RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7088
(873 letters)
>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein
binding; 2.29A {Homo sapiens}
Length = 1253
Score = 932 bits (2410), Expect = 0.0
Identities = 448/692 (64%), Positives = 537/692 (77%), Gaps = 50/692 (7%)
Query: 164 DSLQQCCDLSQLWYREFYLEMTMGRRIQKCVVRHQHNEECSDLITMEKRIQFPIEMSMPW 223
++LQQCCDLSQLW+REF+LE+TMGRRIQ FPIEMSMPW
Sbjct: 610 ETLQQCCDLSQLWFREFFLELTMGRRIQ-----------------------FPIEMSMPW 646
Query: 224 ILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKL 283
ILTDHIL+TKE SMMEYVLY LDLYNDSAHYALT F KQFLYDE+EAEVNLCFDQFVYKL
Sbjct: 647 ILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQFVYKL 706
Query: 284 SEQIFAHYKQLAASMLLDKRFRVECMAMGTYLLAYPRANRYETLLRQRHVQLLGRSIDLN 343
++QIFA+YK +A S+LLDKR R EC G + P +NRYETLL+QRHVQLLGRSIDLN
Sbjct: 707 ADQIFAYYKVMAGSLLLDKRLRSECKNQGATIH-LPPSNRYETLLKQRHVQLLGRSIDLN 765
Query: 344 KLITQRINADMHKSLDLAISKFEHGDITGVVELEGLLAVNRLCHKLLSKLLGLDDYDAML 403
+LITQR++A M+KSL+LAI +FE D+T +VEL+GLL +NR+ HKLLS+ L LD +DAM
Sbjct: 766 RLITQRVSAAMYKSLELAIGRFESEDLTSIVELDGLLEINRMTHKLLSRYLTLDGFDAMF 825
Query: 404 HEANHNVLAPYGRITLHIFWELNYDFLPNYCYNGATNRITLHIFWELNYDFLPNYCYNGA 463
EANHNV APYGRITLH+FWELNYDFLPNYCYNG+TNR
Sbjct: 826 REANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNR---------------------- 863
Query: 464 TNRFIKCRGIMFTQQIHREKLPPMTHTYSWGSKQLNMAYYSIYGQYTGFVGAYHFRAMCR 523
F++ + F+Q+ R+K P Y GSK LN+AY SIYG Y FVG HF+ +CR
Sbjct: 864 ---FVRTV-LPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICR 919
Query: 524 LLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGYYHAQ 583
LLGYQGIAVVMEELLK+V SL+QG++LQ+ KTLM+ MPK C+LPR++YGSPG+L ++H Q
Sbjct: 920 LLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQ 979
Query: 584 LNDIVQYPDAKTELFHNFRELGNTILFCLLMEQALSQEEVCDLLHAAPFQNILPRPYCKE 643
L DIV+Y + KT F N RE+GN ILFCLL+EQ+LS EEVCDLLHAAPFQNILPR + KE
Sbjct: 980 LKDIVEYAELKTVCFQNLREVGNAILFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKE 1039
Query: 644 GEKPETKQKRLEQKYASLQIVSNIDRLGTAKQAMIAREGDLLTRERLCCGLSIFEVVLNR 703
GE+ + K KRLE KYA L +V I+RLGT +Q IAREGDLLT+ERLCCGLS+FEV+L R
Sbjct: 1040 GERLDAKMKRLESKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTR 1099
Query: 704 LRGFLDDPIWVGPPPTNGVINIDECTEFHRLWSALQFVYCIPVGDTEFTVEELFGEGLNW 763
+R FLDDPIW GP P+NGV+++DEC EFHRLWSA+QFVYCIPVG EFTVE+ FG+GL+W
Sbjct: 1100 IRSFLDDPIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHW 1159
Query: 764 AGCTMIVLLGQQRRFEALDFCYHILRVQRVDGRDENVKGIHLKRMVDRIRRFQVVNSQIF 823
AGC +IVLLGQQRRF LDFCYH+L+VQ+ DG+DE +K + LK+MV+RIR+FQ++N +I
Sbjct: 1160 AGCMIIVLLGQQRRFAVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEII 1219
Query: 824 ATLNKYLGSSDADAASVEHVRCFPPPIHPSLA 855
L+KYL S D + VEHVRCF PPIH SLA
Sbjct: 1220 TILDKYLKSGDGEGTPVEHVRCFQPPIHQSLA 1251
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1,
structural genomics, structural genom consortium, SGC,
oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB:
2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Length = 392
Score = 205 bits (525), Expect = 4e-59
Identities = 69/183 (37%), Positives = 100/183 (54%), Gaps = 20/183 (10%)
Query: 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 60
+RNV + D +VLG R P+ + +AMQ++AH DGE+AT RA + M+LS +T+
Sbjct: 76 LRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATS 135
Query: 61 SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRY----- 115
