Query psy709
Match_columns 508
No_of_seqs 259 out of 343
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 17:55:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fx3_A Cyclic nucleotide-bindi 99.7 1.3E-16 4.4E-21 150.1 16.1 153 169-335 18-184 (237)
2 3iwz_A CAP-like, catabolite ac 99.7 2E-16 6.8E-21 147.6 17.1 154 169-335 18-193 (230)
3 3mdp_A Cyclic nucleotide-bindi 99.7 1.3E-16 4.6E-21 137.4 14.6 121 169-298 13-141 (142)
4 1zyb_A Transcription regulator 99.7 1.6E-16 5.6E-21 150.1 16.0 153 169-335 25-192 (232)
5 3dn7_A Cyclic nucleotide bindi 99.7 2.5E-16 8.4E-21 143.9 16.6 147 169-336 14-175 (194)
6 3ryp_A Catabolite gene activat 99.7 1.6E-16 5.5E-21 146.2 14.2 154 169-335 3-173 (210)
7 4ev0_A Transcription regulator 99.7 3.2E-16 1.1E-20 144.8 16.2 150 169-335 6-169 (216)
8 2oz6_A Virulence factor regula 99.7 2.3E-16 7.8E-21 144.9 14.7 149 175-335 1-170 (207)
9 2gau_A Transcriptional regulat 99.7 1.3E-16 4.5E-21 149.6 13.0 154 169-335 17-186 (232)
10 3d0s_A Transcriptional regulat 99.7 1.3E-16 4.3E-21 149.3 11.9 154 169-335 13-183 (227)
11 3dkw_A DNR protein; CRP-FNR, H 99.7 1.4E-16 4.6E-21 148.4 11.9 154 169-335 16-184 (227)
12 2pqq_A Putative transcriptiona 99.7 6.1E-16 2.1E-20 134.0 14.7 124 169-305 12-140 (149)
13 3dv8_A Transcriptional regulat 99.7 7.9E-16 2.7E-20 142.6 15.8 154 169-335 10-175 (220)
14 3gyd_A CNMP-BD protein, cyclic 99.7 1.4E-15 4.9E-20 140.1 16.9 127 170-305 47-178 (187)
15 2z69_A DNR protein; beta barre 99.7 8.6E-16 2.9E-20 134.1 14.0 124 169-305 19-148 (154)
16 3kcc_A Catabolite gene activat 99.6 1.3E-15 4.4E-20 147.2 14.6 150 175-335 57-223 (260)
17 1o5l_A Transcriptional regulat 99.6 1.1E-15 3.9E-20 142.5 12.4 147 175-336 10-171 (213)
18 3ukn_A Novel protein similar t 99.6 6.6E-16 2.3E-20 144.0 10.5 125 169-302 82-208 (212)
19 3ocp_A PRKG1 protein; serine/t 99.6 2.5E-15 8.4E-20 130.5 12.4 107 169-284 30-136 (139)
20 3e6c_C CPRK, cyclic nucleotide 99.6 1.1E-15 3.9E-20 145.6 10.8 152 170-335 15-183 (250)
21 3e97_A Transcriptional regulat 99.6 5E-15 1.7E-19 138.7 15.0 154 169-335 13-181 (231)
22 4f8a_A Potassium voltage-gated 99.6 5.5E-15 1.9E-19 130.0 14.4 110 169-287 34-145 (160)
23 3la7_A Global nitrogen regulat 99.6 8E-15 2.7E-19 139.7 16.3 149 177-335 30-199 (243)
24 1vp6_A CNBD, cyclic-nucleotide 99.6 2.1E-15 7.3E-20 129.8 10.8 116 169-299 18-133 (138)
25 2bgc_A PRFA; bacterial infecti 99.6 6.3E-15 2.2E-19 139.8 13.6 150 174-335 3-175 (238)
26 3pna_A CAMP-dependent protein 99.6 1.9E-14 6.6E-19 127.4 13.3 107 169-284 45-151 (154)
27 2fmy_A COOA, carbon monoxide o 99.6 1.7E-14 5.9E-19 134.4 12.2 146 169-335 11-173 (220)
28 2ptm_A Hyperpolarization-activ 99.6 1.8E-14 6.2E-19 132.9 12.1 112 169-289 78-190 (198)
29 3bpz_A Potassium/sodium hyperp 99.6 2E-14 6.9E-19 133.2 11.9 123 169-304 79-201 (202)
30 3idb_B CAMP-dependent protein 99.5 7.5E-14 2.6E-18 124.2 13.8 120 158-284 28-155 (161)
31 1ft9_A Carbon monoxide oxidati 99.5 3.8E-14 1.3E-18 132.5 10.4 142 175-335 11-169 (222)
32 3b02_A Transcriptional regulat 99.5 1.5E-13 5.1E-18 126.3 11.4 127 191-335 1-145 (195)
33 3shr_A CGMP-dependent protein 99.5 2.4E-13 8.1E-18 132.7 12.9 119 175-304 168-292 (299)
34 4ava_A Lysine acetyltransferas 99.5 3.7E-13 1.3E-17 133.4 14.4 119 169-301 20-142 (333)
35 3of1_A CAMP-dependent protein 99.5 4.9E-13 1.7E-17 125.3 12.8 109 169-286 14-122 (246)
36 1wgp_A Probable cyclic nucleot 99.4 4.8E-14 1.6E-18 121.5 4.6 111 169-284 13-134 (137)
37 2qcs_B CAMP-dependent protein 99.4 1.8E-12 6.1E-17 125.5 14.9 109 170-287 47-155 (291)
38 3shr_A CGMP-dependent protein 99.4 1.4E-12 4.9E-17 127.1 14.0 117 159-284 30-152 (299)
39 2d93_A RAP guanine nucleotide 99.4 7.9E-13 2.7E-17 114.1 10.8 101 170-280 24-127 (134)
40 1o7f_A CAMP-dependent RAP1 gua 99.4 1.3E-12 4.4E-17 135.5 9.7 170 153-336 27-230 (469)
41 3of1_A CAMP-dependent protein 99.4 3.1E-12 1.1E-16 119.8 11.3 107 169-284 132-239 (246)
42 2zcw_A TTHA1359, transcription 99.3 1.6E-12 5.4E-17 119.7 8.2 130 188-335 4-152 (202)
43 4din_B CAMP-dependent protein 99.3 7.2E-12 2.5E-16 128.6 12.9 107 170-285 138-244 (381)
44 2qcs_B CAMP-dependent protein 99.3 2E-11 6.8E-16 118.1 13.1 107 169-284 164-276 (291)
45 3beh_A MLL3241 protein; transm 99.2 5.8E-13 2E-17 135.0 0.0 118 169-301 235-352 (355)
46 3tnp_B CAMP-dependent protein 99.2 6E-11 2.1E-15 123.5 13.9 106 170-284 153-262 (416)
47 1o7f_A CAMP-dependent RAP1 gua 99.2 3.2E-11 1.1E-15 125.0 11.2 120 159-287 329-456 (469)
48 3tnp_B CAMP-dependent protein 99.2 7.2E-11 2.5E-15 122.9 11.1 122 169-303 274-406 (416)
49 4din_B CAMP-dependent protein 99.1 9.3E-11 3.2E-15 120.3 9.1 106 170-284 256-367 (381)
50 3cf6_E RAP guanine nucleotide 99.1 1.6E-10 5.4E-15 128.5 11.4 116 160-284 25-148 (694)
51 4f7z_A RAP guanine nucleotide 98.9 1.3E-08 4.5E-13 116.3 15.4 120 152-282 26-159 (999)
52 4f7z_A RAP guanine nucleotide 98.5 7.2E-07 2.5E-11 102.0 15.5 118 152-278 321-447 (999)
53 3rns_A Cupin 2 conserved barre 91.8 0.55 1.9E-05 44.5 8.7 71 189-270 39-109 (227)
54 2qjv_A Uncharacterized IOLB-li 89.9 1.7 5.9E-05 43.3 10.5 79 189-271 31-112 (270)
55 3fjs_A Uncharacterized protein 89.8 1.8 6E-05 36.4 9.2 67 189-266 38-104 (114)
56 2ozj_A Cupin 2, conserved barr 87.2 2.3 7.9E-05 35.0 8.1 67 191-268 42-108 (114)
57 1yhf_A Hypothetical protein SP 86.6 3.7 0.00013 33.6 9.0 67 190-267 43-109 (115)
58 3lwc_A Uncharacterized protein 85.3 6.7 0.00023 33.5 10.3 69 189-269 42-111 (119)
59 1v70_A Probable antibiotics sy 83.4 8.4 0.00029 30.1 9.5 49 189-239 30-79 (105)
60 4e2g_A Cupin 2 conserved barre 82.6 5.4 0.00018 33.2 8.4 50 189-240 43-92 (126)
61 2pfw_A Cupin 2, conserved barr 81.6 7.4 0.00025 31.7 8.8 68 189-267 36-103 (116)
62 3rns_A Cupin 2 conserved barre 80.4 4.7 0.00016 38.0 8.1 68 189-267 155-223 (227)
63 2fqp_A Hypothetical protein BP 79.8 4.8 0.00017 32.4 6.9 51 189-240 20-72 (97)
64 2gu9_A Tetracenomycin polyketi 77.8 12 0.00041 29.9 8.7 49 189-239 23-74 (113)
65 3kgz_A Cupin 2 conserved barre 75.4 8 0.00027 34.7 7.6 51 189-241 46-96 (156)
66 3ibm_A Cupin 2, conserved barr 74.7 9.4 0.00032 34.4 8.0 88 189-286 58-157 (167)
67 3bu7_A Gentisate 1,2-dioxygena 73.2 11 0.00037 39.3 8.9 79 189-275 296-374 (394)
68 3h8u_A Uncharacterized conserv 72.4 8.2 0.00028 32.1 6.5 49 189-239 41-91 (125)
69 3l2h_A Putative sugar phosphat 72.0 12 0.0004 32.8 7.8 50 189-239 48-98 (162)
70 2b8m_A Hypothetical protein MJ 70.3 8.9 0.0003 31.5 6.2 49 190-239 30-78 (117)
71 2q30_A Uncharacterized protein 68.9 19 0.00064 28.7 7.8 67 190-267 36-105 (110)
72 3d82_A Cupin 2, conserved barr 68.3 7.9 0.00027 30.5 5.3 51 209-269 51-101 (102)
73 2pyt_A Ethanolamine utilizatio 67.7 21 0.00071 31.1 8.3 66 189-267 59-124 (133)
74 3h7j_A Bacilysin biosynthesis 67.5 17 0.00057 34.5 8.3 45 191-237 38-82 (243)
75 1vj2_A Novel manganese-contain 67.2 13 0.00046 31.2 6.8 50 189-240 50-99 (126)
76 3i7d_A Sugar phosphate isomera 67.1 15 0.0005 32.8 7.4 52 189-241 45-97 (163)
77 3jzv_A Uncharacterized protein 66.5 16 0.00054 33.1 7.6 53 189-243 55-107 (166)
78 3h7j_A Bacilysin biosynthesis 66.4 16 0.00056 34.5 8.0 51 191-243 149-200 (243)
79 2d40_A Z3393, putative gentisa 65.2 17 0.00059 36.8 8.3 74 190-274 271-344 (354)
80 3es1_A Cupin 2, conserved barr 65.0 12 0.00039 34.7 6.4 48 188-237 80-128 (172)
81 2bnm_A Epoxidase; oxidoreducta 64.1 15 0.00051 33.1 6.9 51 189-239 119-174 (198)
82 1sfn_A Conserved hypothetical 63.9 17 0.00058 34.7 7.6 73 188-268 166-238 (246)
83 1o4t_A Putative oxalate decarb 63.7 25 0.00086 29.9 8.0 47 190-238 60-107 (133)
84 2f4p_A Hypothetical protein TM 63.0 16 0.00054 31.9 6.6 51 189-240 50-100 (147)
85 2vpv_A Protein MIF2, MIF2P; nu 61.7 19 0.00063 33.2 7.1 70 191-268 92-162 (166)
86 1sfn_A Conserved hypothetical 61.5 21 0.00073 33.9 7.8 66 190-268 53-118 (246)
87 3nw4_A Gentisate 1,2-dioxygena 61.5 26 0.00089 36.2 8.9 77 189-276 281-357 (368)
88 4i4a_A Similar to unknown prot 60.6 41 0.0014 27.7 8.6 48 189-238 36-83 (128)
89 2i45_A Hypothetical protein; n 59.8 9.2 0.00031 31.0 4.2 54 209-272 49-103 (107)
90 4axo_A EUTQ, ethanolamine util 59.6 22 0.00075 32.1 7.1 52 208-269 84-135 (151)
91 1sq4_A GLXB, glyoxylate-induce 59.1 25 0.00087 34.2 8.0 51 188-239 192-242 (278)
92 2vqa_A SLL1358 protein, MNCA; 57.8 40 0.0014 33.4 9.3 53 189-242 236-293 (361)
93 1dgw_A Canavalin; duplicated s 57.1 14 0.00048 33.5 5.4 50 189-239 43-95 (178)
94 1o5u_A Novel thermotoga mariti 56.2 30 0.001 28.6 6.9 58 176-238 21-79 (101)
95 1y3t_A Hypothetical protein YX 55.0 27 0.00093 33.9 7.5 51 189-240 48-98 (337)
96 2d40_A Z3393, putative gentisa 54.9 42 0.0014 34.0 9.0 75 189-273 102-178 (354)
97 3cew_A Uncharacterized cupin p 53.6 29 0.00098 28.8 6.4 50 189-239 28-78 (125)
98 4e2q_A Ureidoglycine aminohydr 53.5 16 0.00053 36.2 5.4 71 189-270 72-143 (266)
99 1y9q_A Transcriptional regulat 53.5 29 0.00099 31.1 6.9 48 190-238 107-155 (192)
100 1rc6_A Hypothetical protein YL 53.3 30 0.001 33.0 7.3 50 189-239 181-230 (261)
101 1sq4_A GLXB, glyoxylate-induce 52.7 18 0.00063 35.3 5.8 72 189-268 70-142 (278)
102 2oa2_A BH2720 protein; 1017534 51.9 28 0.00094 30.1 6.3 51 190-240 46-101 (148)
103 3ht1_A REMF protein; cupin fol 51.4 27 0.00092 29.3 6.0 48 191-240 43-92 (145)
104 3nw4_A Gentisate 1,2-dioxygena 50.3 48 0.0016 34.2 8.7 79 188-276 104-184 (368)
105 1rc6_A Hypothetical protein YL 49.8 20 0.00067 34.3 5.4 71 190-268 62-133 (261)
106 2vec_A YHAK, pirin-like protei 49.5 81 0.0028 30.7 9.8 68 192-269 187-254 (256)
107 3ebr_A Uncharacterized RMLC-li 49.3 26 0.0009 31.6 5.8 72 188-272 43-118 (159)
108 1lr5_A Auxin binding protein 1 48.5 27 0.00091 30.6 5.7 51 189-240 43-101 (163)
109 2vqa_A SLL1358 protein, MNCA; 46.8 56 0.0019 32.3 8.4 51 189-240 54-109 (361)
110 1sef_A Conserved hypothetical 45.9 29 0.00098 33.5 5.9 70 189-267 184-255 (274)
111 1sef_A Conserved hypothetical 43.6 25 0.00084 34.0 5.0 71 190-268 65-136 (274)
112 3bcw_A Uncharacterized protein 42.3 16 0.00055 31.6 3.1 44 192-238 54-98 (123)
113 4b29_A Dimethylsulfoniopropion 41.8 34 0.0011 33.0 5.5 52 189-241 134-185 (217)
114 1tq5_A Protein YHHW; bicupin, 41.5 51 0.0017 31.8 6.8 72 192-278 165-237 (242)
115 3es4_A Uncharacterized protein 40.9 17 0.00057 31.7 3.0 44 193-238 48-91 (116)
116 2opk_A Hypothetical protein; p 40.9 16 0.00056 30.4 2.8 63 178-240 20-86 (112)
117 1j58_A YVRK protein; cupin, de 40.8 73 0.0025 31.8 8.2 74 188-269 258-336 (385)
118 2o1q_A Putative acetyl/propion 40.5 30 0.001 30.4 4.6 54 189-244 46-101 (145)
119 1j58_A YVRK protein; cupin, de 40.0 44 0.0015 33.5 6.4 52 188-240 80-135 (385)
120 1juh_A Quercetin 2,3-dioxygena 39.2 22 0.00074 35.9 4.0 70 197-276 262-334 (350)
121 2q1z_B Anti-sigma factor CHRR, 39.1 53 0.0018 30.3 6.3 65 189-267 127-192 (195)
122 2o8q_A Hypothetical protein; c 38.1 29 0.00099 29.0 4.1 30 209-239 65-95 (134)
123 1fi2_A Oxalate oxidase, germin 37.1 1.6E+02 0.0054 26.8 9.3 52 189-241 74-133 (201)
124 4e2q_A Ureidoglycine aminohydr 35.7 75 0.0026 31.2 7.1 73 185-266 184-257 (266)
125 3d0j_A Uncharacterized protein 35.4 58 0.002 29.4 5.7 55 207-270 49-110 (140)
126 3myx_A Uncharacterized protein 33.4 66 0.0022 31.2 6.2 67 191-270 51-117 (238)
127 3bu7_A Gentisate 1,2-dioxygena 33.3 87 0.003 32.5 7.5 78 188-275 124-204 (394)
128 3lag_A Uncharacterized protein 32.5 50 0.0017 26.9 4.5 51 190-241 20-73 (98)
129 1uij_A Beta subunit of beta co 31.5 66 0.0023 33.4 6.2 51 189-240 51-104 (416)
130 2qnk_A 3-hydroxyanthranilate 3 28.8 2.1E+02 0.0072 28.6 9.0 70 189-270 209-278 (286)
131 1x82_A Glucose-6-phosphate iso 28.4 58 0.002 29.7 4.6 74 189-269 69-154 (190)
132 2cav_A Protein (canavalin); vi 27.6 72 0.0025 33.5 5.8 51 189-240 88-141 (445)
133 1yfu_A 3-hydroxyanthranilate-3 24.2 87 0.003 29.2 4.9 57 207-272 54-114 (174)
134 2xlg_A SLL1785 protein, CUCA; 24.0 69 0.0024 30.8 4.4 49 192-240 48-115 (239)
135 2ea7_A 7S globulin-1; beta bar 23.9 99 0.0034 32.3 6.0 52 188-240 62-116 (434)
136 4h7l_A Uncharacterized protein 22.4 59 0.002 29.7 3.4 49 209-269 67-117 (157)
137 1zvf_A 3-hydroxyanthranilate 3 21.6 1E+02 0.0035 28.8 4.9 57 207-273 53-117 (176)
138 2phl_A Phaseolin; plant SEED s 20.2 1.2E+02 0.0042 31.3 5.7 47 189-236 54-103 (397)
No 1
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.71 E-value=1.3e-16 Score=150.14 Aligned_cols=153 Identities=13% Similarity=0.177 Sum_probs=125.6
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFE 243 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~ 243 (508)
+|++ +++++++.+.+ .++.++++||+.++.+| ++.+++++|++|.++++. +| .++..++||++||+.+.+
T Consensus 18 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~G-~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~ 92 (237)
T 3fx3_A 18 LIRS--LPEQHVDALLS--QAVWRSYDRGETLFLQE-EKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVAL 92 (237)
T ss_dssp HHHT--SCHHHHHHHHT--TCEEEEECTTCEEECTT-SCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECHHHHH
T ss_pred hhcc--CCHHHHHHHHh--hCEEEEECCCCEEEcCC-CccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEechHHHh
Confidence 3665 58999999995 59999999999999999 788999999999999987 33 689999999999999988
Q ss_pred cccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhhhhhcc
Q psy709 244 SRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNKV---------GRRTGLISS 314 (508)
Q Consensus 244 s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ki---------~Ri~s~Ls~ 314 (508)
+ +..++++++|.++|+++.++++++.++++++|.+...+... +++|+..+++++ +|++.+|..
