwfrEfyLe~~~g~~~~~~~~~~~~~~~~~~~~~~~~~iqF 215 (873)
..++=+|++.|+.- |.--|+++.||++|||||+||||||||||+||| +|||
T Consensus 582 k~l~~~~~~~i~~F~~~s~~~~~LL~~~~tl~~~~DLS~LWfREfyLElt~~~-----------------------~iQF 638 (1253)
T 3p8c_A 582 SSLEGPTILDIEKFHRESFFYTHLINFSETLQQCCDLSQLWFREFFLELTMGR-----------------------RIQF 638 (1253)
T ss_dssp TTSCHHHHHHHHHHHHHGGGHHHHHTHHHHHHHHSCCGGGSCCHHHHHHTTTS-----------------------CSSC
T ss_pred ccCCHhHHHHHHHHHHHhccHHHHhchHHHHHHhhhHHHHHHHHHHHhhccCc-----------------------eEEe
Confidence 34566777776643 666799999999999999999999999999987 9999
Q ss_pred ccCCchhHHHHHHhhhcCCCCcchhhccccccccchHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy7088 216 PIEMSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLA 295 (873)
Q Consensus 216 PIe~SlPwIL~~hiL~~~~~~l~e~ilypLdlYnDaA~~AL~~lk~q~LydEIeAEvnlcfdqlv~kls~~if~~yK~~A 295 (873)
|||||||||||||||++++|+|+|+||||||||||||++||++|||||||||||||||||||||||||||+||+|||++|
T Consensus 639 PIe~SLPWILtdhiL~s~~~~l~E~ilyPLdlYNDAA~~AL~~lk~qfLYDEIEAEvnLCfDqlv~kLSd~iF~~yK~~A 718 (1253)
T 3p8c_A 639 PIEMSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKVMA 718 (1253)
T ss_dssp CGGGCHHHHHHHHHHHHTCGGGTTTHHHHHTHHHHHHHHHHHTSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCchHHHHHHHHccCCchhHHHHhcchhHHhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcChhhHHHHhhcccccccCCCCchHHHHHhhccceecccceehhHHHHHHHHHHHHHHHHHHHHhhhcCCceeehh
Q psy7088 296 ASMLLDKRFRVECMAMGTYLLAYPRANRYETLLRQRHVQLLGRSIDLNKLITQRINADMHKSLDLAISKFEHGDITGVVE 375 (873)
Q Consensus 296 as~lld~~~~~~~~~~~~~~~~~p~~~R~~~ll~Q~~v~lLGr~idl~~li~qr~n~~~~~~l~~~i~rfe~~~l~~ive 375 (873)
||++|||+||+||++.|.++ ++|+++||++|||||||||||||||||+||+||||++|+++||.||+||||+|||||||
T Consensus 719 as~lLD~~f~~e~~~~~~~~-~~p~~~Ry~~ll~QrhvqLLGRsIDL~~LI~QRln~~~~~~Le~aI~rFEs~dL~~ive 797 (1253)
T 3p8c_A 719 GSLLLDKRLRSECKNQGATI-HLPPSNRYETLLKQRHVQLLGRSIDLNRLITQRVSAAMYKSLELAIGRFESEDLTSIVE 797 (1253)
T ss_dssp HHHTSCHHHHHHHHHTTCCC-CCCCCCCCHHHHTCSCEEETTEEECHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred HHHhcCHHHHHHHhhccccc-cCCchhhHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHH
Confidence 99999999999999989888 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhcccCCcHHHHHHHhcccCCCccchhHHHHHHHhhcCcCcccccCCCcchHHHHHHHhhhcCCc
Q psy7088 376 LEGLLAVNRLCHKLLSKLLGLDDYDAMLHEANHNVLAPYGRITLHIFWELNYDFLPNYCYNGATNRITLHIFWELNYDFL 455 (873)
Q Consensus 376 l~~ll~i~r~tH~lL~~~l~Ld~F~~~l~e~n~~~~s~~~~i~~~~~~e~~~d~~~~y~~~~~~~rit~~vf~el~~d~~ 455 (873)
||++|+|+|.||++|+++++|||||+||+||||+++| || ||||.||||||+|||+
T Consensus 798 Le~ll~i~r~tH~LLse~l~Ld~F~~ml~Ean~~vss-------------------~~------gRIt~hv~~eL~~Df~ 852 (1253)
T 3p8c_A 798 LDGLLEINRMTHKLLSRYLTLDGFDAMFREANHNVSA-------------------PY------GRITLHVFWELNYDFL 852 (1253)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHTTCSSS-------------------SS------CHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhccCCCC-------------------cc------hhHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999988544 44 7788888888888889
Q ss_pred cccccccCCccccccccccccccccccCCCCCcccccccchhHHHHHHHHHhhcccccChHHHHHHHHHhCCCCHHHHHH
Q psy7088 456 PNYCYNGATNRFIKCRGIMFTQQIHREKLPPMTHTYSWGSKQLNMAYYSIYGQYTGFVGAYHFRAMCRLLGYQGIAVVME 535 (873)
Q Consensus 456 pnycyn~~t~rFvr~~~~~~~~~~~r~~~p~~~~~~~~g~~~l~~a~~~~~~~~~~f~g~~H~~a~~rLlg~~~i~~~i~ 535 (873)
||||||++||||||++ ++|+++++|++||+++++++||||.||+||++++++|++|||.|||+||||||||+|||+||+
T Consensus 853 PNy~yn~~T~RFvr~~-~~~~~~~~R~~~P~~~~~~~~Gsk~ln~A~~~~~~~~~~FvG~~H~~ai~rLlg~~~l~~vi~ 931 (1253)
T 3p8c_A 853 PNYCYNGSTNRFVRTV-LPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVME 931 (1253)
T ss_dssp HHEEEETTTTEEEECC-GGGCCCCCCCCCCCCCGGGTTSSHHHHHHHHHHGGGGGSCBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceecCccccccCCC-ccccCcccCCCCCCCcchhhhchHHHHHHHHHHHhhcccccChHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcccccCCCCCCCCChhHHHHHHHhccccccCchhhHHHHHHHHhhhhHHHHHHHHH
Q psy7088 536 ELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYYHAQLNDIVQYPDAKTELFHNFRELGNTILFCLLME 615 (873)
Q Consensus 536 ell~~~~~~i~~~~~~yv~~l~~~mPk~~kLP~~dyGs~G~l~yy~~~L~~~~~Y~dLk~evfq~fREiGN~i~f~~lLd 615 (873)
||||+++++|+++++|||++++++|||+||||++||||+|||+||++||+|+++|||||+||||+||||||+|+||++||
T Consensus 932 ell~~~~~~i~~~~~~yv~~l~~~mPk~~klP~~dyGs~G~~~~y~~~L~~~~~y~dlk~ev~q~fReiGN~i~f~~lLd 1011 (1253)
T 3p8c_A 932 ELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCFQNLREVGNAILFCLLIE 1011 (1253)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHSCSBCCCCCGGGCHHHHHHHHHHHTHHHHSCTTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhhCCCCccCCchHHHHHHHHHHhhHhcChHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHhHhhhccCCCCCCCcccCCCCcchhhhhHHHhhhcccceeccccccCchHHHHHhhhcchhhhhhhccCch
Q psy7088 616 QALSQEEVCDLLHAAPFQNILPRPYCKEGEKPETKQKRLEQKYASLQIVSNIDRLGTAKQAMIAREGDLLTRERLCCGLS 695 (873)
Q Consensus 616 ~aL~q~e~~~~~~aaPf~~iiP~~~~~~g~~~~~~~~~le~k~~~~~v~~~~~~~g~~~q~~~a~e~dll~~erl~~gls 695 (873)
++|+|+|++||+|||||+|++|++++++||+++.|+++||+||+++++++.++++|+++|+.+|+|||+|||||||||||
T Consensus 1012 ~aL~q~e~~~~~~aaPf~gi~P~~~~~~~~~~~~k~~~l~~k~~~~~~v~~~~~~~~~~q~~~a~eadlL~k~rl~~glS 1091 (1253)
T 3p8c_A 1012 QSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKMKRLESKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLS 1091 (1253)
T ss_dssp HHHHHHHHHHHHHHGGGGTCCCCCCCCTTCCHHHHHHHHHHHTGGGCHHHHHHHHSCHHHHHHHHHHHHHHHCCGGGTEE
T ss_pred HHhhHHHHHHHHhhccccCCCCCCCCCcccccchhhHHHHhccCccccchHHhhcCcHHHHHHHHHHHHHhhhhhcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCccCCCCCCCeeeeccccchHHHHHHhHhhhcccCCCCcchhHHhhcCcccchhHHHHHHhccc
Q psy7088 696 IFEVVLNRLRGFLDDPIWVGPPPTNGVINIDECTEFHRLWSALQFVYCIPVGDTEFTVEELFGEGLNWAGCTMIVLLGQQ 775 (873)
Q Consensus 696 ife~~L~ri~~~L~~~~W~g~~p~ngv~~id~~~eF~RlWSaLQF~~C~p~~~~~~~~~e~fGDGl~WaGctII~LLgQq 775 (873)
|||++|+|+|++|++++|+|++|.||||+||||+|||||||||||+||+|+++|+++++|+||||++|||||||+|||||
T Consensus 1092 ife~~L~~~~~~L~~~~W~g~~P~nGvi~id~~~eF~RlwSalQf~~c~p~~~~e~~~~e~FGDgl~WaGctiI~LLGQq 1171 (1253)
T 3p8c_A 1092 MFEVILTRIRSFLDDPIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQ 1171 (1253)
T ss_dssp SHHHHHHHHHTTCCSTTTTCSCCTTSSCCSSBCCSHHHHHHHHHHHHHSCCCTTSCCHHHHHBTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCccccCCCCCCCCeEeeecchhHHHHHHHHHHhhcccCCCCCCcHHHHhcCccchhHHHHHHHhcch
Confidence 99999999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceecchhhcccCCCcccccccHHHHHHHHHHHHHhhhHHHHHHhhhhCCCCCCccccccccccCCCCCcchh
Q psy7088 776 RRFEALDFCYHILRVQRVDGRDENVKGIHLKRMVDRIRRFQVVNSQIFATLNKYLGSSDADAASVEHVRCFPPPIHPSLA 855 (873)
Q Consensus 776 ~rFe~lDF~yhil~V~~~d~~~~~~~g~~l~~~~~~~~~~~~lN~~iFs~L~~~~~~~~~~~~~~~~v~~~~pp~~~~~~ 855 (873)
+|||+||||||||||+++|+||+.+.|++|++|++||||||+|||||||||++|||++|.+++|+||||||+||+|||++
T Consensus 1172 ~rFE~lDF~YHiL~V~~~d~k~~~~~g~~l~~~~~~~r~~~~LN~~iFs~L~~~~~~~~~~~~~~~~vr~f~pp~~~~~~ 1251 (1253)
T 3p8c_A 1172 RRFAVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEGTPVEHVRCFQPPIHQSLA 1251 (1253)
T ss_dssp HHHHHHCHHHHHHHHHHHHCCCCEETTEEHHHHHHHHHHHHHHHHHHHHHHHHHTC---------CCCCCCCCCCCTTC-
T ss_pred hhhhHhhhHHHHhHHHHhhcccccccCccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCcccccccCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hh
Q psy7088 856 QQ 857 (873)
Q Consensus 856 ~~ 857 (873)
++
T Consensus 1252 ~~ 1253 (1253)
T 3p8c_A 1252 SS 1253 (1253)
T ss_dssp --
T ss_pred cC
Confidence 53
No 2
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=100.00 E-value=4.2e-39 Score=353.22 Aligned_cols=167 Identities=34% Similarity=0.504 Sum_probs=143.7
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|+||+++||+||+||+++++||+|||+|+++|+||+||.++||||+++||||++||.|++|+|||+++++++++|||||+
T Consensus 51 l~dv~~~d~~t~llG~~~~~P~~iaP~g~~~l~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~ 130 (352)
T 3sgz_A 51 LRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYM 130 (352)
T ss_dssp SSCCSSCBCCEEETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCC
T ss_pred cCCCCCCCCceEECCcccCCcceechHHHHHhcCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceecccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999887899999999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--cc--------ccccccccCcchhhhhhccCCCCCHHHHH
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FR--------DISAEECSSGLTDYVANQFDDSVDWDDVR 150 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~--------~~~~~~~~~~~~~~v~~~~d~sltWeDL~ 150 (873)
++||+.++++|+|||++||+|||||||+|+.|+||+|.+ |. ++.......+.........+++++|++|+
T Consensus 131 ~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~ 210 (352)
T 3sgz_A 131 KSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPKASFCWNDLS 210 (352)
T ss_dssp CSCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC---------------CCCTTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccccccchhhhhccCCCCCHHHHH
Confidence 999999999999999999999999999999999999853 22 11100000000111225678999999999
Q ss_pred HHHHhcCCccchhhhhh
Q psy7088 151 SLVQATKLPIVCKDSLQ 167 (873)
Q Consensus 151 wLR~~t~lPl~lkgtl~ 167 (873)
|+|+.|++|+++|++++
T Consensus 211 ~lr~~~~~PvivK~v~~ 227 (352)
T 3sgz_A 211 LLQSITRLPIILKGILT 227 (352)
T ss_dssp HHHHHCCSCEEEEEECS
T ss_pred HHHHhcCCCEEEEecCc
Confidence 99999999999999854
No 3
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=99.96 E-value=2.9e-30 Score=287.27 Aligned_cols=167 Identities=42% Similarity=0.721 Sum_probs=143.3
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|+|++++||+|+|||+++++||+|||+|++++.||+||.++||||+++|+++++|+++++++|+|+++.++++.|||||+
T Consensus 76 L~~~~~~d~st~i~G~~l~~Pi~iAPmg~~~l~~~~~e~~laraA~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~ 155 (392)
T 2nzl_A 76 LRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYI 155 (392)
T ss_dssp SSCCTTCBCCEEETTEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHCTTSEEEEEECC
T ss_pred ccCCcCCCcceEECCEecCCceEeccccccccccchHHHHHHHHHHHcCCCeeccchHHHHHHHHHHhcCCCcEEEEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999988777899999999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--cc--------ccccc----------cccCcchhhhhhcc
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FR--------DISAE----------ECSSGLTDYVANQF 140 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~--------~~~~~----------~~~~~~~~~v~~~~ 140 (873)
++|++.+.++++||+++||++|++|||+|+.|+|++|.+ |. +.... ....+...++....
T Consensus 156 ~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~ 235 (392)
T 2nzl_A 156 YKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAI 235 (392)
T ss_dssp BSSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHHHHB
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHhhcC
Confidence 999999999999999999999999999999999999753 21 11000 00111224555566
Q ss_pred CCCCCHHHHHHHHHhcCCccchhhhhh
Q psy7088 141 DDSVDWDDVRSLVQATKLPIVCKDSLQ 167 (873)
Q Consensus 141 d~sltWeDL~wLR~~t~lPl~lkgtl~ 167 (873)
++.++|++|+|+|+.|++|+.+||+++
T Consensus 236 d~~~~~~~i~~lr~~~~~PvivKgv~~ 262 (392)
T 2nzl_A 236 DPSISWEDIKWLRRLTSLPIVAKGILR 262 (392)
T ss_dssp CTTCCHHHHHHHC--CCSCEEEEEECC
T ss_pred ChHHHHHHHHHHHHhhCCCEEEEecCC
Confidence 899999999999999999999998743
No 4
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=99.96 E-value=1.4e-29 Score=279.53 Aligned_cols=166 Identities=26% Similarity=0.383 Sum_probs=136.0
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|+|++++||+|+|||+++++||++||+|++++.||+||.++||||+++|+++++|+++++++|+|+++.++++.|||||+
T Consensus 62 L~~~~~~d~st~i~G~~l~~Pi~iAPma~~g~~~~~~e~~la~aa~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~ 141 (368)
T 2nli_A 62 AQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGGPRWFQIYM 141 (368)
T ss_dssp CCCCSCCCCCEEETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHHTTCCEEEEECC
T ss_pred cCCCccCCcceEECCEecCCceeecchhhccCCCcHHHHHHHHHHHHcCCCEEeechHhHHHHHHHHhCCCCCEEEEEec
Confidence 67999999999999999999999999999999999999999999999999999999999999999877667899999999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--cccc-c-ccc--------ccCcchhhhhhccCCCCCHHH
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FRDI-S-AEE--------CSSGLTDYVANQFDDSVDWDD 148 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~~~-~-~~~--------~~~~~~~~v~~~~d~sltWeD 148 (873)
++|++.+.++++||+++||++|+||+|+|+.|+|++|.+ |... . ... ...++ .++....+++++|++
T Consensus 142 ~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l-~~~~~~~d~~~~~~~ 220 (368)
T 2nli_A 142 AKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSL-NNIYGASKQKISPRD 220 (368)
T ss_dssp BSSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC------CTTBCSBCCHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchH-HhhhhccCchhhHHH
Confidence 999999999999999999999999999999999998753 2110 0 000 01111 122334578899999
Q ss_pred HHHHHHhcCCccchhhhhh
Q psy7088 149 VRSLVQATKLPIVCKDSLQ 167 (873)
Q Consensus 149 L~wLR~~t~lPl~lkgtl~ 167 (873)
|+|+|+.|++|+.+||+++
T Consensus 221 i~~lr~~~~~PvivK~v~~ 239 (368)
T 2nli_A 221 IEEIAGHSGLPVFVKGIQH 239 (368)
T ss_dssp HHHHHHHSSSCEEEEEECS
T ss_pred HHHHHHHcCCCEEEEcCCC
Confidence 9999999999999998743
No 5
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=99.95 E-value=4.6e-28 Score=277.69 Aligned_cols=167 Identities=29% Similarity=0.484 Sum_probs=145.3
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCC-hhHHHHHHHHhh--cCCceecCCCCCCCHHHHHhcC--CCCceE
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHA-DGEVATARAAGM--MDAIMILSLMSTTSLEEVRAQN--PSTTLW 75 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hp-dGE~a~ARAAa~--aGip~~LSt~Ss~SlEeIaaa~--p~g~~W 75 (873)
|+|++++||+|+|||+++++||+|||+|+++++|| +||+++||||++ +|+++++|++++.|+|+|+++. ++++.|
T Consensus 171 L~dv~~~d~st~i~G~~l~~Pi~iAPma~~~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v~~~~~~~~~~~~ 250 (511)
T 1kbi_A 171 LVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQW 250 (511)
T ss_dssp SCCCSSCBCCEEETTEEESSSEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEE
T ss_pred ccCcccccCccccCCccCCCCeEeccchhccccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHHHhhcCCCCCCeE
Confidence 68999999999999999999999999999999999 999999999999 9999999999999999998765 367899
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--cccc----cc-c----cccCcchhhhhhccCCCC
Q psy7088 76 LQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FRDI----SA-E----ECSSGLTDYVANQFDDSV 144 (873)
Q Consensus 76 FQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~~~----~~-~----~~~~~~~~~v~~~~d~sl 144 (873)
||||+.+|++.++++++||+++||++|+||||+|+.|+|+++.+ |... .. . ....+.+.++....++++
T Consensus 251 ~QLy~~~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~~d~~~ 330 (511)
T 1kbi_A 251 YQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSL 330 (511)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTC
T ss_pred EEEeecCCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhccChHh
Confidence 99999999999999999999999999999999999999998753 2111 00 0 001223345555678999
Q ss_pred CHHHHHHHHHhcCCccchhhhhh
Q psy7088 145 DWDDVRSLVQATKLPIVCKDSLQ 167 (873)
Q Consensus 145 tWeDL~wLR~~t~lPl~lkgtl~ 167 (873)
+|++|+|+|+.|++|+.+||+..