S+EEV P WLQ+YI+KDR ++ ++V++AE+ GY AI +T+DT LG+R
Sbjct: 136 SIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRN 195
Query: 116 ---------------HISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPI 160
F SGL YVA D S+ W+D++ L + T LPI
Sbjct: 196 RFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPI 255
Query: 161 VCK 163
V K
Sbjct: 256 VAK 258
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET:
FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A*
2e77_A* 2j6x_A*
Length = 368
Score = 203 bits (520), Expect = 1e-58
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 11/174 (6%)
Query: 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 60
++V D+ +LG + + P +AP A LAH E TARA IM +S S
Sbjct: 62 AQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGA 121
Query: 61 SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRY----- 115
+ EE+ W Q+Y+ KD + ++ A+ G +AI++T D+ V G+R
Sbjct: 122 TFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKN 181
Query: 116 ------HISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCK 163
+ + + + + D+ + + LP+ K
Sbjct: 182 KFVYPFGMPIVQRYLRGTAEGMSLNNIYGASKQKISPRDIEEIAGHSGLPVFVK 235
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH
oxidoreductase-oxidoreductase inhibitor complex; HET:
FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Length = 352
Score = 201 bits (514), Expect = 5e-58
Identities = 55/173 (31%), Positives = 87/173 (50%), Gaps = 10/173 (5%)
Query: 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 60
+R++ D+ T+ G P+ I+P+A +A DGE +TARAA + ++S ++
Sbjct: 51 LRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASY 110
Query: 61 SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYH--IS 118
SLE++ A P W Q+Y+ D + QMVQRAE G+ A+VIT+DT VLG+R +
Sbjct: 111 SLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRN 170
Query: 119 KFR--------DISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCK 163
+ + A + S W+D+ L T+LPI+ K
Sbjct: 171 QLNLEANILKAALRALKEEKPTQSVPVLFPKASFCWNDLSLLQSITRLPIILK 223
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase
(oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP:
c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Length = 370
Score = 201 bits (513), Expect = 1e-57
Identities = 72/180 (40%), Positives = 102/180 (56%), Gaps = 18/180 (10%)
Query: 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 60
+ +V + D T+LG + P+ IAP+AMQK+AH +GE ATARAA IM LS +T+
Sbjct: 53 LIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATS 112
Query: 61 SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRY--HIS 118
S+EEV + P + Q+Y++KDR + Q+V+RAER+G+ AI +T+DT LG R +
Sbjct: 113 SVEEVASTGPG-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKN 171
Query: 119 KFR---------------DISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCK 163
+F + SGL+ YVA Q D S+ W DV L T LPI+ K
Sbjct: 172 RFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVK 231
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing
enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas
putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A*
2a7p_A* 2a85_A* 2a7n_A*
Length = 380
Score = 187 bits (478), Expect = 8e-53
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 19/180 (10%)
Query: 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 60
+ +V R VLG R P+ I P+ + G++A ARAA +LS S
Sbjct: 54 LVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNM 113