T Consensus 93 ~----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~----l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~ 164 (237)
T 3fx3_A 93 R----NTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILAT----TFGHLHSLVAQLEQLKAQTGAQRVAEFLLE 164 (237)
T ss_dssp H----TCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred c----CCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7 45667789999999999999999999999999999877655 556666655552 899999985
Q ss_pred cccccCCeeeEeeeccccccc
Q psy709 315 EIMTEKGSHLDIRLPCVTSAI 335 (508)
Q Consensus 315 ~~~~~~G~~~dirLp~~~~~L 335 (508)
... +.|....+++|.+++++
T Consensus 165 ~~~-~~~~~~~~~l~~t~~~i 184 (237)
T 3fx3_A 165 LCD-CDTGACEVTLPYDKMLI 184 (237)
T ss_dssp HCC-C-----EEECCSCTHHH
T ss_pred Hhh-hcCCCeEEEecCCHHHH
Confidence 444 33456678899888877
No 2
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.71 E-value=2e-16 Score=147.56 Aligned_cols=154 Identities=12% Similarity=0.148 Sum_probs=121.4
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFE 243 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~ 243 (508)
+|.+ +++++++.+.+ .++.++++||+.++.|| ++.+++++|++|.+++++ +| .++..++||++|||.+.+
T Consensus 18 lf~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~ 92 (230)
T 3iwz_A 18 PSLT--LDAGTIERFLA--HSHRRRYPTRTDVFRPG-DPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLF 92 (230)
T ss_dssp ------CCHHHHHHHHT--TSEEEEECTTCEEECTT-SBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCGGGT
T ss_pred hhcc--CCHHHHHHHHH--hCeEEEeCCCCEEECCC-CCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEehhhh
Confidence 4664 58999999995 68999999999999999 788999999999999987 33 689999999999999998
Q ss_pred cccccCCceeEEEEEeccEEEEEEehHHHHHHHhcc-----hHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhh
Q psy709 244 SRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKE-----TYLANVMTVLVAKDITTKLYAMNNKV---------GRRT 309 (508)
Q Consensus 244 s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~-----P~L~~lf~~lIgkDLa~KL~~Ln~ki---------~Ri~ 309 (508)
. ....++++++|.++|+++.++++++.++++++ |.+...+... +++|+..+++++ +|++
T Consensus 93 ~---~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~----l~~~l~~~~~~~~~l~~~~~~~Rl~ 165 (230)
T 3iwz_A 93 I---ESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQ----LSKRLLDTTRKASRLAFLDVTDRIV 165 (230)
T ss_dssp S---CCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred c---CCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHH----HHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 7 11246778999999999999999999999999 9888766655 566666666552 8999
Q ss_pred hhhcccccccCC---eeeEeeeccccccc
Q psy709 310 GLISSEIMTEKG---SHLDIRLPCVTSAI 335 (508)
Q Consensus 310 s~Ls~~~~~~~G---~~~dirLp~~~~~L 335 (508)
.+|..... +.| ....+.+|.++++|
T Consensus 166 ~~L~~l~~-~~~~~~~~~~~~~~lt~~~l 193 (230)
T 3iwz_A 166 RTLHDLSK-EPEAMSHPQGTQLRVSRQEL 193 (230)
T ss_dssp HHHHHHTT-STTCEEETTEEEEECCHHHH
T ss_pred HHHHHHHH-hhCCCCCCCceecCCCHHHH
Confidence 99984333 111 12235677777777
No 3
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.71 E-value=1.3e-16 Score=137.41 Aligned_cols=121 Identities=17% Similarity=0.272 Sum_probs=105.9
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---C--CEE---EeecCCCCeeccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---D--KQY---LHPIATGEFLDSP 240 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---d--g~~---Lh~I~PGqFfGE~ 240 (508)
+|+. +++++++++.+ ..+.++++||+.++.|| ++.+++|+|++|.+++++ + +.+ +..++||++|||.
T Consensus 13 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~~ 87 (142)
T 3mdp_A 13 FFAS--LTDEQLKDIAL--ISEEKSFPTGSVIFKEN-SKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVS 87 (142)
T ss_dssp HHHT--SCHHHHHHHHH--TEEEEEECTTCEEECTT-SBCCEEEEEEESCEEEECC---------CEEEEECTTCEECGG
T ss_pred hhcc--CCHHHHHHHHH--hhcEEecCCCCEEEeCC-CCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEechH
Confidence 4554 58999999995 58999999999999999 788999999999999986 2 256 8999999999999
Q ss_pred ccccccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q psy709 241 EFESRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKL 298 (508)
Q Consensus 241 e~~s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL 298 (508)
+++. +..+++|++|.++|+++.+++++++++++++|.+...+.+.+++.+++|+
T Consensus 88 ~~~~----~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~rl 141 (142)
T 3mdp_A 88 SLIK----PYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLARL 141 (142)
T ss_dssp GSST----TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHTT
T ss_pred HHcC----CCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHhc
Confidence 9998 55667789999999999999999999999999999988888888888775
No 4
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.71 E-value=1.6e-16 Score=150.12 Aligned_cols=153 Identities=10% Similarity=0.196 Sum_probs=125.6
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---C--CEEEeecCCCCeecccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---D--KQYLHPIATGEFLDSPEFE 243 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---d--g~~Lh~I~PGqFfGE~e~~ 243 (508)
+|+. +++++++++.++..++.++++|||.++.|| ++.+.+++|++|.+++++ + +.++..++||++|||.+.+
T Consensus 25 lf~~--l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G-~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG~~~~~ 101 (232)
T 1zyb_A 25 LFQG--LCHEDFTSILDKVKLHFIKHKAGETIIKSG-NPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLF 101 (232)
T ss_dssp GGTT--CCHHHHHHHHHTSCCEEEEECTTCEEECTT-SBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGGGGS
T ss_pred cccC--CCHHHHHHHHhhCCcEEEEECCCCEEECCC-CcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeeeehHHh
Confidence 5765 589999999942118999999999999999 788999999999999986 2 3789999999999999998
Q ss_pred cccccCCc-eeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhhhhhc
Q psy709 244 SRANSENK-FKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNKV---------GRRTGLIS 313 (508)
Q Consensus 244 s~pss~~~-fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ki---------~Ri~s~Ls 313 (508)
+ +.. +++|++|.++|+++.+++++++++++++|.+...+.+. +++|+..+++++ +|++.+|.
T Consensus 102 ~----~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~----l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~ 173 (232)
T 1zyb_A 102 G----MNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNI----VSNRAQNLYSRLWDEPTLDLKSKIIRFFL 173 (232)
T ss_dssp S----SCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHH----HHHHHHHHHHHTTSCCCCSHHHHHHHHHH
T ss_pred C----CCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHH----HHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 8 344 67889999999999999999999999999999877655 666666666652 89999987
Q ss_pred ccccccCCeeeEeeeccccccc
Q psy709 314 SEIMTEKGSHLDIRLPCVTSAI 335 (508)
Q Consensus 314 ~~~~~~~G~~~dirLp~~~~~L 335 (508)
.... +.|+ .+.+|.++++|
T Consensus 174 ~l~~-~~~~--~~~~~~t~~~l 192 (232)
T 1zyb_A 174 SHCE-KPQG--EKTFKVKMDDL 192 (232)
T ss_dssp TTCS-SSSS--CEEEECCHHHH
T ss_pred HHHh-hcCC--eEEecCCHHHH
Confidence 5443 2233 56777778887
No 5
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.71 E-value=2.5e-16 Score=143.87 Aligned_cols=147 Identities=10% Similarity=0.054 Sum_probs=104.9
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeeccc-cc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSP-EF 242 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~-e~ 242 (508)
.|.+ +++++++.+.+ .++.++++||+.++.|| ++.+++++|++|.+++++ +| .++.+++||+++||. ++
T Consensus 14 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~l~~~G-~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~~~ 88 (194)
T 3dn7_A 14 KFIF--LTDEDAGTLSA--FFQLKKVRKKETLLKTG-EICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMAF 88 (194)
T ss_dssp TTSC--CCHHHHHHHHT--TCEEEEECTTCEEECTT-SBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHHHH
T ss_pred HhCC--CCHHHHHHHHH--hCEEEEEcCCCEEECCC-CeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehHHH
Confidence 4775 58999999995 58999999999999999 788999999999999987 34 688999999999996 66
Q ss_pred ccccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhhhhhc
Q psy709 243 ESRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNKV---------GRRTGLIS 313 (508)
Q Consensus 243 ~s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ki---------~Ri~s~Ls 313 (508)
.+ +..++++++|.+||+++.+++++++++++++|.+...+...++ +++..+++++ +|++.+|.
T Consensus 89 ~~----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~----~~l~~~~~~~~~l~~~~~~~Rl~~~L~ 160 (194)
T 3dn7_A 89 QK----QQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQ----KSFAAAQLRSKFQHMYSKEEQYHNFSS 160 (194)
T ss_dssp HH----TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHH----HHHHHHHHHHHHHHHC-----------
T ss_pred hc----CCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 66 4456677999999999999999999999999999998877654 4444444442 78888885
Q ss_pred ccccccCCeeeEeeecccccccC
Q psy709 314 SEIMTEKGSHLDIRLPCVTSAIK 336 (508)
Q Consensus 314 ~~~~~~~G~~~dirLp~~~~~L~ 336 (508)
.. .++.+|.++++++
T Consensus 161 ~~--------~~~~~~~t~~~iA 175 (194)
T 3dn7_A 161 RF--------PEFIQRVPQYLLA 175 (194)
T ss_dssp -----------------------
T ss_pred HC--------hHHHHHCCHHHHH
Confidence 32 1456666777774
No 6
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.70 E-value=1.6e-16 Score=146.21 Aligned_cols=154 Identities=13% Similarity=0.175 Sum_probs=120.5
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFE 243 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~ 243 (508)
+++| +|+++++.+.+ .++.++++||+.++.|| ++.+++++|++|.+++++ +| .++..++||++|||.+.+
T Consensus 3 l~~~--l~~~~l~~l~~--~~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 77 (210)
T 3ryp_A 3 LGKP--QTDPTLEWFLS--HCHIHKYPSKSTLIHQG-EKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLF 77 (210)
T ss_dssp ------CCCHHHHHHHT--TSEEEEECTTCEEECTT-SBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTT
T ss_pred CCCc--CCHHHHHHHHH--hcEEEEeCCCCEEECCC-CCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHh
Confidence 3455 58999999994 69999999999999999 788999999999999986 33 589999999999999988
Q ss_pred cccccCC-ceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhhhhhc
Q psy709 244 SRANSEN-KFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNKV---------GRRTGLIS 313 (508)
Q Consensus 244 s~pss~~-~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ki---------~Ri~s~Ls 313 (508)
. +. .+++|++|.+||+++.++++++.++++++|.+...+... +++|+..+++++ +|++.+|.
T Consensus 78 ~----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~----l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~ 149 (210)
T 3ryp_A 78 E----EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQ----MARRLQVTSEKVGNLAFLDVTGRIAQTLL 149 (210)
T ss_dssp S----TTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHH----HHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred c----CCCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHH----HHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 8 33 567789999999999999999999999999999877655 555555555542 89999887
Q ss_pred ccccccC--CeeeEeeeccccccc
Q psy709 314 SEIMTEK--GSHLDIRLPCVTSAI 335 (508)
Q Consensus 314 ~~~~~~~--G~~~dirLp~~~~~L 335 (508)
....... .....+.+|.+++++
T Consensus 150 ~l~~~~~~~~~~~~~~~~~t~~~i 173 (210)
T 3ryp_A 150 NLAKQPDAMTHPDGMQIKITRQEI 173 (210)
T ss_dssp HHTTSTTCEEETTEEEEECCHHHH
T ss_pred HHHHhcCcCCCCCceEeccCHHHH
Confidence 4332111 012235677777777
No 7
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.70 E-value=3.2e-16 Score=144.79 Aligned_cols=150 Identities=14% Similarity=0.171 Sum_probs=122.9
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFE 243 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~ 243 (508)
+|+. +++++++.+.+ ..+.++++||+.++.|| ++.+++++|++|.++++. +| .++..++||++|||.+++
T Consensus 6 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 6 LFHG--LAPEEVDLALS--YFQRRLYPQGKPIFYQG-DLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp GGTT--CCHHHHHHHHT--TCEEEEECTTCEEECTT-CBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred hhcC--CCHHHHHHHHH--hheEEEeCCCCEEEeCC-CCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 5775 58999999995 58999999999999999 788999999999999986 44 588999999999999988
Q ss_pred cccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh---------hhhhhhhhcc
Q psy709 244 SRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK---------VGRRTGLISS 314 (508)
Q Consensus 244 s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k---------i~Ri~s~Ls~ 314 (508)
+ +..+++|++|.+||+++.++++++.++++++|.+...+... +++|+..++++ -+|++.+|..
T Consensus 81 ~----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~Rl~~~L~~ 152 (216)
T 4ev0_A 81 D----EGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAAL----LARRLREADLELDLLSFEEARNRVAYALLK 152 (216)
T ss_dssp H----CCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C----CCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8 45567789999999999999999999999999999877766 45555555544 2899999975
Q ss_pred cccccCCeeeEeeeccccccc
Q psy709 315 EIMTEKGSHLDIRLPCVTSAI 335 (508)
Q Consensus 315 ~~~~~~G~~~dirLp~~~~~L 335 (508)
.. ++|. .+.+|.+++++
T Consensus 153 ~~--~~~~--~~~~~~t~~~l 169 (216)
T 4ev0_A 153 LL--RQGL--GPLFQIRHHEL 169 (216)
T ss_dssp HH--HTTC--CSEEECCHHHH
T ss_pred Hh--hcCC--ccCCCCCHHHH
Confidence 43 2332 34566667776
No 8
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.69 E-value=2.3e-16 Score=144.90 Aligned_cols=149 Identities=11% Similarity=0.174 Sum_probs=118.8
Q ss_pred CCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccccccccC
Q psy709 175 VSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFESRANSE 249 (508)
Q Consensus 175 LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~s~pss~ 249 (508)
+|+++++.+.+ .++.++++||+.++.|| ++.+++++|++|.+++++ +| .++..++||++|||.++++ +
T Consensus 1 l~~~~l~~l~~--~~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~----~ 73 (207)
T 2oz6_A 1 MKLKHLDKLLA--HCHRRRYTAKSTIIYAG-DRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFE----K 73 (207)
T ss_dssp CCHHHHHHHHH--SSEEEEECTTCEEECTT-SBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----
T ss_pred CCHHHHHHHHh--hcceEEECCCCEEEcCC-CCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhc----C
Confidence 58999999995 59999999999999999 788999999999999986 33 6899999999999999888 2
Q ss_pred C----ceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh---------hhhhhhhhcccc
Q psy709 250 N----KFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK---------VGRRTGLISSEI 316 (508)
Q Consensus 250 ~----~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k---------i~Ri~s~Ls~~~ 316 (508)
. .+++|++|.++|+++.+++++++++++++|.+...+... +++|+..++++ .+|++.+|..-.
T Consensus 74 ~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~----l~~~~~~~~~~~~~l~~~~~~~Rl~~~L~~l~ 149 (207)
T 2oz6_A 74 EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQ----MADRLRKTTRKVGDLAFLDVTGRVARTLLDLC 149 (207)
T ss_dssp ----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHT
T ss_pred CCCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3 567789999999999999999999999999998866554 55666555554 288988886322
Q ss_pred cccCC---eeeEeeeccccccc
Q psy709 317 MTEKG---SHLDIRLPCVTSAI 335 (508)
Q Consensus 317 ~~~~G---~~~dirLp~~~~~L 335 (508)
. +.| ....+.+|.++++|
T Consensus 150 ~-~~~~~~~~~~~~~~~t~~~l 170 (207)
T 2oz6_A 150 Q-QPDAMTHPDGMQIKITRQEI 170 (207)
T ss_dssp T-STTCEEETTEEEEECCHHHH
T ss_pred H-hcCCCCCCCceecccCHHHH
Confidence 2 111 11235667777776
No 9
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.69 E-value=1.3e-16 Score=149.59 Aligned_cols=154 Identities=11% Similarity=0.113 Sum_probs=123.4
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe-----CCEEEeecCCCCeecccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ-----DKQYLHPIATGEFLDSPEFE 243 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~-----dg~~Lh~I~PGqFfGE~e~~ 243 (508)
+|++ +++++++.+.+ .++.++++|||.++.|| ++.+++++|++|.+++++ ++.++..++||++||+.+++
T Consensus 17 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~g-~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~ 91 (232)
T 2gau_A 17 VWSL--LNEEERELLDK--EIQPFPCKKASTVFSEG-DIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYF 91 (232)
T ss_dssp HHTT--CCHHHHHHHHH--HCEEEEECTTCEEECTT-CCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHH
T ss_pred hhhc--CCHHHHHHHHh--hCeEEEECCCCEEEeCC-CCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhh
Confidence 5665 58999999995 69999999999999999 788999999999999985 23689999999999999988
Q ss_pred cccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh---------hhhhhhhhcc
Q psy709 244 SRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK---------VGRRTGLISS 314 (508)
Q Consensus 244 s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k---------i~Ri~s~Ls~ 314 (508)
+ +..+++|++|.++|+++.+++++++++++++|.+...+... +++|+..++++ -+|++.+|+.
T Consensus 92 ~----~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~----l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~ 163 (232)
T 2gau_A 92 A----EETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKA----LAKELGYAERRTVTLTQKHVRGRLAETLLI 163 (232)
T ss_dssp H----TSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred C----CCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7 44567789999999999999999999999999999877766 45555555544 2899999863
Q ss_pred ccc--ccCCeeeEeeeccccccc
Q psy709 315 EIM--TEKGSHLDIRLPCVTSAI 335 (508)
Q Consensus 315 ~~~--~~~G~~~dirLp~~~~~L 335 (508)
-.. .+.+....+.+|.++++|
T Consensus 164 l~~~~~~~~~~~~~~~~~t~~~l 186 (232)
T 2gau_A 164 LKENFGFENDGATLSIYLSREEL 186 (232)
T ss_dssp HHHHHCBCTTSSBBSCCCCHHHH
T ss_pred HHHHcCCCCCCcEEEcccCHHHH
Confidence 111 011123456677777777
No 10
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.68 E-value=1.3e-16 Score=149.27 Aligned_cols=154 Identities=16% Similarity=0.256 Sum_probs=124.9
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFE 243 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~ 243 (508)
+|+. +++++++.+.+ ..+.++++||+.++.|| ++.+++++|++|.+++++ +| .++..++||++|||.+++
T Consensus 13 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~G-~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~ 87 (227)
T 3d0s_A 13 IFQG--VEPSAIAALTK--QLQPVDFPRGHTVFAEG-EPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIF 87 (227)
T ss_dssp TTSS--CCSSTTHHHHT--TSCEEEECTTCEEECTT-CCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCHHHH
T ss_pred hhcC--CCHHHHHHHHh--hCeEEEeCCCCEEEcCC-CcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeHHHc
Confidence 4665 58899999995 58999999999999999 788999999999999987 34 688999999999999998
Q ss_pred cccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhhhhhcc
Q psy709 244 SRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNKV---------GRRTGLISS 314 (508)
Q Consensus 244 s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ki---------~Ri~s~Ls~ 314 (508)
+ +..+++|++|.++|+++.+++++++++++++|.+...+... +++|+..+++++ +|++.+|..