T Consensus 331 ~~~~i~~lr~~~~~PvivKgv~~ 353 (511)
T 1kbi_A 331 TWKDIEELKKKTKLPIVIKGVQR 353 (511)
T ss_dssp CHHHHHHHHHHCSSCEEEEEECS
T ss_pred HHHHHHHHHHHhCCcEEEEeCCC
Confidence 99999999999999999998764
No 6
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=99.94 E-value=1.4e-27 Score=264.51 Aligned_cols=164 Identities=29% Similarity=0.429 Sum_probs=141.3
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|+|++++||+|+|||+++++||++||+|+++++||+||.++||+|+++|+++++|+.+++++|+|+++ ++++.|||+|+
T Consensus 54 L~~~~~~d~st~i~G~~l~~Pv~iap~~~~~~~~~~~~~~~a~aa~~~G~~~~vss~s~~~le~i~~~-~~~~~~fQly~ 132 (380)
T 1p4c_A 54 LVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQ-CDGDLWFQLYV 132 (380)
T ss_dssp SCCCSSCBCCEEETTEEESSSEEECCCSCGGGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHH-CCSCEEEEECC
T ss_pred cCCCccCcceeEECCeecCCceEecCccccccCCCcHHHHHHHHHHHcCCCeecCccccCCHHHHHhc-cCCCeEEEEEe
Confidence 67999999999999999999999999999999999999999999999999999999999999999876 45789999999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--cccc---ccc------------cccCcchhhhhhccCCC
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FRDI---SAE------------ECSSGLTDYVANQFDDS 143 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~~~---~~~------------~~~~~~~~~v~~~~d~s 143 (873)
++ ++.+.++++||+++||++++||||+|+.|+|++|.+ +... ... ....++..++...++|.
T Consensus 133 ~~-~~~~~~~i~~a~~aG~~al~vTvd~p~~g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~~~~~~~~p~ 211 (380)
T 1p4c_A 133 IH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDAS 211 (380)
T ss_dssp SS-HHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTT
T ss_pred ch-HHHHHHHHHHHHHcCCCEEEEeecCccccchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHHHHHhhcCcc
Confidence 99 999999999999999999999999999999998753 3210 000 00011222344456899
Q ss_pred CCHHHHHHHHHhcCCccchhhhh
Q psy7088 144 VDWDDVRSLVQATKLPIVCKDSL 166 (873)
Q Consensus 144 ltWeDL~wLR~~t~lPl~lkgtl 166 (873)
++|+.|+|+|+.|++|+.+||+.
T Consensus 212 ~~~~~i~~i~~~~~~Pv~vkgv~ 234 (380)
T 1p4c_A 212 FNWEALRWLRDLWPHKLLVKGLL 234 (380)
T ss_dssp CCHHHHHHHHHHCCSEEEEEEEC
T ss_pred ccHHHHHHHHHhcCCCEEEEecC
Confidence 99999999999999999999864
No 7
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=99.94 E-value=2.3e-27 Score=261.83 Aligned_cols=166 Identities=44% Similarity=0.669 Sum_probs=143.3
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
|+|++++||+|+|||+++++||++||+|+++++||+||.++|+||+++|+++++|+++++++|||+++.| ++.|||||+
T Consensus 53 l~~~~~~d~~t~i~G~~~~~Pi~iAPmg~~~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~ieev~~~~~-~~~~~QLy~ 131 (370)
T 1gox_A 53 LIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP-GIRFFQLYV 131 (370)
T ss_dssp SCCCSCCBCCEEETTEEESSSEEECCCSCGGGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCC-CCEEEEECC
T ss_pred cCCCCCCCCceEECCcccCCceeEcccchhhhccchHHHHHHHHHHHcCCCeeccCCCCCCHHHHHhhcC-CCceEEEec
Confidence 6799999999999999999999999999999999999999999999999999999999999999998876 789999999
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCccccccc--cc--------cccc-------ccccCcchhhhhhccCCC
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK--FR--------DISA-------EECSSGLTDYVANQFDDS 143 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~--f~--------~~~~-------~~~~~~~~~~v~~~~d~s 143 (873)
++|++.+.++++||+++|+++|+||+|+|+.|+|+++.+ |. +... ..........+....++.
T Consensus 132 ~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~ 211 (370)
T 1gox_A 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRS 211 (370)
T ss_dssp BSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTT
T ss_pred CCCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhcCcc
Confidence 999999999999999999999999999999999998743 21 0000 000111112344466889
Q ss_pred CCHHHHHHHHHhcCCccchhhhhh
Q psy7088 144 VDWDDVRSLVQATKLPIVCKDSLQ 167 (873)
Q Consensus 144 ltWeDL~wLR~~t~lPl~lkgtl~ 167 (873)
++|++++|+|+.|++|+.+|++++
T Consensus 212 ~~~~~i~~l~~~~~~pv~vK~~~~ 235 (370)
T 1gox_A 212 LSWKDVAWLQTITSLPILVKGVIT 235 (370)
T ss_dssp CCHHHHHHHHHHCCSCEEEECCCS
T ss_pred chHHHHHHHHHHhCCCEEEEecCC
Confidence 999999999999999999999855
No 8
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=99.44 E-value=2.8e-15 Score=166.18 Aligned_cols=157 Identities=14% Similarity=0.103 Sum_probs=109.2
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCC--------CCCCCHHHHHhcCCC-
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSL--------MSTTSLEEVRAQNPS- 71 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt--------~Ss~SlEeIaaa~p~- 71 (873)
++|++++|++|+++|.+++.||++||++ ++.|| ++|+||+++|.++++|+ .++.++|+|+++.+.
T Consensus 49 ~~~~~~vdlst~l~g~~l~~Pii~Apm~--g~~~~----~~a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~ 122 (393)
T 2qr6_A 49 TRSSKDVDTTWHIDAYKFDLPFMNHPSD--ALASP----EFVIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEG 122 (393)
T ss_dssp CCCGGGCBCCEEETTEEESSSEEECCCT--TTCCH----HHHHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHH
T ss_pred CCChhHCCceeEEcccccCCCeEeCCCC--CcccH----HHHHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhc
Confidence 4688999999999999999999999999 67676 69999999999999998 556789999876432
Q ss_pred -----CceEEEEEeeC-CHHHHHHHHHHHHHcCCcEEEEeeccCccCccccc--ccccccccccccCcchhhhhhccCCC
Q psy7088 72 -----TTLWLQMYIFK-DRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHI--SKFRDISAEECSSGLTDYVANQFDDS 143 (873)
Q Consensus 72 -----g~~WFQLY~~~-Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd--~~f~~~~~~~~~~~~~~~v~~~~d~s 143 (873)
...|||+|+.+ |++.+.++++|++++|+++++- +.+++..+ ..+.....+...............+.
T Consensus 123 d~~~g~~~~~q~~~~~~d~~~~~~~i~~~~~~g~~v~~~-----v~~~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~ 197 (393)
T 2qr6_A 123 DQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAVR-----VSPQNVREIAPIVIKAGADLLVIQGTLISAEHVNTG 197 (393)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCCEEE-----ECTTTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-
T ss_pred CCCccchhhhhcccccCCHHHHHHHHHHHhhcCCeEEEE-----eCCccHHHHHHHHHHCCCCEEEEeCCccccccCCCc
Confidence 46899999765 9999999999999999988762 22333321 01111000000000000001122344
Q ss_pred CCHHHHHHHHHhcCCccchhhhhhh
Q psy7088 144 VDWDDVRSLVQATKLPIVCKDSLQQ 168 (873)
Q Consensus 144 ltWeDL~wLR~~t~lPl~lkgtl~~ 168 (873)
.+|++|+|+++.|++|++++|+.+.
T Consensus 198 ~~~~~i~~l~~~~~~pvi~ggi~t~ 222 (393)
T 2qr6_A 198 GEALNLKEFIGSLDVPVIAGGVNDY 222 (393)
T ss_dssp ----CHHHHHHHCSSCEEEECCCSH
T ss_pred ccHHHHHHHHHhcCCCEEECCcCCH
Confidence 5999999999999999999887654
No 9
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=99.27 E-value=4.5e-12 Score=140.17 Aligned_cols=137 Identities=12% Similarity=0.149 Sum_probs=91.3
Q ss_pred CCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHH-------HhcCCCCce
Q psy7088 2 RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEV-------RAQNPSTTL 74 (873)
Q Consensus 2 rdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeI-------aaa~p~g~~ 74 (873)
.|++++||+|+|+|+++++||+|||+++....+++++.++|++|+++|+++++|+.+. .+|+- .+..|+++.
T Consensus 69 ~~~~~vd~st~i~g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~-~le~~~~~~~~v~r~~P~~~~ 147 (365)
T 3sr7_A 69 YDLAEIDLSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYST-ALKNPDDTSYQVKKSRPHLLL 147 (365)
T ss_dssp SCGGGCCCCEEETTEEESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC------------------------CCE
T ss_pred CCcccccceEEECCEEccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeecccccc-cccCccccceEehhhCCCCcE
Confidence 5788999999999999999999999999999999999999999999999999998875 24442 222244444
Q ss_pred EEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCC-CH-HHHHHH
Q psy7088 75 WLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSV-DW-DDVRSL 152 (873)
Q Consensus 75 WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sl-tW-eDL~wL 152 (873)
+--+-..... ++..+.++.+|+.||.+++|... | .+...-++.+ +| +.|+|+
T Consensus 148 ianig~~~~~---e~~~~~ve~~~adal~ihln~~q----e-------------------~~~p~Gd~~~~~~~~~I~~l 201 (365)
T 3sr7_A 148 ATNIGLDKPY---QAGLQAVRDLQPLFLQVHINLMQ----E-------------------LLMPEGEREFRSWKKHLSDY 201 (365)
T ss_dssp EEEEETTSCH---HHHHHHHHHHCCSCEEEEECHHH----H-------------------HTSSSSCCCCHHHHHHHHHH
T ss_pred EEEeCCCCCH---HHHHHHHHhcCCCEEEEeccccc----c-------------------ccCCCCCCcHHHHHHHHHHH
Confidence 4333322222 35566677889999999999531 1 0001113445 78 679999
Q ss_pred HHhcCCccchhhh
Q psy7088 153 VQATKLPIVCKDS 165 (873)
Q Consensus 153 R~~t~lPl~lkgt 165 (873)
|+.|+.|+.+|++
T Consensus 202 ~~~~~~PVivK~v 214 (365)
T 3sr7_A 202 AKKLQLPFILKEV 214 (365)
T ss_dssp HHHCCSCEEEEEC
T ss_pred HHhhCCCEEEEEC
Confidence 9999999999986
No 10
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=99.24 E-value=8.2e-12 Score=136.30 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=100.9
Q ss_pred CCCCCCCcceEcCcccCCcceechh-hhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHH---------HhcCCCC
Q psy7088 3 NVCDRDSGLTVLGTRYRCPVGIAPS-AMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEV---------RAQNPST 72 (873)
Q Consensus 3 dVs~~DtsTtIfG~~ls~PI~IAPt-G~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeI---------aaa~p~g 72 (873)
|++++|++|+|+|.+++.||++||+ |+++..++++|.++|+||+++|+++++|+.++. +|++ ....++.
T Consensus 39 ~~~~~d~~~~i~g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~ 117 (349)
T 1p0k_A 39 ALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA-LKDPSERLSYEIVRKENPNG 117 (349)
T ss_dssp CGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTT-TTCHHHHHHHHHHHHHCSSS
T ss_pred CcccCCceeEECCcccCCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchhc-ccCcccccceehhhhhCCCc
Confidence 7789999999999999999999996 666334577899999999999999999998765 5442 3344567
Q ss_pred ceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCC--HHHHH
Q psy7088 73 TLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVD--WDDVR 150 (873)
Q Consensus 73 ~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~slt--WeDL~ 150 (873)
+.+-|+....+.+.. .+.++.+|+++|.+++++|....+ ...++.++ |+.++
T Consensus 118 pv~~~i~~~~~~~~~---~~~~~~~gad~i~i~~~~~~~~~~-----------------------~~~~~~~~~~~~~i~ 171 (349)
T 1p0k_A 118 LIFANLGSEATAAQA---KEAVEMIGANALQIHLNVIQEIVM-----------------------PEGDRSFSGALKRIE 171 (349)
T ss_dssp CEEEEEETTCCHHHH---HHHHHHTTCSEEEEEECTTTTC-------------------------------CTTHHHHHH
T ss_pred eeEEeecCCCCHHHH---HHHHHhcCCCeEEecccchhhhcC-----------------------CCCCcchHHHHHHHH
Confidence 788888754455443 345667899999999998632100 00134443 47899
Q ss_pred HHHHhcCCccchhhh
Q psy7088 151 SLVQATKLPIVCKDS 165 (873)
Q Consensus 151 wLR~~t~lPl~lkgt 165 (873)
|+|+.|+.|+.+|++
T Consensus 172 ~vr~~~~~Pv~vK~~ 186 (349)
T 1p0k_A 172 QICSRVSVPVIVKEV 186 (349)
T ss_dssp HHHHHCSSCEEEEEE
T ss_pred HHHHHcCCCEEEEec
Confidence 999999999999975
No 11
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=99.18 E-value=9.4e-12 Score=137.40 Aligned_cols=125 Identities=15% Similarity=-0.010 Sum_probs=102.9
Q ss_pred CCCC--CCC--CcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEE
Q psy7088 2 RNVC--DRD--SGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQ 77 (873)
Q Consensus 2 rdVs--~~D--tsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQ 77 (873)
++++ ++| ++|+|+|.+++.||++||+ |+.+|.++|+|++++|.+.++|+. .|+|++++... ..+|+|
T Consensus 21 ~~~~r~~vd~~~~t~l~g~~l~~Pii~ApM------~~vte~~lA~A~a~~Gg~gvi~~~--~s~ee~~~~i~-~~~~~~ 91 (361)
T 3r2g_A 21 HHESRRVVETTSTDRLGKLTLNLPVISANM------DTITESNMANFMHSKGAMGALHRF--MTIEENIQEFK-KCKGPV 91 (361)
T ss_dssp CSCTTCCCCCCEECTTSSCEESSCEEECCS------TTTCSHHHHHHHHHTTCEEBCCSC--SCHHHHHHHHH-TCCSCC
T ss_pred CCCccccccceeeEEECCEEcCCCEEECCC------CCchHHHHHHHHHHcCCCEEEeCC--CCHHHHHHHHh-hcceEE
Confidence 4555 655 4559999999999999995 788999999999999999999975 89999987654 457999
Q ss_pred EEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHhc-
Q psy7088 78 MYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQAT- 156 (873)
Q Consensus 78 LY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t- 156 (873)
.|..++++.+.+.++++.++|++ +|++|++. |.. . .-|+.|+|+|+.|
T Consensus 92 ~~~~g~~~~~~e~~~~a~~aGvd--vI~id~a~-G~~-------------------~---------~~~e~I~~ir~~~~ 140 (361)
T 3r2g_A 92 FVSVGCTENELQRAEALRDAGAD--FFCVDVAH-AHA-------------------K---------YVGKTLKSLRQLLG 140 (361)
T ss_dssp BEEECSSHHHHHHHHHHHHTTCC--EEEEECSC-CSS-------------------H---------HHHHHHHHHHHHHT
T ss_pred EEEcCCCHHHHHHHHHHHHcCCC--EEEEeCCC-CCc-------------------H---------hHHHHHHHHHHhcC
Confidence 99999999999999999999999 67888765 311 0 1289999999998
Q ss_pred CCccchhhhh
Q psy7088 157 KLPIVCKDSL 166 (873)
Q Consensus 157 ~lPl~lkgtl 166 (873)
+.|++.+++.