Query: 61 SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYH---- 116
S+E++ A+ LW Q+Y+ R ++ MV +A +GY+ +V+T D AV G R
Sbjct: 114 SIEDL-ARQCDGDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHN 171
Query: 117 ---------ISKFRDISA----EECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCK 163
+ F I + ++ Q D S +W+ +R L ++ K
Sbjct: 172 RFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVK 231
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 188 bits (479), Expect = 1e-51
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 16/179 (8%)
Query: 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHA---DGEVATARAAGMMDAIMILSLM 57
+ +V D +LG+ P ++ +A+ KL + + +VA G+ ++S +
Sbjct: 171 LVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTL 230
Query: 58 STTSLEEVR--AQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRY 115
++ S EE+ A + W Q+Y+ DR ++ +V+ E+ G A+ +T+D LG R
Sbjct: 231 ASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQRE 290
Query: 116 H-----------ISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCK 163
K + E S G + ++ D S+ W D+ L + TKLPIV K
Sbjct: 291 KDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIK 349
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate
isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Length = 365
Score = 79.5 bits (196), Expect = 7e-16
Identities = 16/165 (9%), Positives = 46/165 (27%), Gaps = 22/165 (13%)
Query: 2 RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTS 61
++ + D G + P I + A+ A + + S
Sbjct: 69 YDLAEIDLSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYS--- 125
Query: 62 LEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISKFR 121
K+ + V+++ A I +D + +
Sbjct: 126 -----------------TALKNPDDTSYQVKKSRPHLLLATNIGLDKPYQAGLQAVRDLQ 168
Query: 122 DISAEECSSGLTDYVANQFD-DSVDW-DDVRSLVQATKLPIVCKD 164
+ + + + + + + + + W + + +LP + K+
Sbjct: 169 PLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKE 213
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 77.2 bits (189), Expect = 2e-14
Identities = 96/596 (16%), Positives = 172/596 (28%), Gaps = 188/596 (31%)
Query: 106 MDTAVLGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDS 165
MD +Y ++DI L+ + F D+ D DV+ + ++
Sbjct: 7 MDFETGEHQYQ---YKDI--------LSVFEDA-FVDNFDCKDVQDMPKSILSKEEIDHI 54
Query: 166 LQQCCDLSQLWYREFYLEMTMGRRIQKCVVRHQHNEECSDLITMEKRIQFPIEMSMPWIL 225
+ +S R+ ++ Q ++K ++ + ++ +++
Sbjct: 55 IMSKDAVSGT------------LRLFWTLLSKQEE-------MVQKFVEEVLRINYKFLM 95
Query: 226 TDHILKTKEPSMM--EYVLYPLDLYNDSAHYA-LTVFRKQFLYDEVEAEVNLCFDQFVYK 282
+ + ++PSMM Y+ LYND+ +A V R Q Y ++ Q + +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLR--------QALLE 146
Query: 283 LSEQ--IFAHY-----KQ-LAASMLLDKRFRVECMAMGTYLLAYPRANRYETLLRQRHVQ 334
L + K +A + L + M + L N ET+L +Q
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEM--LQ 203
Query: 335 LLGRSID-----------------------LNKLITQR-----------------INA-D 353
L ID L +L+ + NA +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 354 MH-KSL----DLAISKFEHGDITGVVELE----GLLAVNRLCHKLLSKLLGLDDYDAML- 403
+ K L ++ F T + L+ L LL K L D L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLLLKYLDCRPQD--LP 319
Query: 404 HEA-NHNVLAPYGRITLHIFWELNYDFLP---NYCYNGATNRITLHIFWELNYDFL-PNY 458
E N L I E D L N+ + N L E + + L P
Sbjct: 320 REVLTTNPRR------LSIIAESIRDGLATWDNWKH---VNCDKLTTIIESSLNVLEPAE 370
Query: 459 CYNGATNRFIKCRGIMFTQQIHREKLPPMT--------------------HTYSWGSKQL 498
F + +F +P + H YS KQ