T Consensus 88 ~----~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~----l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~ 159 (227)
T 3d0s_A 88 D----PGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRV----LARRLRRTNNNLADLIFTDVPGRVAKQLLQ 159 (227)
T ss_dssp S----CSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHH----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred C----CCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8 45677789999999999999999999999999999877655 556666555552 889888873
Q ss_pred ccc---ccCCeeeEeeeccccccc
Q psy709 315 EIM---TEKGSHLDIRLPCVTSAI 335 (508)
Q Consensus 315 ~~~---~~~G~~~dirLp~~~~~L 335 (508)
... ...+....+++|.++++|
T Consensus 160 l~~~~~~~~~~~~~i~~~~t~~~l 183 (227)
T 3d0s_A 160 LAQRFGTQEGGALRVTHDLTQEEI 183 (227)
T ss_dssp HHHHHEEEETTEEEEECCCCHHHH
T ss_pred HHHHhCCcCCCceEEcCCCCHHHH
Confidence 221 011124567788888887
No 11
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.68 E-value=1.4e-16 Score=148.43 Aligned_cols=154 Identities=14% Similarity=0.210 Sum_probs=124.2
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---C--CEEEeecCCCCeecccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---D--KQYLHPIATGEFLDSPEFE 243 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---d--g~~Lh~I~PGqFfGE~e~~ 243 (508)
+|++ +++++++.+.+ .++.++++||+.++.|| ++.+.+++|++|.++++. + +.++..++||++|||.+++
T Consensus 16 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~ 90 (227)
T 3dkw_A 16 LFEP--LSPVQLQELLA--SSDLVNLDKGAYVFRQG-EPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMF 90 (227)
T ss_dssp TTSS--SCHHHHHHHHT--SCEEEECCTTEEEECTT-SBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCTTTT
T ss_pred hhcC--CCHHHHHHHHh--hCEEEEECCCCEEEcCC-CccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHhc
Confidence 3665 58999999995 69999999999999999 788999999999999987 2 3688999999999999988
Q ss_pred cccccCCc-eeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh---------hhhhhhhhc
Q psy709 244 SRANSENK-FKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK---------VGRRTGLIS 313 (508)
Q Consensus 244 s~pss~~~-fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k---------i~Ri~s~Ls 313 (508)
+ +.. ++++++|.+||+++.++++++.++++++|.+...+... +++|+..++++ -+|++.+|.
T Consensus 91 ~----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~----l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~ 162 (227)
T 3dkw_A 91 M----DTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAK----LSTRLHQRIDEIETLSLKNATHRVVRYLL 162 (227)
T ss_dssp T----TCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C----CCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7 333 56679999999999999999999999999999877666 44555544443 289999887
Q ss_pred ccccccCCeeeEeeeccccccc
Q psy709 314 SEIMTEKGSHLDIRLPCVTSAI 335 (508)
Q Consensus 314 ~~~~~~~G~~~dirLp~~~~~L 335 (508)
.......+....+.+|.++++|
T Consensus 163 ~~~~~~~~~~~~~~~~~t~~~l 184 (227)
T 3dkw_A 163 TLAAHAPGENCRVEIPVAKQLV 184 (227)
T ss_dssp HHHCSSSSSCCCCCCCSCTHHH
T ss_pred HhhhhcCCCCeEEEecCCHHHH
Confidence 4443222344567778788877
No 12
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.68 E-value=6.1e-16 Score=133.96 Aligned_cols=124 Identities=17% Similarity=0.214 Sum_probs=108.3
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFE 243 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~ 243 (508)
+|.. +++++++++.+ ..+.++++||+.++.|| ++.+.+++|++|.+++++ +| .++..++||+++|+.+++
T Consensus 12 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 86 (149)
T 2pqq_A 12 LFAA--LDDEQSAELRA--SMSEVTLARGDTLFHEG-DPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSLF 86 (149)
T ss_dssp TTTT--CCHHHHHHHHH--HCEEEEECTTCEEECTT-SEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGGGGT
T ss_pred hhhc--CCHHHHHHHHH--hceEEEeCCCCEEECCC-CCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechHHhc
Confidence 4664 58999999995 58999999999999999 788999999999999987 33 588999999999999998
Q ss_pred cccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy709 244 SRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNKV 305 (508)
Q Consensus 244 s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ki 305 (508)
+ +..+++|++|.++|+++.+++++++++++++|.+...+... +++|+..+++++
T Consensus 87 ~----~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~----~~~~l~~~~~~~ 140 (149)
T 2pqq_A 87 D----PGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRA----VARRLRKTNDAM 140 (149)
T ss_dssp S----CEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHH----HHHHHHHHHTTC
T ss_pred C----CCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHH----HHHHHHHHHHHH
Confidence 8 34567789999999999999999999999999999866644 778888888774
No 13
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.67 E-value=7.9e-16 Score=142.58 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=121.6
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCe--ecccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEF--LDSPE 241 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqF--fGE~e 241 (508)
+|++ +++++++.+.+ .++.++++||+.++.|| ++.+.+++|++|.++++. +| .++..++||++ +|+.+
T Consensus 10 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~G-~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~~ 84 (220)
T 3dv8_A 10 LWND--LNTAQKKLISD--NLITQHVKKGTIIHNGN-MDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASC 84 (220)
T ss_dssp GGGT--SCHHHHHHHHT--TCEEEEECTTCEEEEGG-GCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGGG
T ss_pred hhhc--CCHHHHHHHHh--hCceEEeCCCCEEECCC-CCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHHH
Confidence 4665 58999999995 58999999999999999 788999999999999987 33 58899999999 79999
Q ss_pred cccccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhhhhhcccc
Q psy709 242 FESRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK-----VGRRTGLISSEI 316 (508)
Q Consensus 242 ~~s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k-----i~Ri~s~Ls~~~ 316 (508)
+++ +..++++++|.+||+++.+++++++++++++|.+...+...+++.+.+......+. -+|++.+|....
T Consensus 85 ~~~----~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~~~ 160 (220)
T 3dv8_A 85 IMR----SIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLDKRVASFLLEET 160 (220)
T ss_dssp GCT----TCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhC----CCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 998 44567789999999999999999999999999999977766444433333222221 289999998543
Q ss_pred cccCCeeeEeeeccccccc
Q psy709 317 MTEKGSHLDIRLPCVTSAI 335 (508)
Q Consensus 317 ~~~~G~~~dirLp~~~~~L 335 (508)
. ..| .+++|.++++|
T Consensus 161 ~-~~~---~~~~~~t~~~l 175 (220)
T 3dv8_A 161 S-IEG---TNELKITHETI 175 (220)
T ss_dssp H-HHT---SSEECCCHHHH
T ss_pred h-hcC---CceecCCHHHH
Confidence 3 122 24566677776
No 14
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.67 E-value=1.4e-15 Score=140.11 Aligned_cols=127 Identities=17% Similarity=0.219 Sum_probs=114.7
Q ss_pred cCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeeccccccc
Q psy709 170 FEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFES 244 (508)
Q Consensus 170 F~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~s 244 (508)
|+ ++++++++.+.. ..+.++++||+.++.|| ++.+.+++|++|+++++. +| .++..++||++|||.+++.
T Consensus 47 f~--~l~~~~l~~l~~--~~~~~~~~~ge~i~~~G-~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~~l~ 121 (187)
T 3gyd_A 47 FG--DFSNEEVRYLCS--YMQCYAAPRDCQLLTEG-DPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMID 121 (187)
T ss_dssp SC--CCCHHHHHHHHT--TCEEEEECTTCEEECTT-SCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEESHHHHHH
T ss_pred hh--cCCHHHHHHHHH--hcEEEEeCCCCEEEcCC-CCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCeeeeHHHhC
Confidence 66 469999999984 69999999999999999 788999999999999987 33 6889999999999999887
Q ss_pred ccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy709 245 RANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNKV 305 (508)
Q Consensus 245 ~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ki 305 (508)
+..+++|++|.++|+++.+++++++++++++|.+...+...+.+.+++|++.+++++
T Consensus 122 ----~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~rl~~~~~~l 178 (187)
T 3gyd_A 122 ----GMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQLLTARFRESYDRI 178 (187)
T ss_dssp ----CCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999999999999999888888889999999999985
No 15
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.66 E-value=8.6e-16 Score=134.08 Aligned_cols=124 Identities=15% Similarity=0.217 Sum_probs=106.7
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFE 243 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~ 243 (508)
+|.. +++++++++.+ ..+.++++||+.++.+| ++.+.+++|++|.+++++ +| .++..++||++||+.+++
T Consensus 19 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~ 93 (154)
T 2z69_A 19 LFEP--LSPVQLQELLA--SSDLVNLDKGAYVFRQG-EPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMF 93 (154)
T ss_dssp TTTT--SCHHHHHHHHH--TCEEEEECTTCEEECTT-SBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGGGGG
T ss_pred hhcC--CCHHHHHHHHh--hCcEEEecCCCEEecCC-CccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccHhhc
Confidence 3554 68999999995 59999999999999999 788999999999999986 33 578999999999999998
Q ss_pred cccccCCc-eeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy709 244 SRANSENK-FKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNKV 305 (508)
Q Consensus 244 s~pss~~~-fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ki 305 (508)
. +.. +++|++|.++|+++.+++++++++++++|.+...+.+ .+++|+..+++++
T Consensus 94 ~----~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~----~~~~rl~~~~~~i 148 (154)
T 2z69_A 94 M----DTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLA----KLSTRLHQRIDEI 148 (154)
T ss_dssp S----SCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHH----HHHHHHTCCSSCC
T ss_pred c----CCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHH----HHHHHHHHHHHHH
Confidence 8 444 6778999999999999999999999999999986654 4788888887774
No 16
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.65 E-value=1.3e-15 Score=147.15 Aligned_cols=150 Identities=12% Similarity=0.163 Sum_probs=119.2
Q ss_pred CCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccccccccC
Q psy709 175 VSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFESRANSE 249 (508)
Q Consensus 175 LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~s~pss~ 249 (508)
+++++++.+.+ .++.++++||+.++.|| ++.+++|+|++|.+++++ +| .++..++||++|||.+.+. +
T Consensus 57 l~~~~l~~l~~--~~~~~~~~~ge~i~~~G-~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~----~ 129 (260)
T 3kcc_A 57 QTDPTLEWFLS--HCHIHKYPSKSTLIHQG-EKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFE----E 129 (260)
T ss_dssp --CHHHHHHHT--TSEEEEECTTCEEECTT-CBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTS----T
T ss_pred CCHHHHHHHHh--hCEEEEECCCCEEECCC-CcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhC----C
Confidence 68999999994 69999999999999999 788999999999999986 33 5899999999999999888 3
Q ss_pred C-ceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhhhhhccccccc
Q psy709 250 N-KFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNKV---------GRRTGLISSEIMTE 319 (508)
Q Consensus 250 ~-~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ki---------~Ri~s~Ls~~~~~~ 319 (508)
. .++++++|.++|+++.++++++.++++++|.+...+... +++|+..+++++ +|++.+|.......
T Consensus 130 ~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~----l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~ 205 (260)
T 3kcc_A 130 GQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQ----MARRLQVTSEKVGNLAFLLVTGRIAQTLLNLAKQP 205 (260)
T ss_dssp TCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTST
T ss_pred CCCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 3 567789999999999999999999999999998866655 556666655552 89999887432211
Q ss_pred C--CeeeEeeeccccccc
Q psy709 320 K--GSHLDIRLPCVTSAI 335 (508)
Q Consensus 320 ~--G~~~dirLp~~~~~L 335 (508)
. .....+.+|.++++|
T Consensus 206 ~~~~~~~~~~l~lt~~~l 223 (260)
T 3kcc_A 206 DAMTHPDGMQIKITRQEI 223 (260)
T ss_dssp TCEEETTEEEEECCHHHH
T ss_pred CCCCCCCceeecCCHHHH
Confidence 0 012235667777777
No 17
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.64 E-value=1.1e-15 Score=142.54 Aligned_cols=147 Identities=17% Similarity=0.271 Sum_probs=99.4
Q ss_pred CCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccccccccC
Q psy709 175 VSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFESRANSE 249 (508)
Q Consensus 175 LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~s~pss~ 249 (508)
.++++.+.+. ..++.++++||+.++.|| ++.+++++|++|.+++++ +| .++..++||++|||.+.+. +
T Consensus 10 ~~~~~~~~l~--~~~~~~~~~~g~~i~~~G-~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~----~ 82 (213)
T 1o5l_A 10 HHHMDLKKLL--PCGKVIVFRKGEIVKHQD-DPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFS----S 82 (213)
T ss_dssp ---CCGGGGG--GGSEEEEECTTCEEECTT-CBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTS----S
T ss_pred hccCCHHHHh--cccEEEEECCCCEEEcCC-CccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhc----C
Confidence 4677788888 469999999999999999 788999999999999986 34 6889999999999999887 3
Q ss_pred C-ceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhhhhhccccccc
Q psy709 250 N-KFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNKV---------GRRTGLISSEIMTE 319 (508)
Q Consensus 250 ~-~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ki---------~Ri~s~Ls~~~~~~ 319 (508)
+ .++++++|.++|+++.++++++.++++++|.+...+... +++|+..+++++ +|++.+|..... +
T Consensus 83 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~----l~~~~~~~~~~~~~l~~~~~~~Rl~~~L~~~~~-~ 157 (213)
T 1o5l_A 83 EPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKD----VSEHFRVVSEKLFFLTTKTLREKLMNFLVRHMN-E 157 (213)
T ss_dssp SCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHHCC-----------------
T ss_pred CCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-c
Confidence 3 567789999999999999999999999999998655544 556666555552 889998875433 3
Q ss_pred CCeeeEeeecccccccC
Q psy709 320 KGSHLDIRLPCVTSAIK 336 (508)
Q Consensus 320 ~G~~~dirLp~~~~~L~ 336 (508)
.| .+.+|.++++|+
T Consensus 158 ~g---~~~~~~t~~~lA 171 (213)
T 1o5l_A 158 KR---ELTLPVTLEELS 171 (213)
T ss_dssp -----------------
T ss_pred CC---cccCCCCHHHHH
Confidence 33 566777778774
No 18
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.63 E-value=6.6e-16 Score=144.04 Aligned_cols=125 Identities=24% Similarity=0.304 Sum_probs=109.2
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeeccccccccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANS 248 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss 248 (508)
+|+. +++++++.+.. ..+.+.++|||+++.|| ++.+++++|++|.+++..+|.++..++||++|||.++++
T Consensus 82 ~f~~--l~~~~l~~l~~--~~~~~~~~~ge~I~~~G-~~~~~ly~I~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~---- 152 (212)
T 3ukn_A 82 LFES--ASRGCLRSLSL--IIKTSFCAPGEFLIRQG-DALQAIYFVCSGSMEVLKDNTVLAILGKGDLIGSDSLTK---- 152 (212)
T ss_dssp GGTT--CCHHHHHHHHH--HCEEEEECTTCEEECTT-SBCCEEEEEEECCEEEESSSCEEEEECTTCEEECSCCSS----
T ss_pred Hhhc--CCHHHHHHHHH--HhheEEeCCCCEEEECC-CcccEEEEEEecEEEEEECCeEEEEecCCCCcCcHHhcc----
Confidence 4664 68999999994 69999999999999999 788999999999999999999999999999999999998
Q ss_pred CC--ceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh
Q psy709 249 EN--KFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMN 302 (508)
Q Consensus 249 ~~--~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln 302 (508)
+. ..++|++|.++|+++.++++++.++++++|.+...+...+++.++.++++.+
T Consensus 153 ~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~lr~~~ 208 (212)
T 3ukn_A 153 EQVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLREGS 208 (212)
T ss_dssp SSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEECBC--
T ss_pred CCCCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcccccccc
Confidence 33 6677899999999999999999999999999999888776665555544433
No 19
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.62 E-value=2.5e-15 Score=130.46 Aligned_cols=107 Identities=7% Similarity=0.150 Sum_probs=92.7
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeeccccccccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANS 248 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss 248 (508)
+|+. +++++++.+.. ..+.++++||+.++.+| ++.+.+++|++|.++++.+|+++..++||++|||.+++.
T Consensus 30 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~g~~~~~~~~G~~fGe~~~l~---- 100 (139)
T 3ocp_A 30 FMKN--LELSQIQEIVD--CMYPVEYGKDSCIIKEG-DVGSLVYVMEDGKVEVTKEGVKLCTMGPGKVFGELAILY---- 100 (139)
T ss_dssp TTTT--SCHHHHHHHHH--HCEEEEECSSCEEECTT-SCCCEEEEEEECCEEEEETTEEEEEECTTCEESCHHHHH----
T ss_pred hhhc--CCHHHHHHHHH--hcEEEecCCCCEEEeCC-CcCCEEEEEEeCEEEEEECCEEEEEeCCCCEeccHHHHC----
Confidence 3554 58999999995 58999999999999999 788999999999999999999999999999999999887
Q ss_pred CCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHH
Q psy709 249 ENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLAN 284 (508)
Q Consensus 249 ~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~ 284 (508)
+..+++|++|.++|+++.+++++++++++++|.+.+
T Consensus 101 ~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r 136 (139)
T 3ocp_A 101 NCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKH 136 (139)
T ss_dssp CCCCSSEEEESSCEEEEEEEHHHHHHHHTC------
T ss_pred CCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhh
Confidence 455677899999999999999999999999999876
No 20
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.62 E-value=1.1e-15 Score=145.63 Aligned_cols=152 Identities=13% Similarity=0.142 Sum_probs=122.7
Q ss_pred cCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeeccccccc
Q psy709 170 FEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFES 244 (508)
Q Consensus 170 F~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~s 244 (508)
+..-++|+++++.+.+ .++.++++||+.++.|| ++.+.+++|++|.++++. +| .++..++||+++|| .++
T Consensus 15 ~p~~~l~~~~l~~l~~--~~~~~~~~~g~~i~~~G-~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l~ 89 (250)
T 3e6c_C 15 IPDNFFPIEKLRNYTQ--MGLIRDFAKGSAVIMPG-EEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--LYP 89 (250)
T ss_dssp SSBSCSCCGGGGGGGG--GSEEEEECTTCEEECTT-CCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--CSC
T ss_pred cchhhCCHHHHHHHHh--hCeEEEECCCCEEECCC-CCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--ecC
Confidence 3334679999999994 69999999999999999 788999999999999987 33 68999999999999 555
Q ss_pred ccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhhhhhccc
Q psy709 245 RANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNKV---------GRRTGLISSE 315 (508)
Q Consensus 245 ~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ki---------~Ri~s~Ls~~ 315 (508)
+. ++++++|.++|+++.++++++.+++.++|.+...+... +++|+..+++++ +|++.+|...