T Consensus 141 ~~~Vi~G~V~ 150 (361)
T 3r2g_A 141 SRCIMAGNVA 150 (361)
T ss_dssp TCEEEEEEEC
T ss_pred CCeEEEcCcC
Confidence 5788776443
No 12
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=99.13 E-value=7.2e-12 Score=136.09 Aligned_cols=124 Identities=20% Similarity=0.270 Sum_probs=86.0
Q ss_pred CCCCCCCcceEcCcccCCcceechhhhhhcCCChhH---HHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEE
Q psy7088 3 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGE---VATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY 79 (873)
Q Consensus 3 dVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE---~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY 79 (873)
|++++||+|+|+|++++.||++||+++ .|+.|| .++|+||+++|+++++|+.++. +|+. ++..|||+
T Consensus 42 ~~~~~d~~~~i~g~~l~~P~~iapm~g---~~~~~~~~~~~la~~a~~~G~~~~~~~~~~~-le~~-----~~~~~~ql- 111 (332)
T 1vcf_A 42 ALSEVDLTTPFLGKTLKAPFLIGAMTG---GEENGERINLALAEAAEALGVGMMLGSGRIL-LERP-----EALRSFRV- 111 (332)
T ss_dssp CGGGCCCCEEETTEEESSSEEECCCC------CCHHHHHHHHHHHHHHHTCEEEEEECHHH-HHCT-----TTHHHHCC-
T ss_pred CCCCCCcceEECCcccCCceEEecccc---CCcchhHHHHHHHHHHHHcCCCEEeCCchhc-ccCC-----CccceEEe-
Confidence 778999999999999999999999874 488876 7999999999999999999875 6652 34678885
Q ss_pred eeCCHH-------------H----HHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCC
Q psy7088 80 IFKDRA-------------L----SLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDD 142 (873)
Q Consensus 80 ~~~Dr~-------------~----~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~ 142 (873)
++++ . .+...+.++.+|++++.++++.. ...+ . ++
T Consensus 112 --~~~~~d~pv~~~~~~~q~~~~~~~~~~~a~~~~~~~a~~i~~n~~-----------------------~~~~--~-~~ 163 (332)
T 1vcf_A 112 --RKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPL-----------------------QEAV--Q-RG 163 (332)
T ss_dssp --TTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHH-----------------------HHHH--T-TS
T ss_pred --eccCCCceeecccChhhhhccChHHHHHHHhhcCCCceeeccchH-----------------------HHHh--c-CC
Confidence 3321 0 12222223334555555444321 0011 1 33
Q ss_pred CCC----HHHHHHHHHhcCCccchhhh
Q psy7088 143 SVD----WDDVRSLVQATKLPIVCKDS 165 (873)
Q Consensus 143 slt----WeDL~wLR~~t~lPl~lkgt 165 (873)
..+ |+.++|+|+ |+.|+.+|++
T Consensus 164 ~~~~~~~~~~i~~vr~-~~~Pv~vK~v 189 (332)
T 1vcf_A 164 DTDFRGLVERLAELLP-LPFPVMVKEV 189 (332)
T ss_dssp CCCCTTHHHHHHHHCS-CSSCEEEECS
T ss_pred CccHHHHHHHHHHHHc-CCCCEEEEec
Confidence 333 899999999 9999999974
No 13
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=98.71 E-value=8.2e-09 Score=114.32 Aligned_cols=137 Identities=12% Similarity=0.105 Sum_probs=92.7
Q ss_pred CCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCC--------CCHHHHHhcCCCCce
Q psy7088 3 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMST--------TSLEEVRAQNPSTTL 74 (873)
Q Consensus 3 dVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss--------~SlEeIaaa~p~g~~ 74 (873)
|++++||+|+|+|++++.||++||+++......+-...+|++|++.|+++++|+... .|.+-+.+.+|+++.
T Consensus 43 ~~~~vd~st~~~g~~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~~~s~~~vr~~ap~~~~ 122 (368)
T 3vkj_A 43 SFSEINTKTKFFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEARESFAIVRKVAPTIPI 122 (368)
T ss_dssp BGGGCBCCEEETTEEESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGGSHHHHHHHHHCSSSCE
T ss_pred CcccccceeEECCEeccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHHHhhHHHHHHhCcCcce
Confidence 668899999999999999999999866332222334689999999999999998832 133235555677777
Q ss_pred EEEEEee-----CCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCC---CH
Q psy7088 75 WLQMYIF-----KDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSV---DW 146 (873)
Q Consensus 75 WFQLY~~-----~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sl---tW 146 (873)
+-.+... .+.+...+. ++.+++.|+++.+... -+ .+...-+..+ .|
T Consensus 123 ~anlg~~ql~~~~~~~~~~~a---v~~~~a~al~Ihln~~-~~----------------------~~~p~g~~~~~~~~~ 176 (368)
T 3vkj_A 123 IANLGMPQLVKGYGLKEFQDA---IQMIEADAIAVHLNPA-QE----------------------VFQPEGEPEYQIYAL 176 (368)
T ss_dssp EEEEEGGGGGTTCCHHHHHHH---HHHTTCSEEEEECCHH-HH----------------------HHSSSCCCBCBTHHH
T ss_pred ecCcCeeecCCCCCHHHHHHH---HHHhcCCCeEEEecch-hh----------------------hhCCCCCchhhHHHH
Confidence 7666652 344443333 4445778888776521 00 0000001223 47
Q ss_pred HHHHHHHHhcCCccchhhh
Q psy7088 147 DDVRSLVQATKLPIVCKDS 165 (873)
Q Consensus 147 eDL~wLR~~t~lPl~lkgt 165 (873)
+.|+|+++.|+.|+.+|++
T Consensus 177 ~~i~~i~~~~~vPVivK~v 195 (368)
T 3vkj_A 177 EKLRDISKELSVPIIVKES 195 (368)
T ss_dssp HHHHHHHTTCSSCEEEECS
T ss_pred HHHHHHHHHcCCCEEEEeC
Confidence 8999999999999999976
No 14
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=98.35 E-value=2.5e-08 Score=108.75 Aligned_cols=128 Identities=9% Similarity=0.129 Sum_probs=76.5
Q ss_pred CCCCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEEe
Q psy7088 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMYI 80 (873)
Q Consensus 1 LrdVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY~ 80 (873)
++|++++||+|+|+|.+++.||++||++.. |.++++++. ....|||+|.
T Consensus 28 ~~~~~~vdl~t~i~g~~l~~Pi~~a~mag~------------------------------s~~~la~a~-~~~gg~g~~~ 76 (336)
T 1ypf_A 28 VNSRSECDTTVTLGKHKFKLPVVPANMQTI------------------------------IDERIATYL-AENNYFYIMH 76 (336)
T ss_dssp CSSGGGCBCCEEETTEEESSSEEECSSTTT------------------------------CCHHHHHHH-HHTTCCCCCC
T ss_pred CCCcccCcceEEECCEEecCcEEECCCCCC------------------------------ChHHHHHHH-HhCCCEEEec
Confidence 468889999999999999999999876643 223332211 0123566666
Q ss_pred eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccc-cccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCc
Q psy7088 81 FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKF-RDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLP 159 (873)
Q Consensus 81 ~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f-~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lP 159 (873)
..+++.+++++++++++|+ .++|| .|.|+.+... +.+............-...-++...|+.|+|+|+.|++|
T Consensus 77 ~~~~~~~~~~i~~~~~~g~---~v~v~---~g~~~~~~~~a~~~~~~g~~~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~ 150 (336)
T 1ypf_A 77 RFQPEKRISFIRDMQSRGL---IASIS---VGVKEDEYEFVQQLAAEHLTPEYITIDIAHGHSNAVINMIQHIKKHLPES 150 (336)
T ss_dssp CSSGGGHHHHHHHHHHTTC---CCEEE---ECCSHHHHHHHHHHHHTTCCCSEEEEECSSCCSHHHHHHHHHHHHHCTTS
T ss_pred CCCCHHHHHHHHHHHhcCC---eEEEe---CCCCHHHHHHHHHHHhcCCCCCEEEEECCCCCcHHHHHHHHHHHHhCCCC
Confidence 6666667778888887775 45677 3555443110 000000000000000000014456899999999999988
Q ss_pred cchhhh
Q psy7088 160 IVCKDS 165 (873)
Q Consensus 160 l~lkgt 165 (873)
++++|.
T Consensus 151 ~vi~G~ 156 (336)
T 1ypf_A 151 FVIAGN 156 (336)
T ss_dssp EEEEEE
T ss_pred EEEECC
Confidence 888883
No 15
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=98.29 E-value=2.2e-07 Score=103.46 Aligned_cols=153 Identities=10% Similarity=0.069 Sum_probs=77.7
Q ss_pred CCCCCCCcceEc-CcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEE----
Q psy7088 3 NVCDRDSGLTVL-GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQ---- 77 (873)
Q Consensus 3 dVs~~DtsTtIf-G~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQ---- 77 (873)
+++++|++|+|+ |.+++.||++||+++ ++++|.+.| ++++|...+++ ++.++|++.+..+ ..+|+|
T Consensus 25 ~~~~vdlst~l~~g~~l~~Pii~Apm~~----~~~~ela~a--~a~aGglg~i~--~~~s~e~~~~~~~-~~~~~~~~~g 95 (404)
T 1eep_A 25 LPSEVSLKTQLTKNISLNIPFLSSAMDT----VTESQMAIA--IAKEGGIGIIH--KNMSIEAQRKEIE-KVKTYKFQKT 95 (404)
T ss_dssp CGGGCCCCEESSSSCEESSSEEECCCTT----TCSHHHHHH--HHHHTSEEEEC--SSSCHHHHHHHHH-HHHTCC----
T ss_pred CccccccceeccCCcccCCCEEeCCCCC----CCCHHHHHH--HHHCCCEEEEC--CCCCHHHHHHHHH-HHHhhccCCC
Confidence 678899999999 999999999999996 677777665 66666666665 5779999976543 234554
Q ss_pred EEeeCCHHHHH-HHHHHHHHc----CCcEEEEeeccCccCccccccc--c-ccccc--cc-------ccCcchhhh---h
Q psy7088 78 MYIFKDRALSL-QMVQRAERS----GYSAIVITMDTAVLGSRYHISK--F-RDISA--EE-------CSSGLTDYV---A 137 (873)
Q Consensus 78 LY~~~Dr~~~~-~LL~RAe~A----G~kALvvTVDtPv~G~RErd~~--f-~~~~~--~~-------~~~~~~~~v---~ 137 (873)
+|..+|....+ .++...... +++.+..+.|.|.. .|+.+.+ + .++.. .. ...+. ..+ .
T Consensus 96 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~G~-d~i~i~~ 173 (404)
T 1eep_A 96 INTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNA-CKDLNNKLRVGAAVSIDIDTIERVEELVKAHV-DILVIDS 173 (404)
T ss_dssp ----------------------------------CCTTC-CBCTTSCBCCEEEECSCTTHHHHHHHHHHTTC-SEEEECC
T ss_pred ceeccccccccccccccCCCCCHHHHHHHHHHhhhcchh-hhhcccCceEEEEeCCChhHHHHHHHHHHCCC-CEEEEeC
Confidence 55555543221 222211111 34555666676653 2332211 1 01100 00 00000 000 0
Q ss_pred hccCCCCCHHHHHHHHHhc-CCccchhhhh
Q psy7088 138 NQFDDSVDWDDVRSLVQAT-KLPIVCKDSL 166 (873)
Q Consensus 138 ~~~d~sltWeDL~wLR~~t-~lPl~lkgtl 166 (873)
..-++...|+.++|+|+.+ +.|+.++++.
T Consensus 174 ~~g~~~~~~e~i~~ir~~~~~~pviv~~v~ 203 (404)
T 1eep_A 174 AHGHSTRIIELIKKIKTKYPNLDLIAGNIV 203 (404)
T ss_dssp SCCSSHHHHHHHHHHHHHCTTCEEEEEEEC
T ss_pred CCCChHHHHHHHHHHHHHCCCCeEEEcCCC
Confidence 1123446799999999999 7899875443
No 16
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=98.26 E-value=4.8e-07 Score=99.52 Aligned_cols=125 Identities=10% Similarity=0.014 Sum_probs=85.2
Q ss_pred CC-CCCCCcceEc-----CcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEE
Q psy7088 3 NV-CDRDSGLTVL-----GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWL 76 (873)
Q Consensus 3 dV-s~~DtsTtIf-----G~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WF 76 (873)
++ +++||+|+|+ |.+++.||++||++. .+|.++|+|++++|...+++. +.++|++++.....+.++
T Consensus 35 ~~~~~vdl~t~l~~~~~~~~~l~~PIi~ApM~~------~~~~~lA~Ava~~Gglg~i~~--~~s~e~~~~~i~~~p~~l 106 (351)
T 2c6q_A 35 KSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDT------VGTFEMAKVLCKFSLFTAVHK--HYSLVQWQEFAGQNPDCL 106 (351)
T ss_dssp CCGGGCBCCEEEECTTTCCEEEECCEEECSSTT------TSCHHHHHHHHHTTCEEECCT--TCCHHHHHHHHHHCGGGC
T ss_pred CccccceeEEEeccccCcCccccCCEEECCCCC------CCcHHHHHHHHHCCCEEEEcC--CCCHHHHHHHHhhCchhh
Confidence 56 6899999999 999999999999883 578999999999999888874 678899866421111121
Q ss_pred -EEEe--eCCHHHHHHHHHHHHHc--CCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHH
Q psy7088 77 -QMYI--FKDRALSLQMVQRAERS--GYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRS 151 (873)
Q Consensus 77 -QLY~--~~Dr~~~~~LL~RAe~A--G~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~w 151 (873)
.+-. ..+.+.. +.++...++ |++++.+++. . | ++...|+.|+|
T Consensus 107 ~~v~~~~g~~~~~~-~~~~~l~~~~~g~~~i~i~~~--~-g----------------------------~~~~~~~~i~~ 154 (351)
T 2c6q_A 107 EHLAASSGTGSSDF-EQLEQILEAIPQVKYICLDVA--N-G----------------------------YSEHFVEFVKD 154 (351)
T ss_dssp TTEEEEECSSHHHH-HHHHHHHHHCTTCCEEEEECS--C-T----------------------------TBHHHHHHHHH
T ss_pred heeEeecCCChHHH-HHHHHHHhccCCCCEEEEEec--C-C----------------------------CcHHHHHHHHH
Confidence 1111 1222222 334444444 8887665432 1 2 01135899999
Q ss_pred HHHhc-CCccchhhhhh
Q psy7088 152 LVQAT-KLPIVCKDSLQ 167 (873)
Q Consensus 152 LR~~t-~lPl~lkgtl~ 167 (873)
+|+.| ++|+.++++++
T Consensus 155 lr~~~~~~~vi~g~v~t 171 (351)
T 2c6q_A 155 VRKRFPQHTIMAGNVVT 171 (351)
T ss_dssp HHHHCTTSEEEEEEECS
T ss_pred HHHhcCCCeEEEEeCCC
Confidence 99999 78999877654
No 17
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=98.07 E-value=4.9e-06 Score=102.70 Aligned_cols=140 Identities=18% Similarity=0.165 Sum_probs=102.2
Q ss_pred CCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceec-CCCC-------CC---------------
Q psy7088 4 VCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL-SLMS-------TT--------------- 60 (873)
Q Consensus 4 Vs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~L-St~S-------s~--------------- 60 (873)
+..+|++++++|.+++.||++||+++. ++...++++.+.|..+++ .|.+ +.
T Consensus 528 v~~v~ls~~~~G~~~~nPv~lAa~~~~------~~~~~~~~~~~~g~G~vv~~t~~~~~~~~gn~~pr~~~~~~~g~~~~ 601 (1025)
T 1gte_A 528 VDLVDISVEMAGLKFINPFGLASAAPT------TSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYG 601 (1025)
T ss_dssp GGGCCCCEEETTEEESSSEEECSSGGG------SSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCS
T ss_pred cccccceeeeccccccCcccccCCCCC------CCHHHHHHHHHCCcCeEEeceecccccccCCCCccEEeccccccccC
Confidence 457899999999999999999998763 445556777777877776 1111 11
Q ss_pred ---------------C-------HHHHHhcCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccc
Q psy7088 61 ---------------S-------LEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHIS 118 (873)
Q Consensus 61 ---------------S-------lEeIaaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~ 118 (873)
+ ++++.+..|+.+.|++++...+.+...+.+++++++|+++|.+++.+|.. .+++.
T Consensus 602 ~~~~~~~n~e~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~-~~~~~- 679 (1025)
T 1gte_A 602 PGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG-MGERG- 679 (1025)
T ss_dssp SCCSCEEECCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC-CC----
T ss_pred CchhheeeeccccchhHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCC-
Confidence 1 24455555677899999888899999999999999999999999999875 22211
Q ss_pred cccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhhhh
Q psy7088 119 KFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDSL 166 (873)
Q Consensus 119 ~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgtl 166 (873)
+ ...+ ..++.+.|+.++|+|+.++.|+.+|.+.