Sbjct: 371 YRK----MFDRL--SVFPPSA---HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 499 NMAYYSIYGQYTGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMD 558
+ SI Y +E +K+ + ++++D
Sbjct: 422 KESTISIPSIY------------------------LELKVKLE------NEYALHRSIVD 451
Query: 559 AMPKQCKLPRYDYGSPGVLGY------YHAQLNDIVQYPDAKTELFHNFRELGNTI 608
D P + Y +H + + + +F +FR L I
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Score = 38.3 bits (88), Expect = 0.012
Identities = 50/341 (14%), Positives = 100/341 (29%), Gaps = 97/341 (28%)
Query: 577 LGYYHAQLNDIVQY--PDAKTELFHNFRELGNTILFCLLMEQALSQEEVCDLLHAAPFQN 634
G + Q DI+ + +++ + + + LS+EE+ ++ + +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNF--DCKDVQD------MPKSILSKEEIDHIIMSKDAVS 62
Query: 635 ILPRPYCKEGEKPETKQKRLEQKYASLQIVSNIDRLGTAKQAMIAREGDLLTRERLCCGL 694
R + +KQ+ + QK+ + N L + + R+ ++TR
Sbjct: 63 GTLRLF----WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-QRQPSMMTRM------ 111
Query: 695 SIFEVVLNRLRGFLDDPIWVGPPPTNGVINIDECTEFHRLWSALQ--------FVY---- 742
+ +RL D+ ++ N ++ + + +L AL +
Sbjct: 112 --YIEQRDRLYN--DNQVF---AKYN--VSRLQ--PYLKLRQALLELRPAKNVLIDGVLG 160
Query: 743 CIPVGDT--------EFTVEELFGEGLNWAGCTMIVLLGQQRRFEAL-----DFCYHILR 789
G T + V+ + W + L E + Y I
Sbjct: 161 S---GKTWVALDVCLSYKVQCKMDFKIFW------LNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 790 --VQRVDGRDENVKGIHLKRMVDRIRRFQ--------------VVNSQIFATLN---KYL 830
R D N+K + + + +RR V N++ + N K L
Sbjct: 212 NWTSRSD-HSSNIK-LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 831 ----GSSDADAASVEHVRCFPPPIHPSLAQQHGHYYRPENM 867
D S H SL E
Sbjct: 270 LTTRFKQVTDFLSAATTT------HISLDHHSMTLTPDEVK 304
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 63.6 bits (155), Expect = 9e-11
Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 33/171 (19%)
Query: 2 RNVCDRDSGLTVLGTRYRCPVGIAPSAMQ-KLAHADGEVATARAAGMMDAIMILSLMST- 59
+ D + P+ I + + ARAA + + +
Sbjct: 38 LALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA 97
Query: 60 -------TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLG 112
S E VR +NP+ ++ + A + + V E G +A+ I ++
Sbjct: 98 LKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAV---EMIGANALQIHLNVIQEI 154
Query: 113 SRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCK 163
G + S + + +P++ K
Sbjct: 155 VM--------------PEGDRSF-------SGALKRIEQICSRVSVPVIVK 184
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 7e-08
Identities = 52/301 (17%), Positives = 88/301 (29%), Gaps = 115/301 (38%)
Query: 395 GLDDYD------AMLHEANHNVLAPYGRITLHIFW----ELNYDFLP--------NY--- 433
G+D Y + + A+++ YG L I L F NY
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 434 CYNGAT--NRITLHIFWELNYDFLPNYCYNG------ATNRFIKCRGIMFTQQIHREKLP 485
+ T IF E+N +Y + AT FTQ
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEH-STSYTFRSEKGLLSATQ---------FTQ-------- 1733
Query: 486 P--MTHTY-------SWGSKQLNMAYY---SIYGQYTGFV---GAYHFRAMCRLLGYQGI 530
P S G + A + S+ G+Y ++ ++ Y+G
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPAD-ATFAGHSL-GEYAALASLADVMSIESLVEVVFYRG- 1790
Query: 531 AVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYG----SPG--VLGYYHAQL 584
T+ A+P+ +L R +YG +PG + L
Sbjct: 1791 -----------------------MTMQVAVPRD-ELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 585 NDIVQYPDAKTELF-----HNFREL-----GNTILFCLLMEQALSQEEVCDLLHAAPFQN 634
+V+ +T +N G+ +AL + V ++L+ Q
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL--------RAL--DTVTNVLNFIKLQK 1876