T Consensus 90 ----~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~----l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l 160 (250)
T 3e6c_C 90 ----TG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKN----YLTKVAYYARQVAEMNTYNPTIRILRLFYEL 160 (250)
T ss_dssp ----CS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHH----HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ----CC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45 88999999999999999999999999999998877655 556666555552 8999998732
Q ss_pred cc---ccCCeeeEeeeccccccc
Q psy709 316 IM---TEKGSHLDIRLPCVTSAI 335 (508)
Q Consensus 316 ~~---~~~G~~~dirLp~~~~~L 335 (508)
.. .+.+....+.+|.+++++
T Consensus 161 ~~~~~~~~~~~~~i~~~~t~~~i 183 (250)
T 3e6c_C 161 CSSQGKRVGDTYEITMPLSQKSI 183 (250)
T ss_dssp HHHHCEEETTEEEEECCCCHHHH
T ss_pred HHHhCCCCCCCcEecCCCCHHHH
Confidence 21 111234567788888887
No 21
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.62 E-value=5e-15 Score=138.74 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=122.3
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFE 243 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~ 243 (508)
+|+. +++++++.+.+ .++.++++||+.++.+| ++.+++++|++|.++++. +| .++..++||++|||.+++
T Consensus 13 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~G-~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 87 (231)
T 3e97_A 13 LFQN--VPEDAMREALK--VVTERNFQPDELVVEQD-AEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAVL 87 (231)
T ss_dssp GGTT--CCHHHHHHHHH--TEEEEEECTTCBCCCTT-CTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTTTTT
T ss_pred hhcc--CCHHHHHHHHH--hcEEEEECCCCEEEeCC-CCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeHHHh
Confidence 5775 58999999995 58999999999999999 788999999999999987 33 689999999999999998
Q ss_pred cccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh-------h-hhhhhhhccc
Q psy709 244 SRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK-------V-GRRTGLISSE 315 (508)
Q Consensus 244 s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k-------i-~Ri~s~Ls~~ 315 (508)
+ +..+++|++|.++|+++.+++++++++++++|.+...+...+. +|+..++++ - +|++.+|...
T Consensus 88 ~----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~----~~l~~~~~~~~~~~~~~~~Rl~~~L~~~ 159 (231)
T 3e97_A 88 A----HQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLA----RRVTFLNDELIAFGQNTEAALTHVFANL 159 (231)
T ss_dssp C----CCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred C----CCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHH----HHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 8 5667889999999999999999999999999999987766644 444433333 3 7888888733
Q ss_pred cc--ccCCeeeEeeeccccccc
Q psy709 316 IM--TEKGSHLDIRLPCVTSAI 335 (508)
Q Consensus 316 ~~--~~~G~~~dirLp~~~~~L 335 (508)
.. ...+....+.+|.++++|
T Consensus 160 ~~~~~~~~~~~~~~~~~t~~~i 181 (231)
T 3e97_A 160 YRQRLAAGVPQPEVLPLGTQDI 181 (231)
T ss_dssp HHHHHHHTCSSTTEECCCHHHH
T ss_pred HHhcCCCCCCceEecCCCHHHH
Confidence 22 011112356677777777
No 22
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.62 E-value=5.5e-15 Score=130.03 Aligned_cols=110 Identities=17% Similarity=0.245 Sum_probs=100.7
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeeccccccccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANS 248 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss 248 (508)
+|+. +++++++.+.. ..+.++++||+.++.+| ++.+++++|++|.++++++++++..++||+++||.+++.
T Consensus 34 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~~~~~~~G~~fG~~~~~~---- 104 (160)
T 4f8a_A 34 AFRL--ASDGCLRALAM--EFQTVHCAPGDLIYHAG-ESVDSLCFVVSGSLEVIQDDEVVAILGKGDVFGDVFWKE---- 104 (160)
T ss_dssp GGTT--CCHHHHHHHHT--TCEEEEECTTCEEECTT-SBCCEEEEEEESEEEEEETTEEEEEEETTCEEECCTTTC----
T ss_pred hhhh--CCHHHHHHHHH--hceeeeeCCCCEEEeCC-CCccEEEEEEeeEEEEEECCEEEEEecCCCEeCcHHHhc----
Confidence 4664 58999999994 69999999999999999 788999999999999999999999999999999999987
Q ss_pred C--CceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHH
Q psy709 249 E--NKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMT 287 (508)
Q Consensus 249 ~--~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~ 287 (508)
. ..+++|++|.++|+++.+++++++++++++|.+...+.
T Consensus 105 ~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 145 (160)
T 4f8a_A 105 ATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFS 145 (160)
T ss_dssp SSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred CcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 3 46778899999999999999999999999999998555
No 23
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.62 E-value=8e-15 Score=139.72 Aligned_cols=149 Identities=11% Similarity=0.103 Sum_probs=117.5
Q ss_pred HHHHHHHhcccccE---EEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeeccccccc-ccc
Q psy709 177 RLQFKKLVNDQVIK---TQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFES-RAN 247 (508)
Q Consensus 177 ~eqf~~Ll~c~~a~---vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~s-~ps 247 (508)
+++++++. ..+. +++++|||.++.|| ++.+.+++|++|.++++. +| .++..++||+++|+.++++ .|+
T Consensus 30 ~~~l~~L~--~~~~~~~~~~~~~ge~i~~~G-~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~ 106 (243)
T 3la7_A 30 ANVFRQMA--TGAFPPVVETFERNKTIFFPG-DPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKS 106 (243)
T ss_dssp HHHHHHHC--CSSCCCEEEEECTTCEEECTT-SBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCS
T ss_pred HHHHHHHh--hccchheeEEECCCCEEEcCC-CCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCC
Confidence 57778887 3577 99999999999999 788999999999999987 33 6899999999999999887 221
Q ss_pred cCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh---------hhhhhhhhccccc-
Q psy709 248 SENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK---------VGRRTGLISSEIM- 317 (508)
Q Consensus 248 s~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k---------i~Ri~s~Ls~~~~- 317 (508)
.+.++++|.+||+++.+++++++++++++|.+...+... +++|+..++++ -+|++.+|.....
T Consensus 107 ---~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~----l~~~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~ 179 (243)
T 3la7_A 107 ---DRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRG----LSSRILQTEMMIETLAHRDMGSRLVSFLLILCRD 179 (243)
T ss_dssp ---BCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHH----HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred ---cceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 234789999999999999999999999999999877655 55555555544 2799999873221
Q ss_pred --ccCCeeeEeeeccccccc
Q psy709 318 --TEKGSHLDIRLPCVTSAI 335 (508)
Q Consensus 318 --~~~G~~~dirLp~~~~~L 335 (508)
.+.+....+.+|.++++|
T Consensus 180 ~g~~~~~~~~i~~~lt~~~l 199 (243)
T 3la7_A 180 FGVPCADGITIDLKLSHQAI 199 (243)
T ss_dssp HEEECSSSEEECSCCCHHHH
T ss_pred hCCCCCCCeEEeccCCHHHH
Confidence 011123567788888887
No 24
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.61 E-value=2.1e-15 Score=129.82 Aligned_cols=116 Identities=16% Similarity=0.253 Sum_probs=100.2
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeeccccccccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANS 248 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss 248 (508)
+|+. +++++++.+.+ ..+.++++||+.++.+| ++.+++++|++|.++++..+ ...++||+++|+.+++.
T Consensus 18 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~--~~~~~~G~~~G~~~~~~---- 86 (138)
T 1vp6_A 18 LFQK--LGPAVLVEIVR--ALRARTVPAGAVICRIG-EPGDRMFFVVEGSVSVATPN--PVELGPGAFFGEMALIS---- 86 (138)
T ss_dssp GGGG--CCHHHHHHHHH--HCEEEEECTTCEEECTT-SCCCEEEEEEESCEEECSSS--CEEECTTCEECHHHHHH----
T ss_pred hhhc--CCHHHHHHHHH--hhcEEEeCCCCEEEeCC-CCcceEEEEEeeEEEEEeCC--cceECCCCEeeehHhcc----
Confidence 4664 58999999995 58999999999999999 78899999999999999876 35789999999999888
Q ss_pred CCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q psy709 249 ENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLY 299 (508)
Q Consensus 249 ~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~ 299 (508)
+..+++|++|.++|+++.+++++++++++++|.+...+.+. +++|+.
T Consensus 87 ~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~----~~~r~~ 133 (138)
T 1vp6_A 87 GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKT----ALERRG 133 (138)
T ss_dssp CCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHH----HHHHCC
T ss_pred CCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHH----HHHhhc
Confidence 34556679999999999999999999999999999877655 555544
No 25
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.60 E-value=6.3e-15 Score=139.77 Aligned_cols=150 Identities=14% Similarity=0.080 Sum_probs=116.2
Q ss_pred CCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeeccccccccccc
Q psy709 174 KVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFESRANS 248 (508)
Q Consensus 174 ~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~s~pss 248 (508)
+++++++++++.+..++.++++||+.++.|| ++.+++++|++|.+++++ +| .++..+ ||++|||++++.
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G-~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~---- 76 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQW-DPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFID---- 76 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTT-CCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTT----
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCC-CCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhc----
Confidence 5789999999853468999999999999999 788999999999999987 33 688888 999999999888
Q ss_pred CCc--eeEEEEEe-ccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhhhhhccc-
Q psy709 249 ENK--FKVSIIAH-TTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNKV---------GRRTGLISSE- 315 (508)
Q Consensus 249 ~~~--fqVTI~A~-EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ki---------~Ri~s~Ls~~- 315 (508)
+.. ++.+++|. ++|+++.++++++.++++++|.+...+.+. +++|+..+++++ +|++.+|...
T Consensus 77 ~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~----l~~~l~~~~~~~~~~~~~~~~~Rla~~L~~l~ 152 (238)
T 2bgc_A 77 TETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQT----LQKQVSYSLAKFNDFSINGKLGSICSQLLILT 152 (238)
T ss_dssp TCCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCCcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 221 13445566 699999999999999999999999877655 555555555542 8889888732
Q ss_pred ----ccccCCeeeEeee-ccccccc
Q psy709 316 ----IMTEKGSHLDIRL-PCVTSAI 335 (508)
Q Consensus 316 ----~~~~~G~~~dirL-p~~~~~L 335 (508)
...++ ...+.+ |.++++|
T Consensus 153 ~~~g~~~~~--~~~i~~~~~t~~~l 175 (238)
T 2bgc_A 153 YVYGKETPD--GIKITLDNLTMQEL 175 (238)
T ss_dssp HHHEEEETT--EEEECCSCCCHHHH
T ss_pred HHhCCCCCC--ceEEEeccCCHHHH
Confidence 11122 236777 7787776
No 26
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.57 E-value=1.9e-14 Score=127.41 Aligned_cols=107 Identities=12% Similarity=0.184 Sum_probs=96.9
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeeccccccccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANS 248 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss 248 (508)
+|+. +++++++.+.+ ..+.+.++||+.++.+| ++.+.+|+|++|.++++.+|+.+..++||++|||.+++.
T Consensus 45 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~G-~~~~~~y~i~~G~v~~~~~~~~~~~~~~G~~fGe~~~~~---- 115 (154)
T 3pna_A 45 LFSH--LDDNERSDIFD--AMFPVSFIAGETVIQQG-DEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIY---- 115 (154)
T ss_dssp GGTT--CCHHHHHHHHH--HCEEEEECTTCEEECTT-SCCCEEEEEEESCEEEEETTEEEEEECTTCEECCHHHHH----
T ss_pred hhhh--CCHHHHHHHHH--hceEEEECCCCEEEeCC-CCCCeEEEEEecEEEEEECCEEEEEecCCCEeeehHhhc----
Confidence 3665 58999999995 58999999999999999 788999999999999999999999999999999999988
Q ss_pred CCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHH
Q psy709 249 ENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLAN 284 (508)
Q Consensus 249 ~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~ 284 (508)
+...++|++|.++|+++.+++++++++++++|.+.+
T Consensus 116 ~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 116 GTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp CCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred CCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 445567899999999999999999999999998765
No 27
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.56 E-value=1.7e-14 Score=134.37 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=115.2
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe--CC--EEEeecCCCCeeccccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ--DK--QYLHPIATGEFLDSPEFES 244 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~--dg--~~Lh~I~PGqFfGE~e~~s 244 (508)
+|+. +++++++.+.+ .++.++++||+.++.|| ++.+++++|++|.++++. +| .++..++||++|||
T Consensus 11 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~----- 80 (220)
T 2fmy_A 11 LLEV--LNSEEYSGVLK--EFREQRYSKKAILYTPN-TERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT----- 80 (220)
T ss_dssp HHHH--TTSGGGTTTGG--GSEEEEECTTCEEECTT-CSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES-----
T ss_pred hhhc--CCHHHHHHHHH--hhheeEeCCCCEEECCC-CCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC-----
Confidence 3454 47889999985 59999999999999999 788999999999999953 34 68899999999997
Q ss_pred ccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh---------hhhhhhhhccc
Q psy709 245 RANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK---------VGRRTGLISSE 315 (508)
Q Consensus 245 ~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k---------i~Ri~s~Ls~~ 315 (508)
.+++|++|.++|+++.+++++++++++++|.+...+... +++|+..++++ -+|++.+|...
T Consensus 81 ------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~Rl~~~L~~l 150 (220)
T 2fmy_A 81 ------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKV----LGDLLKNSLTIINGLVFKDARLRLAEFLVQA 150 (220)
T ss_dssp ------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHH----HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234569999999999999999999999999999877766 45555555544 28899988732
Q ss_pred ccccCC----eeeEeeeccccccc
Q psy709 316 IMTEKG----SHLDIRLPCVTSAI 335 (508)
Q Consensus 316 ~~~~~G----~~~dirLp~~~~~L 335 (508)
.. +.| ....+.+|.+.++|
T Consensus 151 ~~-~~g~~~~~~~~~~~~~t~~~l 173 (220)
T 2fmy_A 151 AM-DTGLKVPQGIKLELGLNTEEI 173 (220)
T ss_dssp HH-HHCEEETTEEEEECSSCHHHH
T ss_pred HH-HhCCCCCCcEEEeccCCHHHH
Confidence 22 111 23457778788877
No 28
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.56 E-value=1.8e-14 Score=132.91 Aligned_cols=112 Identities=13% Similarity=0.225 Sum_probs=100.7
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe-CCEEEeecCCCCeecccccccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ-DKQYLHPIATGEFLDSPEFESRAN 247 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~-dg~~Lh~I~PGqFfGE~e~~s~ps 247 (508)
+|+ ++++++++.+.. ..+.+.++|||.++.|| ++.+++++|++|.|++.. +|+++..++||++|||.++++
T Consensus 78 ~f~--~l~~~~l~~l~~--~~~~~~~~~ge~I~~~G-~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe~~~~~--- 149 (198)
T 2ptm_A 78 FFV--GADSNFVTRVVT--LLEFEVFQPADYVIQEG-TFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLT--- 149 (198)
T ss_dssp GGT--TCCHHHHHHHHH--HCEEEEECTTCEEECTT-SCCSEEEEEEECCEEEECTTSCEEEEECTTCEESCHHHHH---
T ss_pred chh--cCCHHHHHHHHH--hccceeeCCCCEEEECC-CcCcEEEEEEeCEEEEEecCCeEEEEecCCCEechHHHcC---
Confidence 466 469999999995 58999999999999999 788999999999999986 678999999999999999998
Q ss_pred cCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHH
Q psy709 248 SENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVL 289 (508)
Q Consensus 248 s~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~l 289 (508)
+...++|++|.++|+++.++++++.++++++|.+...+...
T Consensus 150 -~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~ 190 (198)
T 2ptm_A 150 -RERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEI 190 (198)
T ss_dssp -SSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred -CCccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHH
Confidence 45567789999999999999999999999999999876654
No 29
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.55 E-value=2e-14 Score=133.24 Aligned_cols=123 Identities=14% Similarity=0.239 Sum_probs=103.3
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeeccccccccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANS 248 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss 248 (508)
+|+ ++++++++.|.. ..+.+.++|||.++.|| ++.+.+++|++|.|++..++.....++||++|||.++++
T Consensus 79 ~f~--~l~~~~l~~l~~--~~~~~~~~~ge~I~~~g-~~~~~ly~I~~G~v~v~~~~g~~~~l~~G~~fGe~~~~~---- 149 (202)
T 3bpz_A 79 LFA--NADPNFVTAMLT--KLKFEVFQPGDYIIREG-TIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLT---- 149 (202)
T ss_dssp HHH--TSCHHHHHHHHH--HCEEEEECTTCEEECTT-SBCCEEEEEEECEEEEECTTSCCEEEETTCEECHHHHHH----
T ss_pred chh--cCCHHHHHHHHH--hCCceEECCCCEEEECC-CcCCeEEEEeccEEEEEECCCeEEEEcCCCEeccHHHhc----
Confidence 355 468999999995 58999999999999999 788999999999999987442233689999999999998
Q ss_pred CCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh
Q psy709 249 ENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK 304 (508)
Q Consensus 249 ~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k 304 (508)
+...++|++|.++|+++.++++++.++++++|.+...+... +++|+++++++
T Consensus 150 ~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~----~~~rl~~~~~r 201 (202)
T 3bpz_A 150 RGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETV----AIDRLDRIGKK 201 (202)
T ss_dssp CSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHH----HHHHHHHC---
T ss_pred CCCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHH----HHHHHHHhccC
Confidence 45567789999999999999999999999999999877655 77888777654
No 30
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.54 E-value=7.5e-14 Score=124.23 Aligned_cols=120 Identities=12% Similarity=0.103 Sum_probs=100.7
Q ss_pred CChhHHHHHHhhcCCC----CCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe--CC--EEEe
Q psy709 158 FDPDFEEVYTNLFEPF----KVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ--DK--QYLH 229 (508)
Q Consensus 158 f~~E~~~lY~~lF~pL----~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~--dg--~~Lh 229 (508)
-++++.+.+..+++.. ++++++++.+.. ..+.++++||+.++.+| ++.+.+|+|++|.++++. +| .++.
T Consensus 28 ~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~--~~~~~~~~~g~~i~~~G-~~~~~~y~i~~G~v~~~~~~~g~~~~~~ 104 (161)
T 3idb_B 28 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLD--AMFEKLVKEGEHVIDQG-DDGDNFYVIDRGTFDIYVKCDGVGRCVG 104 (161)
T ss_dssp CCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHH--HCEEEEECTTCEEECTT-SCCCEEEEEEESEEEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHH--hcceeEeCCCCEEEeCC-CCCcEEEEEEeCEEEEEEcCCCCeEEEE
Confidence 3555555544443222 368999999995 58999999999999999 788999999999999977 33 6889
Q ss_pred ecCCCCeecccccccccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHH
Q psy709 230 PIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLAN 284 (508)
Q Consensus 230 ~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~ 284 (508)
.++||++|||.+++. +..+++|++|.++|+++.+++++++++++++|.+++
T Consensus 105 ~~~~G~~fGe~~~~~----~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 105 NYDNRGSFGELALMY----NTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp EEESCCEECGGGGTC----CCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred EcCCCCEechHHHHc----CCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 999999999999998 455677899999999999999999999999998765
No 31
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.51 E-value=3.8e-14 Score=132.49 Aligned_cols=142 Identities=10% Similarity=0.110 Sum_probs=112.9
Q ss_pred CCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe--CC--EEEeecCCCCeecccccccccccCC
Q psy709 175 VSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ--DK--QYLHPIATGEFLDSPEFESRANSEN 250 (508)
Q Consensus 175 LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~--dg--~~Lh~I~PGqFfGE~e~~s~pss~~ 250 (508)
+++++++.+.+ .++.++++||+.++.|| ++.+++++|++|.++++. +| .++..++||++|| .
