Query psy709
Match_columns 508
No_of_seqs 259 out of 343
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 17:54:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04831 Popeye: Popeye protei 100.0 1.3E-42 2.7E-47 319.1 17.1 143 161-304 1-144 (153)
2 PRK09392 ftrB transcriptional 99.6 6.3E-15 1.4E-19 142.6 17.0 158 168-335 13-179 (236)
3 PRK11753 DNA-binding transcrip 99.6 1.9E-14 4.1E-19 136.2 16.6 151 175-335 8-174 (211)
4 PRK11161 fumarate/nitrate redu 99.6 7.3E-14 1.6E-18 134.9 15.7 156 168-335 17-190 (235)
5 PRK09391 fixK transcriptional 99.5 6.2E-13 1.3E-17 129.5 14.9 137 186-335 35-185 (230)
6 PRK10402 DNA-binding transcrip 99.5 8.2E-13 1.8E-17 128.0 14.7 122 188-314 30-161 (226)
7 TIGR03697 NtcA_cyano global ni 99.4 1.3E-12 2.8E-17 121.8 13.8 131 197-335 1-149 (193)
8 cd00038 CAP_ED effector domain 99.4 1.3E-12 2.8E-17 108.2 11.9 105 174-285 4-113 (115)
9 COG0664 Crp cAMP-binding prote 99.4 3.3E-12 7.1E-17 118.5 15.0 148 175-335 11-177 (214)
10 PRK13918 CRP/FNR family transc 99.4 6.2E-12 1.3E-16 118.5 13.6 136 188-335 5-155 (202)
11 PF00027 cNMP_binding: Cyclic 99.3 7.6E-12 1.7E-16 101.4 9.0 85 192-281 2-91 (91)
12 smart00100 cNMP Cyclic nucleot 99.2 1.7E-10 3.7E-15 95.7 12.7 106 174-284 4-114 (120)
13 PLN03192 Voltage-dependent pot 99.0 2.3E-09 5E-14 122.7 13.9 123 169-304 381-507 (823)
14 PLN02868 acyl-CoA thioesterase 98.9 7.1E-09 1.5E-13 110.0 13.4 101 169-280 15-119 (413)
15 COG2905 Predicted signal-trans 98.7 1.9E-07 4.2E-12 101.7 13.4 109 174-289 17-126 (610)
16 KOG0498|consensus 98.5 2.6E-07 5.6E-12 104.3 9.0 120 170-299 427-553 (727)
17 KOG0614|consensus 98.4 3.6E-07 7.7E-12 99.0 6.7 98 174-278 164-261 (732)
18 KOG1113|consensus 98.3 1.2E-06 2.6E-11 91.0 8.4 105 170-284 130-235 (368)
19 KOG0614|consensus 97.8 1.8E-05 3.9E-10 86.2 4.8 106 169-283 279-391 (732)
20 KOG0500|consensus 97.7 0.00038 8.2E-09 75.4 13.2 108 177-287 320-431 (536)
21 KOG0501|consensus 97.6 3.6E-05 7.8E-10 84.4 3.5 108 176-288 560-667 (971)
22 KOG1113|consensus 97.3 0.00057 1.2E-08 71.6 7.3 110 159-277 231-347 (368)
23 KOG0499|consensus 97.3 0.0016 3.4E-08 72.2 10.7 111 175-289 538-651 (815)
24 KOG2968|consensus 97.3 0.00034 7.3E-09 80.1 5.7 109 180-299 500-614 (1158)
25 KOG2968|consensus 97.1 0.0014 3.1E-08 75.1 8.3 108 191-303 387-506 (1158)
26 PRK11832 putative DNA-binding 96.6 0.037 7.9E-07 54.7 12.8 98 187-289 20-119 (207)
27 PF07883 Cupin_2: Cupin domain 92.7 0.47 1E-05 37.1 6.6 68 191-267 2-70 (71)
28 COG3718 IolB Uncharacterized e 91.2 0.49 1.1E-05 47.7 6.3 73 189-269 31-110 (270)
29 PF04962 KduI: KduI/IolB famil 84.4 2.8 6E-05 42.9 6.9 79 189-271 29-109 (261)
30 COG0662 {ManC} Mannose-6-phosp 79.8 5.1 0.00011 36.1 6.2 54 187-241 36-89 (127)
31 PRK13290 ectC L-ectoine syntha 76.6 12 0.00026 34.1 7.6 67 191-268 39-107 (125)
32 PRK11171 hypothetical protein; 70.1 19 0.00041 36.7 8.0 72 189-268 63-135 (266)
33 TIGR03214 ura-cupin putative a 68.6 19 0.0004 36.6 7.6 73 189-269 60-133 (260)
34 smart00835 Cupin_1 Cupin. This 68.5 23 0.00049 32.3 7.5 76 189-271 32-112 (146)
35 PRK09943 DNA-binding transcrip 66.2 28 0.0006 33.0 7.9 69 192-268 112-180 (185)
36 COG1917 Uncharacterized conser 61.3 17 0.00036 32.4 5.1 51 189-241 45-96 (131)
37 PF05899 Cupin_3: Protein of u 60.6 10 0.00022 31.2 3.3 41 194-238 14-55 (74)
38 PRK11171 hypothetical protein; 57.5 56 0.0012 33.3 8.7 49 189-238 186-234 (266)
39 KOG3542|consensus 51.9 33 0.00071 39.9 6.4 76 195-276 311-388 (1283)
40 PF05726 Pirin_C: Pirin C-term 48.7 66 0.0014 27.9 6.6 70 192-273 4-74 (104)
41 PF12973 Cupin_7: ChrR Cupin-l 44.6 84 0.0018 26.3 6.5 64 188-266 25-88 (91)
42 COG4101 Predicted mannose-6-ph 40.1 1.5E+02 0.0033 27.6 7.6 62 189-250 48-112 (142)
43 PF10688 Imp-YgjV: Bacterial i 39.6 51 0.0011 31.3 4.8 76 45-155 88-163 (163)
44 TIGR02272 gentisate_1_2 gentis 38.8 91 0.002 33.3 7.0 74 191-275 254-327 (335)
45 PHA00672 hypothetical protein 37.3 73 0.0016 29.8 5.2 72 187-270 47-118 (152)
46 TIGR03037 anthran_nbaC 3-hydro 34.3 83 0.0018 30.2 5.3 56 208-272 48-106 (159)
47 PRK13264 3-hydroxyanthranilate 33.6 1.1E+02 0.0024 29.9 6.1 57 207-272 53-112 (177)
48 PF01050 MannoseP_isomer: Mann 32.9 1.2E+02 0.0027 28.5 6.2 49 189-238 65-113 (151)
49 TIGR03404 bicupin_oxalic bicup 31.2 1.8E+02 0.0038 31.3 7.8 75 189-270 247-325 (367)
50 PRK15460 cpsB mannose-1-phosph 30.4 2E+02 0.0043 32.1 8.3 48 190-238 388-435 (478)
51 COG3257 GlxB Uncharacterized p 28.4 2.5E+02 0.0055 28.7 7.7 71 191-269 65-136 (264)
52 TIGR01479 GMP_PMI mannose-1-ph 28.2 2.4E+02 0.0051 31.1 8.4 49 190-239 379-427 (468)
53 TIGR03214 ura-cupin putative a 26.0 1.5E+02 0.0033 30.1 6.0 52 188-241 180-232 (260)
54 PF02311 AraC_binding: AraC-li 24.6 1.2E+02 0.0026 25.5 4.3 31 207-238 22-52 (136)
55 COG4766 EutQ Ethanolamine util 24.2 97 0.0021 29.9 3.8 30 208-238 118-147 (176)
56 PRK15457 ethanolamine utilizat 23.2 1.2E+02 0.0026 30.9 4.5 29 209-238 176-204 (233)
57 TIGR02451 anti_sig_ChrR anti-s 22.3 1.9E+02 0.004 28.7 5.6 72 189-273 129-200 (215)
58 TIGR03404 bicupin_oxalic bicup 22.0 1.9E+02 0.0042 31.0 6.1 49 189-238 69-121 (367)
59 PF06249 EutQ: Ethanolamine ut 21.9 1.2E+02 0.0026 29.0 4.0 50 208-267 95-144 (152)
60 COG3462 Predicted membrane pro 21.8 2.4E+02 0.0051 25.8 5.5 55 130-185 53-113 (117)
61 PF11699 CENP-C_C: Mif2/CENP-C 21.0 3E+02 0.0066 23.6 5.9 70 189-266 14-83 (85)
62 PF15652 Tox-SHH: HNH/Endo VII 20.9 30 0.00065 30.8 -0.2 23 484-507 66-88 (100)
63 PF13074 DUF3938: Protein of u 20.3 56 0.0012 28.0 1.3 18 442-459 68-86 (102)
No 1
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=100.00 E-value=1.3e-42 Score=319.06 Aligned_cols=143 Identities=48% Similarity=0.805 Sum_probs=141.4
Q ss_pred hHHHHHHhhcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeeccc
Q psy709 161 DFEEVYTNLFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSP 240 (508)
Q Consensus 161 E~~~lY~~lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~ 240 (508)
|++++|+++|+||++|+++|++|++|+ ++++++++||.|++||+|++|+|++++||+++|+++|++||+|+|.||+|||
T Consensus 1 Ele~lY~~lF~Pl~Vs~~~Fk~iv~~~-~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~fLH~I~p~qFlDSP 79 (153)
T PF04831_consen 1 ELEELYETLFQPLKVSRQQFKKIVGCC-CEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRFLHYIYPYQFLDSP 79 (153)
T ss_pred CHHHHHHHhccCcCCCHHHHHHHHhhh-ceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCEeeEeecccccccCh
Confidence 789999999999999999999999986 9999999999999999999999999999999999999999999999999999
Q ss_pred cccc-ccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh
Q psy709 241 EFES-RANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK 304 (508)
Q Consensus 241 e~~s-~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k 304 (508)
||++ +|++++.|||||+|+|+|||++|+|++|+.++.++|+|+.+|++++|+|+++||+++|++
T Consensus 80 EW~s~~~s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGkDI~~KLy~ln~~ 144 (153)
T PF04831_consen 80 EWESLRPSEDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGKDIAEKLYSLNEK 144 (153)
T ss_pred hhhccccCCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999 999999999999999999999999999999999999999999999999999999999999
No 2
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.64 E-value=6.3e-15 Score=142.64 Aligned_cols=158 Identities=13% Similarity=0.176 Sum_probs=127.5
Q ss_pred hhcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe----CCEEEeecCCCCeecccccc
Q psy709 168 NLFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ----DKQYLHPIATGEFLDSPEFE 243 (508)
Q Consensus 168 ~lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~----dg~~Lh~I~PGqFfGE~e~~ 243 (508)
.+|+. +++++.+.+.. .++.++++||+.+..|| ++.+++++|++|++++++ ++.++..+.||+++|+.+++
T Consensus 13 ~~f~~--L~~~~~~~l~~--~~~~~~~~~ge~l~~~g-~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~ 87 (236)
T PRK09392 13 PLFAD--MADATFERLMR--GAFLQRFPPGTMLITEG-EPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVV 87 (236)
T ss_pred ccccC--CCHHHHHHHHh--hcceeecCCCCEEEeCC-CccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHh
Confidence 35775 58999999995 58899999999999999 778999999999999986 33788999999999999988
Q ss_pred cccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhhhhhcccccc
Q psy709 244 SRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK-----VGRRTGLISSEIMT 318 (508)
Q Consensus 244 s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k-----i~Ri~s~Ls~~~~~ 318 (508)
+ +..++++++|.++|+++.++++++++++.++|.+.+.+...+++.+.+...+..+. .+|++.+|+....
