RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7088
(873 letters)
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 77.7 bits (190), Expect = 1e-15
Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 17/236 (7%)
Query: 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAH---ADGEVATARAAGMMDAIMILSLM 57
+ +V D +LG+ P ++ +A+ KL + + +VA G+ ++S +
Sbjct: 74 LVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTL 133
Query: 58 STTSLEEVR--AQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRY 115
++ S EE+ A + W Q+Y+ DR ++ +V+ E+ G A+ +T+D LG R
Sbjct: 134 ASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQRE 193
Query: 116 H-----------ISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKD 164
K + E S G + ++ D S+ W D+ L + TKLPIV K
Sbjct: 194 KDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKG 253
Query: 165 SLQQCCDLSQLWYR-EFYLEMTMGRRIQKCVVRHQHNEECSDLITMEKRIQFPIEM 219
+ + + G R + I ++ ++ +E+
Sbjct: 254 VQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEV 309
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 359
Score = 75.7 bits (185), Expect = 4e-15
Identities = 69/233 (29%), Positives = 103/233 (44%), Gaps = 25/233 (10%)
Query: 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 60
+ +V + D T+LG + P+ IAP+AMQK+AH +GE ATARAA IM LS +T+
Sbjct: 52 LIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATS 111
Query: 61 SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAV---------- 110
S+EEV + P + Q+Y++KDR + Q+V+RAER+G+ AI +T+DT
Sbjct: 112 SVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKN 170
Query: 111 -------LGSRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCK 163
L + + SGL+ YVA Q D S+ W DV L T LPI+ K
Sbjct: 171 RFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVK 230
Query: 164 DSLQ-------QCCDLSQLWYREFYLEMTMGRRIQKCVVRHQHNEECSDLITM 209
+ + + + +
Sbjct: 231 GVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVF 283
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 349
Score = 73.8 bits (180), Expect = 1e-14
Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 12/206 (5%)
Query: 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 60
+R++ D+ T+ G P+ I+P+A +A DGE +TARAA + ++S ++
Sbjct: 51 LRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASY 110
Query: 61 SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRYHISK- 119
SLE++ A P W Q+Y+ D + QMVQRAE G+ A+VIT+DT VLG+R +
Sbjct: 111 SLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRN 170
Query: 120 ---------FRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDSLQ--Q 168
+D+ A + + S W+D+ L T+LPI+ K L
Sbjct: 171 QLNLEANILLKDLRALKEEKPTQSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKED 230
Query: 169 CCDLSQLWYREFYLEMTMGRRIQKCV 194
+ + + GR++ +
Sbjct: 231 AELAMKHNVQGIVVSNHGGRQLDEVS 256
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
{Bacillus subtilis [TaxId: 1423]}
Length = 329
Score = 72.2 bits (176), Expect = 5e-14
Identities = 17/175 (9%), Positives = 40/175 (22%), Gaps = 27/175 (15%)
Query: 2 RNVCDRDSGLTVLGTRYRCPVGIAP-SAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 60
+ D + P+ I + + + ARAA + + +
Sbjct: 18 LALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA 77
Query: 61 SLEEVRAQNPSTT-----LWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLGSRY 115
+ + L A + Q + E G +A+ I ++
Sbjct: 78 LKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMP 137
Query: 116 HISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCKDSLQQCC 170
S + + +P++ K+
Sbjct: 138 E---------------------GDRSFSGALKRIEQICSRVSVPVIVKEVGFGMS 171
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 67.2 bits (163), Expect = 1e-12
Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 8/128 (6%)