T Consensus 11 l~~~~~~~l~~--~~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG-----~------ 76 (222)
T 1ft9_A 11 LLSPDGETFFR--GFRSKIHAKGSLVCTGE-GDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC-----M------ 76 (222)
T ss_dssp HTSTTTTTTTT--TCEEEEECTTCEEECTT-CCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-----S------
T ss_pred CCHHHHHHHHh--hCcEEEECCCCEEECCC-CCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-----C------
Confidence 47888999984 59999999999999999 788999999999999953 44 6889999999999 2
Q ss_pred ceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh---------hhhhhhhhcccccccCC
Q psy709 251 KFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK---------VGRRTGLISSEIMTEKG 321 (508)
Q Consensus 251 ~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k---------i~Ri~s~Ls~~~~~~~G 321 (508)
.+++|++|.++|+++.++++++.++++++|.+...+... +++|+..++++ -+|++.+|..... +.|
T Consensus 77 ~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~----l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~-~~~ 151 (222)
T 1ft9_A 77 HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAI----LGRALTSCMRTIEDLMFHDIKQRIAGFFIDHAN-TTG 151 (222)
T ss_dssp CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHH----HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCB-CCC
T ss_pred CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HhC
Confidence 335679999999999999999999999999999877766 55555555544 2889998874322 111
Q ss_pred ----eeeEeeeccccccc
Q psy709 322 ----SHLDIRLPCVTSAI 335 (508)
Q Consensus 322 ----~~~dirLp~~~~~L 335 (508)
....+.+|.++++|
T Consensus 152 ~~~~~~~~~~~~~t~~~l 169 (222)
T 1ft9_A 152 RQTQGGVIVSVDFTVEEI 169 (222)
T ss_dssp SCC--CCCCEECCCHHHH
T ss_pred CCCCCcEEEeccCCHHHH
Confidence 12357777788877
No 32
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.48 E-value=1.5e-13 Score=126.26 Aligned_cols=127 Identities=12% Similarity=0.092 Sum_probs=99.9
Q ss_pred EEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccccccccCCceeEEEEEeccEEEE
Q psy709 191 TQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIM 265 (508)
Q Consensus 191 vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL 265 (508)
+++++||+.++.|| ++.+.+++|++|.+++++ +| .++..++||++||| ++++ +..+++|++|.+||+++
T Consensus 1 i~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~----~~~~~~~~~A~~~~~v~ 74 (195)
T 3b02_A 1 MKRFARKETIYLRG-EEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALE----GKAYRYTAEAMTEAVVQ 74 (195)
T ss_dssp CEEECTTCEEECTT-SBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGT----CSBCSSEEEESSSEEEE
T ss_pred CeEcCCCCEEECCC-CCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhC----CCCceeEEEECCcEEEE
Confidence 47899999999999 788999999999999986 33 68999999999999 9988 44567789999999999
Q ss_pred EEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhhhhhcccccccCCe----eeEeeecccc
Q psy709 266 YWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNKV---------GRRTGLISSEIMTEKGS----HLDIRLPCVT 332 (508)
Q Consensus 266 ~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ki---------~Ri~s~Ls~~~~~~~G~----~~dirLp~~~ 332 (508)
.+++++++ |.+...+... +++|+..+++++ +|++.+|..... +.|. .. +++|.++
T Consensus 75 ~i~~~~~~------p~~~~~~~~~----l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~-~~~~~~~~~~-~~~~~t~ 142 (195)
T 3b02_A 75 GLEPRAMD------HEALHRVARN----LARQMRRVQAYEAHLQTGELRARIARYLLFLAD-TPLSARDRQG-IYVTVSH 142 (195)
T ss_dssp EECGGGCC------HHHHHHHHHH----HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTT-STTEEEETTE-EEEECCH
T ss_pred EEcHHHcC------HHHHHHHHHH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HcCCCCCCCe-eeccCCH
Confidence 99999997 7777755544 566666666552 899998874322 1211 12 7777788
Q ss_pred ccc
Q psy709 333 SAI 335 (508)
Q Consensus 333 ~~L 335 (508)
++|
T Consensus 143 ~~l 145 (195)
T 3b02_A 143 EEI 145 (195)
T ss_dssp HHH
T ss_pred HHH
Confidence 777
No 33
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.47 E-value=2.4e-13 Score=132.66 Aligned_cols=119 Identities=18% Similarity=0.278 Sum_probs=105.4
Q ss_pred CCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCC------EEEeecCCCCeeccccccccccc
Q psy709 175 VSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDK------QYLHPIATGEFLDSPEFESRANS 248 (508)
Q Consensus 175 LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg------~~Lh~I~PGqFfGE~e~~s~pss 248 (508)
+++++.+++.. ..+.+.+++|+.++.|| ++.+.+|+|++|++++++.+ .++..++||++|||.++++
T Consensus 168 l~~~~l~~l~~--~~~~~~~~~g~~I~~~G-~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~---- 240 (299)
T 3shr_A 168 LPEEILSKLAD--VLEETHYENGEYIIRQG-ARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQG---- 240 (299)
T ss_dssp SCHHHHHHHTT--TCEEEEECTTCEEECTT-CEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECGGGGSS----
T ss_pred CCHHHHHHHHH--hccEEEECCCCEEEeCC-CCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeChHHHhC----
Confidence 58999999995 58999999999999999 78899999999999998743 6889999999999999998
Q ss_pred CCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh
Q psy709 249 ENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNK 304 (508)
Q Consensus 249 ~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~k 304 (508)
+...++|++|.++|+++.++++++.+++.++|.+...+.. .+++|++.+.++
T Consensus 241 ~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~----~l~~r~~~~~~~ 292 (299)
T 3shr_A 241 EDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYE----DAEAKAKYEAEA 292 (299)
T ss_dssp SEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHH----HHHHHHHHHHHH
T ss_pred CCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHH----HHhhhhhcchhh
Confidence 4456677999999999999999999999999999775554 478888888776
No 34
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.47 E-value=3.7e-13 Score=133.44 Aligned_cols=119 Identities=10% Similarity=0.087 Sum_probs=102.5
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeC---C-EEEeecCCCCeeccccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQD---K-QYLHPIATGEFLDSPEFES 244 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~d---g-~~Lh~I~PGqFfGE~e~~s 244 (508)
+|+. +++++++++.+ ..+.++++||++++.|| ++.+++|+|++|.+++++. | +++..++||++|||.+++.
T Consensus 20 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~G-~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~l~~ 94 (333)
T 4ava_A 20 VFQG--CPAEGLVSLAA--SVQPLRAAAGQVLLRQG-EPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLR 94 (333)
T ss_dssp GGTT--CCHHHHHHHHH--HCEEEEECTTCEEECTT-SBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHHHHH
T ss_pred hHhc--CCHHHHHHHHh--hCeEEEECCCCEEEeCC-CcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHHhcC
Confidence 5775 58999999995 58999999999999999 7889999999999999872 2 4889999999999999988
Q ss_pred ccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q psy709 245 RANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAM 301 (508)
Q Consensus 245 ~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~L 301 (508)
+...++|++|.++|+++.++++++++++ ++|.+...+.+. +++|+.+.
T Consensus 95 ----~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~----~~~~~~~~ 142 (333)
T 4ava_A 95 ----DSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRT----ARQRLAAF 142 (333)
T ss_dssp ----TCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHH----HHHHHHHH
T ss_pred ----CCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHH----HHHHHHhh
Confidence 4455667999999999999999999999 999999866655 55666544
No 35
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.45 E-value=4.9e-13 Score=125.25 Aligned_cols=109 Identities=12% Similarity=0.247 Sum_probs=98.1
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeeccccccccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANS 248 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss 248 (508)
+|+. +++++++.+.+ ..+.++++||+.++.|| ++.+++|+|++|.+++..+|+.+..++||++|||.+++.
T Consensus 14 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~G-~~~~~~y~i~~G~v~v~~~~~~~~~~~~g~~fGe~~l~~---- 84 (246)
T 3of1_A 14 LFNK--LDSDSKRLVIN--CLEEKSVPKGATIIKQG-DQGDYFYVVEKGTVDFYVNDNKVNSSGPGSSFGELALMY---- 84 (246)
T ss_dssp TTTT--SCHHHHHHHHT--TCEEEEECTTCEEECTT-CCCCEEEEEEECCEEEESTTSCCEEECTTCEECHHHHHH----
T ss_pred hhHh--CCHHHHHHHHH--hhceEEECCCCEEEecC-CCCCEEEEEEeeEEEEEECCEEEEecCCCCeeehhHHhc----
Confidence 3664 68999999995 58999999999999999 788999999999999999999899999999999999888
Q ss_pred CCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHH
Q psy709 249 ENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVM 286 (508)
Q Consensus 249 ~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf 286 (508)
+...++|++|.++|+++.++++++++++.++|.....+
T Consensus 85 ~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 122 (246)
T 3of1_A 85 NSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLM 122 (246)
T ss_dssp TCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHH
T ss_pred CCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHH
Confidence 45566789999999999999999999999999776643
No 36
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.44 E-value=4.8e-14 Score=121.48 Aligned_cols=111 Identities=10% Similarity=0.164 Sum_probs=91.9
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe--CC--EEEe--ecCCCCeeccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ--DK--QYLH--PIATGEFLDSPEF 242 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~--dg--~~Lh--~I~PGqFfGE~e~ 242 (508)
+|+. +++++++++.+ ..+.++++|||.++.|| ++.+++|+|++|++++.. +| .++. .++||++|||.++
T Consensus 13 ~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~G-~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l 87 (137)
T 1wgp_A 13 LFEN--MDERLLDAICE--RLKPCLFTEKSYLVREG-DPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELL 87 (137)
T ss_dssp GGGS--CCHHHHHHHHH--HCBCCCBCTTEEEECTT-SBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHHH
T ss_pred chhh--CCHHHHHHHHH--HheEEEeCCCCEEEeCC-CCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHHHH
Confidence 4665 58999999995 58999999999999999 778999999999999864 33 4556 9999999999985
Q ss_pred ---cc-ccccC-CceeEEEEEeccEEEEEEehHHHHHHHhcchHHHH
Q psy709 243 ---ES-RANSE-NKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLAN 284 (508)
Q Consensus 243 ---~s-~pss~-~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~ 284 (508)
++ .|... ...++|++|.++|+++.+++++++++++++|.+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 88 TWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 55 22111 03567899999999999999999999999998764
No 37
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.42 E-value=1.8e-12 Score=125.45 Aligned_cols=109 Identities=12% Similarity=0.171 Sum_probs=98.1
Q ss_pred cCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccC
Q psy709 170 FEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSE 249 (508)
Q Consensus 170 F~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~ 249 (508)
|+. +++++.+++.+ ..+.++++||++++.|| ++.+.+|+|++|++++..+|+.+..++||++|||.+++. +
T Consensus 47 f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~G-~~~~~~y~i~~G~v~~~~~g~~~~~l~~G~~fGe~~l~~----~ 117 (291)
T 2qcs_B 47 FSH--LDDNERSDIFD--AMFPVSFIAGETVIQQG-DEGDNFYVIDQGEMDVYVNNEWATSVGEGGSFGELALIY----G 117 (291)
T ss_dssp HHT--SCHHHHHHHHH--HCEEEEECTTCEEECTT-SBCCEEEEEEECCEEEEETTEEEEEECTTCEECGGGGTC----C
T ss_pred hhh--CCHHHHHHHHH--hccEEEECCCCEEEeCC-CCCceEEEEeeeEEEEEECCeEEEEcCCCCccchHHHhc----C
Confidence 553 58999999995 58999999999999999 788999999999999999999999999999999999888 4
Q ss_pred CceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHH
Q psy709 250 NKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMT 287 (508)
Q Consensus 250 ~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~ 287 (508)
..+++|++|.++|+++.++++++++++.++|.+...+.
T Consensus 118 ~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 155 (291)
T 2qcs_B 118 TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY 155 (291)
T ss_dssp CBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHH
Confidence 45677899999999999999999999999998876433
No 38
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.42 E-value=1.4e-12 Score=127.08 Aligned_cols=117 Identities=7% Similarity=0.136 Sum_probs=101.6
Q ss_pred ChhHHHHHHhh------cCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecC
Q psy709 159 DPDFEEVYTNL------FEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIA 232 (508)
Q Consensus 159 ~~E~~~lY~~l------F~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~ 232 (508)
++++.+..... |+. +++++++.|.+ ..+.++++||++++.|| ++.+.+|+|++|.++++++|+.+..+.
T Consensus 30 s~~~~~~i~~~l~~~~~f~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~G-~~~~~~yiI~~G~v~v~~~g~~~~~~~ 104 (299)
T 3shr_A 30 SERSKDLIKEAILDNDFMKN--LELSQIQEIVD--CMYPVEYGKDSCIIKEG-DVGSLVYVMEDGKVEVTKEGVKLCTMG 104 (299)
T ss_dssp CHHHHHHHHHHHHTCTTTTT--SCHHHHHHHHH--HCEEEEECTTCEEECTT-CBCCCEEEEEESCEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHhhCHHHHc--CCHHHHHHHHH--hcCeEEECCCCEEEcCC-CcCceEEEEEEEEEEEEECCEEEEEeC
Confidence 55555555443 664 58999999995 58899999999999999 788999999999999999999999999
Q ss_pred CCCeecccccccccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHH
Q psy709 233 TGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLAN 284 (508)
Q Consensus 233 PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~ 284 (508)
||++|||.++.. ....++|++|.++|+++.++|+++++++.++|....
T Consensus 105 ~G~~fGe~~ll~----~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~ 152 (299)
T 3shr_A 105 PGKVFGELAILY----NCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKH 152 (299)
T ss_dssp TTCEESCSGGGT----TTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCeeeHhHHhc----CCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHH
Confidence 999999999888 445567799999999999999999999999987654
No 39
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.42 E-value=7.9e-13 Score=114.14 Aligned_cols=101 Identities=10% Similarity=0.166 Sum_probs=87.8
Q ss_pred cCCCCCCHHHHHHHhcccccEEEEec-CCCeEEeecccccCeEEEEEeceEEEEe-CCEEEeecCCCCeecccccccccc
Q psy709 170 FEPFKVSRLQFKKLVNDQVIKTQTLQ-PGEAYAVQNITRTDRLALLLTGKAYVAQ-DKQYLHPIATGEFLDSPEFESRAN 247 (508)
Q Consensus 170 F~pL~LS~eqf~~Ll~c~~a~vr~lk-KGe~la~EGktp~d~L~lLLSGrVrVs~-dg~~Lh~I~PGqFfGE~e~~s~ps 247 (508)
|.. +++++++++.+ ..+.++++ ||+.++.|| ++.+.+|+|++|+++++. +|+. ..++||++||+.+++.
T Consensus 24 f~~--l~~~~~~~l~~--~~~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~g~~-~~l~~G~~fG~~~~~~--- 94 (134)
T 2d93_A 24 FAN--MTMSVRRELCS--VMIFEVVEQAGAIILEDG-QELDSWYVILNGTVEISHPDGKV-ENLFMGNSFGITPTLD--- 94 (134)
T ss_dssp TTS--SCHHHHHHHTT--TEEEEEECSSSCEEECTT-CEECEEEECCBSCEEEECSSSCE-EEECTTCEESCCSSSC---
T ss_pred hhh--CCHHHHHHHHH--hheEEEecCCCCEEEeCC-CCCCeEEEEEeCEEEEEcCCCcE-EEecCCCccChhHhcC---
Confidence 554 58999999994 68999999 999999999 778999999999999987 4555 7799999999999988
Q ss_pred cCCceeEEE-EEeccEEEEEEehHHHHHHHhcch
Q psy709 248 SENKFKVSI-IAHTTCRIMYWQRSTLEYLFVKET 280 (508)
Q Consensus 248 s~~~fqVTI-~A~EdcrVL~w~Re~L~~Ll~k~P 280 (508)
+...++++ +|.++|+++.++++++++++++.+
T Consensus 95 -~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 95 -KQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp -CEECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred -CCcceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 33445568 999999999999999999988765
No 40
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.36 E-value=1.3e-12 Score=135.51 Aligned_cols=170 Identities=13% Similarity=0.085 Sum_probs=123.1
Q ss_pred hCCCCCChhHHHHHHh------hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---
Q psy709 153 SRPVKFDPDFEEVYTN------LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ--- 223 (508)
Q Consensus 153 ~r~v~f~~E~~~lY~~------lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~--- 223 (508)
..|..-++++.+.... +|+ ++++++++.+.+ ..+.++++||++++.|| ++.+.+|+|++|.+++++
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~--~l~~~~~~~l~~--~~~~~~~~~g~~i~~~G-d~~~~~y~i~~G~v~v~~~~~ 101 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFE--KFHPNLLRQICL--CGYYENLEKGITLFRQG-DIGTNWYAVLAGSLDVKVSET 101 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTT--TCCHHHHHHHHH--HCEEEEECTTCEEECTT-SBCCEEEEEEESCEEEEECSS
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhh--cCCHHHHHHHHH--hceEEEECCCCEEEeCC-CCCCcEEEEEeeEEEEEEecC
Confidence 3444445444443332 355 458999999995 58899999999999999 788999999999999987
Q ss_pred CC----EEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q psy709 224 DK----QYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLY 299 (508)
Q Consensus 224 dg----~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~ 299 (508)
+| +++..++||++|||.+ +. +..+++|++|.++|+++.+++++++++++++|.+...+... +++|+.
T Consensus 102 ~g~~~~~~~~~~~~G~~fGe~~-l~----~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~----~~~~l~ 172 (469)
T 1o7f_A 102 SSHQDAVTICTLGIGTAFGESI-LD----NTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAP----PYGVME 172 (469)
T ss_dssp SCGGGCEEEEEECTTCEECGGG-GG----TCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSCT----TTSCSC
T ss_pred CCCCcceEEEEccCCCCcchhh-hC----CCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHHH----HHHHHH
Confidence 22 7999999999999988 76 45567789999999999999999999999999877654432 222222
Q ss_pred HHhh-----------------hhhhhhhhhccccc----ccCCeeeEeeecccccccC
Q psy709 300 AMNN-----------------KVGRRTGLISSEIM----TEKGSHLDIRLPCVTSAIK 336 (508)
Q Consensus 300 ~Ln~-----------------ki~Ri~s~Ls~~~~----~~~G~~~dirLp~~~~~L~ 336 (508)
.+++ --+|++.+|+.... .+......+++|.+++++.