T Consensus 88 ~----~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rla~~Ll~~~~- 162 (236)
T PRK09392 88 L----DAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLVKSLKNQKLRSSAERLANYLLKQSL- 162 (236)
T ss_pred C----CCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc-
Confidence 7 45677889999999999999999999999999999977766554444443333332 3899999985544
Q ss_pred cCCeeeEeeeccccccc
Q psy709 319 EKGSHLDIRLPCVTSAI 335 (508)
Q Consensus 319 ~~G~~~dirLp~~~~~L 335 (508)
+.|....+++|.+++++
T Consensus 163 ~~~~~~~~~i~~t~~~i 179 (236)
T PRK09392 163 RQGGADVVTLPYEKRVL 179 (236)
T ss_pred ccCCCcEEEeeCCHHHH
Confidence 33445568888877665
No 3
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.61 E-value=1.9e-14 Score=136.18 Aligned_cols=151 Identities=10% Similarity=0.138 Sum_probs=117.8
Q ss_pred CCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccccccccC
Q psy709 175 VSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFESRANSE 249 (508)
Q Consensus 175 LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~s~pss~ 249 (508)
+|+++.+++.+ .++.++++||+.++.|| ++.+++++|++|.++++. +| ..+..++||+++|+.+.+. ..
T Consensus 8 ~~~~~~~~l~~--~~~~~~~~kg~~l~~~g-~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~---~~ 81 (211)
T PRK11753 8 QTDPTLEWFLS--HCHIHKYPAKSTLIHAG-EKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE---EG 81 (211)
T ss_pred CCHHHHHHHHh--hCeEEEeCCCCEEEeCC-CCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhcc---CC
Confidence 48999999995 68999999999999999 788999999999999986 33 6888999999999988887 22
Q ss_pred CceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh---------hhhhhhhhccccc--c
Q psy709 250 NKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK---------VGRRTGLISSEIM--T 318 (508)
Q Consensus 250 ~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k---------i~Ri~s~Ls~~~~--~ 318 (508)
..++++++|.|||+++.+++++++++++++|.+...+... +++|+..+.++ .+|++.+|..... .
T Consensus 82 ~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~ 157 (211)
T PRK11753 82 QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQ----MARRLQNTSRKVGDLAFLDVTGRIAQTLLDLAKQPD 157 (211)
T ss_pred CCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcC
Confidence 3577889999999999999999999999999998766544 44555444444 2888888762211 0
Q ss_pred cCCeeeEeeeccccccc
Q psy709 319 EKGSHLDIRLPCVTSAI 335 (508)
Q Consensus 319 ~~G~~~dirLp~~~~~L 335 (508)
.......+++|.++++|
T Consensus 158 ~~~~~~~~~~~~t~~~l 174 (211)
T PRK11753 158 AMTHPDGMQIKITRQEI 174 (211)
T ss_pred CcCCCCceecCCCHHHH
Confidence 00011236677787777
No 4
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.56 E-value=7.3e-14 Score=134.93 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=120.9
Q ss_pred hhcCCCCCCHHHHHHHhccccc-EEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccc
Q psy709 168 NLFEPFKVSRLQFKKLVNDQVI-KTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPE 241 (508)
Q Consensus 168 ~lF~pL~LS~eqf~~Ll~c~~a-~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e 241 (508)
....|.+++++++++|.+ .. ..+.++|||.++.|| ++.+++|+|++|.++++. +| .++.+..||+++|+++
T Consensus 17 ~~~~~~~l~~~~l~~L~~--~~~~~~~~~kge~l~~~G-d~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~ 93 (235)
T PRK11161 17 QLCIPFTLNEHELDQLDN--IIERKKPIQKGQTLFKAG-DELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDA 93 (235)
T ss_pred ccccccCCCHHHHHHHHH--hhhhceeecCCCEeECCC-CCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecccc
Confidence 356677899999999985 34 457899999999999 778999999999999987 23 6888899999999876
Q ss_pred cccccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh---------hhhhhhhh
Q psy709 242 FESRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK---------VGRRTGLI 312 (508)
Q Consensus 242 ~~s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k---------i~Ri~s~L 312 (508)
..+ +.++++++|.|+|+++.++++++++++.++|.+...+.+.++ +|+..++++ -+|++.+|
T Consensus 94 ~~~-----~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~Rla~~L 164 (235)
T PRK11161 94 IGS-----GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMS----GEIKGDQEMILLLSKKNAEERLAAFI 164 (235)
T ss_pred ccC-----CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHH----HHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 654 345678999999999999999999999999999987776644 444433333 28999999
Q ss_pred cccccc---cCCeeeEeeeccccccc
Q psy709 313 SSEIMT---EKGSHLDIRLPCVTSAI 335 (508)
Q Consensus 313 s~~~~~---~~G~~~dirLp~~~~~L 335 (508)
...... ..+....+.+|.+.+++
T Consensus 165 ~~l~~~~~~~~~~~~~~~~~lt~~~i 190 (235)
T PRK11161 165 YNLSRRFAQRGFSPREFRLTMTRGDI 190 (235)
T ss_pred HHHHHHHhhcCCCCceeEccccHHHH
Confidence 732210 01122367788888877
No 5
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.48 E-value=6.2e-13 Score=129.55 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=109.7
Q ss_pred ccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccccccccCCceeEEEEEec
Q psy709 186 DQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFESRANSENKFKVSIIAHT 260 (508)
Q Consensus 186 c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~E 260 (508)
|..++.++++||+.++.+| ++.+++|+|++|.+++++ +| .++.++.||+++|+. . ...++++++|++
T Consensus 35 ~~~~~~~~~~kge~l~~~G-d~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~----~~~~~~~~~A~~ 106 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEG-EPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---S----GSTHRFTAEAIV 106 (230)
T ss_pred cceeeeEEECCCCEEECCC-CCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---C----CCcCCeEEEEcC
Confidence 3568899999999999999 788999999999999987 34 588899999999953 2 344678899999
Q ss_pred cEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhhhhhcccccccCCeeeEeeeccc
Q psy709 261 TCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNKV---------GRRTGLISSEIMTEKGSHLDIRLPCV 331 (508)
Q Consensus 261 dcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ki---------~Ri~s~Ls~~~~~~~G~~~dirLp~~ 331 (508)
||+++.++++++++++.++|.+...+... +++|++.+.+++ +|++.+|+.... +.|....+.+|.+
T Consensus 107 ds~v~~i~~~~f~~l~~~~p~l~~~l~~~----l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~~-~~g~~~~i~i~lt 181 (230)
T PRK09391 107 DTTVRLIKRRSLEQAAATDVDVARALLSL----TAGGLRHAQDHMLLLGRKTAMERVAAFLLEMDE-RLGGAGMMALPMS 181 (230)
T ss_pred ceEEEEEEHHHHHHHHhhChHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HhCCCCEEEecCC
Confidence 99999999999999999999999977755 555555555542 899999985433 3333345677878
Q ss_pred cccc
Q psy709 332 TSAI 335 (508)
Q Consensus 332 ~~~L 335 (508)
.+++
T Consensus 182 ~~~I 185 (230)
T PRK09391 182 RRDI 185 (230)
T ss_pred HHHH
Confidence 7877
No 6
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.47 E-value=8.2e-13 Score=128.02 Aligned_cols=122 Identities=11% Similarity=0.133 Sum_probs=100.1
Q ss_pred ccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccccccccCCceeEEEEEeccE
Q psy709 188 VIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTC 262 (508)
Q Consensus 188 ~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~Edc 262 (508)
.++.+.++||+.++.+| ++.+.+++|++|.++++. +| .++....||+++|+.++++ +..++++++|.|||
T Consensus 30 ~~~~~~~~kge~l~~~G-~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~----~~~~~~~~~A~~~~ 104 (226)
T PRK10402 30 DTELFHFLAREYIVQEG-QQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELID----KDHETKAVQAIEEC 104 (226)
T ss_pred hhhheeeCCCCEEEcCC-CCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhc----CCCCCccEEEeccE
Confidence 47789999999999999 788999999999999987 33 5889999999999999887 45677789999999
Q ss_pred EEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhhhhhcc
Q psy709 263 RIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK-----VGRRTGLISS 314 (508)
Q Consensus 263 rVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k-----i~Ri~s~Ls~ 314 (508)
+++.++++++++++.++|.+...+...++..+.+......+. -+|++.+|+.
T Consensus 105 ~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rla~~L~~ 161 (226)
T PRK10402 105 WCLALPMKDCRPLLLNDALFLRKLCKFLSHKNYRNIVSLTQNQSFPLENRLAAFILL 161 (226)
T ss_pred EEEEEEHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 999999999999999999988876666554433333322221 2899999874
No 7
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.45 E-value=1.3e-12 Score=121.78 Aligned_cols=131 Identities=9% Similarity=0.102 Sum_probs=102.8
Q ss_pred CCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeeccccccc-ccccCCceeEEEEEeccEEEEEEehH
Q psy709 197 GEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFES-RANSENKFKVSIIAHTTCRIMYWQRS 270 (508)
Q Consensus 197 Ge~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~s-~pss~~~fqVTI~A~EdcrVL~w~Re 270 (508)
|+.++.|| ++.+++++|++|.|++++ +| .++.+++||++||+.++++ .+ ..+.++++|.+||+++.++++
T Consensus 1 g~~l~~~g-~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~---~~~~~~~~A~~~~~v~~i~~~ 76 (193)
T TIGR03697 1 GKTIFFPG-DPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHR---SDRFYHAVAFTRVELLAVPIE 76 (193)
T ss_pred CCceecCC-CCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCC---CccceEEEEecceEEEEeeHH
Confidence 78999999 788999999999999987 33 5789999999999998887 21 123467999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhhhhhccccc---ccCCeeeEeeeccccccc
Q psy709 271 TLEYLFVKETYLANVMTVLVAKDITTKLYAMNNKV---------GRRTGLISSEIM---TEKGSHLDIRLPCVTSAI 335 (508)
Q Consensus 271 ~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ki---------~Ri~s~Ls~~~~---~~~G~~~dirLp~~~~~L 335 (508)
++++++.++|.+...+.+. +++|+.++.+++ +|++.+|+.... ...+....+++|.+++++
T Consensus 77 ~~~~l~~~~p~l~~~~~~~----l~~~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~~t~~~i 149 (193)
T TIGR03697 77 QVEKAIEEDPDLSMLLLQG----LSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPGQRGVTIDLRLSHQAI 149 (193)
T ss_pred HHHHHHHHChHHHHHHHHH----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCeEEecCCCCHHHH
Confidence 9999999999999977765 555665555442 799998863211 112234578899999988
No 8
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.44 E-value=1.3e-12 Score=108.19 Aligned_cols=105 Identities=17% Similarity=0.255 Sum_probs=94.2
Q ss_pred CCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCC-----EEEeecCCCCeeccccccccccc
Q psy709 174 KVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDK-----QYLHPIATGEFLDSPEFESRANS 248 (508)
Q Consensus 174 ~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg-----~~Lh~I~PGqFfGE~e~~s~pss 248 (508)
++++++.+.+.+ ..+.++++||+.+..+| ++.+++++|++|.+++.+.+ ..++.+.+|+++|+.+++.
T Consensus 4 ~l~~~~~~~l~~--~~~~~~~~~g~~l~~~~-~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~---- 76 (115)
T cd00038 4 GLDDEELEELAD--ALEERRFPAGEVIIRQG-DPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLG---- 76 (115)
T ss_pred cCCHHHHHHHHh--hceeeeeCCCCEEEcCC-CCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhc----
Confidence 358999999995 48999999999999999 77899999999999998733 7889999999999988886
Q ss_pred CCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHH
Q psy709 249 ENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANV 285 (508)
Q Consensus 249 ~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~l 285 (508)
+..++.+++|.++|+++.++++++..+++++|.+...