T Consensus 680 -~--------G~~~------~~~~~~~~~iv~~v~~~~~~Pv~vK~~~ 712 (1025)
T 1gte_A 680 -M--------GLAC------GQDPELVRNICRWVRQAVQIPFFAKLTP 712 (1025)
T ss_dssp -----------SBG------GGCHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred -c--------cccc------ccCHHHHHHHHHHHHHhhCCceEEEeCC
Confidence 0 0000 1234567899999999999999999754
No 18
>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=97.41 E-value=4.9e-05 Score=93.87 Aligned_cols=71 Identities=32% Similarity=0.436 Sum_probs=59.9
Q ss_pred ehhHHHHHH----------HHHHHHHHHHHHHHhhhcCCceeehhhhhHHHHHHHHHHHhhhcccCCcHHHHHHHhc---
Q psy7088 341 DLNKLITQR----------INADMHKSLDLAISKFEHGDITGVVELEGLLAVNRLCHKLLSKLLGLDDYDAMLHEAN--- 407 (873)
Q Consensus 341 dl~~li~qr----------~n~~~~~~l~~~i~rfe~~~l~~ivel~~ll~i~r~tH~lL~~~l~Ld~F~~~l~e~n--- 407 (873)
-...|+.|| +|.++.+.+..++.+- || .+|.|++...|+++++|+ .+.++|
T Consensus 745 Ry~~ll~QrhvqLLGRsIDL~~LI~QRln~~~~~~----------Le--~aI~rFEs~dL~~iveLe----~ll~i~r~t 808 (1253)
T 3p8c_A 745 RYETLLKQRHVQLLGRSIDLNRLITQRVSAAMYKS----------LE--LAIGRFESEDLTSIVELD----GLLEINRMT 808 (1253)
T ss_dssp CCHHHHTCSCEEETTEEECHHHHHHHHHHHHHHHH----------HH--HHHHHHHTSCGGGHHHHH----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHH----------HH--HHHHHHhhcCCchHHHHH----HHHHHHHHH
Confidence 345788888 8999999999998863 23 457788999999999999 888888
Q ss_pred ccCCCccchhHHH--HHHHhhc
Q psy7088 408 HNVLAPYGRITLH--IFWELNY 427 (873)
Q Consensus 408 ~~~~s~~~~i~~~--~~~e~~~ 427 (873)
|+++|.++.|+.+ |++|+|+
T Consensus 809 H~LLse~l~Ld~F~~ml~Ean~ 830 (1253)
T 3p8c_A 809 HKLLSRYLTLDGFDAMFREANH 830 (1253)
T ss_dssp HHHHHTTSCCCCHHHHHHHHTT
T ss_pred HHHHHHhCCCCCHHHHHHHhcc
Confidence 9999999999888 9999986
No 19
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=97.30 E-value=0.00031 Score=76.03 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=85.1
Q ss_pred CCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhcCCCCceEEEEE----ee
Q psy7088 6 DRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQNPSTTLWLQMY----IF 81 (873)
Q Consensus 6 ~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~p~g~~WFQLY----~~ 81 (873)
.+|++++++|.+++.||++|+ | .+.+|| .++++++.|+.++++ .+.+++... .. ..++|||+| +.
T Consensus 42 ~~~l~~~i~g~~l~npi~~aa-g----~~~~~~--~~~~~a~~G~g~i~~--~~~~~~~~~-g~-~~pr~~~~~~d~~~i 110 (336)
T 1f76_A 42 VPAKPVNCMGLTFKNPLGLAA-G----LDKDGE--CIDALGAMGFGSIEI--GTVTPRPQP-GN-DKPRLFRLVDAEGLI 110 (336)
T ss_dssp CCCCCEEETTEEESSSEEECT-T----SSTTCC--CHHHHHHTTCSEEEE--EEECSSCBC-CS-CSCCEEEETTTTEEE
T ss_pred CCCCCeEECCEEcCCCcEeCc-c----cCCcHH--HHHHHHHcCccEEEe--CCCCCCCCC-CC-CCcceeeccccceee
Confidence 489999999999999999994 4 366676 778888999988754 233444321 22 357999997 11
Q ss_pred -----CCHHHHHHHHHHHHHcCCc-EEEEee----ccCccCcccccc---------cccccccc---cccCcchhhhhhc
Q psy7088 82 -----KDRALSLQMVQRAERSGYS-AIVITM----DTAVLGSRYHIS---------KFRDISAE---ECSSGLTDYVANQ 139 (873)
Q Consensus 82 -----~Dr~~~~~LL~RAe~AG~k-ALvvTV----DtPv~G~RErd~---------~f~~~~~~---~~~~~~~~~v~~~ 139 (873)
.+.+ .+++++++++++++ .+++++ |+|... ...+. .++.+.-. ....+ . ...
T Consensus 111 n~~g~~~~g-~~~~~~~~~~~~~~~~~~v~i~~~~~~~i~~-~~~~~~~aa~~~~~g~d~iein~~sP~~~g-~---~~~ 184 (336)
T 1f76_A 111 NRMGFNNLG-VDNLVENVKKAHYDGVLGINIGKNKDTPVEQ-GKDDYLICMEKIYAYAGYIAINISSPNTPG-L---RTL 184 (336)
T ss_dssp ECCCCCBCC-HHHHHHHHHHCCCCSEEEEEECCCTTSCGGG-THHHHHHHHHHHGGGCSEEEEECCCSSSTT-G---GGG
T ss_pred ecCCCCCcC-HHHHHHHHHhcccCCcEEEEecCCCCCcccc-cHHHHHHHHHHHhccCCEEEEEccCCCCCC-c---ccc
Confidence 1111 35667777777665 688887 332110 01110 01100000 00001 1 112
Q ss_pred cCCCCCHHHHHHHHHhc---------CCccchhh
Q psy7088 140 FDDSVDWDDVRSLVQAT---------KLPIVCKD 164 (873)
Q Consensus 140 ~d~sltWeDL~wLR~~t---------~lPl~lkg 164 (873)
.++.+.|+.++++|+.+ +.|+.+|-
T Consensus 185 ~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi 218 (336)
T 1f76_A 185 QYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKI 218 (336)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred cCHHHHHHHHHHHHHHHHhhhhcccccCceEEEe
Confidence 24556799999999998 89999983
No 20
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=96.99 E-value=0.0019 Score=68.98 Aligned_cols=131 Identities=13% Similarity=0.097 Sum_probs=85.4
Q ss_pred CCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecC-CCCC--------------------------
Q psy7088 7 RDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILS-LMST-------------------------- 59 (873)
Q Consensus 7 ~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LS-t~Ss-------------------------- 59 (873)
+|++|+++|.+++.||++||.- ...++|. .+.+++.|+.+++. +.+.
T Consensus 2 ~dl~~~i~g~~l~nPi~~Aag~----~~~~~~~--~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~ 75 (314)
T 2e6f_A 2 MCLKLNLLDHVFANPFMNAAGV----LCSTEED--LRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPN 75 (314)
T ss_dssp CCCCEEETTEEESSSEEECTTS----SCSSHHH--HHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCB
T ss_pred CCcceEECCEecCCCcEECCCC----CCCCHHH--HHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCC
Confidence 5899999999999999999622 2444554 56688888887543 2221
Q ss_pred CCHH----HHHhc-C-CCCceEEEEEeeCCHHHHHHHHHHHHHcCCc---EEEEeeccCccCcccccccccccccccccC
Q psy7088 60 TSLE----EVRAQ-N-PSTTLWLQMYIFKDRALSLQMVQRAERSGYS---AIVITMDTAVLGSRYHISKFRDISAEECSS 130 (873)
Q Consensus 60 ~SlE----eIaaa-~-p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~k---ALvvTVDtPv~G~RErd~~f~~~~~~~~~~ 130 (873)
...+ ++... . ++.+..-|+. -.+.+...+.+++++++|++ +|.+++-+|.. .|.+ .|.
T Consensus 76 ~g~~~~~~~~~~~~~~~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~-~g~~--~~g--------- 142 (314)
T 2e6f_A 76 LGFDFYLKYASDLHDYSKKPLFLSIS-GLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV-PGKP--QVA--------- 142 (314)
T ss_dssp SCHHHHHHHHHHTCCTTTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS-TTCC--CGG---------
T ss_pred cCHHHHHHHHHHHhhcCCCcEEEEeC-CCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC-CCch--hhc---------
Confidence 1222 23322 1 3455666664 34666777888888888888 88888877765 2211 110
Q ss_pred cchhhhhhccCCCCCHHHHHHHHHhcCCccchhhh
Q psy7088 131 GLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDS 165 (873)
Q Consensus 131 ~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgt 165 (873)
.++...++.++++|+.++.|+.+|-.
T Consensus 143 ---------~~~~~~~~ii~~vr~~~~~Pv~vK~~ 168 (314)
T 2e6f_A 143 ---------YDFEAMRTYLQQVSLAYGLPFGVKMP 168 (314)
T ss_dssp ---------GSHHHHHHHHHHHHHHHCSCEEEEEC
T ss_pred ---------CCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 01112478899999999999999854
No 21
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=96.88 E-value=0.00061 Score=73.45 Aligned_cols=122 Identities=19% Similarity=0.048 Sum_probs=86.3
Q ss_pred ccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCC---------CHHHHHhcCCCCceEEEEEeeCCHHHH
Q psy7088 17 RYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT---------SLEEVRAQNPSTTLWLQMYIFKDRALS 87 (873)
Q Consensus 17 ~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~---------SlEeIaaa~p~g~~WFQLY~~~Dr~~~ 87 (873)
++..||++||++. .. +....+.+++.|.-.+++-+.+. +++.+ ....+++.|+||+ -++.+..
T Consensus 2 ~l~nri~~APM~~--~t----~~~~r~~~~~~G~gli~te~~~~~~~~~~~~~~~~~l-~~~~~~~~~~QL~-g~~~~~~ 73 (318)
T 1vhn_A 2 SLEVKVGLAPMAG--YT----DSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQIF-GSEPNEL 73 (318)
T ss_dssp ---CEEEECCCTT--TC----SHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHS-CCTTCTTEEEEEE-CSCHHHH
T ss_pred ccCCCEEECCCCC--CC----cHHHHHHHHHHCcCEEEeCCEEEcccccCCHhHHHhh-hCcCCCeEEEEeC-CCCHHHH
Confidence 4678999999883 32 46777778878877766644321 12233 2234678999998 6788888
Q ss_pred HHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchh
Q psy7088 88 LQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCK 163 (873)
Q Consensus 88 ~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lk 163 (873)
.+..++|+++ |++|-+++.+|....|... + | + .-..++.+.|+.++++|+.++.|+.+|
T Consensus 74 ~~aa~~a~~~-~d~Iein~gcP~~~~r~~~--~----------G-~---~l~~~~~~~~eiv~~v~~~~~~pv~vK 132 (318)
T 1vhn_A 74 SEAARILSEK-YKWIDLNAGCPVRKVVKEG--A----------G-G---ALLKDLRHFRYIVRELRKSVSGKFSVK 132 (318)
T ss_dssp HHHHHHHTTT-CSEEEEEECCCCHHHHHTT--C----------G-G---GGGSCHHHHHHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHHh-CCEEEEECCCCcHhcCCCC--c----------c-c---chhhCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999999 9999999999987555321 0 0 0 011245678999999999999999999
No 22
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=96.43 E-value=0.0026 Score=67.40 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=85.1
Q ss_pred CCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHH--hhcCCcee-----------------------cCCC-
Q psy7088 4 VCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAA--GMMDAIMI-----------------------LSLM- 57 (873)
Q Consensus 4 Vs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAA--a~aGip~~-----------------------LSt~- 57 (873)
++++|++++++|.+++.||++|| |+.+. ++ ...+++ ...|...+ ++..
T Consensus 2 ~~~~~l~~~~~g~~l~npi~~aa-g~~~~----~~-~~~~~~~~~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~g 75 (311)
T 1ep3_A 2 TENNRLSVKLPGLDLKNPIIPAS-GCFGF----GE-EYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIG 75 (311)
T ss_dssp CCCTTTCEEETTEEESSSEEECT-TSSTT----ST-TGGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCC
T ss_pred CCCCccceEECCEECCCCcEECC-CCCCC----CH-HHHHHHHhcCCCEEEeCeeccCccCCCCCCeEEECCcccccccC
Confidence 36899999999999999999999 44332 22 123443 33453321 1222
Q ss_pred -CCCCHHHH--------HhcCCCCceEEEEEeeCCHHHHHHHHHHHHH-cCCcEEEEeeccCccCccccccccccccccc
Q psy7088 58 -STTSLEEV--------RAQNPSTTLWLQMYIFKDRALSLQMVQRAER-SGYSAIVITMDTAVLGSRYHISKFRDISAEE 127 (873)
Q Consensus 58 -Ss~SlEeI--------aaa~p~g~~WFQLY~~~Dr~~~~~LL~RAe~-AG~kALvvTVDtPv~G~RErd~~f~~~~~~~ 127 (873)
.+.+.++. .+..++.+...|+.- .+.+...+..+++++ +|+++|-+.+.+|..-.|. + .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~p~~v~l~~-~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~-~-~-------- 144 (311)
T 1ep3_A 76 LQNPGLEVIMTEKLPWLNENFPELPIIANVAG-SEEADYVAVCAKIGDAANVKAIELNISCPNVKHGG-Q-A-------- 144 (311)
T ss_dssp CCBCCHHHHHHTHHHHHHHHCTTSCEEEEECC-SSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTT-E-E--------
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCCcEEEEEcC-CCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCch-h-h--------
Confidence 23344443 221345678888864 356677788899988 9999999998877642110 0 0
Q ss_pred ccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhhh
Q psy7088 128 CSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDS 165 (873)
Q Consensus 128 ~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgt 165 (873)
+. .++.+-++-++++|+.++.|+.+|-.
T Consensus 145 -------~g---~~~~~~~eii~~v~~~~~~pv~vk~~ 172 (311)
T 1ep3_A 145 -------FG---TDPEVAAALVKACKAVSKVPLYVKLS 172 (311)
T ss_dssp -------GG---GCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred -------hc---CCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 00 02233467899999999999988743
No 23
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=96.38 E-value=0.0097 Score=63.44 Aligned_cols=129 Identities=11% Similarity=0.097 Sum_probs=81.3
Q ss_pred CcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecC-CCCCCC--------------------------
Q psy7088 9 SGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILS-LMSTTS-------------------------- 61 (873)
Q Consensus 9 tsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LS-t~Ss~S-------------------------- 61 (873)
++|+++|.+++.||++|| | ..+.++|. .+++++.|..+++. +.+..+
T Consensus 2 l~~~i~g~~l~npv~~Aa-g---~~~~~~~~--~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g 75 (311)
T 1jub_A 2 LNTTFANAKFANPFMNAS-G---VHCMTIED--LEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLG 75 (311)
T ss_dssp CCEEETTEEESSSEEECT-T---SSCSSHHH--HHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSC
T ss_pred CceEECCEEcCCCcEECC-C---CCCCCHHH--HHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcc
Confidence 689999999999999996 2 23445554 46778888777663 222111
Q ss_pred HH----HHHhc---C-CCCceEEEEEeeCCHHHHHHHHHHHHHcCCc-EEEEeeccCccCcccccccccccccccccCcc
Q psy7088 62 LE----EVRAQ---N-PSTTLWLQMYIFKDRALSLQMVQRAERSGYS-AIVITMDTAVLGSRYHISKFRDISAEECSSGL 132 (873)
Q Consensus 62 lE----eIaaa---~-p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~k-ALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~ 132 (873)
.+ .+... . ++.+...|+. -.+.+...+.+++++++|+. +|.+.+-+|.. .|.+ .|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~-~g~~--~~g----------- 140 (311)
T 1jub_A 76 FDYYLDYVLKNQKENAQEGPIFFSIA-GMSAAENIAMLKKIQESDFSGITELNLSCPNV-PGEP--QLA----------- 140 (311)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCEEEEC-CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCS-SSCC--CGG-----------
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCeEEEEeccCCCC-CCcc--ccc-----------
Confidence 22 22211 1 1344555553 24556677778888888888 88888877765 2211 110
Q ss_pred hhhhhhccCCCCCHHHHHHHHHhcCCccchhhh
Q psy7088 133 TDYVANQFDDSVDWDDVRSLVQATKLPIVCKDS 165 (873)
Q Consensus 133 ~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgt 165 (873)
.++...++.++++|+.++.|+.+|-.