Query: 3 NVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTTSL 62
+ + D LG + P I + +A A AA + M+L
Sbjct: 20 ALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILLE 79
Query: 63 EE-------VRAQNPSTTLWLQMYIFKDRALSLQMVQRA-ERSGYSAIVITMDTAVLGSR 114
VR P L + + + R + R E A+ ++ +
Sbjct: 80 RPEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQ 139
Query: 115 YHISKFRD 122
+ FR
Sbjct: 140 RGDTDFRG 147
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 353
Score = 58.8 bits (141), Expect = 1e-09
Identities = 40/220 (18%), Positives = 71/220 (32%), Gaps = 22/220 (10%)
Query: 1 MRNVCDRDSGLTVLGTRYRCPVGIAPSAMQKLAHADGEVATARAAGMMDAIMILSLMSTT 60
+ +V R VLG R P+ I P+ + G++A ARAA +LS S
Sbjct: 51 LVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNM 110
Query: 61 SLEEVRAQNPSTTLWLQMYIFKDRALSLQMVQRAERSGYSAIVITMDTAVLG-------- 112
S+E++ Q R ++ MV +A +GY+ +V+T D AV G
Sbjct: 111 SIEDLARQCD--GDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHN 168
Query: 113 ---------SRYHISKFRDISAEECSSGLTDYVANQFDDSVDWDDVRSLVQATKLPIVCK 163
+ + ++ Q D S +W+ +R L ++ K
Sbjct: 169 RFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVK 228
Query: 164 DSLQQCCDLSQLWYREFYLEMTMGRRIQKCVVRHQHNEEC 203
+ + + +
Sbjct: 229 ---GLLSAEDADRCIAEGADGVILSNHGGRQLDCAISPME 265
>d1r12a_ c.23.14.3 (A:) ADP ribosyl cyclase {California sea hare
(Aplysia californica) [TaxId: 6500]}
Length = 251
Score = 29.8 bits (67), Expect = 1.4
Identities = 18/100 (18%), Positives = 27/100 (27%), Gaps = 25/100 (25%)
Query: 398 DYDAMLHEANHNVLAPYGRITLHIFWELNYDFLPNYCYNGATNRITL----------HIF 447
Y A + P ++ +FW YD +Y G ITL +
Sbjct: 57 SYKDFFTSAQQQL--PKNKV---MFWSGVYDEAHDYANTGR-KYITLEDTLPGYMLNSLV 110
Query: 448 W-------ELNYDFLPNY--CYNGATNRFIKCRGIMFTQQ 478
W N P++ C A F +
Sbjct: 111 WCGQRANPGFNEKVCPDFKTCPVQARESFWGMASSSYAHS 150
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 253
Score = 29.3 bits (66), Expect = 1.6
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 210 EKRIQFPIEMSMPWILTDHILKTKEPSMMEYVLY 243
E R+ F MS+ L+D ++K EP M+ + +Y
Sbjct: 126 ELRLPFSAAMSID-KLSDVVMKATEPQMVLFNIY 158
>d1isia_ c.23.14.3 (A:) Bone marror stromal cell antigen 1,
BST-1/CD157 (ADP ribosyl cyclase-2) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 250
Score = 27.5 bits (61), Expect = 6.6
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 398 DYDAMLHEANHNVLAPYGRITLHIFWELNYDFLPNYCYNGATNRITL----------HIF 447
DYD + + H++ P + +FWE ++ + ++ N + L +
Sbjct: 56 DYDLFITLSRHSI--PRDKS---LFWENSHLLVNSFADNTR-RFMPLSDVLYGRVADFLS 109
Query: 448 W-------ELNYDFLP--NYCYNGATNRFIKCRGIMFTQQ 478
W L+Y P C N + F K I +++
Sbjct: 110 WCRQKADSGLDYQSCPTSEDCENNPVDSFWKRASIQYSKD 149
>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8
{Human (Homo sapiens) [TaxId: 9606]}
Length = 219
Score = 27.0 bits (60), Expect = 7.2
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 210 EKRIQFPIEMSMPWILTDHILKTKEPSMMEYVLY 243
E ++ F + + D ILK EP M+ + LY
Sbjct: 118 ELQLPFQACLKVE-KFGDLILKATEPQMVLFNLY 150
>d2g3ba2 a.121.1.1 (A:74-189) Putative transcriptional regulator
{Rhodococcus sp. rha1 [TaxId: 101510]}
Length = 116
Score = 26.1 bits (57), Expect = 8.2
Identities = 5/37 (13%), Positives = 12/37 (32%)
Query: 32 LAHADGEVATARAAGMMDAIMILSLMSTTSLEEVRAQ 68
D + +++ + L S E+ R+
Sbjct: 70 SRSLDPQPTAVTMTALVEGLSGRWLCKEISTEDARSH 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.138 0.427
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,342,911
Number of extensions: 161090
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 18
Length of query: 873
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 780
Effective length of database: 1,130,706
Effective search space: 881950680
Effective search space used: 881950680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.9 bits)