T Consensus 77 ~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (115)
T cd00038 77 NGPRSATVRALTDSELLVLPRSDFRRLLQEYPELARR 113 (115)
T ss_pred CCCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHh
Confidence 5567888999999999999999999999999988764
No 9
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.43 E-value=3.3e-12 Score=118.49 Aligned_cols=148 Identities=20% Similarity=0.255 Sum_probs=114.9
Q ss_pred CCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccccccccC
Q psy709 175 VSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFESRANSE 249 (508)
Q Consensus 175 LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~s~pss~ 249 (508)
..+++...+. ...+.+.++||+.++.|| ++.+.+|+|++|.++++. +| +++.+++||++|||++.+. +
T Consensus 11 ~~~~~~~~~~--~~~~~~~~~~g~~l~~~g-~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~----~ 83 (214)
T COG0664 11 LPSELLELLA--LKLEVRKLPKGEVLFTEG-EEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG----G 83 (214)
T ss_pred CCHHHHHHHh--hhceeEeeCCCCEEEcCC-CcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc----C
Confidence 3455566665 478999999999999999 788999999999999988 33 6889999999999999998 3
Q ss_pred CceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh---------hhhhhhhhccc-----
Q psy709 250 NKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK---------VGRRTGLISSE----- 315 (508)
Q Consensus 250 ~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k---------i~Ri~s~Ls~~----- 315 (508)
..++++++|.+||+++.++++++++++.++|.+...+... +++|+.+..+. .+|++.++...
T Consensus 84 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~----~~~~l~~~~~~~~~~~~~~~~~r~~~~l~~l~~~~~ 159 (214)
T COG0664 84 DPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRL----LARRLRQALERLSLLARKDVEERLARFLLNLGRRLG 159 (214)
T ss_pred CCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHH----HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhccC
Confidence 3677889999999999999999998877788888877655 55555555554 27888887722
Q ss_pred ccccCCeeeEeeeccccccc
Q psy709 316 IMTEKGSHLDIRLPCVTSAI 335 (508)
Q Consensus 316 ~~~~~G~~~dirLp~~~~~L 335 (508)
..+.+|. .+++|.+++.+
T Consensus 160 ~~~~~~~--~~~~~~~~~~i 177 (214)
T COG0664 160 IATEDGI--LIPLPLTHKDL 177 (214)
T ss_pred CCCCCCc--EEeccCCHHHH
Confidence 2222222 45667776666
No 10
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.38 E-value=6.2e-12 Score=118.47 Aligned_cols=136 Identities=14% Similarity=0.126 Sum_probs=97.1
Q ss_pred ccEEEEecCCCeEEeeccc--ccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccccccccCCceeEEEEEec
Q psy709 188 VIKTQTLQPGEAYAVQNIT--RTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFESRANSENKFKVSIIAHT 260 (508)
Q Consensus 188 ~a~vr~lkKGe~la~EGkt--p~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~E 260 (508)
..+.++++||+.++.|| + +.+++++|++|.+++++ +| .+++.+.|||++|++.++. +.++++++|.+
T Consensus 5 ~~~~~~~~kg~~l~~~G-d~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~-----~~~~~~~~A~~ 78 (202)
T PRK13918 5 VVDTVTYRPGAVILYPG-VPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAG-----AERAYFAEAVT 78 (202)
T ss_pred ccceeEecCCCEEEcCC-CCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcC-----CCCCceEEEcC
Confidence 36789999999999999 6 56999999999999988 33 6999999999999976654 34667899999
Q ss_pred cEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhhhhhcccccc--c-CCeeeEeeecccc
Q psy709 261 TCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK-----VGRRTGLISSEIMT--E-KGSHLDIRLPCVT 332 (508)
Q Consensus 261 dcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k-----i~Ri~s~Ls~~~~~--~-~G~~~dirLp~~~ 332 (508)
||+++.++++++ +|.+...+...+.+.+.+......+. -+|++.+|+....+ . .+....+++|.++
T Consensus 79 ~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~~~~~t~ 152 (202)
T PRK13918 79 DSRIDVLNPALM------SAEDNLVLTQHLVRTLARAYESIYRLVGQRLKNRIAAALLELSDTPLATQEDSGETMIYATH 152 (202)
T ss_pred ceEEEEEEHHHc------ChhhHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCCCCCCeEEecCCH
Confidence 999999999987 45554444444333333322222221 28999988732221 0 1122367788888
Q ss_pred ccc
Q psy709 333 SAI 335 (508)
Q Consensus 333 ~~L 335 (508)
++|
T Consensus 153 ~~i 155 (202)
T PRK13918 153 DEL 155 (202)
T ss_pred HHH
Confidence 887
No 11
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.32 E-value=7.6e-12 Score=101.42 Aligned_cols=85 Identities=20% Similarity=0.317 Sum_probs=76.7
Q ss_pred EEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEE
Q psy709 192 QTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMY 266 (508)
Q Consensus 192 r~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~ 266 (508)
++++||+.+..+| ++.+++++|++|.+++.. ++ .++..+.||+++|+.+++. +..++.+++|.++|+++.
T Consensus 2 ~~~~~g~~i~~~g-~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~----~~~~~~~~~a~~~~~~~~ 76 (91)
T PF00027_consen 2 KTYKKGEVIYRQG-DPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLT----GKPSPFTVIALTDSEVLR 76 (91)
T ss_dssp EEESTTEEEEETT-SBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHH----TSBBSSEEEESSSEEEEE
T ss_pred eEECCCCEEEeCC-CcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecC----CCccEEEEEEccCEEEEE
Confidence 7899999999999 678999999999999988 23 4688999999999999998 446777899999999999
Q ss_pred EehHHHHHHHhcchH
Q psy709 267 WQRSTLEYLFVKETY 281 (508)
Q Consensus 267 w~Re~L~~Ll~k~P~ 281 (508)
+++++++++++++|.
T Consensus 77 i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 77 IPREDFLQLLQQDPE 91 (91)
T ss_dssp EEHHHHHHHHHHSHH
T ss_pred EeHHHHHHHHHhCcC
Confidence 999999999999985
No 12
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.23 E-value=1.7e-10 Score=95.66 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=91.4
Q ss_pred CCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeC-----CEEEeecCCCCeeccccccccccc
Q psy709 174 KVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQD-----KQYLHPIATGEFLDSPEFESRANS 248 (508)
Q Consensus 174 ~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~d-----g~~Lh~I~PGqFfGE~e~~s~pss 248 (508)
++++++.+++.+ ..+.++++||+.+..+| ++.+.+++|.+|.+++... +..+..+.+|+++|+.+.+. ..
T Consensus 4 ~l~~~~~~~l~~--~~~~~~~~~g~~l~~~g-~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~--~~ 78 (120)
T smart00100 4 NLDAEELRELAD--ALEPVRYPAGEVIIRQG-DVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLT--NS 78 (120)
T ss_pred CCCHHHHHHHHH--hceEEEeCCCCEEEeCC-CcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhcc--CC
Confidence 468999999994 68899999999999999 6779999999999999873 36889999999999998883 01
Q ss_pred CCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHH
Q psy709 249 ENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLAN 284 (508)
Q Consensus 249 ~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~ 284 (508)
...++++++|.++|++..++++++.....+++.+..
T Consensus 79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 114 (120)
T smart00100 79 RRAASATAVALELATLLRIDFRDFLQLLQENPQLLL 114 (120)
T ss_pred CcccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHH
Confidence 234678899999999999999999999999887765
No 13
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.02 E-value=2.3e-09 Score=122.67 Aligned_cols=123 Identities=16% Similarity=0.212 Sum_probs=103.2
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe----CCEEEeecCCCCeeccccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ----DKQYLHPIATGEFLDSPEFES 244 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~----dg~~Lh~I~PGqFfGE~e~~s 244 (508)
+|+ ++|++.+++|+. ..+.+.+.|||.++.|| ++.+++|+|.+|+|++.. +++++..++|||+|||.+++.
T Consensus 381 lF~--~~s~~~l~~L~~--~~~~~~~~pge~I~~qg-e~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l~ 455 (823)
T PLN03192 381 LFK--GVSREILLLLVT--KMKAEYIPPREDVIMQN-EAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGEVGALC 455 (823)
T ss_pred chh--cCCHHHHHHHHH--hhheeeeCCCCEEEECC-CCCceEEEEEecEEEEEEecCCcceeeEEccCCCEecchHHhc
Confidence 355 468999999985 57889999999999999 677999999999999975 346889999999999999988
Q ss_pred ccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh
Q psy709 245 RANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK 304 (508)
Q Consensus 245 ~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k 304 (508)
....++|++|.++|+++.++|+++.++++++|.....+.+ .+.+++.++.+.
T Consensus 456 ----~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~----~~l~~~~~l~~l 507 (823)
T PLN03192 456 ----CRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILK----NFLQHHKELHDL 507 (823)
T ss_pred ----CCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHH----HHHHHhhhhccc
Confidence 4556788999999999999999999999999998875443 455666555553
No 14
>PLN02868 acyl-CoA thioesterase family protein
Probab=98.95 E-value=7.1e-09 Score=109.98 Aligned_cols=101 Identities=15% Similarity=0.187 Sum_probs=87.3
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe----CCEEEeecCCCCeeccccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ----DKQYLHPIATGEFLDSPEFES 244 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~----dg~~Lh~I~PGqFfGE~e~~s 244 (508)
+|+. +++++++++.+ .+++++++|||.++.+| ++.+++++|++|+++|.+ ++.++..++||++||+. +.
T Consensus 15 ~F~~--L~~~~l~~l~~--~~~~~~~~~Ge~I~~~G-d~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~--l~ 87 (413)
T PLN02868 15 LLQR--LPSSSLKKIAE--VVVPKRYGKGEYVVREG-EPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG--LS 87 (413)
T ss_pred cccc--CCHHHHHHHHH--hceEEEECCCCEEEeCC-CcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh--hC
Confidence 4664 58999999995 58999999999999999 788999999999999987 23678889999999986 44
Q ss_pred ccccCCceeEEEEEeccEEEEEEehHHHHHHHhcch
Q psy709 245 RANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKET 280 (508)
Q Consensus 245 ~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P 280 (508)
+..++++++|.|+|+++.++++++..+..+.+
T Consensus 88 ----~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 88 ----GSVHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred ----CCCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 46688999999999999999999996665544
No 15
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.68 E-value=1.9e-07 Score=101.66 Aligned_cols=109 Identities=13% Similarity=0.175 Sum_probs=96.4
Q ss_pred CCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe-CCEEEeecCCCCeecccccccccccCCce
Q psy709 174 KVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ-DKQYLHPIATGEFLDSPEFESRANSENKF 252 (508)
Q Consensus 174 ~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~-dg~~Lh~I~PGqFfGE~e~~s~pss~~~f 252 (508)
+++++|+.+|. ....++.|+|||.+...| .|.+.|++|.||.|.|.. +|..+.....|+.||=.++++ +..-
T Consensus 17 ~L~~eel~~L~--~~l~v~yy~kge~ii~~~-~p~~~l~vi~kG~vev~~~~g~v~~~~~~gdlFg~~~l~~----~~~~ 89 (610)
T COG2905 17 QLPAEELEQLM--GALEVKYYRKGEIIIYAG-SPVHYLYVIRKGVVEVRSDGGEVLDRLAAGDLFGFSSLFT----ELNK 89 (610)
T ss_pred cCCHHHHHHHH--hhhccccccCCCeeecCC-CCcceeEEEEeceeeEEcCCCeeeeeeccCccccchhhcc----cCCC
Confidence 46899999999 468999999999999999 799999999999999877 567899999999999999998 2333
Q ss_pred eEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHH
Q psy709 253 KVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVL 289 (508)
Q Consensus 253 qVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~l 289 (508)
+-+..|+||+-++.++++.+.++.+++|.+++.+.+-
T Consensus 90 ~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~ 126 (610)
T COG2905 90 QRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRS 126 (610)
T ss_pred cceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHH
Confidence 3448999999999999999999999999999988854
No 16
>KOG0498|consensus
Probab=98.51 E-value=2.6e-07 Score=104.32 Aligned_cols=120 Identities=12% Similarity=0.160 Sum_probs=97.7
Q ss_pred cCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCC----EEEeecCCCCeec-c-cccc
Q psy709 170 FEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDK----QYLHPIATGEFLD-S-PEFE 243 (508)
Q Consensus 170 F~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg----~~Lh~I~PGqFfG-E-~e~~ 243 (508)
|+ +.+++-++.|. ...+..-+.+||++.+|| |++++++||.+|++++...+ .....++|||++| | ..|.