T Consensus 141 -------~~~e~~~~iv~~vr~~~~~Pv~vKi~ 166 (311)
T 1jub_A 141 -------YDFEATEKLLKEVFTFFTKPLGVKLP 166 (311)
T ss_dssp -------GCHHHHHHHHHHHTTTCCSCEEEEEC
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 01112378899999999999999854
No 24
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=94.30 E-value=0.042 Score=58.37 Aligned_cols=116 Identities=9% Similarity=0.159 Sum_probs=77.5
Q ss_pred CCceecCCCCCCCHHHHH------hc-CCCCceEEEEEee-------CCHHHHHHHHHHHHHcCCcEEEEeeccCccCcc
Q psy7088 49 DAIMILSLMSTTSLEEVR------AQ-NPSTTLWLQMYIF-------KDRALSLQMVQRAERSGYSAIVITMDTAVLGSR 114 (873)
Q Consensus 49 Gip~~LSt~Ss~SlEeIa------aa-~p~g~~WFQLY~~-------~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~R 114 (873)
|+...--|.+..+-||-. .. . .+..|++|++. .|...+.+..++..+.|++++.+++|.|+.++|
T Consensus 73 ~~~~lpNTag~~ta~eAv~~a~lare~~-~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd~~~akr 151 (265)
T 1wv2_A 73 RYTILPNTAGCYDAVEAVRTCRLARELL-DGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQ 151 (265)
T ss_dssp TSEEEEECTTCCSHHHHHHHHHHHHTTT-TSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSCHHHHHH
T ss_pred CCEECCcCCCCCCHHHHHHHHHHHHHHc-CCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 444433456666666652 23 3 35789999998 677777777777777899999999999999998
Q ss_pred cccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhhhhhhhhhh
Q psy7088 115 YHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDSLQQCCDL 172 (873)
Q Consensus 115 Erd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgtl~~~~dl 172 (873)
..+..=.-..+. +.+++.. .+-.+|+-|+++++..+.|++..|=+..-.|.
T Consensus 152 l~~~G~~aVmPl------g~pIGsG-~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDA 202 (265)
T 1wv2_A 152 LAEIGCIAVMPL------AGLIGSG-LGICNPYNLRIILEEAKVPVLVDAGVGTASDA 202 (265)
T ss_dssp HHHSCCSEEEEC------SSSTTCC-CCCSCHHHHHHHHHHCSSCBEEESCCCSHHHH
T ss_pred HHHhCCCEEEeC------CccCCCC-CCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHH
Confidence 765331111110 0111111 12258999999999999999998666655544
No 25
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=94.15 E-value=0.073 Score=58.77 Aligned_cols=117 Identities=9% Similarity=0.064 Sum_probs=74.1
Q ss_pred CCCCCCcceEc-CcccCCcceechhhhhhcCCChhHHHHHHHHhh-cCCceecCCCCCCCHHHHHh----c--CCCCceE
Q psy7088 4 VCDRDSGLTVL-GTRYRCPVGIAPSAMQKLAHADGEVATARAAGM-MDAIMILSLMSTTSLEEVRA----Q--NPSTTLW 75 (873)
Q Consensus 4 Vs~~DtsTtIf-G~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~-aGip~~LSt~Ss~SlEeIaa----a--~p~g~~W 75 (873)
.+++|++|+|. +..+..||+.||++.. .+..+|.|.++ -|+.++-. +.+.|+..+ . .+..+.-
T Consensus 29 ~~~vdl~t~l~~~~~l~~Pii~apM~~v------t~~~lA~avA~~GGlgii~~---~~s~e~~~~~I~~vk~~~~~pvg 99 (361)
T 3khj_A 29 PREVSLETKLTKNVSLKIPLISSAMDTV------TEHLMAVGMARLGGIGIIHK---NMDMESQVNEVLKVKNSGGLRVG 99 (361)
T ss_dssp GGGCCCCEESSSSCEESSSEEECSSTTT------CSHHHHHHHHHTTCEEEECS---SSCHHHHHHHHHHHHHTTCCCCE
T ss_pred HHHccCceecccccccCCCEEeecCCCC------CcHHHHHHHHHcCCCeEEec---CCCHHHHHHHHHHHHhccCceEE
Confidence 35789999998 7899999999998843 34566766554 45555443 455665532 1 2333344
Q ss_pred EEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHh
Q psy7088 76 LQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQA 155 (873)
Q Consensus 76 FQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~ 155 (873)
..+... + .+.++.+.++|+..|++ |++. |. +..-.+.++++|+.
T Consensus 100 a~ig~~-~----~e~a~~l~eaGad~I~l--d~a~-G~----------------------------~~~~~~~i~~i~~~ 143 (361)
T 3khj_A 100 AAIGVN-E----IERAKLLVEAGVDVIVL--DSAH-GH----------------------------SLNIIRTLKEIKSK 143 (361)
T ss_dssp EEECTT-C----HHHHHHHHHTTCSEEEE--CCSC-CS----------------------------BHHHHHHHHHHHHH
T ss_pred EEeCCC-H----HHHHHHHHHcCcCeEEE--eCCC-CC----------------------------cHHHHHHHHHHHHh
Confidence 455432 2 56788888999997654 4331 20 00113668999998
Q ss_pred cCCccchhhh
Q psy7088 156 TKLPIVCKDS 165 (873)
Q Consensus 156 t~lPl~lkgt 165 (873)
++.|+.++.+
T Consensus 144 ~~~~Vivg~v 153 (361)
T 3khj_A 144 MNIDVIVGNV 153 (361)
T ss_dssp CCCEEEEEEE
T ss_pred cCCcEEEccC
Confidence 8999887544
No 26
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=88.98 E-value=1.5 Score=48.30 Aligned_cols=137 Identities=10% Similarity=0.040 Sum_probs=84.9
Q ss_pred CCCCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecC-CC------------------------
Q psy7088 3 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILS-LM------------------------ 57 (873)
Q Consensus 3 dVs~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LS-t~------------------------ 57 (873)
.+.++|++|+++|.++.-||++|. +..-.++|. .++....|.-++.- |.
T Consensus 31 ~~~~~~L~~~~~Gl~~~NPv~lAA----G~~~~~~e~--~~~l~~~G~G~v~~ktvt~~pq~GNp~PR~~~~~~~~iN~~ 104 (354)
T 4ef8_A 31 GRGSMSLQVNLLNNTFANPFMNAA----GVMCTTTEE--LVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSM 104 (354)
T ss_dssp ---CCCCCEEETTEEESSSEEECT----TSSCSSHHH--HHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECC
T ss_pred CCCCCCcceEECCEECCCCCEecc----CCCCCCHHH--HHHHHHcCCCeEEeCcccCcccCCCCCCcEEecchhhhccC
Confidence 356789999999999999999885 332234443 44555555444331 11
Q ss_pred --CCCCHHHH----Hhc--CCCCceEEEEEeeCCHHHHHHHHHHHH---HcCCcEEEEeeccCccCcccccccccccccc
Q psy7088 58 --STTSLEEV----RAQ--NPSTTLWLQMYIFKDRALSLQMVQRAE---RSGYSAIVITMDTAVLGSRYHISKFRDISAE 126 (873)
Q Consensus 58 --Ss~SlEeI----aaa--~p~g~~WFQLY~~~Dr~~~~~LL~RAe---~AG~kALvvTVDtPv~G~RErd~~f~~~~~~ 126 (873)
.+..+|.+ .+. .++.+...|+. -.+.+...+.+++++ ++|+.+|.|.+=+|..... +.
T Consensus 105 G~~n~G~~~~~~~l~~~~~~~~~pvivsI~-G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg------~~---- 173 (354)
T 4ef8_A 105 GLPNNGFDFYLAYAAEQHDYGKKPLFLSMS-GLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGK------PQ---- 173 (354)
T ss_dssp CCCBCCHHHHHHHHHHTCCTTTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTS------CC----
T ss_pred CCCCcCHHHHHHHHHHHhhcCCCcEEEEec-cCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCc------hh----
Confidence 12344443 322 23456777873 346666777788887 6799999999998865210 00
Q ss_pred cccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhhhhh
Q psy7088 127 ECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDSLQ 167 (873)
Q Consensus 127 ~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgtl~ 167 (873)
+ ..++..-.+-++++|+.++.|+.+|-...
T Consensus 174 -----l------~~~~e~~~~il~av~~~~~~PV~vKi~p~ 203 (354)
T 4ef8_A 174 -----V------AYDFDAMRQCLTAVSEVYPHSFGVKMPPY 203 (354)
T ss_dssp -----G------GGSHHHHHHHHHHHHHHCCSCEEEEECCC
T ss_pred -----h------ccCHHHHHHHHHHHHHhhCCCeEEEecCC
Confidence 0 01222346778999999999999996543
No 27
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=88.34 E-value=0.52 Score=51.52 Aligned_cols=124 Identities=14% Similarity=0.127 Sum_probs=77.1
Q ss_pred cCCcceechhhhhhcCCChhHHHHHHHHhhcCC-ceecCCCCCC-C-----HHHHHhcC-CCCceEEEEEeeCCHHHHHH
Q psy7088 18 YRCPVGIAPSAMQKLAHADGEVATARAAGMMDA-IMILSLMSTT-S-----LEEVRAQN-PSTTLWLQMYIFKDRALSLQ 89 (873)
Q Consensus 18 ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGi-p~~LSt~Ss~-S-----lEeIaaa~-p~g~~WFQLY~~~Dr~~~~~ 89 (873)
+.-||++||++. . .+......+.+.|- -.+.+-+.+. . -+++.+.. .+.+.+.||. -.+.+...+
T Consensus 2 l~nriv~APM~g--~----td~~~r~~~r~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~-g~~p~~~~~ 74 (350)
T 3b0p_A 2 LDPRLSVAPMVD--R----TDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPEEHPIALQLA-GSDPKSLAE 74 (350)
T ss_dssp CCCSEEECCCTT--T----SSHHHHHHHHHHCSSSBEECCCEEHHHHHHSCHHHHHCCCGGGCSEEEEEE-CSCHHHHHH
T ss_pred CCCCEEECCCCC--C----CHHHHHHHHHHcCCCCEEEeCCEEechhhcCCHHHHhccCCCCCeEEEEeC-CCCHHHHHH
Confidence 567999999984 2 34444445555543 3333322211 1 12343322 2467899998 567888888
Q ss_pred HHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhh
Q psy7088 90 MVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKD 164 (873)
Q Consensus 90 LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkg 164 (873)
..++|+++||+.|-+.+.+|..-.|... + | +.. ..++.+-.+-++.+++.++.|+.+|-
T Consensus 75 aA~~a~~~G~D~IeIn~gcP~~~~~~d~--~----------G-~~l---~~~~~~~~eiv~av~~~v~~PV~vKi 133 (350)
T 3b0p_A 75 AARIGEAFGYDEINLNLGCPSEKAQEGG--Y----------G-ACL---LLDLARVREILKAMGEAVRVPVTVKM 133 (350)
T ss_dssp HHHHHHHTTCSEEEEEECCCSHHHHHTT--C----------G-GGG---GGCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHcCCCEEEECCcCCCCcCcCCC--c----------c-hhH---HhCHHHHHHHHHHHHHHhCCceEEEE
Confidence 8999999999999999998876433210 0 0 000 11333456778899998999998863
No 28
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=83.28 E-value=4 Score=44.77 Aligned_cols=99 Identities=11% Similarity=0.037 Sum_probs=64.1
Q ss_pred CCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecC-CCC--------------------------
Q psy7088 6 DRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILS-LMS-------------------------- 58 (873)
Q Consensus 6 ~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LS-t~S-------------------------- 58 (873)
.+|++|+++|.++.-||++|. +..-.++ ...+++...|.-+++. |.+
T Consensus 35 m~~L~~~~~Gl~~~NPv~lAa----G~~~~~~--e~~~~~~~~G~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~ 108 (345)
T 3oix_A 35 MVSTHTTIGSFDFDNCLMNAA----GVYCMTR--EELAAIDHSEAGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLP 108 (345)
T ss_dssp -CCCCEEETTEEESCSEEECT----TSSCSSH--HHHHHHHTSSCSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCC
T ss_pred cCCcCeEECCEECCCCCEEcC----CCCCCCH--HHHHHHHHcCCCeEEeeeecCCCCCCCCCCcEEecccchhccCCCC
Confidence 368999999999999999992 3221222 3445566666655543 222
Q ss_pred CCCHH----HHHh---cCCCCceEEEEEeeCCHHHHHHHHHHHHHcCCc-EEEEeeccCcc
Q psy7088 59 TTSLE----EVRA---QNPSTTLWLQMYIFKDRALSLQMVQRAERSGYS-AIVITMDTAVL 111 (873)
Q Consensus 59 s~SlE----eIaa---a~p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~k-ALvvTVDtPv~ 111 (873)
+..+| ++.. ...+.+...|+. -.+.+...+.+++++++|+. +|.|.+=+|..
T Consensus 109 n~G~~~~~~~l~~~~~~~~~~pvivsI~-g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~ 168 (345)
T 3oix_A 109 NLGINYYLDYVTELQKQPDSKNHFLSLV-GMSPEETHTILXMVEASKYQGLVELNLSCPNV 168 (345)
T ss_dssp BSCHHHHHHHHHHHHHSTTCCCCEEEEC-CSSHHHHHHHHHHHHHSSCCSEEEEECSCCCS
T ss_pred ChhHHHHHHHHHHHhhccCCCCEEEEec-CCCHHHHHHHHHHHhccCCCcEEEEecCCCCc
Confidence 12233 3332 223567788885 34667777888888889988 89999988764
No 29
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=82.61 E-value=1.1 Score=48.47 Aligned_cols=151 Identities=11% Similarity=0.076 Sum_probs=84.4
Q ss_pred ceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHh----c--CCCCceEEEEEeeCCH
Q psy7088 11 LTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRA----Q--NPSTTLWLQMYIFKDR 84 (873)
Q Consensus 11 TtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaa----a--~p~g~~WFQLY~~~Dr 84 (873)
+++|| +..||+.||++. +. ...++.++.++|..-++.+. ..+.+++.+ . ..+.+...|++.....
T Consensus 6 ~~~l~--~~~Pii~apM~g--~s----~~~la~av~~aG~lG~i~~~-~~~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~ 76 (332)
T 2z6i_A 6 TELLK--IDYPIFQGGMAW--VA----DGDLAGAVSKAGGLGIIGGG-NAPKEVVKANIDKIKSLTDKPFGVNIMLLSPF 76 (332)
T ss_dssp HHHHT--CSSSEEECCCTT--TC----CHHHHHHHHHHTSBEEEECT-TCCHHHHHHHHHHHHHHCCSCEEEEECTTSTT
T ss_pred hHHhC--CCCCEEeCCCCC--CC----cHHHHHHHHhCCCcEEeCCC-CCCHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 34566 678999999983 42 34577778888864444332 234444321 1 1235677888763221
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeccCccCccc-cccccc------cccc-----ccccCc--c-hhhhhhccCCCCCHHHH
Q psy7088 85 ALSLQMVQRAERSGYSAIVITMDTAVLGSRY-HISKFR------DISA-----EECSSG--L-TDYVANQFDDSVDWDDV 149 (873)
Q Consensus 85 ~~~~~LL~RAe~AG~kALvvTVDtPv~G~RE-rd~~f~------~~~~-----~~~~~~--~-~~~v~~~~d~sltWeDL 149 (873)
..+.+++|.++|+++|.+..+.|..=-+. +...+. .... ...... . +...+.......+|+-+
T Consensus 77 --~~~~~~~a~~~g~d~V~~~~g~p~~~i~~l~~~g~~v~~~v~~~~~a~~~~~~GaD~i~v~g~~~GG~~g~~~~~~ll 154 (332)
T 2z6i_A 77 --VEDIVDLVIEEGVKVVTTGAGNPSKYMERFHEAGIIVIPVVPSVALAKRMEKIGADAVIAEGMEAGGHIGKLTTMTLV 154 (332)
T ss_dssp --HHHHHHHHHHTTCSEEEECSSCGGGTHHHHHHTTCEEEEEESSHHHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHH
T ss_pred --HHHHHHHHHHCCCCEEEECCCChHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEEECCCCCCCCCCccHHHHH
Confidence 45678999999999999988765211000 000000 0000 000000 0 00001111234689999
Q ss_pred HHHHHhcCCccchhhhhhhhhhh
Q psy7088 150 RSLVQATKLPIVCKDSLQQCCDL 172 (873)
Q Consensus 150 ~wLR~~t~lPl~lkgtl~~~~dl 172 (873)
+.+++..+.|++..|=+..-.|.
T Consensus 155 ~~i~~~~~iPViaaGGI~~~~~~ 177 (332)
T 2z6i_A 155 RQVATAISIPVIAAGGIADGEGA 177 (332)
T ss_dssp HHHHHHCSSCEEEESSCCSHHHH
T ss_pred HHHHHhcCCCEEEECCCCCHHHH
Confidence 99999999999988877754454
No 30
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=81.37 E-value=2.7 Score=45.71 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=40.2
Q ss_pred CCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceec-CCCCCCCHHHHHhcCCCCceEEEE
Q psy7088 5 CDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL-SLMSTTSLEEVRAQNPSTTLWLQM 78 (873)
Q Consensus 5 s~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~L-St~Ss~SlEeIaaa~p~g~~WFQL 78 (873)
.+.|++|+++|.+++.||++|. +.+..++|..-+-++ .|.-++. .|.+..+ ...+ ..+++|.+
T Consensus 33 ~~~~L~v~~~Gl~f~NPvglAa----G~~~~~~e~~~~l~~--~G~G~v~~~tvt~~p----q~GN-p~PR~~~l 96 (354)
T 3tjx_A 33 GSMSLQVNLLNNTFANPFMNAA----GVMCTTTEELVAMTE--SASGSLVSKSCTPAL----REGN-PTPRYQAL 96 (354)
T ss_dssp CCCCCCEEETTEEESSSEEECT----TSSCSSHHHHHHHHH--SSCSCEEEEEECSSC----BCCS-CSCCEEEE
T ss_pred CCCceeEEECCEEcCCCcEEcc----CCCCCCHHHHHHHHH--cCCCEEEeCCcCccc----ccCC-CCCeEEEc
Confidence 4679999999999999999994 445777876544444 4444333 3433221 1122 35788877
No 31
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=80.88 E-value=4.3 Score=43.48 Aligned_cols=152 Identities=11% Similarity=0.068 Sum_probs=84.3
Q ss_pred ceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHH-------hcCCCCceEEEEEeeC-
Q psy7088 11 LTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVR-------AQNPSTTLWLQMYIFK- 82 (873)
Q Consensus 11 TtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIa-------aa~p~g~~WFQLY~~~- 82 (873)
+++|| +..||+.||++. +. +..+|.|+.++|..-++...+..+.+++. +.. +.+.-.++++..