Query: 635 I 635
I
Sbjct: 1877 I 1877
Score = 54.3 bits (130), Expect = 2e-07
Identities = 113/637 (17%), Positives = 188/637 (29%), Gaps = 247/637 (38%)
Query: 350 INADMHKSLDLAISKFEHGDITGVVELEGLLAVNRLCHKLLSKLLGLDDYDAMLHEANHN 409
++A + L L+ HG + E +L V + S+L + ++ +L E
Sbjct: 1 MDAYSTRPLTLS-----HGSL------EHVLLVPTASFFIASQLQ--EQFNKILPEPTEG 47
Query: 410 VLA---PYGRITLHIFWELNYDFLPNYC-------YNGATNRITLHIFWELNYDFLPNYC 459
A P EL FL Y G +++ E +L
Sbjct: 48 FAADDEPTTPA------ELVGKFL-GYVSSLVEPSKVGQFDQVLNLCLTEFENCYL---- 96
Query: 460 YNGATNRFIKCRGIMFTQQIHR--EKLPPMTHTYSWGSKQLNMAYYSIYGQYTGFVGAYH 517
G IH KL T +K+L Y +
Sbjct: 97 -----------EG----NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 518 ----FRAMCR-------LLGYQG-IAVVMEELLKI-------VTSLIQGS---LLQFTKT 555
FRA+ + G QG EEL + V LI+ S L + +T
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 556 LMDA---MPKQCKL----------PRYDYGS------PG--------------VLGYYHA 582
+DA + + P DY P +LG+
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 583 QLNDIVQ----------------YPDAKTELFHNFRE-LGNTILFCLLMEQALSQEEVCD 625
+L ++ D+ F + R+ + T+LF + + E
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI--TVLFFIGVR---CYE---- 312
Query: 626 LLHAAPFQNILPRP---YCKEGEKPETKQ---KRLEQKYASLQIVSNIDR----LGTAKQ 675
A P ++ P + E + L Q+ Q+ +++ L KQ
Sbjct: 313 ---AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE----QVQDYVNKTNSHLPAGKQ 365
Query: 676 AMIAREGDLLT---RERLCCG--LSIFEVVLNRLRG------------------------ 706
I+ L + + G S++ + L LR
Sbjct: 366 VEIS-----LVNGAKNLVVSGPPQSLYGLNL-TLRKAKAPSGLDQSRIPFSERKLKFSNR 419
Query: 707 FLDDPIWVGPP-------PTNGVINIDECTEFHRLWSA--LQFVYCIPVGDT-------- 749
FL P+ P P + +IN D + + ++A +Q IPV DT
Sbjct: 420 FL--PVAS--PFHSHLLVPASDLINKD-LVKNNVSFNAKDIQ----IPVYDTFDGSDLRV 470
Query: 750 ------EFTVEELFGEGLNWAGCTMIVLLGQQRRFEALDFCYHILRVQRVD-GRDENVKG 802
E V+ + + W T +F+A HIL D G G
Sbjct: 471 LSGSISERIVDCIIRLPVKWETTT---------QFKAT----HIL-----DFGPG-GASG 511
Query: 803 IHLKRMVDRIRR---FQVVNSQIFATLNKYLGSSDAD 836
L + R + +V+ + TL+ + D D
Sbjct: 512 --LGVLTHRNKDGTGVRVI---VAGTLDI---NPDDD 540
Score = 40.8 bits (95), Expect = 0.002
Identities = 87/540 (16%), Positives = 151/540 (27%), Gaps = 206/540 (38%)
Query: 212 RIQFPIEMSMPWILTDHILKTKEPS--------MMEYVLYPLD-----LYNDSAHYALTV 258
+ QF + P T+ EP+ + YV ++ ++ + LT
Sbjct: 34 QEQFNKILPEP---TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 259 FRKQFLYDE----VEAEVNLCFDQFVYKLSEQIFAHYKQLAA----------SMLL---- 300
F +L + A++ D + K E I + S L
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 301 DKRFRVECMAM--G-----TYL--LA--YPRANRYETLLRQRHVQLLGRSID-LNKLITQ 348
+ ++ +A+ G Y L Y Y L+ L+ S + L++LI
Sbjct: 151 EGNAQL--VAIFGGQGNTDDYFEELRDLY---QTYHVLVG----DLIKFSAETLSELIRT 201
Query: 349 RINADMHKSLDLAISKFEHG-DITGVVELEGLL-AVNRLCHKLLS-KLLGLDDYDAMLHE 405
++A+ F G +I +E + L +S L+G+
Sbjct: 202 TLDAEKV---------FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ------- 245
Query: 406 ANHNVLAPYGRITLHIFWELNY---DFLPNYCYNGATNR----ITLHIF-----WELNYD 453
LA Y +T + L + + GAT +T WE
Sbjct: 246 -----LAHY-VVTAKL---LGFTPGELRSYLK--GATGHSQGLVTAVAIAETDSWE---S 291
Query: 454 FLPNYCYNGATNRF-IKCRGIMFTQQIH-REKLPPMTHTYSWGSKQLNMAYYSIYGQYTG 511
F + T F I R + + LPP S + + +
Sbjct: 292 FFVSV-RKAITVLFFIGVRC----YEAYPNTSLPPSILEDSLENNEGVPSP--------- 337
Query: 512 FVGAYHFRAMCRLLGYQGIAVVMEELLKIVT--------------SLIQG---------- 547
M L + E++ V SL+ G