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~rla~~Ll~~~~~~~~~~~~~~~~~~~~~t~~ela 230 (469)
T 1o7f_A 173 TGSNNDRIPDKENVPSEKILRAGKILRIAILSRAPHMIRDRKYHLKTYRQCCVGTELV 230 (469)
T ss_dssp C------------CCCSHHHHHHHHHHHHHHHHCGGGSEEEECSSCEEEEEEEHHHHH
T ss_pred hccCcccCCCcCCCchHHHHHHHHHHHHHHHhcCCcceeeccccceEeeeeccccchH
Confidence 2222 12566777663221 1112345788888888764
No 41
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.35 E-value=3.1e-12 Score=119.80 Aligned_cols=107 Identities=13% Similarity=0.255 Sum_probs=94.6
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCE-EEeecCCCCeecccccccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQ-YLHPIATGEFLDSPEFESRAN 247 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~-~Lh~I~PGqFfGE~e~~s~ps 247 (508)
+|+. +++++.+++.. ..+.+.++||+.++.|| ++.+.+|+|.+|.+++++++. .+..++||++|||.+++.
T Consensus 132 ~f~~--l~~~~l~~l~~--~~~~~~~~~g~~i~~~g-~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~~~~--- 203 (246)
T 3of1_A 132 VLKS--LTTYDRAKLAD--ALDTKIYQPGETIIREG-DQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLN--- 203 (246)
T ss_dssp GGTT--CCHHHHHHHHH--TCEEEEECTTCEEECTT-SBCCEEEEEEECEEEEEETTTEEEEEEETTCEECHHHHHH---
T ss_pred hhhc--CCHHHHHHHHH--hhheEEeCCCCEEEeCC-CcCCEEEEEEecEEEEEEcCCceEEEcCCCCcccHHHHhC---
Confidence 4664 58999999995 58999999999999999 788999999999999999664 899999999999999998
Q ss_pred cCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHH
Q psy709 248 SENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLAN 284 (508)
Q Consensus 248 s~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~ 284 (508)
+...++|++|.++|+++.++++++++++.++|.+..
T Consensus 204 -~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 204 -DLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp -TCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred -CCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 444566799999999999999999999999887643
No 42
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.34 E-value=1.6e-12 Score=119.75 Aligned_cols=130 Identities=14% Similarity=0.106 Sum_probs=99.6
Q ss_pred ccEEEEecCCCeEEeeccccc--CeEEEEEeceEEEEe---CC--EEEeecCCCCeecccccccccccCCceeEEEEEec
Q psy709 188 VIKTQTLQPGEAYAVQNITRT--DRLALLLTGKAYVAQ---DK--QYLHPIATGEFLDSPEFESRANSENKFKVSIIAHT 260 (508)
Q Consensus 188 ~a~vr~lkKGe~la~EGktp~--d~L~lLLSGrVrVs~---dg--~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~E 260 (508)
.++.++++||+.++.+| ++. +.+++|++|.++++. +| .++..++||++||+ +.+. +..++++++|.+
T Consensus 4 ~~~~~~~~~g~~i~~~g-~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~----~~~~~~~~~A~~ 77 (202)
T 2zcw_A 4 VRETVSFKAGDVILYPG-VPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALF----GQERIYFAEAAT 77 (202)
T ss_dssp --CCEEECTTCEEECSB-SCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHH----TCCBCSEEEESS
T ss_pred cceEEEECCCCEEECCC-CCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcC----CCCcceEEEEcc
Confidence 57789999999999999 788 999999999999986 34 68899999999999 7776 455777899999
Q ss_pred cEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhh---------hhhhhhhcccccccCCe---eeEeee
Q psy709 261 TCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNNKV---------GRRTGLISSEIMTEKGS---HLDIRL 328 (508)
Q Consensus 261 dcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ki---------~Ri~s~Ls~~~~~~~G~---~~dirL 328 (508)
||+++.+ +++++ |.+...+... +++|+..+++++ +|++.+|..... +.|. ...+.+
T Consensus 78 ~~~v~~i-~~~~~------p~~~~~~~~~----l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~-~~~~~~~~~~~~~ 145 (202)
T 2zcw_A 78 DVRLEPL-PENPD------PELLKDLAQH----LSQGLAEAYRRIERLATQRLKNRMAAALLELSE-TPLAHEEEGKVVL 145 (202)
T ss_dssp CEEEEEC-CSSCC------HHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHTT-STTEEEETTEEEE
T ss_pred cEEEEEE-hHhcC------HHHHHHHHHH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCCcEEcc
Confidence 9999999 98875 7776655444 556666666552 899998874322 2221 235677
Q ss_pred ccccccc
Q psy709 329 PCVTSAI 335 (508)
Q Consensus 329 p~~~~~L 335 (508)
|.++++|
T Consensus 146 ~~t~~~l 152 (202)
T 2zcw_A 146 KATHDEL 152 (202)
T ss_dssp ECCHHHH
T ss_pred CCCHHHH
Confidence 7777777
No 43
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.32 E-value=7.2e-12 Score=128.58 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=97.7
Q ss_pred cCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccC
Q psy709 170 FEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSE 249 (508)
Q Consensus 170 F~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~ 249 (508)
|+. +++++++.|.+ ..+.+.++||++++.|| ++.+.+|+|++|.++++++|+.+..++||++|||.+++. .
T Consensus 138 F~~--L~~~~l~~l~~--~~~~~~~~~ge~I~~~G-d~~~~~yiI~~G~v~v~~~~~~v~~l~~G~~fGe~all~----~ 208 (381)
T 4din_B 138 FAH--LDDNERSDIFD--AMFPVTHIAGETVIQQG-NEGDNFYVVDQGEVDVYVNGEWVTNISEGGSFGELALIY----G 208 (381)
T ss_dssp SSS--CCHHHHHHHHH--HCEEEECCTTCBSSCTT-SBCCEEEECSSSEEEEEETTEEEEEEESSCCBCGGGGTS----C
T ss_pred hhc--CCHHHHHHHHH--hceEEEECCCCEEEeCC-CCCCeEEEEEeeEEEEEECCeEeeeCCCCCEEEchHHhc----C
Confidence 664 58999999996 48999999999999999 788999999999999999999999999999999999998 4
Q ss_pred CceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHH
Q psy709 250 NKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANV 285 (508)
Q Consensus 250 ~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~l 285 (508)
....+|++|.++|+++.++|+++++++.++|.+.+.
T Consensus 209 ~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~ 244 (381)
T 4din_B 209 TPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRK 244 (381)
T ss_dssp CBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHH
Confidence 455677999999999999999999999999988763
No 44
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.29 E-value=2e-11 Score=118.09 Aligned_cols=107 Identities=12% Similarity=0.246 Sum_probs=94.4
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CC---EEEeecCCCCeeccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DK---QYLHPIATGEFLDSPEF 242 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg---~~Lh~I~PGqFfGE~e~ 242 (508)
+|+. +++++...+.. ..+.+.+++|+.++.|| ++.+.+|+|++|++++.+ +| ..+..++||++|||.++
T Consensus 164 lf~~--l~~~~~~~l~~--~~~~~~~~~g~~i~~~g-~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~l 238 (291)
T 2qcs_B 164 ILES--LDKWERLTVAD--ALEPVQFEDGQKIVVQG-EPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIAL 238 (291)
T ss_dssp GGTT--CCHHHHHHHHH--HCEEEEECTTCEEECTT-SCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSGGG
T ss_pred Hhhh--CCHHHHHHHHh--hcEEEEECCCCEEEeCC-ccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHHHH
Confidence 4554 58899999985 58999999999999999 788999999999999986 22 68899999999999999
Q ss_pred ccccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHH
Q psy709 243 ESRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLAN 284 (508)
Q Consensus 243 ~s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~ 284 (508)
+. +...++|++|.++|+++.++++++++++.++|.+..
T Consensus 239 l~----~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~ 276 (291)
T 2qcs_B 239 LM----NRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILK 276 (291)
T ss_dssp TC----CCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHT
T ss_pred cC----CCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHH
Confidence 98 445677899999999999999999999999998665
No 45
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.25 E-value=5.8e-13 Score=134.95 Aligned_cols=118 Identities=17% Similarity=0.265 Sum_probs=0.0
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeeccccccccccc
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANS 248 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss 248 (508)
+|+ ++++++.+++.+ ..+.++++|||.+..|| ++.+++++|++|++++...+ ...++|||++||.++++
T Consensus 235 lf~--~ls~~~l~~l~~--~~~~~~~~~ge~I~~~G-~~~~~ly~I~~G~v~v~~~~--~~~l~~G~~fGe~~~l~---- 303 (355)
T 3beh_A 235 LFQ--KLGPAVLVEIVR--ALRARTVPAGAVICRIG-EPGDRMFFVVEGSVSVATPN--PVELGPGAFFGEMALIS---- 303 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc--cCCHHHHHHHHH--hceEEEECCCCEEEeCC-CcCceEEEEEeeEEEEEECC--eeEECCCCEEeehHHhC----
Confidence 355 468999999984 68999999999999999 77899999999999999876 46899999999999988
Q ss_pred CCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q psy709 249 ENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAM 301 (508)
Q Consensus 249 ~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~L 301 (508)
+...++|++|.++|+++.+++++++++++++|.+...+.+. +++|+++.
T Consensus 304 ~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~----l~~rl~~~ 352 (355)
T 3beh_A 304 GEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKT----ALERRGAA 352 (355)
T ss_dssp -----------------------------------------------------
T ss_pred CCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHH----HHHHHHhh
Confidence 44556779999999999999999999999999999877654 55665544
No 46
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.23 E-value=6e-11 Score=123.48 Aligned_cols=106 Identities=12% Similarity=0.130 Sum_probs=93.9
Q ss_pred cCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeC----CEEEeecCCCCeecccccccc
Q psy709 170 FEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQD----KQYLHPIATGEFLDSPEFESR 245 (508)
Q Consensus 170 F~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~d----g~~Lh~I~PGqFfGE~e~~s~ 245 (508)
|+. +++++++.|.+ ..+.+.++||++++.|| ++.+.+|+|++|.++|+.+ ++++..+.||++|||.+++.
T Consensus 153 F~~--L~~~~l~~l~~--~~~~~~~~~Ge~I~~qG-d~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~~G~~fGe~all~- 226 (416)
T 3tnp_B 153 FKN--LDPEQMSQVLD--AMFEKLVKEGEHVIDQG-DDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMY- 226 (416)
T ss_dssp HHT--CCHHHHHHHHH--HCEEEEECTTCEEECTT-SCCCEEEEEEECEEEEEEECSSCEEEEEEEESCCEECGGGGTS-
T ss_pred Hhc--CCHHHHHHHHH--hcEEEEeCCCCEEEeCC-CCCceEEEEEeeEEEEEEecCCCEEEEEEecCCCEEeeHHHhc-
Confidence 554 58999999995 58899999999999999 7889999999999999873 37899999999999999998
Q ss_pred cccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHH
Q psy709 246 ANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLAN 284 (508)
Q Consensus 246 pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~ 284 (508)
.....+|++|.++|+++.++|+++++++.++|....
T Consensus 227 ---~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~ 262 (416)
T 3tnp_B 227 ---NTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKR 262 (416)
T ss_dssp ---CCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHS
T ss_pred ---CCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHH
Confidence 444566799999999999999999999999887754
No 47
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.22 E-value=3.2e-11 Score=124.98 Aligned_cols=120 Identities=13% Similarity=0.176 Sum_probs=97.7
Q ss_pred ChhHHHHHHhh-----cCCCCCCHHHHHHHhcccccE-EEEecCCCeEEeecccccCeEEEEEeceEEEEeCC-EEEeec
Q psy709 159 DPDFEEVYTNL-----FEPFKVSRLQFKKLVNDQVIK-TQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDK-QYLHPI 231 (508)
Q Consensus 159 ~~E~~~lY~~l-----F~pL~LS~eqf~~Ll~c~~a~-vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg-~~Lh~I 231 (508)
+++.+.+.+.+ |.. +++++.+++.+. .+ .+.++||++++.|| ++.+.+|+|++|.++|++++ .++..+
T Consensus 329 ~~~~~~~~~~l~~~~~f~~--l~~~~~~~l~~~--~~~~~~~~~g~~i~~~G-~~~~~~yiI~~G~v~v~~~~~~~~~~l 403 (469)
T 1o7f_A 329 VDDLEIIYDELLHIKALSH--LSTTVKRELAGV--LIFESHAKGGTVLFNQG-EEGTSWYIILKGSVNVVIYGKGVVCTL 403 (469)
T ss_dssp HHHHHHHHHHHTTCGGGTT--SCHHHHHHHHHH--CEEEEECSTTCEEECTT-SCCCEEEEEEESEEEEEETTTEEEEEE
T ss_pred HHHHHHHHHHHhcCHhhhh--CCHHHHHHHHHH--hheeeEecCCCEEEeCC-CcCCeEEEEEEeEEEEEEcCCeeEEEe
Confidence 34555555443 554 689999999853 55 46999999999999 78899999999999999876 489999
Q ss_pred CCCCeecccccccccccCCceeEEEEEec-cEEEEEEehHHHHHHHhcchHHHHHHH
Q psy709 232 ATGEFLDSPEFESRANSENKFKVSIIAHT-TCRIMYWQRSTLEYLFVKETYLANVMT 287 (508)
Q Consensus 232 ~PGqFfGE~e~~s~pss~~~fqVTI~A~E-dcrVL~w~Re~L~~Ll~k~P~L~~lf~ 287 (508)
+||++|||.++++ +...++|++|.+ +|+++.++++++++++.++|.+...+.
T Consensus 404 ~~G~~fGe~~ll~----~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~ 456 (469)
T 1o7f_A 404 HEGDDFGKLALVN----DAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLK 456 (469)
T ss_dssp ETTCEECGGGGTC----CSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-----
T ss_pred cCCCEEEEehhhc----CCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 9999999999998 445677899998 799999999999999999999988665
No 48
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.17 E-value=7.2e-11 Score=122.91 Aligned_cols=122 Identities=15% Similarity=0.165 Sum_probs=95.3
Q ss_pred hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeC---------C--EEEeecCCCCee
Q psy709 169 LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQD---------K--QYLHPIATGEFL 237 (508)
Q Consensus 169 lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~d---------g--~~Lh~I~PGqFf 237 (508)
+|+. +++++.+++.. ..+.+.+++|++++.|| ++.+.+|+|++|.++|++. | .++..+++|++|
T Consensus 274 lf~~--Ls~~el~~L~~--~l~~~~~~~Ge~I~~eG-d~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~f 348 (416)
T 3tnp_B 274 FLKS--LEVSERLKVVD--VIGTKVYNDGEQIIAQG-DLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYF 348 (416)
T ss_dssp GGTT--CCHHHHHHHHH--HCEEEEECTTCEEECTT-SCCCEEEEEEEEEEEEECC------------CEEEEECTTCEE
T ss_pred Hhhc--CCHHHHHHHHh--hceEEEECCCCEEEeCC-CcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCEe
Confidence 5665 58999999995 58999999999999999 7889999999999999863 2 478999999999
Q ss_pred cccccccccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhh
Q psy709 238 DSPEFESRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYAMNN 303 (508)
Q Consensus 238 GE~e~~s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~lf~~lIgkDLa~KL~~Ln~ 303 (508)
||.+++. +...++|++|.++|+++.++++++++++..+|.+...... .+.+++.++..
T Consensus 349 GE~all~----~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~----~~~~~L~~~~~ 406 (416)
T 3tnp_B 349 GELALVT----NKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIA----TYEEQLVALFG 406 (416)
T ss_dssp SGGGGTC----CSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC-----------------
T ss_pred cHHHHhC----CCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHH----HHHHHHHHHhC
Confidence 9999998 4456678999999999999999999999999987663332 34444444433
No 49
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.12 E-value=9.3e-11 Score=120.32 Aligned_cols=106 Identities=12% Similarity=0.207 Sum_probs=92.9
Q ss_pred cCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeC------CEEEeecCCCCeecccccc
Q psy709 170 FEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQD------KQYLHPIATGEFLDSPEFE 243 (508)
Q Consensus 170 F~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~d------g~~Lh~I~PGqFfGE~e~~ 243 (508)
|+. +++++..++.. ..+.+.+++|++++.|| ++.+.+|+|++|+++|++. ..++..++||++|||.+++
T Consensus 256 f~~--Ls~~el~~l~~--~~~~~~~~~ge~I~~eG-d~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~all 330 (381)
T 4din_B 256 LES--LEKWERLTVAD--ALEPVQFEDGEKIVVQG-EPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALL 330 (381)
T ss_dssp TTT--CCTTHHHHHHT--TCBCCCBCSSCBSSCTT-SBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTTGGG
T ss_pred HHh--ccHHHHHHHHH--hhhhccCCCCCEEEeCC-CcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechHHHh
Confidence 554 57888999984 57889999999999999 7789999999999999873 2478999999999999999
Q ss_pred cccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHHHH
Q psy709 244 SRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLAN 284 (508)
Q Consensus 244 s~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L~~ 284 (508)
. +...++|++|.++|+++.++++++++++.++|.+..
T Consensus 331 ~----~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~ 367 (381)
T 4din_B 331 L----NRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILK 367 (381)
T ss_dssp S----CCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHH
T ss_pred C----CCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHH
Confidence 8 445567799999999999999999999999997765
No 50
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.12 E-value=1.6e-10 Score=128.52 Aligned_cols=116 Identities=14% Similarity=0.206 Sum_probs=98.8
Q ss_pred hhHHHHHHhh-----cCCCCCCHHHHHHHhcccccE-EEEecCCCeEEeecccccCeEEEEEeceEEEEeCC-EEEeecC
Q psy709 160 PDFEEVYTNL-----FEPFKVSRLQFKKLVNDQVIK-TQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDK-QYLHPIA 232 (508)
Q Consensus 160 ~E~~~lY~~l-----F~pL~LS~eqf~~Ll~c~~a~-vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg-~~Lh~I~ 232 (508)
++.+.+++.+ |+. +++++++.+.+ ..+ .+.++||+.++.|| ++.+.+++|++|++++++.| .+++.++
T Consensus 25 ~d~~~l~~~L~~~~lF~~--Ls~~~l~~L~~--~~~~~~~~~kGe~I~~eG-d~~~~lyiIlsG~V~v~~~g~~il~~l~ 99 (694)
T 3cf6_E 25 DDLEIIYDELLHIKALSH--LSTTVKRELAG--VLIFESHAKGGTVLFNQG-EEGTSWYIILKGSVNVVIYGKGVVCTLH 99 (694)
T ss_dssp HHHHHHHHHHTTCGGGTT--SCHHHHHHHHT--TCEEEEECSTTCEEECTT-SBCCEEEEEEESEEEEEETTTEEEEEEE
T ss_pred HHHHHHHHHHHcChhhcc--CCHHHHHHHHH--hcceEEEECCCCEEECCC-CcCCeEEEEEEEEEEEEEeCCEEEEEeC
Confidence 4444454433 554 58999999995 356 78999999999999 78899999999999999866 5999999
Q ss_pred CCCeecccccccccccCCceeEEEEEec-cEEEEEEehHHHHHHHhcchHHHH
Q psy709 233 TGEFLDSPEFESRANSENKFKVSIIAHT-TCRIMYWQRSTLEYLFVKETYLAN 284 (508)
Q Consensus 233 PGqFfGE~e~~s~pss~~~fqVTI~A~E-dcrVL~w~Re~L~~Ll~k~P~L~~ 284 (508)
||++|||.+++. +..+++|++|.| +|+++.+++++++++++++|.+..