T Consensus 9 ~~~l~--~~~Pii~apM~g--vs----~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~-~~p~~v~l~v~~~ 79 (328)
T 2gjl_A 9 TETFG--VEHPIMQGGMQW--VG----RAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELT-DRPFGVNLTLLPT 79 (328)
T ss_dssp HHHHT--CSSSEEECCCTT--TC----SHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHC-SSCCEEEEEECCC
T ss_pred HHHhC--CCCCEEECCCCC--CC----cHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecccc
Confidence 45665 468999999963 32 35688888888865555443333455542 222 345667888851
Q ss_pred --CHHHHHHHHHHHHHcCCcEEEEeeccCccCccc-cccccc---cccc-c-------cccCcc---hhhhhhcc--CCC
Q psy7088 83 --DRALSLQMVQRAERSGYSAIVITMDTAVLGSRY-HISKFR---DISA-E-------ECSSGL---TDYVANQF--DDS 143 (873)
Q Consensus 83 --Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RE-rd~~f~---~~~~-~-------~~~~~~---~~~v~~~~--d~s 143 (873)
+++ ..+.++.+.++|++.|.+..+.|..=.+. +..... .... . .....+ +...+... ...
T Consensus 80 ~~~~~-~~~~~~~~~~~g~d~V~~~~g~p~~~~~~l~~~gi~vi~~v~t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~ 158 (328)
T 2gjl_A 80 QKPVP-YAEYRAAIIEAGIRVVETAGNDPGEHIAEFRRHGVKVIHKCTAVRHALKAERLGVDAVSIDGFECAGHPGEDDI 158 (328)
T ss_dssp SSCCC-HHHHHHHHHHTTCCEEEEEESCCHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEEECTTCSBCCCSSCC
T ss_pred ccCcc-HHHHHHHHHhcCCCEEEEcCCCcHHHHHHHHHcCCCEEeeCCCHHHHHHHHHcCCCEEEEECCCCCcCCCCccc
Confidence 121 45678889999999999888765100000 000000 0000 0 000000 00000010 023
Q ss_pred CCHHHHHHHHHhcCCccchhhhhhhhhhh
Q psy7088 144 VDWDDVRSLVQATKLPIVCKDSLQQCCDL 172 (873)
Q Consensus 144 ltWeDL~wLR~~t~lPl~lkgtl~~~~dl 172 (873)
.+|+-++.+++..+.|++..|=+..-.|.
T Consensus 159 ~~~~~l~~v~~~~~iPviaaGGI~~~~~v 187 (328)
T 2gjl_A 159 PGLVLLPAAANRLRVPIIASGGFADGRGL 187 (328)
T ss_dssp CHHHHHHHHHTTCCSCEEEESSCCSHHHH
T ss_pred cHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 68999999999889999888877554444
No 32
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=80.63 E-value=1.8 Score=47.80 Aligned_cols=93 Identities=17% Similarity=0.075 Sum_probs=56.4
Q ss_pred CCCCCCcceEc-CcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHhc----CCCCceEEEE
Q psy7088 4 VCDRDSGLTVL-GTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ----NPSTTLWLQM 78 (873)
Q Consensus 4 Vs~~DtsTtIf-G~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa----~p~g~~WFQL 78 (873)
.+++|++|.+. +..+..||+.||++.. .|..+|.|.+++|-.-++.. +.+.|+..+. ...++.-..+
T Consensus 30 ~~~vdl~t~lt~~~~l~~Pii~apM~~v------s~~~lA~avA~aGGlg~i~~--~~s~e~~~~~i~~vk~~~~l~vga 101 (366)
T 4fo4_A 30 PNTADLRTRLTKNIALNIPMVSASMDTV------TEARLAIALAQEGGIGFIHK--NMSIEQQAAQVHQVKISGGLRVGA 101 (366)
T ss_dssp GGGCBCCEEEETTEEESSSEEECCCTTT------CSHHHHHHHHHTTCEEEECS--SSCHHHHHHHHHHHHTTTSCCCEE
T ss_pred hhhcccceecccccccCCCEEeCCCCCC------ChHHHHHHHHHcCCceEeec--CCCHHHHHHHHHHHHhcCceeEEE
Confidence 35789999998 5789999999998843 34577767666655444432 3566665321 1111111222
Q ss_pred EeeCCHHHHHHHHHHHHHcCCcEEEEe
Q psy7088 79 YIFKDRALSLQMVQRAERSGYSAIVIT 105 (873)
Q Consensus 79 Y~~~Dr~~~~~LL~RAe~AG~kALvvT 105 (873)
-+..+ ....+.++.+.++|++.|+++
T Consensus 102 ~vg~~-~~~~~~~~~lieaGvd~I~id 127 (366)
T 4fo4_A 102 AVGAA-PGNEERVKALVEAGVDVLLID 127 (366)
T ss_dssp ECCSC-TTCHHHHHHHHHTTCSEEEEE
T ss_pred EeccC-hhHHHHHHHHHhCCCCEEEEe
Confidence 22111 124566788889999987764
No 33
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=79.38 E-value=1.6 Score=45.80 Aligned_cols=149 Identities=11% Similarity=0.179 Sum_probs=77.8
Q ss_pred cceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceec---C--------------------------CCCCC
Q psy7088 10 GLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMIL---S--------------------------LMSTT 60 (873)
Q Consensus 10 sTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~L---S--------------------------t~Ss~ 60 (873)
.++|-|.++..|++++..|. |+.|.-. ++..+.|.-.+. + +....
T Consensus 3 ~~~i~~~~~~~~~~~~t~g~-----p~~~~~~-~~l~~~Gad~ielg~pr~~~~g~~~~~~~~~l~~~~~~~~pn~~~~~ 76 (264)
T 1xm3_A 3 MLTIGGKSFQSRLLLGTGKY-----PSFDIQK-EAVAVSESDILTFAVRRMNIFEASQPNFLEQLDLSKYTLLPNTAGAS 76 (264)
T ss_dssp CEEETTEEESCCEEEECSCS-----SCHHHHH-HHHHHHTCSEEEEETTSSTTC-------CTTCCGGGSEEEEECTTCS
T ss_pred CeEECCEEecCCCEEEecCC-----CCHHHHH-HHHHHcCCeEEEEcccccccCCCCHHHHHHHHHhcCCeEcCCccccC
Confidence 46899999999999998764 5554322 333333322111 1 11112
Q ss_pred CHHHH------HhcCCCCceEEEEEeeCCH----HHHHHHHHHHHHc---CCcEEEEeeccCccCccccccccccccccc
Q psy7088 61 SLEEV------RAQNPSTTLWLQMYIFKDR----ALSLQMVQRAERS---GYSAIVITMDTAVLGSRYHISKFRDISAEE 127 (873)
Q Consensus 61 SlEeI------aaa~p~g~~WFQLY~~~Dr----~~~~~LL~RAe~A---G~kALvvTVDtPv~G~RErd~~f~~~~~~~ 127 (873)
+.|+. ++.+ ++.-|+++++..|. +...+++++|++. |...++++++++...+|-.+..-.-..
T Consensus 77 ~~~~~~~f~~~a~~a-gg~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~~vi~~~~~~~~~a~~~~~~gad~v~--- 152 (264)
T 1xm3_A 77 TAEEAVRIARLAKAS-GLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIM--- 152 (264)
T ss_dssp SHHHHHHHHHHHHHT-TCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBE---
T ss_pred CHHHHHHHHHHHHHc-CCCCeEEEeecCCCcccccchHHHHHHHHHHHCCCeEEEEEcCCCHHHHHHHHHhCCCEEE---
Confidence 33321 1111 13457788766554 3345777777777 888877777654322211110000000
Q ss_pred ccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhhhhhhhhhh
Q psy7088 128 CSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDSLQQCCDL 172 (873)
Q Consensus 128 ~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgtl~~~~dl 172 (873)
.. +...+.. ....+|+.++++++.++.|+++.|=++.-.|.
T Consensus 153 ~~---~~~~Gt~-~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda 193 (264)
T 1xm3_A 153 PG---ASPIGSG-QGILNPLNLSFIIEQAKVPVIVDAGIGSPKDA 193 (264)
T ss_dssp EC---SSSTTCC-CCCSCHHHHHHHHHHCSSCBEEESCCCSHHHH
T ss_pred EC---CcccCCC-CCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHH
Confidence 00 0001111 12236999999999999999987545444443
No 34
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=73.74 E-value=0.77 Score=45.33 Aligned_cols=58 Identities=28% Similarity=0.449 Sum_probs=44.3
Q ss_pred CCccCCCCCCCeeeeccccchHHHHHHhHhhhcccCCCCcchhHHhhcCcccchhHHHHHHhcccccccccccceecchh
Q psy7088 711 PIWVGPPPTNGVINIDECTEFHRLWSALQFVYCIPVGDTEFTVEELFGEGLNWAGCTMIVLLGQQRRFEALDFCYHILRV 790 (873)
Q Consensus 711 ~~W~g~~p~ngv~~id~~~eF~RlWSaLQF~~C~p~~~~~~~~~e~fGDGl~WaGctII~LLgQq~rFe~lDF~yhil~V 790 (873)
..|...+|..=+ -||+|-++| ||..+. .-.++|.||||.+ .+.||+-.|-|+
T Consensus 82 g~~~~~~ptdP~--------iYR~yE~v~-vYG~~~---K~li~E~FGDGIM----------------SAIdF~~~v~k~ 133 (156)
T 1dw9_A 82 GCIDDRIPTDPT--------MYRFYEMLQ-VYGTTL---KALVHEKFGDGII----------------SAINFKLDVKKV 133 (156)
T ss_dssp CCCSSSSCCSHH--------HHHHHHHHH-HHHHHH---HHHHHHHTCSEEE----------------EEEEEEEEEEEE
T ss_pred CCCCCCCCCCCe--------ehhHHHHHH-HhhHHH---HHHHHHHcCcceE----------------eeeeeeeeeEee
Confidence 467766774433 599999999 665553 2368899999998 678999999999
Q ss_pred hcccCC
Q psy7088 791 QRVDGR 796 (873)
Q Consensus 791 ~~~d~~ 796 (873)
..-+|.
T Consensus 134 ~dp~Gd 139 (156)
T 1dw9_A 134 ADPEGG 139 (156)
T ss_dssp ECTTSS
T ss_pred cCCCCC
Confidence 877764
No 35
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=69.56 E-value=7.1 Score=42.58 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=36.7
Q ss_pred CCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHH-------hcCCCCceEEEEEeeCC
Q psy7088 19 RCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVR-------AQNPSTTLWLQMYIFKD 83 (873)
Q Consensus 19 s~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIa-------aa~p~g~~WFQLY~~~D 83 (873)
..||+.||+++ +. ....+|.|+.++|-.-++++ ...+.|++. +.. +++.-.+++.+++
T Consensus 10 ~~Pii~apMag-gv----s~~~la~av~~aGglG~i~~-~~~s~~~l~~~i~~~~~~~-~~p~gVnl~~~~~ 74 (369)
T 3bw2_A 10 PLPIVQAPMAG-GV----SVPQLAAAVCEAGGLGFLAA-GYKTADGMYQEIKRLRGLT-GRPFGVNVFMPQP 74 (369)
T ss_dssp SSSEEECCCTT-TT----SCHHHHHHHHHTTSBEEEEC-TTSCHHHHHHHHHHHHHHC-CSCEEEEEECCCC
T ss_pred cCCEEeCCCCC-CC----CcHHHHHHHHHCCCEEEcCC-CCCCHHHHHHHHHHHHHhC-CCCeEEEEecCCC
Confidence 78999999985 22 44678888888987666654 334555553 222 2345566666543
No 36
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=58.00 E-value=14 Score=46.42 Aligned_cols=227 Identities=15% Similarity=0.250 Sum_probs=130.3
Q ss_pred hccceecccceehhHHHHHHHHHHHHHHHHHHHHhhhc--CCceeehhhhhHHHHHHHHHHHhhhcccCCcHHHHHHHhc
Q psy7088 330 QRHVQLLGRSIDLNKLITQRINADMHKSLDLAISKFEH--GDITGVVELEGLLAVNRLCHKLLSKLLGLDDYDAMLHEAN 407 (873)
Q Consensus 330 Q~~v~lLGr~idl~~li~qr~n~~~~~~l~~~i~rfe~--~~l~~ivel~~ll~i~r~tH~lL~~~l~Ld~F~~~l~e~n 407 (873)
.+.+.+.-..+-.+.-+.|++-..+++.|-..+. ++. +++.-=-||+..+..-=-.=+.+..++.+| =..+++++-
T Consensus 692 ~~~i~V~dh~f~PrEyL~~~Le~~f~~~l~~~~~-~~~~~~~i~RPSell~~l~a~m~vlq~~e~~v~iD-vt~~i~~vL 769 (1128)
T 3p8c_B 692 VPNMVVWEHTFTPREYLTSHLEIRFTKSIVGMTM-YNQATQEIAKPSELLTSVRAYMTVLQSIENYVQID-ITRVFNNVL 769 (1128)
T ss_dssp CSCEEETTEEECHHHHHHHHHHHHHHHHHHHHTT-CBTTTTBCCCHHHHHHHHHHHHHHHHHGGGTSSCC-HHHHHHHHH
T ss_pred CCCeeEEeeeeccHHHHHHHHHHHHHHHHHHHhc-cCCCccccCChHHHHHHHHHHHHHHHHHHHHhcch-HHHHHHHHH
Confidence 3456677777777888888888888888877773 332 444333344444333222224555666776 222233222
Q ss_pred --cc-CCCccc--hhHHH-HHHHhhcCcCcccccCCCcchHHHHHHHhhhcCCccccccccCCccccccccccccccccc
Q psy7088 408 --HN-VLAPYG--RITLH-IFWELNYDFLPNYCYNGATNRITLHIFWELNYDFLPNYCYNGATNRFIKCRGIMFTQQIHR 481 (873)
Q Consensus 408 --~~-~~s~~~--~i~~~-~~~e~~~d~~~~y~~~~~~~rit~~vf~el~~d~~pnycyn~~t~rFvr~~~~~~~~~~~r 481 (873)
++ +...+| +|+.. .=|.++ -+.+-.+ -++.+|..+-+-||..+. +.
T Consensus 770 Lqqtq~~D~~G~~tit~~yt~WYle------------------~llr~~s---~~~iv~sp~~~~Fvs~~~----~g--- 821 (1128)
T 3p8c_B 770 LQQTQHLDSHGEPTITSLYTNWYLE------------------TLLRQVS---NGHIAYFPAMKAFVNLPT----EN--- 821 (1128)
T ss_dssp HHTTSSBCTTSCBCHHHHHHHHHHH------------------THHHHHH---TTSEEEETTTTEEEECSS----SC---
T ss_pred HHhCCccccCCCccHHHHHHHHHHH------------------HHHHhcc---CCceEEccHHHHhhcCCC----CC---
Confidence 10 011112 11111 111111 1222233 357788888888886540 00
Q ss_pred cCCCCCcccccccchhHHHHHHHHHhhcccccChHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc
Q psy7088 482 EKLPPMTHTYSWGSKQLNMAYYSIYGQYTGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMP 561 (873)
Q Consensus 482 ~~~p~~~~~~~~g~~~l~~a~~~~~~~~~~f~g~~H~~a~~rLlg~~~i~~~i~ell~~~~~~i~~~~~~yv~~l~~~mP 561 (873)
.++..+ +.|. ....++|+|+|+|+-|+-.+=+.|+.++-+.++. |+-.|..=++.+=
T Consensus 822 --~~~f~A----------E~~t----------D~~ELrAL~eLiGPYG~k~l~~~L~~hi~~~v~e-lk~~v~~N~~~L~ 878 (1128)
T 3p8c_B 822 --ELTFNA----------EEYS----------DISEMRSLSELLGPYGMKFLSESLMWHISSQVAE-LKKLVVENVDVLT 878 (1128)
T ss_dssp --CCCSCT----------HHHH----------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTHHHHH
T ss_pred --CCCcCH----------HhcC----------CHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHH
Confidence 111111 3343 3457899999999999999999999999999864 6666544433221
Q ss_pred cccCCCCCCCCChhHHHHHHHhccccccCchhhHHHHHHHHhhhhHHHHHHHHHHhhch
Q psy7088 562 KQCKLPRYDYGSPGVLGYYHAQLNDIVQYPDAKTELFHNFRELGNTILFCLLMEQALSQ 620 (873)
Q Consensus 562 k~~kLP~~dyGs~G~l~yy~~~L~~~~~Y~dLk~evfq~fREiGN~i~f~~lLd~aL~q 620 (873)
. -+.-|..+..+ .+.|+.+ + | -..|++-+-.||+++-|=.++-+||+.