Sbjct: 338 ---------M---LSISNLT--QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 548 -SLLQFTKTL--MDAMPK--QCKLP----------RYD-YGSPGVLGYYHAQL----NDI 587
SL TL A Q ++P R+ SP +H+ L +D+
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP-----FHSHLLVPASDL 438
Query: 588 VQYPDAKTEL-----------FH-----NFRELGNTILFCLLMEQALSQEEVCDLLHAAP 631
+ K + + + R L +I E + D + P
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS-----------ERIVDCIIRLP 487
Score = 34.3 bits (78), Expect = 0.24
Identities = 38/261 (14%), Positives = 68/261 (26%), Gaps = 106/261 (40%)
Query: 10 GLTVLGTRYR--CPV-GIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSLEE-- 64
G+ L Y + G P ++ AT + G++ A+ I S S
Sbjct: 242 GVIQLA-HYVVTAKLLGFTPGELRSYLKG----ATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 65 -----------VRAQN--PSTTLWLQMYIFKD---------------RALSLQMVQ---- 92
VR P+T+L + +D L+ + VQ
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSIL--EDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 93 --RAERSGYSAIVITM----DTAVL-G-----------------------SRYHISK--- 119
+ + I++ V+ G SR S+
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 120 -----FRDISA-------EECSSGL-TDYVANQFD-----------DSVDWDDVRSLVQA 155
F +++ S + D V N D+ D D+R L
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL-SG 473
Query: 156 TKLPIVCKDSLQQCCDLSQLW 176
+ + ++ W
Sbjct: 474 SISERIVDCIIRLPVK----W 490
Score = 33.5 bits (76), Expect = 0.41
Identities = 45/262 (17%), Positives = 79/262 (30%), Gaps = 113/262 (43%)
Query: 671 GTAKQAM---------IARE----GDLLTRERLCCGLSIFEVVLN--------------- 702
G+ +Q M A++ D ++ G SI ++V+N
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTY--GFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 703 RLR----GFLDDPIWVGPPPTNGVIN-IDECTEFHRLWSALQFVYCIPVGD---TEFT-- 752
R+R + + I G T + I+E + ++ F G T+FT
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHS------TSYTFRS--EKGLLSATQFTQP 1734
Query: 753 ---------VEELFGEGLNWAGCTMIVL-LGQQRRFE---------ALDF--CYHILR-- 789
E+L +GL A T LG E + ++
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLG-----EYAALASLADVMSIESLVEVVFYR 1789
Query: 790 ---VQRVDGRDENVKGIH------------------LKRMVDRIRRF-----QVVN---- 819
+Q RDE + + L+ +V+R+ + ++VN
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 820 -SQIFATLNKYLGSSDA-DAAS 839
Q A G A D +
Sbjct: 1850 NQQYVAA-----GDLRALDTVT 1866
Score = 31.9 bits (72), Expect = 1.3
Identities = 27/173 (15%), Positives = 55/173 (31%), Gaps = 52/173 (30%)
Query: 245 LDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAASMLLDKRF 304
+DLY S + +++ A+ + D + + + + + + L
Sbjct: 1633 MDLYKTSK-----AAQD--VWN--RADNHF-KDTYGFSILDIVINNPVNL---------- 1672
Query: 305 RVECMAMGTYLLAYPRANRYETLLRQRHVQLLGRSIDLNKLITQRINADMHKSLDLAISK 364
T + R +R+ + ++ +I KL T++I K ++ +
Sbjct: 1673 --------TIHFGGEKGKR----IRENYSAMIFETIVDGKLKTEKIF----KEINEHSTS 1716
Query: 365 --FEHGDITGVVELE-------GLLAVNRLCHKLLSKLLGLDDYDAMLHEANH 408
F L L + + + L K GL DA A H
Sbjct: 1717 YTFRSEK----GLLSATQFTQPALTLMEKAAFEDL-KSKGLIPADATF--AGH 1762
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl
diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus
shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Length = 368
Score = 47.2 bits (112), Expect = 2e-05
Identities = 16/169 (9%), Positives = 40/169 (23%), Gaps = 28/169 (16%)
Query: 2 RNVCDRDSGLTVLGTRYRCPVGIAP-SAMQKLAHADGEVATARAAGMMDAIMILSLMST- 59
+ + ++ PV + + + + A A M +
Sbjct: 42 ISFSEINTKTKFFRKEISVPVMVTGMTGGRNELGRINK-IIAEVAEKFGIPMGVGSQRVA 100