T Consensus 100 ~Gd~fGe~al~~----~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~ 148 (694)
T 3cf6_E 100 EGDDFGKLALVN----DAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTV 148 (694)
T ss_dssp TTCEECHHHHHH----TCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCE
T ss_pred CCCEeehHHHhC----CCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHH
Confidence 999999988887 456778899999 599999999999999999998854
No 51
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=98.89 E-value=1.3e-08 Score=116.27 Aligned_cols=120 Identities=14% Similarity=0.204 Sum_probs=100.5
Q ss_pred hhCC-CCCChhHHHHHHh-----hcCCCCCCHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe--
Q psy709 152 QSRP-VKFDPDFEEVYTN-----LFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ-- 223 (508)
Q Consensus 152 ~~r~-v~f~~E~~~lY~~-----lF~pL~LS~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~-- 223 (508)
+++| -+=++|.+.||+. +|+. +++.++++|.++ .+.+.+++|++++.|| ++.|++|+|++|+|.|..
T Consensus 26 ~K~p~~Rt~edl~~I~~~Lk~~~~f~~--l~~~~l~~l~~~--m~ye~~~~Ge~IfrqG-d~gd~fYIIlsGsV~V~i~~ 100 (999)
T 4f7z_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEK--FHPNLLRQICLC--GYYENLEKGITLFRQG-DIGTNWYAVLAGSLDVKVSE 100 (999)
T ss_dssp HSCSSSCCHHHHHHHHHHHTTCTTTTT--CCHHHHHHHHHH--CEEEEECTTCEEECTT-SCCCEEEEEEESEEEEEECS
T ss_pred cCCcccCCHHHHHHHHHHHhCCHhhhc--CCHHHHHHHHhh--eEEEEECCCCEEEcCC-CcCCEEEEEEeeEEEEEEec
Confidence 3444 4556888888865 5885 589999999964 8999999999999999 889999999999999975
Q ss_pred -----CCEEEeecCCCCeeccccccc-ccccCCceeEEEEEeccEEEEEEehHHHHHHHhcchHH
Q psy709 224 -----DKQYLHPIATGEFLDSPEFES-RANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYL 282 (508)
Q Consensus 224 -----dg~~Lh~I~PGqFfGE~e~~s-~pss~~~fqVTI~A~EdcrVL~w~Re~L~~Ll~k~P~L 282 (508)
++..+..+.||+.||| +... .|. .||+.|.++|+++.++|++++....++|..
T Consensus 101 ~~~~~~~~~v~~l~~G~sFGE-all~n~pR-----taTv~a~~~s~l~~l~r~~F~~i~~~~~e~ 159 (999)
T 4f7z_A 101 TSSHQDAVTICTLGIGTAFGE-SILDNTPR-----HATIVTRESSELLRIEQEDFKALWEKYRQY 159 (999)
T ss_dssp SSCTTSCEEEEEEETTCEECG-GGGGTCCC-----SSEEEESSSEEEEEEEHHHHHHHHHHHHHH
T ss_pred CCCCCCceeEEEecCCcchhh-hhccCCCc-----ceEEEeccceEEEEEEHHHHHHHHHhChHH
Confidence 3478899999999999 5555 443 467999999999999999999999887754
No 52
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=98.54 E-value=7.2e-07 Score=101.99 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=90.9
Q ss_pred hhCCCC-CChhHHHHHHh-----hcCCCCCCHHHHHHHhcccccEEE-EecCCCeEEeecccccCeEEEEEeceEEEEeC
Q psy709 152 QSRPVK-FDPDFEEVYTN-----LFEPFKVSRLQFKKLVNDQVIKTQ-TLQPGEAYAVQNITRTDRLALLLTGKAYVAQD 224 (508)
Q Consensus 152 ~~r~v~-f~~E~~~lY~~-----lF~pL~LS~eqf~~Ll~c~~a~vr-~lkKGe~la~EGktp~d~L~lLLSGrVrVs~d 224 (508)
+..|.. -+++.+.+++. .|+. ++..+.++|.+ ....+ -+++|++++.|| ++.+++|+|++|.|+|+++
T Consensus 321 ~k~~~~rt~ed~e~l~e~L~~i~~f~~--Ls~~v~r~L~~--~l~~~~~~kaGtvI~rQG-E~gds~YIIlsG~V~V~~~ 395 (999)
T 4f7z_A 321 RKPPGQRTVDDLEIIYDELLHIKALSH--LSTTVKRELAG--VLIFESHAKGGTVLFNQG-EEGTSWYIILKGSVNVVIY 395 (999)
T ss_dssp TSCGGGCCHHHHHHHHHHHTTCGGGTT--SCHHHHHHHTT--TCEEEEESSTTCEEECTT-SBCCEEEEEEESEEEEEET
T ss_pred cCCcccccHHHHHHHHHHHHhhHHHhc--CCHHHHHHHHH--hhhhheeccCCCEEEeCC-CcCCeEEEEEeeEEEEEEc
Confidence 333433 34555666654 3664 58899999885 34444 468899999999 7889999999999999986
Q ss_pred C-EEEeecCCCCeecccccccccccCCceeEEEEEec-cEEEEEEehHHHHHHHhc
Q psy709 225 K-QYLHPIATGEFLDSPEFESRANSENKFKVSIIAHT-TCRIMYWQRSTLEYLFVK 278 (508)
Q Consensus 225 g-~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~E-dcrVL~w~Re~L~~Ll~k 278 (508)
+ ..+..+++||.|||.+..+ +..-.+||.|.+ ||.+++++|+++.+++.+
T Consensus 396 ~~~~v~~L~~Gd~FGElALL~----~~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 396 GKGVVCTLHEGDDFGKLALVN----DAPRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp TTEEEEEEETTCEECGGGGTC----SCBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred CCcceEEecCCCcccchhhcc----CCCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 5 5788899999999999998 333345699987 599999999999987754
No 53
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=91.80 E-value=0.55 Score=44.53 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=55.8
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEe
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQ 268 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~ 268 (508)
....++++|+.+-.+- .+.+.+.+|++|+++++.+|+. +.+.|||.+--|.=.. =.+.|.++|+++.+.
T Consensus 39 ~~~~~~~~G~~~~~h~-h~~~~~~~Vl~G~~~~~i~~~~-~~l~~Gd~~~~p~~~~---------H~~~a~~~~~~l~i~ 107 (227)
T 3rns_A 39 ISLFSLAKDEEITAEA-MLGNRYYYCFNGNGEIFIENNK-KTISNGDFLEITANHN---------YSIEARDNLKLIEIG 107 (227)
T ss_dssp EEEEEECTTCEEEECS-CSSCEEEEEEESEEEEEESSCE-EEEETTEEEEECSSCC---------EEEEESSSEEEEEEE
T ss_pred EEEEEECCCCccCccc-cCCCEEEEEEeCEEEEEECCEE-EEECCCCEEEECCCCC---------EEEEECCCcEEEEEE
Confidence 3466799999998887 6789999999999999999877 5789998876433221 237789999999884
Q ss_pred hH
Q psy709 269 RS 270 (508)
Q Consensus 269 Re 270 (508)
.+
T Consensus 108 ~~ 109 (227)
T 3rns_A 108 EK 109 (227)
T ss_dssp EC
T ss_pred ee
Confidence 43
No 54
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=89.87 E-value=1.7 Score=43.26 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=59.4
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeec-CCCCeeccc--ccccccccCCceeEEEEEeccEEEE
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPI-ATGEFLDSP--EFESRANSENKFKVSIIAHTTCRIM 265 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I-~PGqFfGE~--e~~s~pss~~~fqVTI~A~EdcrVL 265 (508)
..+.+|++||.+..+-.+ -|..-++++|+++|+.+|+....+ +..+.|++. ...-.|. +. .|+++|.+++++.
T Consensus 31 f~~~~L~~Ge~~~~~~~~-~E~~iv~l~G~~~V~~~g~~~~~~g~R~svF~~~~p~~lYvp~--g~-~v~i~a~~~~~~~ 106 (270)
T 2qjv_A 31 FDVWQLXAGESITLPSDE-RERCLVLVAGLASVXAADSFFYRIGQRMSPFERIPAYSVYLPH--HT-EAXVTAETDLELA 106 (270)
T ss_dssp EEEEEECTTCEEEECCSS-EEEEEEEEESCEEEEETTEEEEEECCCSSGGGCSCCCEEEECS--SC-CEEEEESSSEEEE
T ss_pred EEEEEecCCCEEEecCCC-cEEEEEEecceEEEEECCEEEeccccccccccCCCCcEEEECC--CC-EEEEEecCCceEE
Confidence 678999999999988733 378888999999999999877664 456777764 2222232 22 6899999999998
Q ss_pred EEehHH
Q psy709 266 YWQRST 271 (508)
Q Consensus 266 ~w~Re~ 271 (508)
.-+-..
T Consensus 107 v~sAp~ 112 (270)
T 2qjv_A 107 VCSAPG 112 (270)
T ss_dssp EEEEEC
T ss_pred EEeeec
Confidence 876543
No 55
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=89.80 E-value=1.8 Score=36.45 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=48.3
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEE
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMY 266 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~ 266 (508)
....++++|+.+-..- .+.+.+.++++|++++..+|+. +.+.|||.+-=|.-.. . ++.+.++++++.
T Consensus 38 v~~~~l~~G~~~~~H~-H~~~e~~~Vl~G~~~~~i~~~~-~~l~~Gd~i~ip~~~~-------H--~~~~~~~~~~~~ 104 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHS-VAGPSTIQCLEGEVEIGVDGAQ-RRLHQGDLLYLGAGAA-------H--DVNAITNTSLLV 104 (114)
T ss_dssp EEEEEECTTCEEEEEC-CSSCEEEEEEESCEEEEETTEE-EEECTTEEEEECTTCC-------E--EEEESSSEEEEE
T ss_pred EEEEEECCCCccCcee-CCCcEEEEEEECEEEEEECCEE-EEECCCCEEEECCCCc-------E--EEEeCCCcEEEE
Confidence 3456789999887765 5568999999999999999985 5799998876433222 1 255566766554
No 56
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=87.20 E-value=2.3 Score=34.99 Aligned_cols=67 Identities=19% Similarity=0.288 Sum_probs=44.7
Q ss_pred EEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEe
Q psy709 191 TQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQ 268 (508)
Q Consensus 191 vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~ 268 (508)
..++++|+.+.... .+.+.+.++++|++++..+|+.. .+.|||.+-=+.=. ... +.+.++++++.+-
T Consensus 42 ~~~~~~g~~~~~H~-h~~~e~~~vl~G~~~~~i~~~~~-~l~~Gd~i~i~~~~-------~H~--~~~~~~~~~~~i~ 108 (114)
T 2ozj_A 42 LFSFADGESVSEEE-YFGDTLYLILQGEAVITFDDQKI-DLVPEDVLMVPAHK-------IHA--IAGKGRFKMLQIT 108 (114)
T ss_dssp EEEEETTSSCCCBC-CSSCEEEEEEEEEEEEEETTEEE-EECTTCEEEECTTC-------CBE--EEEEEEEEEEEEE
T ss_pred EEEECCCCccccEE-CCCCeEEEEEeCEEEEEECCEEE-EecCCCEEEECCCC-------cEE--EEeCCCcEEEEEE
Confidence 34467777665444 45678999999999999998754 68999876422111 111 3445788887654
No 57
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=86.58 E-value=3.7 Score=33.55 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=45.9
Q ss_pred EEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEE
Q psy709 190 KTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYW 267 (508)
Q Consensus 190 ~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w 267 (508)
...++++|..+-..- .+.+.+.++++|++++..+|+. +.+.|||.+--+.-.. . .+.+.++++++.+
T Consensus 43 ~~~~~~~g~~~~~H~-H~~~e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~ip~~~~-------H--~~~~~~~~~~~~v 109 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHS-SPGDAMVTILSGLAEITIDQET-YRVAEGQTIVMPAGIP-------H--ALYAVEAFQMLLV 109 (115)
T ss_dssp EEEEECTTCEEEEEC-CSSEEEEEEEESEEEEEETTEE-EEEETTCEEEECTTSC-------E--EEEESSCEEEEEE
T ss_pred EEEEECCCCccCCEE-CCCcEEEEEEeCEEEEEECCEE-EEECCCCEEEECCCCC-------E--EEEECCCceEEEE
Confidence 455688888766544 3457999999999999999876 4789998875322211 1 2445567777654
No 58
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=85.29 E-value=6.7 Score=33.51 Aligned_cols=69 Identities=20% Similarity=0.338 Sum_probs=48.2
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEe-ccEEEEEE
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAH-TTCRIMYW 267 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~-EdcrVL~w 267 (508)
....++++|+.+...- +.+++.+|++|++++..+|+.. .++|||.+-=|. +... +..+. ++++++.+
T Consensus 42 ~~~~~~~pG~~~~~H~--~~~E~~~Vl~G~~~~~~~g~~~-~l~~GD~v~ip~-------g~~H--~~~~~~~~~~~l~v 109 (119)
T 3lwc_A 42 IGYGRYAPGQSLTETM--AVDDVMIVLEGRLSVSTDGETV-TAGPGEIVYMPK-------GETV--TIRSHEEGALTAYV 109 (119)
T ss_dssp EEEEEECTTCEEEEEC--SSEEEEEEEEEEEEEEETTEEE-EECTTCEEEECT-------TCEE--EEEEEEEEEEEEEE
T ss_pred EEEEEECCCCCcCccC--CCCEEEEEEeCEEEEEECCEEE-EECCCCEEEECC-------CCEE--EEEcCCCCeEEEEE
Confidence 4667899998776543 5689999999999999988765 699998875221 1112 23333 67888776
Q ss_pred eh
Q psy709 268 QR 269 (508)
Q Consensus 268 ~R 269 (508)
-.
T Consensus 110 ~~ 111 (119)
T 3lwc_A 110 TY 111 (119)
T ss_dssp EE
T ss_pred EC
Confidence 54
No 59
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=83.39 E-value=8.4 Score=30.11 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=36.7
Q ss_pred cEEEEecCCCeEEeecccc-cCeEEEEEeceEEEEeCCEEEeecCCCCeecc
Q psy709 189 IKTQTLQPGEAYAVQNITR-TDRLALLLTGKAYVAQDKQYLHPIATGEFLDS 239 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp-~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE 239 (508)
....++++|+..-..- .+ .+.+.++++|++++..+|+. +.+.+||.+--
T Consensus 30 ~~~~~~~pg~~~~~H~-H~~~~e~~~v~~G~~~~~~~~~~-~~l~~Gd~~~i 79 (105)
T 1v70_A 30 YDLYALLPGQAQKVHV-HEGSDKVYYALEGEVVVRVGEEE-ALLAPGMAAFA 79 (105)
T ss_dssp EEEEEECTTCEEEEEC-CSSCEEEEEEEESCEEEEETTEE-EEECTTCEEEE
T ss_pred EEEEEECCCCcCCccC-CCCCcEEEEEEeCEEEEEECCEE-EEeCCCCEEEE
Confidence 3456788998875443 23 35799999999999998865 46899988753
No 60
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=82.60 E-value=5.4 Score=33.18 Aligned_cols=50 Identities=10% Similarity=0.250 Sum_probs=39.8
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeeccc
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSP 240 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~ 240 (508)
....++++|...-..- .+.+.+.+|++|++++..+|+. +.+.+||.+--+
T Consensus 43 ~~~~~~~pg~~~~~H~-H~~~e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~ip 92 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHE-HPHEQAGVMLEGTLELTIGEET-RVLRPGMAYTIP 92 (126)
T ss_dssp EEEEEECTTCEEEEEC-CSSEEEEEEEEECEEEEETTEE-EEECTTEEEEEC
T ss_pred EEEEEECCCCcCCCcc-CCCceEEEEEEeEEEEEECCEE-EEeCCCCEEEEC
Confidence 4567789999886655 4458999999999999999876 578999887543
No 61
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=81.61 E-value=7.4 Score=31.71 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=46.3
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEE
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYW 267 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w 267 (508)
....++++|...-.-- .+.+.+.++++|++++..+|+. +.+.|||.+--+.-.. . ++.+.++++++.+
T Consensus 36 ~~~~~~~pg~~~~~H~-H~~~e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~ip~~~~-------H--~~~~~~~~~~l~v 103 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHA-HRHSQVSYVVEGEFHVNVDGVI-KVLTAGDSFFVPPHVD-------H--GAVCPTGGILIDT 103 (116)
T ss_dssp EEEEEECTTEEEEEEC-CSSEEEEEEEEECEEEEETTEE-EEECTTCEEEECTTCC-------E--EEEESSCEEEEEE
T ss_pred EEEEEECCCCcCCcEE-CCcceEEEEEeeEEEEEECCEE-EEeCCCCEEEECcCCc-------e--eeEeCCCcEEEEE
Confidence 4566788888754433 3457899999999999998875 5789998864322211 1 2445567777766
No 62
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=80.43 E-value=4.7 Score=37.96 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=50.3
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEE-eccEEEEEE
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIA-HTTCRIMYW 267 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A-~EdcrVL~w 267 (508)
....++++|+.+-..- .+.+.+.++++|++++..+|+. +.+.+||.+=-|.-.. - .+.| .++++++..
T Consensus 155 ~~~~~~~~G~~~~~H~-H~~~e~~~Vl~G~~~~~i~g~~-~~l~~Gd~i~ip~~~~----H-----~~~~~~~~~~~ll~ 223 (227)
T 3rns_A 155 MTIMSFWKGESLDPHK-APGDALVTVLDGEGKYYVDGKP-FIVKKGESAVLPANIP----H-----AVEAETENFKMLLI 223 (227)
T ss_dssp EEEEEECTTCEEEEEC-CSSEEEEEEEEEEEEEEETTEE-EEEETTEEEEECTTSC----E-----EEECCSSCEEEEEE
T ss_pred EEEEEECCCCccCCEE-CCCcEEEEEEeEEEEEEECCEE-EEECCCCEEEECCCCc----E-----EEEeCCCCEEEEEE
Confidence 3466789999887665 4567899999999999999875 5789998876444332 1 2556 778887754
No 63
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=79.75 E-value=4.8 Score=32.38 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=36.9
Q ss_pred cEEEEecCCCeEEeecccccC-eEEEEEeceEEEEeCCE-EEeecCCCCeeccc
Q psy709 189 IKTQTLQPGEAYAVQNITRTD-RLALLLTGKAYVAQDKQ-YLHPIATGEFLDSP 240 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d-~L~lLLSGrVrVs~dg~-~Lh~I~PGqFfGE~ 240 (508)
....++++|+..-..- .+.+ .+.+|++|++++..+|. ..+.+.|||.+--+
T Consensus 20 ~~~~~~~Pg~~~~~H~-H~~~~e~~~Vl~G~~~~~~~~g~~~~~l~~Gd~~~~p 72 (97)
T 2fqp_A 20 VTEWRFPPGGETGWHR-HSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTRP 72 (97)
T ss_dssp EEEEEECTTCBCCSEE-CCSCEEEEESSCEEEEEEETTEEEEEEECTTCCEEEC
T ss_pred EEEEEECCCCCCCCEE-CCCCcEEEEEeecEEEEEeCCCCEEEEEcCCCEEEeC
Confidence 3456788888754333 2334 59999999999999874 45689999888544
No 64
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=77.76 E-value=12 Score=29.89 Aligned_cols=49 Identities=14% Similarity=0.308 Sum_probs=37.6
Q ss_pred cEEEEecCCCeEEee--cccc-cCeEEEEEeceEEEEeCCEEEeecCCCCeecc
Q psy709 189 IKTQTLQPGEAYAVQ--NITR-TDRLALLLTGKAYVAQDKQYLHPIATGEFLDS 239 (508)
Q Consensus 189 a~vr~lkKGe~la~E--Gktp-~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE 239 (508)
....++++|...-.. - .+ .+.+.++++|++++..+|+. +.+.|||.+--
T Consensus 23 ~~~~~~~pg~~~~~h~~~-H~~~~e~~~vl~G~~~~~~~~~~-~~l~~Gd~~~i 74 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNR-HRGADQWLFVVDGAGEAIVDGHT-QALQAGSLIAI 74 (113)
T ss_dssp EEEEEECTTCEEECCCSS-SCCCEEEEEEEECCEEEEETTEE-EEECTTEEEEE
T ss_pred EEEEEECCCCccCCcccc-cCCCcEEEEEEeCEEEEEECCEE-EEeCCCCEEEE
Confidence 445678999877654 3 33 57899999999999998876 46899987753
No 65
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=75.41 E-value=8 Score=34.66 Aligned_cols=51 Identities=10% Similarity=0.171 Sum_probs=36.6
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccc
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPE 241 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e 241 (508)
....++++|...-..- -+.+.+.+|++|++++..+|+. +.+.|||++-=+.