T Consensus 427 F~--~md~~~L~al~--~rlk~~~f~pge~iireG-d~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~ 501 (727)
T KOG0498|consen 427 FA--GMDDGLLDALC--SRLKPEYFTPGEYIIREG-DPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWC 501 (727)
T ss_pred hh--cCCHHHHHHHH--HHhhhhccCCCCeEEecC-CccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHH
Confidence 55 45777788887 457788899999999999 89999999999999999866 8889999999999 5 5566
Q ss_pred c-ccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q psy709 244 S-RANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLY 299 (508)
Q Consensus 244 s-~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~ 299 (508)
. .|+ +.|+.|.|.|+.+.+++++|+..+++.|.+.+.+-+-.-+.++...+
T Consensus 502 ~~~p~-----t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r 553 (727)
T KOG0498|consen 502 LDLPQ-----TRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWR 553 (727)
T ss_pred hcCCC-----CceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhh
Confidence 5 455 45699999999999999999999999998888555432234444433
No 17
>KOG0614|consensus
Probab=98.42 E-value=3.6e-07 Score=98.96 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=86.8
Q ss_pred CCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCcee
Q psy709 174 KVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFK 253 (508)
Q Consensus 174 ~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fq 253 (508)
++.++|+++|+.| ...+++.+|+.+.+|| ++.+++|++.+|++.|+++|+.+..+++|-.|||-+..- .-.-+
T Consensus 164 nLd~~Qi~e~v~~--Myp~~~~~gs~IIreg-e~Gs~~yV~aeG~~~V~~~g~ll~~m~~gtvFGELAILy----nctRt 236 (732)
T KOG0614|consen 164 NLDASQIKELVDC--MYPVEYRAGSWIIREG-EPGSHLYVSAEGELQVSREGKLLGKMGAGTVFGELAILY----NCTRT 236 (732)
T ss_pred hhhHHHHHHHHHh--hCcccccCCcEEEecC-CCCceEEEeecceEEEeeCCeeeeccCCchhhhHHHHHh----CCcch
Confidence 4679999999987 7789999999999999 899999999999999999999999999999999976666 23345
Q ss_pred EEEEEeccEEEEEEehHHHHHHHhc
Q psy709 254 VSIIAHTTCRIMYWQRSTLEYLFVK 278 (508)
Q Consensus 254 VTI~A~EdcrVL~w~Re~L~~Ll~k 278 (508)
|||.|.++|+++.++|+-++...++
T Consensus 237 AsV~alt~~~lWaidR~vFq~IM~~ 261 (732)
T KOG0614|consen 237 ASVRALTDVRLWAIDREVFQAIMMR 261 (732)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 6699999999999999999866544
No 18
>KOG1113|consensus
Probab=98.35 E-value=1.2e-06 Score=91.01 Aligned_cols=105 Identities=12% Similarity=0.239 Sum_probs=91.9
Q ss_pred cCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeeccccccc-cccc
Q psy709 170 FEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFES-RANS 248 (508)
Q Consensus 170 F~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s-~pss 248 (508)
|. +++++|..+++++ ...+++++|+++..|| +..|.+|+|-+|...|++++.-+..+.||..|||-++.. .|..
T Consensus 130 F~--~Ld~eq~~~v~da--m~~~~v~~G~~Vi~qG-deGd~fYvI~kGt~dVyv~~~~v~~~~~g~sFGElALmyn~PRa 204 (368)
T KOG1113|consen 130 FA--NLDDEQLSQVLDA--MFEKRVKAGETVIKQG-DEGDNFYVIDKGTFDVYVNGTYVTTYSPGGSFGELALMYNPPRA 204 (368)
T ss_pred cc--cCCHHHHHHHHHh--hceeeecCCcEEEecC-CcCCcEEEEecceEEEEECCeEEeeeCCCCchhhhHhhhCCCcc
Confidence 66 4589999999964 8899999999999999 778999999999999999999999999999999999998 6665
Q ss_pred CCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHH
Q psy709 249 ENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLAN 284 (508)
Q Consensus 249 ~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~ 284 (508)
+ |+.|.++++++.++|..+++.+..+..-++
T Consensus 205 A-----Tv~a~t~~klWgldr~SFrrIi~~s~~kkr 235 (368)
T KOG1113|consen 205 A-----TVVAKSLKKLWGLDRTSFRRIIMKSCIKKR 235 (368)
T ss_pred c-----ceeeccccceEEEeeceeEEEeeccchhhh
Confidence 5 499999999999999888866666555444
No 19
>KOG0614|consensus
Probab=97.82 E-value=1.8e-05 Score=86.17 Aligned_cols=106 Identities=19% Similarity=0.297 Sum_probs=91.4
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeC------CEEEeecCCCCeeccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQD------KQYLHPIATGEFLDSPEF 242 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~d------g~~Lh~I~PGqFfGE~e~ 242 (508)
+|+. ++++-+.+|+++ .+...|++|+++.+|| +..+.+++|-+|.|+|++. .+.+...+.||+|||-++
T Consensus 279 ~~q~--l~Ee~L~KiaD~--le~~~Yd~g~yIirqg-e~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FGE~al 353 (732)
T KOG0614|consen 279 LFQN--LPEELLLKIADV--LEEEYYDAGEYIIRQG-EKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFGERAL 353 (732)
T ss_pred hhcc--CCHHHHHHHHHH--HHHHhhcCCceEEeec-CCCCeEEEEecceEEEeecCCCCCchhHHhhccccchhhHHHh
Confidence 4664 589999999964 8889999999999999 7889999999999999883 267888999999999999
Q ss_pred ccccccCCceeEEEEEecc-EEEEEEehHHHHHHHhcchHHH
Q psy709 243 ESRANSENKFKVSIIAHTT-CRIMYWQRSTLEYLFVKETYLA 283 (508)
Q Consensus 243 ~s~pss~~~fqVTI~A~Ed-crVL~w~Re~L~~Ll~k~P~L~ 283 (508)
.. ++.-+|+|.|.++ ..++.++|+.+..++-.--.++
T Consensus 354 ~~----edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ 391 (732)
T KOG0614|consen 354 LG----EDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELK 391 (732)
T ss_pred hc----cCccchhhhccCCCceEEEecHHHHHHhcccHHHhh
Confidence 98 6777788999988 9999999999987776655555
No 20
>KOG0500|consensus
Probab=97.73 E-value=0.00038 Score=75.43 Aligned_cols=108 Identities=12% Similarity=0.147 Sum_probs=90.5
Q ss_pred HHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCC--EEEeecCCCCeeccccccc--ccccCCce
Q psy709 177 RLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDK--QYLHPIATGEFLDSPEFES--RANSENKF 252 (508)
Q Consensus 177 ~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg--~~Lh~I~PGqFfGE~e~~s--~pss~~~f 252 (508)
+.-+.+++ ..-+.+-+.|||++.+-| +-.+++++|.+|++.|..|+ ..+..+.+|++|||.+... ....++.-
T Consensus 320 ~~lL~elV--Lklk~qvfSPgDyICrKG-dvgkEMyIVk~G~L~Vv~dDg~t~~~~L~~G~~FGEisIlni~g~~~gNRR 396 (536)
T KOG0500|consen 320 AGLLVELV--LKLKPQVFSPGDYICRKG-DVGKEMYIVKEGKLAVVADDGVTVFVTLKAGSVFGEISILNIKGNKNGNRR 396 (536)
T ss_pred hhHHHHHH--HHhcceeeCCCCeEEecC-cccceEEEEEccEEEEEecCCcEEEEEecCCceeeeeEEEEEcCcccCCcc
Confidence 34445555 356788899999999999 77899999999999998754 5778899999999998888 33345678
Q ss_pred eEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHH
Q psy709 253 KVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMT 287 (508)
Q Consensus 253 qVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~ 287 (508)
++++..+.-+.+.+++|+|+-+.++..|.-...+.
T Consensus 397 tanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~ 431 (536)
T KOG0500|consen 397 TANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLE 431 (536)
T ss_pred eeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHH
Confidence 89999999999999999999999999998777555
No 21
>KOG0501|consensus
Probab=97.62 E-value=3.6e-05 Score=84.43 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=91.3
Q ss_pred CHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEE
Q psy709 176 SRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVS 255 (508)
Q Consensus 176 S~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVT 255 (508)
|+..+|.|+ -..+...-.+||.+...| +.+|.|-||+||..+|.+|+..+..++.||.||+.-|-. ++-+.--++
T Consensus 560 SDGCLRaLA--m~f~~~H~APGDLlYHtG-ESvDaLcFvVsGSLEVIQDDEVVAILGKGDVFGD~FWK~--~t~~qs~AN 634 (971)
T KOG0501|consen 560 SDGCLRALA--MEFQTNHCAPGDLLYHTG-ESVDALCFVVSGSLEVIQDDEVVAILGKGDVFGDEFWKE--NTLGQSAAN 634 (971)
T ss_pred cchhHHHHH--HHHHhccCCCcceeeecC-CccceEEEEEecceEEeecCcEEEEeecCccchhHHhhh--hhhhhhhhh
Confidence 566666666 245666778999999999 789999999999999999999999999999999999987 122334466
Q ss_pred EEEeccEEEEEEehHHHHHHHhcchHHHHHHHH
Q psy709 256 IIAHTTCRIMYWQRSTLEYLFVKETYLANVMTV 288 (508)
Q Consensus 256 I~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~ 288 (508)
+.|.+-|.+-.+.|++|.+.++=....++-|.+
T Consensus 635 VRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaR 667 (971)
T KOG0501|consen 635 VRALTYCDLHMIKRDKLLKVLDFYTAFANSFAR 667 (971)
T ss_pred hhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999888888777654
No 22
>KOG1113|consensus
Probab=97.30 E-value=0.00057 Score=71.57 Aligned_cols=110 Identities=15% Similarity=0.283 Sum_probs=86.3
Q ss_pred ChhHHHHHHhhcCCCCC----CHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe--CCEEEeecC
Q psy709 159 DPDFEEVYTNLFEPFKV----SRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ--DKQYLHPIA 232 (508)
Q Consensus 159 ~~E~~~lY~~lF~pL~L----S~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~--dg~~Lh~I~ 232 (508)
..-.+.+|+.+-+...+ ...|..+++ +.-....|++|+.+.++| ++.|.+++|.+|.+.|.+ +|..+ .+.