T Consensus 879 ~----lr~~~~~~~~m---~~~lk~l-~--~-~d~~l~r~~~iG~iL~FR~ll~eAl~~ 926 (1128)
T 3p8c_B 879 Q----MRTSFDKPDQM---AALFKRL-S--S-VDSVLKRMTIIGVILSFRSLAQEALRD 926 (1128)
T ss_dssp H----HHHCTTCHHHH---HHHHTTC-C--C-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----HHHhcCCHHHH---HHHHHhh-c--c-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01233344444 3444443 2 2 338999999999999999999999964
No 37
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=52.09 E-value=22 Score=38.22 Aligned_cols=148 Identities=7% Similarity=0.119 Sum_probs=80.4
Q ss_pred ccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHH----hc--CCCCceEEEEEeeCCHHHHHHH
Q psy7088 17 RYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVR----AQ--NPSTTLWLQMYIFKDRALSLQM 90 (873)
Q Consensus 17 ~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIa----aa--~p~g~~WFQLY~~~Dr~~~~~L 90 (873)
.+..||+.||++. . ....+|.|+.++|..-+++. ...+.|++. +. ..+.+.-.++.....+ ..+.
T Consensus 24 ~~~~Pii~apM~g--v----s~~~la~av~~aGglG~i~~-~~~~~~~l~~~i~~i~~~~~~p~gVnl~~~~~~--~~~~ 94 (326)
T 3bo9_A 24 EIEHPILMGGMAW--A----GTPTLAAAVSEAGGLGIIGS-GAMKPDDLRKAISELRQKTDKPFGVNIILVSPW--ADDL 94 (326)
T ss_dssp TCSSSEEECCCTT--T----SCHHHHHHHHHTTSBEEEEC-TTCCHHHHHHHHHHHHTTCSSCEEEEEETTSTT--HHHH
T ss_pred CCCCCEEECCCCC--C----CCHHHHHHHHhCCCcEEeCC-CCCCHHHHHHHHHHHHHhcCCCEEEEEeccCCC--HHHH
Confidence 4578999999984 3 23457888888886555543 223555432 11 1123445566542221 3567
Q ss_pred HHHHHHcCCcEEEEeeccCccCccc-cccc---cccccc--------ccccCcc---hhhhhhccCCCCCHHHHHHHHHh
Q psy7088 91 VQRAERSGYSAIVITMDTAVLGSRY-HISK---FRDISA--------EECSSGL---TDYVANQFDDSVDWDDVRSLVQA 155 (873)
Q Consensus 91 L~RAe~AG~kALvvTVDtPv~G~RE-rd~~---f~~~~~--------~~~~~~~---~~~v~~~~d~sltWeDL~wLR~~ 155 (873)
++.+.++|++.|.+..+.|..=.+. +... +..... ......+ +...+.......+|+-++.+++.
T Consensus 95 ~~~~~~~g~d~V~l~~g~p~~~~~~l~~~g~~v~~~v~s~~~a~~a~~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~ 174 (326)
T 3bo9_A 95 VKVCIEEKVPVVTFGAGNPTKYIRELKENGTKVIPVVASDSLARMVERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRS 174 (326)
T ss_dssp HHHHHHTTCSEEEEESSCCHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCcHHHHHHHHHcCCcEEEEcCCHHHHHHHHHcCCCEEEEECCCCCccCCCccHHHHHHHHHHH
Confidence 8888889999999877654100000 0000 000000 0000000 00001111134689999999999
Q ss_pred cCCccchhhhhhhhhhhh
Q psy7088 156 TKLPIVCKDSLQQCCDLS 173 (873)
Q Consensus 156 t~lPl~lkgtl~~~~dls 173 (873)
.+.|++..|=+..-.|..
T Consensus 175 ~~iPviaaGGI~~~~dv~ 192 (326)
T 3bo9_A 175 VNIPVIAAGGIADGRGMA 192 (326)
T ss_dssp CSSCEEEESSCCSHHHHH
T ss_pred cCCCEEEECCCCCHHHHH
Confidence 999999988887666653
No 38
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=49.65 E-value=33 Score=35.01 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHhcCCccchhhhhhhhhhhhhh
Q psy7088 144 VDWDDVRSLVQATKLPIVCKDSLQQCCDLSQL 175 (873)
Q Consensus 144 ltWeDL~wLR~~t~lPl~lkgtl~~~~dls~L 175 (873)
.+|+-++++++.++.|++..|=++...|+..+
T Consensus 187 ~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~ 218 (266)
T 2w6r_A 187 YDTEMIRFVRPLTTLPIIASGGAGKMEHFLEA 218 (266)
T ss_dssp CCHHHHHHHGGGCCSCEEEESCCCSHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHH
Confidence 47899999999999999888877777777554
No 39
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=44.43 E-value=18 Score=41.81 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=52.8
Q ss_pred eEEEEEeeCCHH----HHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHH
Q psy7088 74 LWLQMYIFKDRA----LSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDV 149 (873)
Q Consensus 74 ~WFQLY~~~Dr~----~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL 149 (873)
.||+++...=++ ...+++++++++|+..|++| | |.++ ... ...+|+-+
T Consensus 437 ~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t-~------~~~d--------------------G~~-~G~d~~li 488 (555)
T 1jvn_A 437 CWYQCTIKGGRESRDLGVWELTRACEALGAGEILLN-C------IDKD--------------------GSN-SGYDLELI 488 (555)
T ss_dssp EEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEEC-C------GGGT--------------------TTC-SCCCHHHH
T ss_pred eeEEEEEecCccCCCCCHHHHHHHHHHcCCCEEEEe-C------CCCC--------------------CCC-CCCCHHHH
Confidence 588998754222 24578999999999999875 1 1111 001 12479999
Q ss_pred HHHHHhcCCccchhhhhhhhhhhhhh
Q psy7088 150 RSLVQATKLPIVCKDSLQQCCDLSQL 175 (873)
Q Consensus 150 ~wLR~~t~lPl~lkgtl~~~~dls~L 175 (873)
+.+++..+.|++.+|=+....|+..+
T Consensus 489 ~~l~~~~~iPVIasGGi~s~~d~~~~ 514 (555)
T 1jvn_A 489 EHVKDAVKIPVIASSGAGVPEHFEEA 514 (555)
T ss_dssp HHHHHHCSSCEEECSCCCSHHHHHHH
T ss_pred HHHHHhCCccEEEECCCCCHHHHHHH
Confidence 99999999999999988888887554
No 40
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=38.72 E-value=11 Score=48.70 Aligned_cols=54 Identities=11% Similarity=-0.101 Sum_probs=41.8
Q ss_pred CCCCCcceEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHH
Q psy7088 5 CDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEV 65 (873)
Q Consensus 5 s~~DtsTtIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeI 65 (873)
+++|+++ ++..||++||+++..+ .++...++|+||.++|+.+.++..+ .+.|+.
T Consensus 841 ~ev~~~~-----~I~~Pf~isaMS~Gal-S~ea~~aLA~Aa~~aGg~~~tGeGg-~~pe~~ 894 (1479)
T 1ea0_A 841 DEVESIT-----AIRKRFITPGMSMGAL-SPEAHGTLNVAMNRIGAKSDSGEGG-EDPARF 894 (1479)
T ss_dssp GGSCCHH-----HHHTTEEEEECCBTTB-CHHHHHHHHHHHHHTTCEEECCTTC-CCGGGS
T ss_pred ccccccc-----cccCCeEecCcccccc-CHHHHHHHHHHHHHcCCeeEcCCCc-cCHHHh
Confidence 3455555 6799999999997655 6788899999999999988887543 455554
No 41
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=35.28 E-value=43 Score=33.80 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHhcCCccchhhhhhhhhhhhhh
Q psy7088 144 VDWDDVRSLVQATKLPIVCKDSLQQCCDLSQL 175 (873)
Q Consensus 144 ltWeDL~wLR~~t~lPl~lkgtl~~~~dls~L 175 (873)
.+|+-++++++..+.|++..|=++...|+..+
T Consensus 183 ~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~ 214 (252)
T 1ka9_F 183 YDLRLTRMVAEAVGVPVIASGGAGRMEHFLEA 214 (252)
T ss_dssp CCHHHHHHHHHHCSSCEEEESCCCSHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHH
Confidence 46899999999888999888877766666554
No 42
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=32.89 E-value=25 Score=39.36 Aligned_cols=55 Identities=11% Similarity=0.057 Sum_probs=42.3
Q ss_pred CCCCCcceEcC-cccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHh
Q psy7088 5 CDRDSGLTVLG-TRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRA 67 (873)
Q Consensus 5 s~~DtsTtIfG-~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaa 67 (873)
+++|++|.+-+ ..+..||+-||++. . .+..+|-|.+++|-.-+++. ..++|++++
T Consensus 27 ~~v~l~t~lt~~l~l~~PIi~a~M~~--V----s~~~lA~Ava~aGGlGvi~~--~~~~e~~~~ 82 (400)
T 3ffs_A 27 REVSLETKLTKNVSLKIPLISSAMDT--V----TEHLMAVGMARLGGIGIIHK--NMDMESQVN 82 (400)
T ss_dssp GGCCCCEESSSSCEESSSEEECSCTT--T----CSSHHHHHHHTTTCEEEECS--SSCHHHHHH
T ss_pred HHccCccchhcccCCCCCEEeCCCCC--c----CcHHHHHHHHHCCCEEEeCC--CCCHHHHHH
Confidence 56899998864 57899999999883 3 45577888888888888874 667887754
No 43
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=30.53 E-value=61 Score=34.68 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCceecCCCCCCCHHHHHhcC-CCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEe
Q psy7088 39 VATARAAGMMDAIMILSLMSTTSLEEVRAQN-PSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 105 (873)
Q Consensus 39 ~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~-p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvT 105 (873)
...++.|.++|+..+....+ .+.+-+.+.. .+.+.+..+ . +.+.+++++++|+.+|+++
T Consensus 78 ~~~~~~a~~~g~d~V~~~~g-~p~~~i~~l~~~g~~v~~~v---~----~~~~a~~~~~~GaD~i~v~ 137 (332)
T 2z6i_A 78 EDIVDLVIEEGVKVVTTGAG-NPSKYMERFHEAGIIVIPVV---P----SVALAKRMEKIGADAVIAE 137 (332)
T ss_dssp HHHHHHHHHTTCSEEEECSS-CGGGTHHHHHHTTCEEEEEE---S----SHHHHHHHHHTTCSCEEEE
T ss_pred HHHHHHHHHCCCCEEEECCC-ChHHHHHHHHHcCCeEEEEe---C----CHHHHHHHHHcCCCEEEEE
Confidence 45677777888888775554 3333332211 123444443 2 2345678889999998884
No 44
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=29.44 E-value=65 Score=43.18 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=57.6
Q ss_pred eEcCcccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHHHh-------cC-CCCceEEEEEeeCC
Q psy7088 12 TVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRA-------QN-PSTTLWLQMYIFKD 83 (873)
Q Consensus 12 tIfG~~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeIaa-------a~-p~g~~WFQLY~~~D 83 (873)
.++| ..||+.||++..- .+..+|.|++++|-.-+++..+..+.|++.+ .. ++.+.-+-+.....
T Consensus 578 ~~lg---~~PIi~a~M~~~v-----s~~~LaaAva~aGglG~i~g~g~~~~e~l~~~i~~vk~~~~~~~p~gvN~~~~~p 649 (2060)
T 2uva_G 578 RLLG---VPPVMVAGMTPTT-----VPWDFVAATMNAGYHIELAGGGYYNAQKMSDAISKIEKAIPPGRGITVNLIYVNP 649 (2060)
T ss_dssp HHHT---SCSEEECCCTTTT-----CSHHHHHHHHHTTCEECEEGGGCCSHHHHHHHHHHHGGGSCTTCCEEEEEETTCT
T ss_pred hccc---cceEEecCCCCcc-----ccHHHHHHHHHCCCEEEECcCCCCCHHHHHHHHHHHHhhcccCCCeEecccccCc
Confidence 3567 5899999987321 2556899999999999996666667777642 22 23443344433222
Q ss_pred H--HHHHHHHHHHHHcCCcE--EEEeec
Q psy7088 84 R--ALSLQMVQRAERSGYSA--IVITMD 107 (873)
Q Consensus 84 r--~~~~~LL~RAe~AG~kA--LvvTVD 107 (873)
+ +...++++.+.+.|++. +.++.-
T Consensus 650 ~~~~~~~~~~~~~~~~gv~i~gv~~~~G 677 (2060)
T 2uva_G 650 RAMGWQIPLLGRLRADGVPIEGLTIGAG 677 (2060)
T ss_dssp THHHHHHHHHHHHHTTTCCEEEEEEESS
T ss_pred ccchhHHHHHHHHHHcCCCcceEeecCC
Confidence 2 23568899999999998 544443
No 45
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=29.19 E-value=47 Score=37.16 Aligned_cols=91 Identities=21% Similarity=0.282 Sum_probs=60.5
Q ss_pred eEEEEEee----------CCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCC
Q psy7088 74 LWLQMYIF----------KDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDS 143 (873)
Q Consensus 74 ~WFQLY~~----------~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~s 143 (873)
-++|+|+. +|=.-+.+.|.--++.|+.||-++ |+.-....+-.+.. ..+ ..++|.
T Consensus 11 viYei~~~~F~d~~~dg~Gdl~Gi~~kLdYLk~LGvt~I~L~---Pi~~~~~~~~GYd~----------~dy--~~vdp~ 75 (549)
T 4aie_A 11 VVYQVYPKSFQDSNGDGIGDLQGIISRLDYLEKLGIDAIWLS---PVYQSPGVDNGYDI----------SDY--EAIDPQ 75 (549)
T ss_dssp CEEEECGGGTCCSSSSSSCCHHHHHTTHHHHHHHTCSEEEEC---CCEECCCTTTTSSC----------SEE--EEECTT
T ss_pred eEEEEEcchhcCCCCCCCcCHHHHHHhhHHHHHCCCCEEEeC---CCcCCCCCCCCcCc----------cCC--CCcCcc
Confidence 57888874 343445556788899999999995 66532211111110 000 123444
Q ss_pred C-CHHHHHHHHHh---cCCccchhhhhhhhhhhhhhhHHHH
Q psy7088 144 V-DWDDVRSLVQA---TKLPIVCKDSLQQCCDLSQLWYREF 180 (873)
Q Consensus 144 l-tWeDL~wLR~~---t~lPl~lkgtl~~~~dls~LwfrEf 180 (873)
+ ||+|++.|.+. -++.+++..|.+.+++-+. ||+|.
T Consensus 76 ~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NHts~~~~-wf~~~ 115 (549)
T 4aie_A 76 YGTMADMDELISKAKEHHIKIVMDLVVNHTSDQHK-WFVEA 115 (549)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTTSH-HHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEECccCCcCCcc-hhhhh
Confidence 4 89999999875 4789999999999999764 88775
No 46
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=26.22 E-value=69 Score=34.30 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=29.8
Q ss_pred HHHHHHHhhcCCceecCCCCCCCHHHHHhcC-CCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEe
Q psy7088 39 VATARAAGMMDAIMILSLMSTTSLEEVRAQN-PSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 105 (873)
Q Consensus 39 ~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~-p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvT 105 (873)
...++.+.+.|+..+..... .+.+.+.... .+.+.|-.+ .+ .+.+++|+++|+++|+++
T Consensus 92 ~~~~~~~~~~g~d~V~l~~g-~p~~~~~~l~~~g~~v~~~v---~s----~~~a~~a~~~GaD~i~v~ 151 (326)
T 3bo9_A 92 DDLVKVCIEEKVPVVTFGAG-NPTKYIRELKENGTKVIPVV---AS----DSLARMVERAGADAVIAE 151 (326)
T ss_dssp HHHHHHHHHTTCSEEEEESS-CCHHHHHHHHHTTCEEEEEE---SS----HHHHHHHHHTTCSCEEEE
T ss_pred HHHHHHHHHCCCCEEEECCC-CcHHHHHHHHHcCCcEEEEc---CC----HHHHHHHHHcCCCEEEEE
Confidence 44556666677776665443 3333332211 112222211 22 234567888999887774
No 47
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=25.70 E-value=1.9e+02 Score=31.48 Aligned_cols=107 Identities=15% Similarity=0.082 Sum_probs=0.0
Q ss_pred CcceEcCcccCCcceechhhhhhcCCChh---HHHHHHHHhhcCCceecCCCCCCC--------------------HHHH
Q psy7088 9 SGLTVLGTRYRCPVGIAPSAMQKLAHADG---EVATARAAGMMDAIMILSLMSTTS--------------------LEEV 65 (873)
Q Consensus 9 tsTtIfG~~ls~PI~IAPtG~~~L~hpdG---E~a~ARAAa~aGip~~LSt~Ss~S--------------------lEeI 65 (873)
...+|=+.++.-.|++||++...-..++| |.....=+.++|+..+++-....+ +..+
T Consensus 7 ~P~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rAg~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l 86 (364)
T 1vyr_A 7 TPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKI 86 (364)
T ss_dssp SCEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHHTTTSSEEEEEEEESSSTTCCSTTCCBSSSHHHHHHHHHH
T ss_pred CCeeECCEEECCccEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEEccccccccccCCCCCcccCCHHHHHHHHHH
Q ss_pred HhcC--CCCceEEEEE-----------------------------------------eeCCH------------HHHHHH
Q psy7088 66 RAQN--PSTTLWLQMY-----------------------------------------IFKDR------------ALSLQM 90 (873)
Q Consensus 66 aaa~--p~g~~WFQLY-----------------------------------------~~~Dr------------~~~~~L 90 (873)
+++. .++..+.||. ...+. +...+-
T Consensus 87 ~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~g~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~a 166 (364)
T 1vyr_A 87 TAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQA 166 (364)
T ss_dssp HHHHHHTTCCEEEEEECCTTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEeccCCcccCcccccCCCccccCCCcccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHH
Q ss_pred HHHHHHcCCcEEEEeecc---------CccCccc
Q psy7088 91 VQRAERSGYSAIVITMDT---------AVLGSRY 115 (873)
Q Consensus 91 L~RAe~AG~kALvvTVDt---------Pv~G~RE 115 (873)
.+||+++||.+|=|-.-. |..-+|.