Query: 60 -------TSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLG 112
S VR P+ + L M Q + G +
Sbjct: 101 IEKAEARESFAIVRKVAPTIPIIAN----------LGMPQLVKGYGLKEFQDAIQMIEAD 150
Query: 113 SRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIV 161
+ ++ + + + +R + + +PI+
Sbjct: 151 AIA-----VHLN---PAQEVFQPEGEPEYQIYALEKLRDISKELSVPII 191
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural
genomics, riken structural genomics/P initiative, RSGI;
HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1
PDB: 1vcg_A* 3dh7_A*
Length = 332
Score = 44.6 bits (105), Expect = 1e-04
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 8/130 (6%)
Query: 2 RNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTS 61
+ + D LG + P I + +A A AA + M+L
Sbjct: 41 LALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILL 100
Query: 62 LEE-------VRAQNPSTTLWLQMYIFKDRALSLQMVQRA-ERSGYSAIVITMDTAVLGS 113
VR P L + + + R + R E A+ ++
Sbjct: 101 ERPEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAV 160
Query: 114 RYHISKFRDI 123
+ + FR +
Sbjct: 161 QRGDTDFRGL 170
>3mdn_A Glutamine aminotransferase class-II domain protei; structural
genomics, PSI-2, protein structure initiative; 2.09A
{Ruegeria pomeroyi}
Length = 274
Score = 32.8 bits (74), Expect = 0.45
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 520 AMCRLLGYQGIAVVMEELLK-IVTSLIQGSL 549
++CR Y G + +E+++ SLI S
Sbjct: 2 SLCRWAAYHGTPIFLEDVISRPGHSLIAQSA 32
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 29.3 bits (65), Expect = 4.4
Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 20/76 (26%)
Query: 572 GSPGVLGYYHAQLNDIVQYPDAKTELFHNFRELGNTILFCLLM---EQALSQEEVCD--- 625
GS G+ Q V Y E + + ++ E S +
Sbjct: 114 GSVGMA----IQ----VNYSSEVKENSVDSDDKAKVPPLIRIVSGLEL--SDTKQKGKKF 163
Query: 626 LLHAA-PFQNI---LP 637
L+ A PF+NI LP
Sbjct: 164 LVIAYEPFENIAIELP 179
>2vha_A Periplasmic binding transport protein; periplasmic binding protein,
ligand binding, ultrahigh resolution; HET: GLU; 1.00A
{Shigella flexneri} PDB: 2ia4_A*
Length = 287
Score = 29.3 bits (66), Expect = 6.0
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 59 TTSLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQ--RAERSGYSAIVITMDTAVLGSRYH 116
TTS + N + +++ KD S + ++ RA MD A+L
Sbjct: 139 TTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAV-------AFMMDDALLAGERA 191
Query: 117 ISK 119
+K
Sbjct: 192 KAK 194
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification;
HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3
b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A
1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A*
2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X*
2jl3_A* ...
Length = 336
Score = 28.6 bits (64), Expect = 9.9
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 34 HADGEVATARAAGMMDAIMIL 54
+G V +GM +M+L
Sbjct: 131 APEGMVPWHVVSGMSGTLMVL 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.427
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,739,563
Number of extensions: 846869
Number of successful extensions: 2022
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1979
Number of HSP's successfully gapped: 29
Length of query: 873
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 771
Effective length of database: 3,853,851
Effective search space: 2971319121
Effective search space used: 2971319121
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.2 bits)