T Consensus 231 ~~kkrkMy~~~l~s~pil~~l~k~er~kv~--dal~~k~y~~G~~Vi~qg-~~ge~f~~i~eGEvdv~~~~~~v~v-kl~ 306 (368)
T KOG1113|consen 231 CIKKRKMYEPFLESVPILESLEKLERAKVA--DALGTKSYKDGERVIVQG-DQGEHFYIIEEGEVDVLKKRDGVEV-KLK 306 (368)
T ss_pred chhhhhhhhhhhhcchhhHHHHHHHHHhhh--cccceeeccCCceEEecc-CCcceEEEecccccchhhccCCeEE-Eec
Confidence 34455666655443322 345566677 457788999999999999 689999999999999977 44555 899
Q ss_pred CCCeeccccccc-ccccCCceeEEEEEeccEEEEEEehHHHHHHHh
Q psy709 233 TGEFLDSPEFES-RANSENKFKVSIIAHTTCRIMYWQRSTLEYLFV 277 (508)
Q Consensus 233 PGqFfGE~e~~s-~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~ 277 (508)
+||.|||.++.. .|.. +|+.|.++.+....++..+++++.
T Consensus 307 ~~dyfge~al~~~~pr~-----Atv~a~~~~kc~~~dk~~ferllg 347 (368)
T KOG1113|consen 307 KGDYFGELALLKNLPRA-----ATVVAKGRLKCAKLDKPRFERLLG 347 (368)
T ss_pred hhhhcchHHHHhhchhh-----ceeeccCCceeeeeChHHHHHHhh
Confidence 999999988888 4444 569999999999999999998875
No 23
>KOG0499|consensus
Probab=97.28 E-value=0.0016 Score=72.17 Aligned_cols=111 Identities=11% Similarity=0.219 Sum_probs=93.3
Q ss_pred CCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CCEEEeecCCCCeecccccccccccCCc
Q psy709 175 VSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DKQYLHPIATGEFLDSPEFESRANSENK 251 (508)
Q Consensus 175 LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg~~Lh~I~PGqFfGE~e~~s~pss~~~ 251 (508)
-.++-++.++. .-+-..+=+||.+...| +-.+++|+|.-|.|.|.- ++.++..+..|..|||.++.. ...++.
T Consensus 538 Cdr~mirDmll--rLRsV~yLPgDfVCkKG-eiGkEMYIIk~GqvQVlGGp~~~~Vl~tL~~GsVFGEISLLa-igG~nR 613 (815)
T KOG0499|consen 538 CDRQMIRDMLL--RLRSVLYLPGDFVCKKG-EIGKEMYIIKHGQVQVLGGPDGTKVLVTLKAGSVFGEISLLA-IGGGNR 613 (815)
T ss_pred hHHHHHHHHHH--HhhceeecCCceeeecc-cccceeEEeecceEEEecCCCCCEEEEEecccceeeeeeeee-ecCCCc
Confidence 34566666663 45667799999999999 677999999999999976 237999999999999999998 333445
Q ss_pred eeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHH
Q psy709 252 FKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVL 289 (508)
Q Consensus 252 fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~l 289 (508)
-.|+|.|-.=|.++++++++|++.+.+.|.-.+++++-
T Consensus 614 RTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkk 651 (815)
T KOG0499|consen 614 RTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKK 651 (815)
T ss_pred cchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHH
Confidence 66789999999999999999999999999999988754
No 24
>KOG2968|consensus
Probab=97.27 E-value=0.00034 Score=80.07 Aligned_cols=109 Identities=14% Similarity=0.290 Sum_probs=90.3
Q ss_pred HHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeC---C--EEEeecCCCCeeccccccc-ccccCCcee
Q psy709 180 FKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQD---K--QYLHPIATGEFLDSPEFES-RANSENKFK 253 (508)
Q Consensus 180 f~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~d---g--~~Lh~I~PGqFfGE~e~~s-~pss~~~fq 253 (508)
+-+.++ ....|..+++|+.++++| |+.|.+|+|++||+|-..+ | .++...+.||.+|++|... +|..
T Consensus 500 ~lr~~D-~AldWv~l~~g~alyrqg-D~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~----- 572 (1158)
T KOG2968|consen 500 FLRKLD-FALDWVRLEPGQALYRQG-DSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRA----- 572 (1158)
T ss_pred HHhhhh-hhcceEEeccccHHHhcC-CccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCcc-----
Confidence 334444 357899999999999999 8999999999999997553 2 3677789999999999998 4443
Q ss_pred EEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q psy709 254 VSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLY 299 (508)
Q Consensus 254 VTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~ 299 (508)
.|+.|+-|+++..+|..-+..+..++|.....+.++ +++|..
T Consensus 573 tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~l----l~~~~~ 614 (1158)
T KOG2968|consen 573 TTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKL----LAEKIL 614 (1158)
T ss_pred ceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHH----HHHHhh
Confidence 469999999999999999999999999998877777 555553
No 25
>KOG2968|consensus
Probab=97.08 E-value=0.0014 Score=75.14 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=80.4
Q ss_pred EEEecCCCeE-EeecccccCeEEEEEeceEEEEe-----------CCEEEeecCCCCeecccccccccccCCceeEEEEE
Q psy709 191 TQTLQPGEAY-AVQNITRTDRLALLLTGKAYVAQ-----------DKQYLHPIATGEFLDSPEFESRANSENKFKVSIIA 258 (508)
Q Consensus 191 vr~lkKGe~l-a~EGktp~d~L~lLLSGrVrVs~-----------dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A 258 (508)
.+.++|.-.+ +++| +....++++.+|...|.+ .|.-++.++||+++|..+.++ +..--.||+|
T Consensus 387 ll~~~keitiiv~q~-a~~~gl~~ii~g~l~v~~sm~~~s~~~~~~~~~~f~v~pG~ivgyla~lt----~e~S~~tirA 461 (1158)
T KOG2968|consen 387 LLELEKEITIIVEQG-ARDVGLYYIIKGSLSVYQSMYDVSGNLVLAGMLLFVVGPGEIVGYLAILT----NEPSFITIRA 461 (1158)
T ss_pred hhccccceEEEEecc-cccceeeEEeecceeeeehhcccccccccccceEEEecCCceechhhhhc----CCcceEEEEE
Confidence 3445555455 5556 788999999999998865 357889999999999988887 4444577999
Q ss_pred eccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhh
Q psy709 259 HTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNN 303 (508)
Q Consensus 259 ~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ 303 (508)
.+||+|..++|+++++++.++|.+.--+.+-+.++++..++.+..
T Consensus 462 rsdt~v~~isrs~l~~~~~~~p~I~L~ia~svl~~lsp~lr~~D~ 506 (1158)
T KOG2968|consen 462 RSDTRVLFISRSDLERFLDAEPLIYLRIAHSVLRRLSPFLRKLDF 506 (1158)
T ss_pred ecceEEEEeeHHHHHHHHHhCceEEEehhhHHHHhcCHHHhhhhh
Confidence 999999999999999999999944433333333455555554443
No 26
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.59 E-value=0.037 Score=54.71 Aligned_cols=98 Identities=7% Similarity=0.064 Sum_probs=72.4
Q ss_pred cccEEEEecCCCeE-EeecccccCeEEEEEeceEEEEe-CCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEE
Q psy709 187 QVIKTQTLQPGEAY-AVQNITRTDRLALLLTGKAYVAQ-DKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRI 264 (508)
Q Consensus 187 ~~a~vr~lkKGe~l-a~EGktp~d~L~lLLSGrVrVs~-dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrV 264 (508)
..++.+++++|..+ ..+...+ +..+++++|.+.+.. ||-.+.....-..+|=.+-.+ .+.....+.|+++|++
T Consensus 20 ~~g~~~~~~~~~~~i~~~~~~~-~~~~ll~~G~vsirr~d~ll~~t~~aP~IlGl~~~~~----~~~~~~~l~ae~~c~~ 94 (207)
T PRK11832 20 RYGTRFEFNNEKQVIFSSDVNN-EDTFVILEGVISLRREENVLIGITQAPYIMGLADGLM----KNDIPYKLISEGNCTG 94 (207)
T ss_pred ccCCeEecCCCcEEeccccCCC-ceEEEEEeceEEEEecCCeEEEeccCCeEeecccccC----CCCceEEEEEcCccEE
Confidence 36889999999997 5443223 679999999999955 344455555555666544333 2222467999999999
Q ss_pred EEEehHHHHHHHhcchHHHHHHHHH
Q psy709 265 MYWQRSTLEYLFVKETYLANVMTVL 289 (508)
Q Consensus 265 L~w~Re~L~~Ll~k~P~L~~lf~~l 289 (508)
..+++++..+..+++..|..+.+-+
T Consensus 95 ~~i~~~~~~~iie~~~LW~~~~~~l 119 (207)
T PRK11832 95 YHLPAKQTITLIEQNQLWRDAFYWL 119 (207)
T ss_pred EEeeHHHHHHHHHHhchHHHHHHHH
Confidence 9999999999999999888877733
No 27
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=92.66 E-value=0.47 Score=37.12 Aligned_cols=68 Identities=16% Similarity=0.227 Sum_probs=47.9
Q ss_pred EEEecCCCeEEeecccccC-eEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEE
Q psy709 191 TQTLQPGEAYAVQNITRTD-RLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYW 267 (508)
Q Consensus 191 vr~lkKGe~la~EGktp~d-~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w 267 (508)
+.++++|+..-..- .+.+ .+.++++|++++..+|+. ..++|||.+--+.-. ...+.-...++|+++.+
T Consensus 2 ~~~~~pG~~~~~h~-H~~~~e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~i~~~~-------~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 2 LVTLPPGGSIPPHR-HPGEDEFFYVLSGEGTLTVDGER-VELKPGDAIYIPPGV-------PHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEEETTEEEEEEE-ESSEEEEEEEEESEEEEEETTEE-EEEETTEEEEEETTS-------EEEEEEESSSEEEEEEE
T ss_pred EEEECCCCCCCCEE-CCCCCEEEEEEECCEEEEEccEE-eEccCCEEEEECCCC-------eEEEEECCCCCEEEEEE
Confidence 46788999777776 4545 899999999999988884 478999877543332 33344444567777654
No 28
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=91.20 E-value=0.49 Score=47.75 Aligned_cols=73 Identities=21% Similarity=0.237 Sum_probs=54.3
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeeccccccc-ccc------cCCceeEEEEEecc
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFES-RAN------SENKFKVSIIAHTT 261 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s-~ps------s~~~fqVTI~A~Ed 261 (508)
.++.+|++|+.+..+- +..++..++++|+++|+.+|++++.|+.- ++.|. .|. .+. .++++|.++
T Consensus 31 F~~~~L~~Ges~~~~~-~~~E~clV~v~Gk~~vs~~g~~f~~iG~R-----~SvFe~~p~~~vYvp~g~--~~~vtA~t~ 102 (270)
T COG3718 31 FRLLRLAAGESATEET-GDRERCLVLVTGKATVSAHGSTFGEIGTR-----MSVFERKPPDSVYVPAGS--AFSVTATTD 102 (270)
T ss_pred EEEEEccCCCcccccC-CCceEEEEEEeeeEEEeeccchHhhcccc-----cccccCCCCCeEEecCCc--eEEEEeecc
Confidence 4677899999999987 45589999999999999999999877632 44444 221 122 356889999
Q ss_pred EEEEEEeh
Q psy709 262 CRIMYWQR 269 (508)
Q Consensus 262 crVL~w~R 269 (508)
+++-+=+.
T Consensus 103 ~~vAvC~A 110 (270)
T COG3718 103 LEVAVCSA 110 (270)
T ss_pred eEEEEEeC
Confidence 98876543
No 29
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=84.44 E-value=2.8 Score=42.86 Aligned_cols=79 Identities=22% Similarity=0.232 Sum_probs=54.2
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCC-EEEeecCCCCeeccccccc-ccccCCceeEEEEEeccEEEEE
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDK-QYLHPIATGEFLDSPEFES-RANSENKFKVSIIAHTTCRIMY 266 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg-~~Lh~I~PGqFfGE~e~~s-~pss~~~fqVTI~A~EdcrVL~ 266 (508)
....++++|+.+..+- +.-|..-++++|+++|..+| ..-..-+..+.|+++...- .|... .++++|.++|++..