T Consensus 167 A~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~ 200 (364)
T 1vyr_A 167 VANAREAGFDLVELHSAHGYLLHQFLSPSSNQRT 200 (364)
T ss_dssp HHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCC
T ss_pred HHHHHHcCCCEEEEcCccchHHHhccCCcccccC
No 48
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=25.01 E-value=50 Score=33.81 Aligned_cols=39 Identities=10% Similarity=-0.012 Sum_probs=27.4
Q ss_pred hhHHHHHHHHhhcCC--ceecCCCCCCCHHHHHhcCCCCce
Q psy7088 36 DGEVATARAAGMMDA--IMILSLMSTTSLEEVRAQNPSTTL 74 (873)
Q Consensus 36 dGE~a~ARAAa~aGi--p~~LSt~Ss~SlEeIaaa~p~g~~ 74 (873)
+-+..+++.-.+.|. ..++|++...+++.+.+..|.-+.
T Consensus 117 ~~~~~v~~~l~~~~~~~~v~~~SF~~~~l~~~~~~~p~~~~ 157 (250)
T 3ks6_A 117 GFVALVIAGLERHSMLERTTFSSFLLASMDELWKATTRPRL 157 (250)
T ss_dssp THHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHCCCCcE
Confidence 345566666666664 567888888889999887775443
No 49
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=24.04 E-value=1.7e+02 Score=31.70 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHhc-CCccchh
Q psy7088 85 ALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQAT-KLPIVCK 163 (873)
Q Consensus 85 ~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t-~lPl~lk 163 (873)
+.+.+++++++++|+.+|.|+-=+...| +. + .. ....+..+|+-++.+++.+ ++|++..
T Consensus 144 ~~~~~~a~~l~~aG~d~I~V~~r~~~~g-------~~---------g--~~--~~~~~~~~~~~i~~ik~~~~~iPVian 203 (350)
T 3b0p_A 144 RGLAQSVEAMAEAGVKVFVVHARSALLA-------LS---------T--KA--NREIPPLRHDWVHRLKGDFPQLTFVTN 203 (350)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCBC------------------------------CCCCCHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCchhcc-------cC---------c--cc--ccCCCcccHHHHHHHHHhCCCCeEEEE
Confidence 3567888999999999987742111000 00 0 00 0012357899999999999 8999999
Q ss_pred hhhhhhhhhhh
Q psy7088 164 DSLQQCCDLSQ 174 (873)
Q Consensus 164 gtl~~~~dls~ 174 (873)
|=+....|.-.
T Consensus 204 GgI~s~eda~~ 214 (350)
T 3b0p_A 204 GGIRSLEEALF 214 (350)
T ss_dssp SSCCSHHHHHH
T ss_pred CCcCCHHHHHH
Confidence 98877666633
No 50
>1dlc_A Delta-endotoxin CRYIIIA; 2.50A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=23.87 E-value=1.4e+02 Score=34.85 Aligned_cols=80 Identities=11% Similarity=0.163 Sum_probs=58.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccccCCCCCCCCChhHHHHHHHhccccccCc------
Q psy7088 518 FRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYYHAQLNDIVQYP------ 591 (873)
Q Consensus 518 ~~a~~rLlg~~~i~~~i~ell~~~~~~i~~~~~~yv~~l~~~mPk~~kLP~~dyGs~G~l~yy~~~L~~~~~Y~------ 591 (873)
+..|+.+|.+.+ -+.+++++.++.+|...|..++.+...+.=. |....+..|+..++...+-|
T Consensus 32 ~s~i~~~lwP~~--~~w~~~~~~ve~LIdqkI~~~~~~~a~~~l~---------gL~~~~~~Y~~al~~w~~np~~~~~~ 100 (584)
T 1dlc_A 32 YTNFLNTIWPSE--DPWKAFMEQVEALMDQKIADYAKNKALAELQ---------GLQNNVEDYVSALSSWQKNPVSSRNP 100 (584)
T ss_dssp HHHHHHHTSSSH--HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHSCTTSCCH
T ss_pred HHHHHHHHcCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhCCccCCCh
Confidence 456678888876 7889999999999999999997766543222 34477788888888776544
Q ss_pred hhhHHHHHHHHhhhhHH
Q psy7088 592 DAKTELFHNFRELGNTI 608 (873)
Q Consensus 592 dLk~evfq~fREiGN~i 608 (873)
.+|.+|-..|.-+-+.+
T Consensus 101 ~~~~~vr~~f~~l~~~~ 117 (584)
T 1dlc_A 101 HSQGRIRELFSQAESHF 117 (584)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44667777776666543
No 51
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=23.86 E-value=1.4e+02 Score=32.23 Aligned_cols=106 Identities=11% Similarity=0.071 Sum_probs=52.3
Q ss_pred HHHHHHhhcCCceecCCCCCCCHHHHHhcC-CCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccc
Q psy7088 40 ATARAAGMMDAIMILSLMSTTSLEEVRAQN-PSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHIS 118 (873)
Q Consensus 40 a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~-p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~ 118 (873)
..++.+.+.|+..+.......+.+.+.+.. .+.+.|..+ .+ .+.+++|+++|+.+|++ +.+..|.-..
T Consensus 113 ~~~~~~~~~g~~~V~~~~g~~~~~~i~~~~~~g~~v~~~v---~t----~~~a~~a~~~GaD~i~v--~g~~~GGh~g-- 181 (369)
T 3bw2_A 113 AKLAVLLDDPVPVVSFHFGVPDREVIARLRRAGTLTLVTA---TT----PEEARAVEAAGADAVIA--QGVEAGGHQG-- 181 (369)
T ss_dssp HHHHHHHHSCCSEEEEESSCCCHHHHHHHHHTTCEEEEEE---SS----HHHHHHHHHTTCSEEEE--ECTTCSEECC--
T ss_pred HHHHHHHhcCCCEEEEeCCCCcHHHHHHHHHCCCeEEEEC---CC----HHHHHHHHHcCCCEEEE--eCCCcCCcCC--
Confidence 345556666766665555544444443221 122333332 22 22356777888887765 4444331100
Q ss_pred cccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcCCccchhhhhhh
Q psy7088 119 KFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDSLQQ 168 (873)
Q Consensus 119 ~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~lPl~lkgtl~~ 168 (873)
.+. ........+.-+|+-++++++..+.|++..|=+..
T Consensus 182 ~~~------------~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~ 219 (369)
T 3bw2_A 182 THR------------DSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMR 219 (369)
T ss_dssp CSS------------CCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCS
T ss_pred Ccc------------cccccccccccHHHHHHHHHHhcCceEEEECCCCC
Confidence 000 00000000012488899999888899988776643
No 52
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=23.69 E-value=1.7e+02 Score=31.30 Aligned_cols=107 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred CcceEcCcccCCcceechhhhhhcCCChh---HHHHHHHHhhc--CCceecCCCCCCC--------------------HH
Q psy7088 9 SGLTVLGTRYRCPVGIAPSAMQKLAHADG---EVATARAAGMM--DAIMILSLMSTTS--------------------LE 63 (873)
Q Consensus 9 tsTtIfG~~ls~PI~IAPtG~~~L~hpdG---E~a~ARAAa~a--Gip~~LSt~Ss~S--------------------lE 63 (873)
+..+|=|.++.-+|++||++...--.++| |..+..=+.++ |...+++-....+ +.
T Consensus 7 ~p~~ig~~~l~NRiv~aPm~~~~~~~~~g~~~~~~~~~y~~rA~gG~gliite~~~v~~~g~~~~~~~~i~~d~~~~~~~ 86 (338)
T 1z41_A 7 TPITIKDMTLKNRIVMSPMCMYSSHEKDGKLTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFA 86 (338)
T ss_dssp SCEEETTEEESSSEEECCCCCCCCTTSSSCCCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHH
T ss_pred CCeeECCEEEcCccEECCcCCCcCCCCCCCCCHHHHHHHHHHHcCCCCEEEeCCeeccccccCCCCCcccCCHHHHHHHH
Q ss_pred HHHhcC--CCCceEEEEEee----------------------CCH------------HHHHHHHHHHHHcCCcEEEEeec
Q psy7088 64 EVRAQN--PSTTLWLQMYIF----------------------KDR------------ALSLQMVQRAERSGYSAIVITMD 107 (873)
Q Consensus 64 eIaaa~--p~g~~WFQLY~~----------------------~Dr------------~~~~~LL~RAe~AG~kALvvTVD 107 (873)
.++++. .++..+.||.-. .+. +.-.+-.++|++|||++|=+-.-
T Consensus 87 ~~~~~vh~~g~~i~~QL~h~Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~aGfDgVeih~~ 166 (338)
T 1z41_A 87 KLTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAA 166 (338)
T ss_dssp HHHHHHHHTTCEEEEEEECCGGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred HHHHHHHhcCCEEEEEecCCCcccCCCCCCcCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccc
Q ss_pred c---------CccCccc
Q psy7088 108 T---------AVLGSRY 115 (873)
Q Consensus 108 t---------Pv~G~RE 115 (873)
. |...+|.
T Consensus 167 ~gyLl~qFlsp~~n~R~ 183 (338)
T 1z41_A 167 HGYLIHEFLSPLSNHRT 183 (338)
T ss_dssp TTSHHHHHHCTTTCCCC
T ss_pred cchHHHHccCCCcCCcC
No 53
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=23.16 E-value=25 Score=45.46 Aligned_cols=47 Identities=9% Similarity=-0.093 Sum_probs=37.3
Q ss_pred ccCCcceechhhhhhcCCChhHHHHHHHHhhcCCceecCCCCCCCHHHH
Q psy7088 17 RYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEEV 65 (873)
Q Consensus 17 ~ls~PI~IAPtG~~~L~hpdGE~a~ARAAa~aGip~~LSt~Ss~SlEeI 65 (873)
.+..||+++|+++..+ -++.-.++|+||.++|+.+.++..+. +.|..
T Consensus 865 ~I~~Pfii~aMS~Gsl-S~ea~~aLA~Aas~aGg~~~tGeGg~-~pe~~ 911 (1520)
T 1ofd_A 865 SIVKRFCTGGMSLGAL-SREAHETLAIAMNRLGAKSNSGEGGE-DVVRY 911 (1520)
T ss_dssp HHHTTEECCCBCTTTS-CHHHHHHHHHHHHHHTCBCEECTTCC-CGGGG
T ss_pred cccCceEecCcCcccc-cHHHHHHHHHHHHHcCCceEeCCCCC-CHHHH
Confidence 6789999999997654 46788899999999999998876543 44443
No 54
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=22.41 E-value=64 Score=33.86 Aligned_cols=54 Identities=7% Similarity=0.009 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHHHHHHHhcC-Ccc
Q psy7088 82 KDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATK-LPI 160 (873)
Q Consensus 82 ~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL~wLR~~t~-lPl 160 (873)
.|.+...++++++.++|+..|.+- |+.+.+ .|....+-++++++.++ .||
T Consensus 152 ~~~~~~~~~~~~~~~~G~d~i~l~-Dt~G~~----------------------------~P~~~~~lv~~l~~~~~~~~l 202 (295)
T 1ydn_A 152 VTPQAVASVTEQLFSLGCHEVSLG-DTIGRG----------------------------TPDTVAAMLDAVLAIAPAHSL 202 (295)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEE-ETTSCC----------------------------CHHHHHHHHHHHHTTSCGGGE
T ss_pred CCHHHHHHHHHHHHhcCCCEEEec-CCCCCc----------------------------CHHHHHHHHHHHHHhCCCCeE
Confidence 588999999999999999998887 754332 11122345778888776 677
Q ss_pred chhh
Q psy7088 161 VCKD 164 (873)
Q Consensus 161 ~lkg 164 (873)
.+-+
T Consensus 203 ~~H~ 206 (295)
T 1ydn_A 203 AGHY 206 (295)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6655
No 55
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=21.80 E-value=1.6e+02 Score=32.16 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=32.1
Q ss_pred cceEcCcccCCcceechhhhhhcCCChh---HHHHHHHHhhcCCceecC
Q psy7088 10 GLTVLGTRYRCPVGIAPSAMQKLAHADG---EVATARAAGMMDAIMILS 55 (873)
Q Consensus 10 sTtIfG~~ls~PI~IAPtG~~~L~hpdG---E~a~ARAAa~aGip~~LS 55 (873)
..+|=|.++.-.|++||++...-..++| |.....=++++|+..+++
T Consensus 8 P~~ig~~~l~NRiv~aPm~~~~a~~~~g~~t~~~~~~y~~rA~~GLiit 56 (365)
T 2gou_A 8 PITLGALTLKNRIVMPPMTRSRASQPGDVANHMMAIYYAQRASAGLIVS 56 (365)
T ss_dssp CEEETTEEESSSEEECCCCCCCCBTTTTBCCHHHHHHHHTTTTSSEEEE
T ss_pred CeeECCEEEcCceEECCCCCCcccCCCCCCCHHHHHHHHHHhcCCEEEE
Confidence 4677778899999999999765322554 666666666666666654
No 56
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=20.69 E-value=1.7e+02 Score=29.63 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=45.9
Q ss_pred ceEEEEEe---eCCHHHHHHHHHHHHHcCCcEEEEeeccCccCcccccccccccccccccCcchhhhhhccCCCCCHHHH
Q psy7088 73 TLWLQMYI---FKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDV 149 (873)
Q Consensus 73 ~~WFQLY~---~~Dr~~~~~LL~RAe~AG~kALvvTVDtPv~G~RErd~~f~~~~~~~~~~~~~~~v~~~~d~sltWeDL 149 (873)
+.+..+.. ..+.+...++.+.|+++|+.+| .| .+ |. . .+..+|+++
T Consensus 117 pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I-~t-st---g~-------~-------------------~gga~~~~i 165 (225)
T 1mzh_A 117 SAVHKVIVETPYLNEEEIKKAVEICIEAGADFI-KT-ST---GF-------A-------------------PRGTTLEEV 165 (225)
T ss_dssp TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEE-EC-CC---SC-------S-------------------SSCCCHHHH
T ss_pred CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEE-EE-CC---CC-------C-------------------CCCCCHHHH
Confidence 45666632 2456678888999999999887 11 11 20 0 123689999
Q ss_pred HHHHHhc--CCccchhhhhhhhhhh
Q psy7088 150 RSLVQAT--KLPIVCKDSLQQCCDL 172 (873)
Q Consensus 150 ~wLR~~t--~lPl~lkgtl~~~~dl 172 (873)
+.+++.. +.|+...|=++..-|.
T Consensus 166 ~~v~~~v~~~ipVia~GGI~t~~da 190 (225)
T 1mzh_A 166 RLIKSSAKGRIKVKASGGIRDLETA 190 (225)
T ss_dssp HHHHHHHTTSSEEEEESSCCSHHHH
T ss_pred HHHHHHhCCCCcEEEECCCCCHHHH
Confidence 9999987 5788888866654443
No 57
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=20.65 E-value=1e+02 Score=32.61 Aligned_cols=58 Identities=14% Similarity=0.052 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCCceecCCCCCCCHHHHHhcC-CCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEE
Q psy7088 39 VATARAAGMMDAIMILSLMSTTSLEEVRAQN-PSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVI 104 (873)
Q Consensus 39 ~a~ARAAa~aGip~~LSt~Ss~SlEeIaaa~-p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvv 104 (873)
...++.+.+.|+..+..... .+.+.+.... .+.+.|.. ..+. +..++++++|+++|++
T Consensus 86 ~~~~~~~~~~g~d~V~~~~g-~p~~~~~~l~~~gi~vi~~---v~t~----~~a~~~~~~GaD~i~v 144 (328)
T 2gjl_A 86 AEYRAAIIEAGIRVVETAGN-DPGEHIAEFRRHGVKVIHK---CTAV----RHALKAERLGVDAVSI 144 (328)
T ss_dssp HHHHHHHHHTTCCEEEEEES-CCHHHHHHHHHTTCEEEEE---ESSH----HHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCC-CcHHHHHHHHHcCCCEEee---CCCH----HHHHHHHHcCCCEEEE
Confidence 45667777778877765544 2333333221 12233322 2222 3356788899999886
No 58
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=20.31 E-value=2.1e+02 Score=23.69 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=31.6
Q ss_pred CCCceEEEEEeeCCHHHHHHHHHHHHHcCCcEEEEe
Q psy7088 70 PSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVIT 105 (873)
Q Consensus 70 p~g~~WFQLY~~~Dr~~~~~LL~RAe~AG~kALvvT 105 (873)
+++..|.|+--+++++..+.+.++.++.|+++.++.
T Consensus 6 ~~~~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i~~ 41 (79)
T 1x60_A 6 SSGLYKVQIGAFKVKANADSLASNAEAKGFDSIVLL 41 (79)
T ss_dssp CCCEEEEEEEEESCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCEEEEEEEcCCHHHHHHHHHHHHhCCCCeEEec
Confidence 456799999999999999999999999999987753
Done!