T Consensus 29 ~~~l~L~~g~~~~~~~-~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~---~~~i~a~~~ae~~~ 104 (261)
T PF04962_consen 29 FGVLRLEAGESLEFEL-ERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGT---KVVIFASTDAEFAV 104 (261)
T ss_dssp CCCEEEECCHCCCCCC-CSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT-----EEEEESSTEEEEE
T ss_pred eEEEEecCCCEEeccC-CCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCC---eEEEEEcCCCEEEE
Confidence 4568899999998775 33477888999999999998 5555555567777744443 33332 37799999999998
Q ss_pred EehHH
Q psy709 267 WQRST 271 (508)
Q Consensus 267 w~Re~ 271 (508)
.+-..
T Consensus 105 ~sapa 109 (261)
T PF04962_consen 105 CSAPA 109 (261)
T ss_dssp EEEE-
T ss_pred Ecccc
Confidence 76543
No 30
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=79.80 E-value=5.1 Score=36.06 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=43.2
Q ss_pred cccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccc
Q psy709 187 QVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPE 241 (508)
Q Consensus 187 ~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e 241 (508)
...+...+++|+-+..+-....|..++|++|+.+|..+|+.+ .+++||.+-=|.
T Consensus 36 ~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~~~-~v~~gd~~~iP~ 89 (127)
T COG0662 36 YSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGEEV-EVKAGDSVYIPA 89 (127)
T ss_pred EEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCEEE-EecCCCEEEECC
Confidence 456788899999986665344689999999999999999887 588898876543
No 31
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=76.57 E-value=12 Score=34.10 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=42.9
Q ss_pred EEEecCCCeEEeecccccCeEEEEEeceEEEE-eC-CEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEe
Q psy709 191 TQTLQPGEAYAVQNITRTDRLALLLTGKAYVA-QD-KQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQ 268 (508)
Q Consensus 191 vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs-~d-g~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~ 268 (508)
..++++|+..-..- ...+...+|++|++++. .+ |+. +.++|||.+-=++=. ... +.+.+++++++.-
T Consensus 39 ~~~l~pG~~~~~h~-h~~~E~~yVL~G~~~~~~i~~g~~-~~L~aGD~i~~~~~~-------~H~--~~N~e~~~~l~v~ 107 (125)
T PRK13290 39 ETTIYAGTETHLHY-KNHLEAVYCIEGEGEVEDLATGEV-HPIRPGTMYALDKHD-------RHY--LRAGEDMRLVCVF 107 (125)
T ss_pred EEEECCCCccccee-CCCEEEEEEEeCEEEEEEcCCCEE-EEeCCCeEEEECCCC-------cEE--EEcCCCEEEEEEE
Confidence 35789998554332 12246899999999999 55 555 679999876522211 111 3334888887764
No 32
>PRK11171 hypothetical protein; Provisional
Probab=70.07 E-value=19 Score=36.71 Aligned_cols=72 Identities=10% Similarity=0.224 Sum_probs=47.8
Q ss_pred cEEEEecCCCeEEeeccc-ccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEE
Q psy709 189 IKTQTLQPGEAYAVQNIT-RTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYW 267 (508)
Q Consensus 189 a~vr~lkKGe~la~EGkt-p~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w 267 (508)
....++++|+........ ..+++.+|++|++++..+|+. +.+.+||.+-=+.-. .....-...++|+++.+
T Consensus 63 ~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~~-~~L~~GDsi~~p~~~-------~H~~~N~g~~~a~~l~v 134 (266)
T PRK11171 63 QYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGKT-HALSEGGYAYLPPGS-------DWTLRNAGAEDARFHWI 134 (266)
T ss_pred EEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCEE-EEECCCCEEEECCCC-------CEEEEECCCCCEEEEEE
Confidence 345678888765444322 247899999999999998875 579999877532222 22222233678888887
Q ss_pred e
Q psy709 268 Q 268 (508)
Q Consensus 268 ~ 268 (508)
.
T Consensus 135 ~ 135 (266)
T PRK11171 135 R 135 (266)
T ss_pred E
Confidence 5
No 33
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=68.61 E-value=19 Score=36.63 Aligned_cols=73 Identities=12% Similarity=0.273 Sum_probs=45.2
Q ss_pred cEEEEecCCCeEEeecccc-cCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEE
Q psy709 189 IKTQTLQPGEAYAVQNITR-TDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYW 267 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp-~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w 267 (508)
....++++|.-.......+ .+++.+|++|++++..+|+. +.+.+||.+-=++= ......-...++++++..
T Consensus 60 ~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~~-~~L~~Gd~~y~pa~-------~~H~~~N~~~~~a~~l~v 131 (260)
T TIGR03214 60 QYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGET-HELREGGYAYLPPG-------SKWTLANAQAEDARFFLY 131 (260)
T ss_pred EEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCEE-EEECCCCEEEECCC-------CCEEEEECCCCCEEEEEE
Confidence 3466778875432221122 37899999999999988876 48999987753221 122222233567887765
Q ss_pred eh
Q psy709 268 QR 269 (508)
Q Consensus 268 ~R 269 (508)
.|
T Consensus 132 ~k 133 (260)
T TIGR03214 132 KK 133 (260)
T ss_pred Ee
Confidence 53
No 34
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=68.53 E-value=23 Score=32.32 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=49.8
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCC-----EEEeecCCCCeecccccccccccCCceeEEEEEeccEE
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDK-----QYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCR 263 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg-----~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~Edcr 263 (508)
....++++|......-....+.+++|++|+.++..++ +..+.+.+||.+--+.-.. ........++++
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~-------H~~~n~~~~~~~ 104 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHP-------HFQVNSGDENLE 104 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCE-------EEEEcCCCCCEE
Confidence 5566789999876554222578999999999998744 3578899999887544332 111122246777
Q ss_pred EEEEehHH
Q psy709 264 IMYWQRST 271 (508)
Q Consensus 264 VL~w~Re~ 271 (508)
++.++-.+
T Consensus 105 ~l~~~~~~ 112 (146)
T smart00835 105 FVAFNTND 112 (146)
T ss_pred EEEEecCC
Confidence 77664443
No 35
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=66.20 E-value=28 Score=33.03 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=43.1
Q ss_pred EEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEe
Q psy709 192 QTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQ 268 (508)
Q Consensus 192 r~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~ 268 (508)
.++++|......-..+.+.+.+|++|++.+..+|+. +.+++||.+-= -+ +..........++|+++.+.
T Consensus 112 ~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~~~-~~l~~Gd~~~~---~~----~~~H~~~n~~~~~~~~l~~~ 180 (185)
T PRK09943 112 ETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQD-YHLVAGQSYAI---NT----GIPHSFSNTSAGICRIISAH 180 (185)
T ss_pred EEccCCCCcccccccCCcEEEEEEEeEEEEEECCEE-EEecCCCEEEE---cC----CCCeeeeCCCCCCeEEEEEe
Confidence 356777754322223457899999999999998866 47999987642 11 11111222345677777664
No 36
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=61.29 E-value=17 Score=32.42 Aligned_cols=51 Identities=16% Similarity=0.324 Sum_probs=41.9
Q ss_pred cEEEEecCCCeEEeecccc-cCeEEEEEeceEEEEeCCEEEeecCCCCeecccc
Q psy709 189 IKTQTLQPGEAYAVQNITR-TDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPE 241 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp-~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e 241 (508)
....+++||+.+-.-- -| .+...++++|+++++.+|+. ..+.+||++-.|.
T Consensus 45 ~~~v~~~~G~~~~~H~-hp~~~~~~~Vl~G~~~~~~~g~~-~~l~~Gd~i~ip~ 96 (131)
T COG1917 45 VVLVTFEPGAVIPWHT-HPLGEQTIYVLEGEGTVQLEGEK-KELKAGDVIIIPP 96 (131)
T ss_pred EEEEEECCCccccccc-CCCcceEEEEEecEEEEEecCCc-eEecCCCEEEECC
Confidence 5577899999998887 55 67999999999999999544 4689999997643
No 37
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=60.62 E-value=10 Score=31.18 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=29.2
Q ss_pred ecCCCeEEeecccccCeEEEEEeceEEEEeC-CEEEeecCCCCeec
Q psy709 194 LQPGEAYAVQNITRTDRLALLLTGKAYVAQD-KQYLHPIATGEFLD 238 (508)
Q Consensus 194 lkKGe~la~EGktp~d~L~lLLSGrVrVs~d-g~~Lh~I~PGqFfG 238 (508)
-++|..=..-. . ++..+|++|+++++.+ |.. +.+.|||.+=
T Consensus 14 ~~pg~~~~~~~--~-~E~~~vleG~v~it~~~G~~-~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYP--E-DEFFYVLEGEVTITDEDGET-VTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEES--S-EEEEEEEEEEEEEEETTTEE-EEEETTEEEE
T ss_pred ECCceeEeeCC--C-CEEEEEEEeEEEEEECCCCE-EEEcCCcEEE
Confidence 35565333322 3 8899999999999994 455 6799998774
No 38
>PRK11171 hypothetical protein; Provisional
Probab=57.47 E-value=56 Score=33.30 Aligned_cols=49 Identities=16% Similarity=0.350 Sum_probs=39.5
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeec
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLD 238 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfG 238 (508)
....++++|..+-.+.....++..+|++|+..+..+|+. +.+.+||.+-
T Consensus 186 ~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~~~-~~l~~GD~i~ 234 (266)
T PRK11171 186 VNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNNDW-VEVEAGDFIW 234 (266)
T ss_pred EEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECCEE-EEeCCCCEEE
Confidence 456889999999886435568999999999999876655 4799998875
No 39
>KOG3542|consensus
Probab=51.92 E-value=33 Score=39.86 Aligned_cols=76 Identities=12% Similarity=0.205 Sum_probs=51.3
Q ss_pred cCCCeEEeecccccCeEEEEEeceEEEEe-CCEEEeecCCCCeec-ccccccccccCCceeEEEEEeccEEEEEEehHHH
Q psy709 195 QPGEAYAVQNITRTDRLALLLTGKAYVAQ-DKQYLHPIATGEFLD-SPEFESRANSENKFKVSIIAHTTCRIMYWQRSTL 272 (508)
Q Consensus 195 kKGe~la~EGktp~d~L~lLLSGrVrVs~-dg~~Lh~I~PGqFfG-E~e~~s~pss~~~fqVTI~A~EdcrVL~w~Re~L 272 (508)
.+|.++...| +..|+-+.|++|.|+|.+ +|+... +.-|+-|| ||.... ....-.-=+-++||..+++...+.
T Consensus 311 ~AGtivL~dg-eeLDSWsVIlNG~VEv~~PdGk~e~-l~mGnSFG~~PT~dk----qym~G~mRTkVDDCqFVciaqqDy 384 (1283)
T KOG3542|consen 311 DAGTIVLADG-EELDSWSVILNGCVEVVKPDGKREE-LKMGNSFGAEPTPDK----QYMIGEMRTKVDDCQFVCIAQQDY 384 (1283)
T ss_pred hcCeEEecCC-cccceeEEEecceEEEecCCCceEE-eecccccCCCCCcch----hhhhhhhheecccceEEEeehhhH
Confidence 5788888889 678999999999999988 665443 33355555 344333 111112235688999999988776
Q ss_pred HHHH
Q psy709 273 EYLF 276 (508)
Q Consensus 273 ~~Ll 276 (508)
-+.+
T Consensus 385 crIl 388 (1283)
T KOG3542|consen 385 CRIL 388 (1283)
T ss_pred HHHH
Confidence 5544
No 40
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=48.70 E-value=66 Score=27.89 Aligned_cols=70 Identities=16% Similarity=0.368 Sum_probs=43.6
Q ss_pred EEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEe-ccEEEEEEehH
Q psy709 192 QTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAH-TTCRIMYWQRS 270 (508)
Q Consensus 192 r~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~-EdcrVL~w~Re 270 (508)
.++++|..+...-...-+.+-++++|.++|.-+. ..+.+++.+- ++ .++ .++++|. +++|++.+.=+
T Consensus 4 i~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~~~~---~~~~~~~~~~----l~---~g~--~i~~~a~~~~a~~lll~Ge 71 (104)
T PF05726_consen 4 IKLEPGASFTLPLPPGHNAFIYVLEGSVEVGGEE---DPLEAGQLVV----LE---DGD--EIELTAGEEGARFLLLGGE 71 (104)
T ss_dssp EEE-TT-EEEEEEETT-EEEEEEEESEEEETTTT---EEEETTEEEE----E----SEC--EEEEEESSSSEEEEEEEE-
T ss_pred EEECCCCEEEeecCCCCEEEEEEEECcEEECCCc---ceECCCcEEE----EC---CCc--eEEEEECCCCcEEEEEEcc
Confidence 4688898887663233578999999998885544 4455665443 22 123 4668888 99999999999
Q ss_pred HHH
Q psy709 271 TLE 273 (508)
Q Consensus 271 ~L~ 273 (508)
-|.
T Consensus 72 Pl~ 74 (104)
T PF05726_consen 72 PLN 74 (104)
T ss_dssp ---
T ss_pred CCC
Confidence 888
No 41
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=44.56 E-value=84 Score=26.34 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=41.5
Q ss_pred ccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEE
Q psy709 188 VIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMY 266 (508)
Q Consensus 188 ~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~ 266 (508)
.....++++|..+-... -+...-.+|++|...-. ++. ..+|+++=+|.=.. -+.++.++|.++.
T Consensus 25 ~~~L~r~~pG~~~p~H~-H~g~ee~~VLeG~~~d~-~~~----~~~G~~~~~p~g~~---------h~~~s~~gc~~~v 88 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHR-HPGGEEILVLEGELSDG-DGR----YGAGDWLRLPPGSS---------HTPRSDEGCLILV 88 (91)
T ss_dssp EEEEEEE-TTEEEEEEE-ESS-EEEEEEECEEEET-TCE----EETTEEEEE-TTEE---------EEEEESSCEEEEE
T ss_pred EEEEEEECCCCCcCccC-CCCcEEEEEEEEEEEEC-Ccc----CCCCeEEEeCCCCc---------cccCcCCCEEEEE
Confidence 45677899999888866 34466779999999842 332 27888876553332 1355678898875
No 42
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=40.11 E-value=1.5e+02 Score=27.55 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=40.6
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCE--EEeecCCCCeeccccccc-ccccCC
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQ--YLHPIATGEFLDSPEFES-RANSEN 250 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~--~Lh~I~PGqFfGE~e~~s-~pss~~ 250 (508)
....+..+|..--.-=....+..-+++||++++.+.++ .-...+|||||-=|...- +|...+
T Consensus 48 ~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S 112 (142)
T COG4101 48 MHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPANLS 112 (142)
T ss_pred EEEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCcccccC
Confidence 45566666643211111124678899999999999764 334569999999887777 654444
No 43
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=39.63 E-value=51 Score=31.33 Aligned_cols=76 Identities=20% Similarity=0.383 Sum_probs=54.7
Q ss_pred ccccchhHHHHHHHHHHHHHhhCCCCCcchhhhHHhhhhccccCCCCCCCCcccccCCCcccccccccccceeeecchhh
Q psy709 45 NWKEFQHWLFNTAHLFFFISYALPTNRYGLICMHTFLIVGKCQAGTWPGALSCAYIPCPMYYVFYSFSSGFSFLSSWAWR 124 (508)
Q Consensus 45 ~w~~~~~~lfhlA~~~~~lsyl~~~~~~~~l~Lr~~l~~G~~~a~~~~~~~s~~~~~~~~yy~~~~~~~g~~~~~LW~~~ 124 (508)
+|+..-.++--+|.++...|....++ .-+|..+.+|. +.. +.|.+.+|. |+
T Consensus 88 ~~~g~~~~l~~~as~~~t~a~f~~~~----~~mR~~~l~~~-----------~~w-------~~~n~~igS-----~~-- 138 (163)
T PF10688_consen 88 TWQGWIELLPYAASVLGTIALFMLDG----IKMRILMLVGT-----------LCW-------LIYNILIGS-----WG-- 138 (163)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcCc----hhHHHHHHHHH-----------HHH-------HHHHHHHcC-----HH--
Confidence 45555567778999999999998866 88999999991 111 112223333 43
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHhhCC
Q psy709 125 VACAPDIFIWNLFFISINLFQLIYVLYQSRP 155 (508)
Q Consensus 125 ~~c~~D~~~Wn~lf~~iNlv~l~~L~y~~r~ 155 (508)
...=+.+++.+|++.+..+..++++
T Consensus 139 ------g~l~e~~~~~~n~~~i~R~~~~~~~ 163 (163)
T PF10688_consen 139 ------GTLMEALFIISNLITIYRLYRTKKR 163 (163)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6677999999999999999887654
No 44
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=38.83 E-value=91 Score=33.27 Aligned_cols=74 Identities=12% Similarity=0.177 Sum_probs=53.6
Q ss_pred EEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEehH
Q psy709 191 TQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQRS 270 (508)
Q Consensus 191 vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~Re 270 (508)
.+.+++|+.-..-- .....++.|++|+-++..+|+.+ ..++||+|-=|+|-. ++..+.+++.++..+..
T Consensus 254 ~q~L~~G~~t~~~r-~T~s~Vf~VieG~G~s~ig~~~~-~W~~gD~f~vPsW~~---------~~h~a~~da~Lf~~~D~ 322 (335)
T TIGR02272 254 IQLLPKGFRTATYR-STDATVFCVVEGRGQVRIGDAVF-RFSPKDVFVVPSWHP---------VRFEASDDAVLFSFSDR 322 (335)
T ss_pred HhccCCCCCCCCcc-ccccEEEEEEeCeEEEEECCEEE-EecCCCEEEECCCCc---------EecccCCCeEEEEecCH
Confidence 35566665554444 23478999999999999999887 588999999899854 12445678888888777
Q ss_pred HHHHH
Q psy709 271 TLEYL 275 (508)
Q Consensus 271 ~L~~L 275 (508)
-+.+-
T Consensus 323 Pll~~ 327 (335)
T TIGR02272 323 PVQQK 327 (335)
T ss_pred HHHHH
Confidence 66543
No 45
>PHA00672 hypothetical protein
Probab=37.34 E-value=73 Score=29.80 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=49.8
Q ss_pred cccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEE
Q psy709 187 QVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMY 266 (508)
Q Consensus 187 ~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~ 266 (508)
-.++..+.+||..++-.= ...+.+ ++.||.+.|+.||.....-+++-+.+++.=-. | -.|-+|+....
T Consensus 47 vYARei~IPkGt~LtG~~-hkf~~~-ii~sG~itV~tdge~~rl~g~~~i~~~aG~Kr---------a-gyAHeDT~wt~ 114 (152)
T PHA00672 47 VYARTIRIPAGVALTGAL-IKVSTV-LIFSGHATVFIGGEAVELRGYHVIPASAGRKQ---------A-FVAHADTDLTM 114 (152)
T ss_pred eeEEEEeccCceeeeeee-eEeeEE-EEecccEEEEeCCcEEEEecceeeecCCCccc---------c-eeeeccceEEE
Confidence 467888899999888655 456888 99999999999998777666665554333222 1 24566666666
Q ss_pred EehH
Q psy709 267 WQRS 270 (508)
Q Consensus 267 w~Re 270 (508)
+.-.
T Consensus 115 ~h~s 118 (152)
T PHA00672 115 LFPS 118 (152)
T ss_pred Eecc
Confidence 5543
No 46
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=34.28 E-value=83 Score=30.22 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=38.2
Q ss_pred cCeEEEEEeceEEEEe--CCE-EEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEehHHH
Q psy709 208 TDRLALLLTGKAYVAQ--DKQ-YLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQRSTL 272 (508)
Q Consensus 208 ~d~L~lLLSGrVrVs~--dg~-~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~Re~L 272 (508)
.|.++++++|.+++.. +|+ ..-.+++||++==|.=.. . +-++.++|..+++.|++-
T Consensus 48 tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvp-----H----sP~r~~~t~~LvIE~~r~ 106 (159)
T TIGR03037 48 GEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVP-----H----SPQRPAGSIGLVIERKRP 106 (159)
T ss_pred CceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCC-----c----ccccCCCcEEEEEEeCCC
Confidence 5899999999999955 332 234689998876443333 1 133456888888887754
No 47
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=33.58 E-value=1.1e+02 Score=29.88 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=38.8
Q ss_pred ccCeEEEEEeceEEEEe--CCE-EEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEehHHH
Q psy709 207 RTDRLALLLTGKAYVAQ--DKQ-YLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQRSTL 272 (508)
Q Consensus 207 p~d~L~lLLSGrVrVs~--dg~-~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~Re~L 272 (508)
+.|.++++++|.+++.. +|+ .--.+++||++==|.=.. -. -++.++|..+++.|++-
T Consensus 53 ~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvp----Hs-----P~r~~~tv~LviE~~r~ 112 (177)
T PRK13264 53 PGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVP----HS-----PQREAGSIGLVIERKRP 112 (177)
T ss_pred CCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCC----cC-----CccCCCeEEEEEEeCCC
Confidence 46899999999999988 553 234689998876443332 11 23457888888877654
No 48
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=32.87 E-value=1.2e+02 Score=28.54 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=37.5
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeec
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLD 238 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfG 238 (508)
.+..++++|+.+..+-...-+..-.|++|.++|+.+|+.. .+.+||-+-
T Consensus 65 vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~~~-~~~~g~sv~ 113 (151)
T PF01050_consen 65 VKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDEEF-TLKEGDSVY 113 (151)
T ss_pred EEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCEEE-EEcCCCEEE
Confidence 4566689999998885344467899999999999988766 467776653
No 49
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=31.18 E-value=1.8e+02 Score=31.31 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=47.5
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeC---C-EEEeecCCCCeecccccccccccCCceeEEEEEeccEEE
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQD---K-QYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRI 264 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~d---g-~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrV 264 (508)
+...++++|+..-.-=....++++++++|++++... | .....+++||.+-=|.=.. ....-+-.|++++
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~-------H~i~N~G~e~l~f 319 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMG-------HYVENTGDETLVF 319 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCe-------EEEEECCCCCEEE
Confidence 567778899876544422257999999999999872 2 3446799998775433111 1111222568888
Q ss_pred EEEehH
Q psy709 265 MYWQRS 270 (508)
Q Consensus 265 L~w~Re 270 (508)
+++=++
T Consensus 320 L~if~s 325 (367)
T TIGR03404 320 LEVFKA 325 (367)
T ss_pred EEEECC
Confidence 887433
No 50
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=30.44 E-value=2e+02 Score=32.09 Aligned_cols=48 Identities=25% Similarity=0.290 Sum_probs=34.4
Q ss_pred EEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeec
Q psy709 190 KTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLD 238 (508)
Q Consensus 190 ~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfG 238 (508)
...++++|...-.+-....++..+|++|++++..+|+.. .++|||.+-
T Consensus 388 ~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~~~-~L~~GDSi~ 435 (478)
T PRK15460 388 KRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIK-LLGENESIY 435 (478)
T ss_pred EEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCEEE-EecCCCEEE
Confidence 455688887543332122357888999999999999875 789998764
No 51
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=28.35 E-value=2.5e+02 Score=28.71 Aligned_cols=71 Identities=8% Similarity=0.195 Sum_probs=47.1
Q ss_pred EEEecCCC-eEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEeh
Q psy709 191 TQTLQPGE-AYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQR 269 (508)
Q Consensus 191 vr~lkKGe-~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~R 269 (508)
+.++++|. .=.-|+....+++-||+||.+.|..+|++- .+.+|.+.=- |. ++.++++=.+.+|+|+-.++|
T Consensus 65 ive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~th-~l~eggyayl------Pp-gs~~~~~N~~~~~~rfhw~rk 136 (264)
T COG3257 65 IVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGKTH-ALREGGYAYL------PP-GSGWTLRNAQKEDSRFHWIRK 136 (264)
T ss_pred eEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCeEE-EeccCCeEEe------CC-CCcceEeeccCCceEEEEEee
Confidence 34554332 334445244789999999999999999875 5788876532 21 334555566788999876654
No 52
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=28.24 E-value=2.4e+02 Score=31.12 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=33.7
Q ss_pred EEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecc
Q psy709 190 KTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDS 239 (508)
Q Consensus 190 ~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE 239 (508)
...++++|...-..-....+...+|++|++++..+|+.. .++|||.+-=
T Consensus 379 ~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~~~-~l~~GDsi~i 427 (468)
T TIGR01479 379 KRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDETL-LLTENESTYI 427 (468)
T ss_pred EEEEECCCCccCccccCCCceEEEEEeeEEEEEECCEEE-EecCCCEEEE
Confidence 445678887543211111245669999999999999875 7999987653
No 53
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=25.99 E-value=1.5e+02 Score=30.07 Aligned_cols=52 Identities=15% Similarity=0.401 Sum_probs=38.8
Q ss_pred ccEEEEecCCCeEE-eecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccc
Q psy709 188 VIKTQTLQPGEAYA-VQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPE 241 (508)
Q Consensus 188 ~a~vr~lkKGe~la-~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e 241 (508)
...+.++++|..+- .+- ...++..+|++|+..+.-||+.. .+++||++==+.
T Consensus 180 ~~~~~~~~PG~~~~~~~~-H~~eh~~yiL~G~G~~~~~g~~~-~V~~GD~i~i~~ 232 (260)
T TIGR03214 180 NVHILSFEPGASHPYIET-HVMEHGLYVLEGKGVYNLDNNWV-PVEAGDYIWMGA 232 (260)
T ss_pred EEEEEEECCCcccCCccc-ccceeEEEEEeceEEEEECCEEE-EecCCCEEEECC
Confidence 46679999999995 233 23467889999999998776655 689999875333
No 54
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=24.63 E-value=1.2e+02 Score=25.52 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=22.1
Q ss_pred ccCeEEEEEeceEEEEeCCEEEeecCCCCeec
Q psy709 207 RTDRLALLLTGKAYVAQDKQYLHPIATGEFLD 238 (508)
Q Consensus 207 p~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfG 238 (508)
+.=.+.++++|...+..+|+.. .++||+++=
T Consensus 22 ~~~~i~~v~~G~~~~~~~~~~~-~l~~g~~~l 52 (136)
T PF02311_consen 22 DFYEIIYVLSGEGTLHIDGQEY-PLKPGDLFL 52 (136)
T ss_dssp -SEEEEEEEEE-EEEEETTEEE-EE-TT-EEE
T ss_pred CCEEEEEEeCCEEEEEECCEEE-EEECCEEEE
Confidence 3357999999999999988775 588888773
No 55
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=24.23 E-value=97 Score=29.89 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=25.4
Q ss_pred cCeEEEEEeceEEEEeCCEEEeecCCCCeec
Q psy709 208 TDRLALLLTGKAYVAQDKQYLHPIATGEFLD 238 (508)
Q Consensus 208 ~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfG 238 (508)
.|.+-+|++||..|..+|.++ .-+|||.+=
T Consensus 118 yDe~d~VlEGrL~V~~~g~tv-~a~aGDvif 147 (176)
T COG4766 118 YDEIDYVLEGRLHVRIDGRTV-IAGAGDVIF 147 (176)
T ss_pred ccceeEEEeeeEEEEEcCCeE-ecCCCcEEE
Confidence 467889999999999999888 578888764
No 56
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=23.18 E-value=1.2e+02 Score=30.91 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=24.9
Q ss_pred CeEEEEEeceEEEEeCCEEEeecCCCCeec
Q psy709 209 DRLALLLTGKAYVAQDKQYLHPIATGEFLD 238 (508)
Q Consensus 209 d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfG 238 (508)
+.+.++++|++++..+|+.. .++|||++=
T Consensus 176 dEi~YVLEGe~~l~IdG~t~-~l~pGDvlf 204 (233)
T PRK15457 176 DEIDMVLEGELHVRHEGETM-IAKAGDVMF 204 (233)
T ss_pred eEEEEEEEeEEEEEECCEEE-EeCCCcEEE
Confidence 67899999999999998776 689998774
No 57
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=22.26 E-value=1.9e+02 Score=28.66 Aligned_cols=72 Identities=14% Similarity=0.233 Sum_probs=47.2
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEe
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQ 268 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~ 268 (508)
.....+++|..+-... .....+.+|++|..+ |+.- ...+|+++-.+.-.. .+.++...++|..+..-
T Consensus 129 v~Ll~i~pG~~~p~H~-H~G~E~tlVLeG~f~---de~g--~y~~Gd~i~~p~~~~-------H~p~a~~~~~Cicl~v~ 195 (215)
T TIGR02451 129 VRLLYIEAGQSIPQHT-HKGFELTLVLHGAFS---DETG--VYGVGDFEEADGSVQ-------HQPRTVSGGDCLCLAVL 195 (215)
T ss_pred EEEEEECCCCccCCCc-CCCcEEEEEEEEEEE---cCCC--ccCCCeEEECCCCCC-------cCcccCCCCCeEEEEEe
Confidence 4466788888887777 355678899999964 3332 357788876544333 33333445779999988
Q ss_pred hHHHH
Q psy709 269 RSTLE 273 (508)
Q Consensus 269 Re~L~ 273 (508)
...|+
T Consensus 196 dapl~ 200 (215)
T TIGR02451 196 DAPLR 200 (215)
T ss_pred cCCcc
Confidence 77764
No 58
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=22.00 E-value=1.9e+02 Score=30.99 Aligned_cols=49 Identities=14% Similarity=0.290 Sum_probs=35.4
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CCEE-EeecCCCCeec
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DKQY-LHPIATGEFLD 238 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg~~-Lh~I~PGqFfG 238 (508)
+...++++|...-.-- ...+++.++++|+++|.. +|+. ...+++||.+-
T Consensus 69 ~~~~~l~pG~~~~~Hw-H~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~ 121 (367)
T TIGR03404 69 GVNMRLEPGAIRELHW-HKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWY 121 (367)
T ss_pred ceEEEEcCCCCCCccc-CCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEE
Confidence 5667889998654332 234679999999999988 3443 35799998775
No 59
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=21.92 E-value=1.2e+02 Score=28.96 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=33.1
Q ss_pred cCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEE
Q psy709 208 TDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYW 267 (508)
Q Consensus 208 ~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w 267 (508)
-|++-+|++|+..+..+|++.+ -+|||.+= +- . +. .++....+.+|.+..
T Consensus 95 YDEi~~VlEG~L~i~~~G~~~~-A~~GDvi~----iP--k-Gs--~I~fst~~~a~~~Yv 144 (152)
T PF06249_consen 95 YDEIKYVLEGTLEISIDGQTVT-AKPGDVIF----IP--K-GS--TITFSTPDYARFFYV 144 (152)
T ss_dssp SEEEEEEEEEEEEEEETTEEEE-EETT-EEE----E---T-T---EEEEEEEEEEEEEEE
T ss_pred cceEEEEEEeEEEEEECCEEEE-EcCCcEEE----EC--C-CC--EEEEecCCCEEEEEE
Confidence 5899999999999999999884 78887663 32 1 11 344455556665543
No 60
>COG3462 Predicted membrane protein [Function unknown]
Probab=21.79 E-value=2.4e+02 Score=25.81 Aligned_cols=55 Identities=9% Similarity=0.232 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCCC------ChhHHHHHHhhcCCCCCCHHHHHHHhc
Q psy709 130 DIFIWNLFFISINLFQLIYVLYQSRPVKF------DPDFEEVYTNLFEPFKVSRLQFKKLVN 185 (508)
Q Consensus 130 D~~~Wn~lf~~iNlv~l~~L~y~~r~v~f------~~E~~~lY~~lF~pL~LS~eqf~~Ll~ 185 (508)
-++.|-++++++=+.....+-..+++-.- |..+ ++-+.=|..-.+|+||++++.+
T Consensus 53 mpI~~~vvli~lvvfm~~~~g~~r~~~~~d~~e~~sRA~-eIlkER~AkGEItEEEY~r~~~ 113 (117)
T COG3462 53 MPIFWAVVLIFLVVFMFYILGAVRRGSDDDDAERGSRAE-EILKERYAKGEITEEEYRRIIR 113 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhcccccccHHH-HHHHHHHhcCCCCHHHHHHHHH
Confidence 37888888877766655555555555432 3333 4444458888999999999874
No 61
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=20.98 E-value=3e+02 Score=23.57 Aligned_cols=70 Identities=16% Similarity=0.310 Sum_probs=38.5
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEE
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMY 266 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~ 266 (508)
+-..++++|..==.+......-.++|++|+++|+-++.... +.+|+.+-=|. ++.|.-.=.-.+++++.+
T Consensus 14 ~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~~f~-v~~G~~F~VP~-------gN~Y~i~N~~~~~a~LfF 83 (85)
T PF11699_consen 14 SGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHETSFV-VTKGGSFQVPR-------GNYYSIKNIGNEEAKLFF 83 (85)
T ss_dssp EEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTEEEE-EETT-EEEE-T-------T-EEEEEE-SSS-EEEEE
T ss_pred eEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCcEEE-EeCCCEEEECC-------CCEEEEEECCCCcEEEEE
Confidence 44566666654333331222468899999999999987773 77887775433 233333222255666554
No 62
>PF15652 Tox-SHH: HNH/Endo VII superfamily toxin with a SHH signature
Probab=20.91 E-value=30 Score=30.81 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=20.1
Q ss_pred CCChhHHHHHHhccccCCCCcccc
Q psy709 484 KFDPDFEEVYTNLFEPFKVSSDRR 507 (508)
Q Consensus 484 ~~~~e~~~lY~~~f~pl~v~~~~~ 507 (508)
.+.+||+.+|+.||. -+||+++|
T Consensus 66 ~~~~Ef~~~~~eM~d-AGV~~~~~ 88 (100)
T PF15652_consen 66 TLQEEFNNSYREMFD-AGVSKECR 88 (100)
T ss_pred hHHHHHHHHHHHHHH-cCCCHHHH
Confidence 356899999999999 99999765
No 63
>PF13074 DUF3938: Protein of unknown function (DUF3938)
Probab=20.27 E-value=56 Score=28.00 Aligned_cols=18 Identities=39% Similarity=1.018 Sum_probs=12.1
Q ss_pred hhhhhhhhhhhh-chhhHH
Q psy709 442 FSFLSSWAWRVA-CAPDIF 459 (508)
Q Consensus 442 ~~~~~lw~~~~~-C~~d~~ 459 (508)
-++-.+|.|+.+ |-.|+|
T Consensus 68 affhglwtwfiafcladvf 86 (102)
T PF13074_consen 68 AFFHGLWTWFIAFCLADVF 86 (102)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 346788998765 666654
Done!