T Consensus 46 ~~~~~l~pG~~~~~H~-H~~~E~~~Vl~G~~~v~v~g~~-~~l~~Gd~i~ip~ 96 (156)
T 3kgz_A 46 WRYFEVDEGGYSTLER-HAHVHAVMIHRGHGQCLVGETI-SDVAQGDLVFIPP 96 (156)
T ss_dssp EEEEEEEEEEECCCBB-CSSCEEEEEEEEEEEEEETTEE-EEEETTCEEEECT
T ss_pred EEEEEECCCCccCcee-CCCcEEEEEEeCEEEEEECCEE-EEeCCCCEEEECC
Confidence 3345667776654443 3457899999999999999875 4689999875443
No 66
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=74.74 E-value=9.4 Score=34.38 Aligned_cols=88 Identities=10% Similarity=0.187 Sum_probs=55.9
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEE-eccEEEEEE
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIA-HTTCRIMYW 267 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A-~EdcrVL~w 267 (508)
....++++|...-..- .+.+.+.+|++|++++..+|+. +.+.|||++-=+.-.. ....... .++++++++
T Consensus 58 ~~~~~l~pG~~~~~H~-H~~~E~~~Vl~G~~~~~i~~~~-~~l~~Gd~i~ip~~~~-------H~~~n~~~~~~~~~l~i 128 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLER-HEHTHVVMVVRGHAEVVLDDRV-EPLTPLDCVYIAPHAW-------HQIHATGANEPLGFLCI 128 (167)
T ss_dssp EEEEEECTTCBCCCBB-CSSCEEEEEEESEEEEEETTEE-EEECTTCEEEECTTCC-------EEEEEESSSCCEEEEEE
T ss_pred EEEEEECCCCCCCCcc-CCCcEEEEEEeCEEEEEECCEE-EEECCCCEEEECCCCc-------EEEEeCCCCCCEEEEEE
Confidence 3456788888765544 3468999999999999999985 4789998875333222 2222222 446666665
Q ss_pred eh-----------HHHHHHHhcchHHHHHH
Q psy709 268 QR-----------STLEYLFVKETYLANVM 286 (508)
Q Consensus 268 ~R-----------e~L~~Ll~k~P~L~~lf 286 (508)
-. +++ .-+.++|.++..+
T Consensus 129 ~~~~~d~p~~p~~~~~-~~l~~~~~~~~~~ 157 (167)
T 3ibm_A 129 VDSDRDRPQRPDADDL-ARMCADPAVARRI 157 (167)
T ss_dssp EESSCCCCBCCCHHHH-HHHTTSHHHHHHC
T ss_pred EeCCcCcccCCCHHHH-HHHHcChHHHHhh
Confidence 42 233 3355777776644
No 67
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=73.23 E-value=11 Score=39.35 Aligned_cols=79 Identities=10% Similarity=0.158 Sum_probs=57.1
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEe
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQ 268 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~ 268 (508)
+....+++|+..-..- ...+.+++|++|+..+..+|+.. .+++||++--|.+.. -. + .+..+.+++++++++
T Consensus 296 ~~~~~l~PG~~~~~Hr-H~~~~v~~VleG~G~~~V~ge~~-~~~~GD~~~iP~g~~----H~-~-~N~g~~e~~~ll~i~ 367 (394)
T 3bu7_A 296 ASMQMLRPGEHTKAHR-HTGNVIYNVAKGQGYSIVGGKRF-DWSEHDIFCVPAWTW----HE-H-CNTQERDDACLFSFN 367 (394)
T ss_dssp EEEEEECTTCBCCCEE-ESSCEEEEEEECCEEEEETTEEE-EECTTCEEEECTTCC----EE-E-EECCSSCCEEEEEEE
T ss_pred EEEEEECCCCcCCCcc-cCCcEEEEEEeCeEEEEECCEEE-EEeCCCEEEECCCCe----EE-e-EeCCCCCCeEEEEee
Confidence 5677888888776665 34578999999999988888765 699999999887765 11 0 001114689999998
Q ss_pred hHHHHHH
Q psy709 269 RSTLEYL 275 (508)
Q Consensus 269 Re~L~~L 275 (508)
..-+...
T Consensus 368 D~Pl~~~ 374 (394)
T 3bu7_A 368 DFPVMEK 374 (394)
T ss_dssp SHHHHHH
T ss_pred CHHHHHH
Confidence 7766643
No 68
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=72.36 E-value=8.2 Score=32.05 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=36.0
Q ss_pred cEEEEecCCCeEEeecccc-cCeEEEEEeceEEEEe-CCEEEeecCCCCeecc
Q psy709 189 IKTQTLQPGEAYAVQNITR-TDRLALLLTGKAYVAQ-DKQYLHPIATGEFLDS 239 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp-~d~L~lLLSGrVrVs~-dg~~Lh~I~PGqFfGE 239 (508)
....++++|+.+-..- .+ .+.+++|++|++++.. +|+. +.+++||.+--
T Consensus 41 ~~~~~~~pg~~~~~H~-H~~~~e~~~Vl~G~~~~~~~~~~~-~~l~~Gd~~~i 91 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHV-HPHGQDTWTVISGEAEYHQGNGIV-THLKAGDIAIA 91 (125)
T ss_dssp EEEEEECTTCEECCC--CTTCEEEEEEEECEEEEECSTTCE-EEEETTEEEEE
T ss_pred EEEEEECCCCcCCccc-CCCCeEEEEEEEeEEEEEECCCeE-EEeCCCCEEEE
Confidence 4456788998876554 34 3688899999999998 6655 57899987753
No 69
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=72.04 E-value=12 Score=32.85 Aligned_cols=50 Identities=22% Similarity=0.409 Sum_probs=36.1
Q ss_pred cEEEEecCCCe-EEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecc
Q psy709 189 IKTQTLQPGEA-YAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDS 239 (508)
Q Consensus 189 a~vr~lkKGe~-la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE 239 (508)
....++++|+. .-..-....+.+.+|++|++++..+|+. +.++|||.+--
T Consensus 48 ~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~-~~l~~Gd~i~i 98 (162)
T 3l2h_A 48 IHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTMENDQ-YPIAPGDFVGF 98 (162)
T ss_dssp EEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEETTEE-EEECTTCEEEE
T ss_pred EEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEECCEE-EEeCCCCEEEE
Confidence 34567888874 2221111357999999999999999986 57999998743
No 70
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=70.34 E-value=8.9 Score=31.53 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=36.0
Q ss_pred EEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecc
Q psy709 190 KTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDS 239 (508)
Q Consensus 190 ~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE 239 (508)
...++++|...-..- .+.+.+.++++|++++..+|+..+.+.|||.+--
T Consensus 30 ~~~~~~pg~~~~~H~-H~~~e~~~Vl~G~~~~~i~~~~~~~l~~Gd~i~i 78 (117)
T 2b8m_A 30 NHIVLPRGEQMPKHY-SNSYVHLIIIKGEMTLTLEDQEPHNYKEGNIVYV 78 (117)
T ss_dssp EEEEEETTCBCCCEE-CSSCEEEEEEESEEEEEETTSCCEEEETTCEEEE
T ss_pred EEEEECCCCcCCCEe-CCCcEEEEEEeCEEEEEECCEEEEEeCCCCEEEE
Confidence 345677887654333 3457899999999999998876547899987753
No 71
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=68.88 E-value=19 Score=28.69 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=42.8
Q ss_pred EEEEecCCCeEEeeccccc-CeE-EEEEeceEEEEeC-CEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEE
Q psy709 190 KTQTLQPGEAYAVQNITRT-DRL-ALLLTGKAYVAQD-KQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMY 266 (508)
Q Consensus 190 ~vr~lkKGe~la~EGktp~-d~L-~lLLSGrVrVs~d-g~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~ 266 (508)
...++++|..+-..- .+. ..+ .++++|++++..+ |+. +.+.+||.+--+.-.. . ++.+.++++++.
T Consensus 36 ~~~~~~~g~~~~~H~-H~~~~e~~~~vl~G~~~~~~~~~~~-~~l~~Gd~~~ip~~~~-------H--~~~~~~~~~~l~ 104 (110)
T 2q30_A 36 VSFTFKAGQELPVHS-HNIEGELNIVVLEGEGEFVGDGDAV-IPAPRGAVLVAPISTP-------H--GVRAVTDMKVLV 104 (110)
T ss_dssp EEEEECTTCEEEEEC-CSSSCEEEEEEEESCEEEECGGGCE-EEECTTEEEEEETTSC-------E--EEEESSSEEEEE
T ss_pred EEEEECCCCcCCccc-CCCCccEEEEEEeCEEEEEeCCCEE-EEECCCCEEEeCCCCc-------E--EEEEcCCcEEEE
Confidence 445688998776543 232 466 7999999999987 554 4689998764332221 1 244556676655
Q ss_pred E
Q psy709 267 W 267 (508)
Q Consensus 267 w 267 (508)
+
T Consensus 105 ~ 105 (110)
T 2q30_A 105 T 105 (110)
T ss_dssp E
T ss_pred E
Confidence 4
No 72
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=68.28 E-value=7.9 Score=30.52 Aligned_cols=51 Identities=25% Similarity=0.401 Sum_probs=35.5
Q ss_pred CeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEeh
Q psy709 209 DRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQR 269 (508)
Q Consensus 209 d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~R 269 (508)
+.+.++++|++++..+|+. +.+.|||.+-=+.- .. .. +.+.++|+++.++.
T Consensus 51 ~e~~~v~~G~~~~~~~~~~-~~l~~Gd~~~ip~~-----~~--H~--~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 51 DEVFIVMEGTLQIAFRDQN-ITLQAGEMYVIPKG-----VE--HK--PMAKEECKIMIIEP 101 (102)
T ss_dssp CEEEEEEESEEEEECSSCE-EEEETTEEEEECTT-----CC--BE--EEEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEECCEE-EEEcCCCEEEECCC-----Ce--Ee--eEcCCCCEEEEEEc
Confidence 7899999999999998865 46789987642221 11 11 33447899888764
No 73
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=67.68 E-value=21 Score=31.11 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=43.7
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEE
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYW 267 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w 267 (508)
....++++|+ .-. - .+.+.+.+|++|++++..+|+.. .++|||.+-=+.= .+.+....++++++.+
T Consensus 59 ~~~~~~~pG~-~~~-h-~~~~E~~~VLeG~~~l~~~g~~~-~l~~GD~i~~p~g---------~~h~~~~~~~~~~l~v 124 (133)
T 2pyt_A 59 AGFMQWDNAF-FPW-T-LNYDEIDMVLEGELHVRHEGETM-IAKAGDVMFIPKG---------SSIEFGTPTSVRFLYV 124 (133)
T ss_dssp EEEEEEEEEE-EEE-E-CSSEEEEEEEEEEEEEEETTEEE-EEETTCEEEECTT---------CEEEEEEEEEEEEEEE
T ss_pred EEEEEECCCC-ccc-c-CCCCEEEEEEECEEEEEECCEEE-EECCCcEEEECCC---------CEEEEEeCCCEEEEEE
Confidence 4466788883 222 2 23589999999999999998876 6999987752211 1222334667887765
No 74
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=67.53 E-value=17 Score=34.48 Aligned_cols=45 Identities=7% Similarity=0.146 Sum_probs=35.3
Q ss_pred EEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCee
Q psy709 191 TQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFL 237 (508)
Q Consensus 191 vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFf 237 (508)
..++++|..+-..- -+.+.+.+|++|++++..+|+. +.+.|||.+
T Consensus 38 ~~~~~pg~~~~~H~-H~~~e~~~Vl~G~~~~~~~~~~-~~l~~Gd~i 82 (243)
T 3h7j_A 38 MSYVPPHTNVEPHQ-HKEVQIGMVVSGELMMTVGDVT-RKMTALESA 82 (243)
T ss_dssp EEEECTTEEEEEEC-CSSEEEEEEEESEEEEEETTEE-EEEETTTCE
T ss_pred EEEECCCCccCCEE-CCCcEEEEEEEeEEEEEECCEE-EEECCCCEE
Confidence 34588888776555 4567899999999999998875 479999844
No 75
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=67.22 E-value=13 Score=31.17 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=36.9
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeeccc
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSP 240 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~ 240 (508)
....++++|...-.-- .+...+.++++|++++..+++. ..+.|||.+--+
T Consensus 50 ~~~~~~~pg~~~~~H~-H~~~e~~~Vl~G~~~~~i~~~~-~~l~~Gd~i~ip 99 (126)
T 1vj2_A 50 MRLFTVEPGGLIDRHS-HPWEHEIFVLKGKLTVLKEQGE-ETVEEGFYIFVE 99 (126)
T ss_dssp EEEEEEEEEEEEEEEC-CSSCEEEEEEESEEEEECSSCE-EEEETTEEEEEC
T ss_pred EEEEEECCCCcCCcee-CCCcEEEEEEEeEEEEEECCEE-EEECCCCEEEEC
Confidence 3456677777665444 3457999999999999998876 468899887543
No 76
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=67.12 E-value=15 Score=32.81 Aligned_cols=52 Identities=19% Similarity=0.444 Sum_probs=37.4
Q ss_pred cEEEEecCCCeEEeecccc-cCeEEEEEeceEEEEeCCEEEeecCCCCeecccc
Q psy709 189 IKTQTLQPGEAYAVQNITR-TDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPE 241 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp-~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e 241 (508)
....++++|+.....-..+ .+.+.+|++|++++..+++. +.+++||.+-=+.
T Consensus 45 ~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~~~-~~l~~GD~i~ip~ 97 (163)
T 3i7d_A 45 VNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQGE-HPMVPGDCAAFPA 97 (163)
T ss_dssp EEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETTEE-EEECTTCEEEECT
T ss_pred EEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECCEE-EEeCCCCEEEECC
Confidence 4567888988542111112 37999999999999999875 5799999876443
No 77
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=66.52 E-value=16 Score=33.07 Aligned_cols=53 Identities=11% Similarity=0.300 Sum_probs=38.1
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccc
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFE 243 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~ 243 (508)
....++++|...-..- -+.+.+.+|++|++++..+|+. +.+.|||++-=|.-.
T Consensus 55 ~~~~~l~pG~~~~~H~-H~~~E~~~Vl~G~~~~~v~g~~-~~l~~GD~i~ip~g~ 107 (166)
T 3jzv_A 55 LRYFEVGPGGHSTLER-HQHAHGVMILKGRGHAMVGRAV-SAVAPYDLVTIPGWS 107 (166)
T ss_dssp EEEEEEEEEEECCCBB-CSSCEEEEEEEECEEEEETTEE-EEECTTCEEEECTTC
T ss_pred EEEEEECCCCccCcee-CCCcEEEEEEeCEEEEEECCEE-EEeCCCCEEEECCCC
Confidence 3445677777654443 3457899999999999999875 478999987654433
No 78
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=66.40 E-value=16 Score=34.51 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=39.6
Q ss_pred EEEecC-CCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccc
Q psy709 191 TQTLQP-GEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFE 243 (508)
Q Consensus 191 vr~lkK-Ge~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~ 243 (508)
..++++ |...-..- .+.+.+.+|++|++++..+|+.. .+.|||.+--+...
T Consensus 149 ~~~~~p~g~~~~~H~-H~~~e~~~Vl~G~~~~~i~~~~~-~l~~Gd~i~ip~~~ 200 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHK-HRNEQIGICIGGGYDMTVEGCTV-EMKFGTAYFCEPRE 200 (243)
T ss_dssp EEEECTTTEEEEEEC-CSSEEEEEECSSCEEEEETTEEE-EECTTCEEEECTTC
T ss_pred EEEECCCCCcCCCEe-CCCcEEEEEEECEEEEEECCEEE-EECCCCEEEECCCC
Confidence 556889 87776554 45678999999999999999765 59999988655443
No 79
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=65.17 E-value=17 Score=36.79 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=52.2
Q ss_pred EEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEeh
Q psy709 190 KTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQR 269 (508)
Q Consensus 190 ~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~R 269 (508)
....+++|..--.-- .+...++++++|+.+++.+|++. .+++||.+-=|.|.. ..+.+.|++++++++-
T Consensus 271 ~~~~l~pG~~~~~H~-h~~~ev~~v~~G~g~~~v~~~~~-~~~~GD~~~vP~~~~---------H~~~n~e~~~l~~~~d 339 (354)
T 2d40_A 271 FLQLLPKGFASRVAR-TTDSTIYHVVEGSGQVIIGNETF-SFSAKDIFVVPTWHG---------VSFQTTQDSVLFSFSD 339 (354)
T ss_dssp EEEEECTTCBCCCBE-ESSCEEEEEEEEEEEEEETTEEE-EEETTCEEEECTTCC---------EEEEEEEEEEEEEEES
T ss_pred EEEEECCCCCCCcee-cCCcEEEEEEeCeEEEEECCEEE-EEcCCCEEEECCCCe---------EEEEeCCCEEEEEEcC
Confidence 355566665543333 23468999999999999988764 689999987666654 1244568999999987
Q ss_pred HHHHH
Q psy709 270 STLEY 274 (508)
Q Consensus 270 e~L~~ 274 (508)
.-+.+
T Consensus 340 ~p~~~ 344 (354)
T 2d40_A 340 RPVQE 344 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 80
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=65.01 E-value=12 Score=34.68 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=35.5
Q ss_pred ccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeC-CEEEeecCCCCee
Q psy709 188 VIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQD-KQYLHPIATGEFL 237 (508)
Q Consensus 188 ~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~d-g~~Lh~I~PGqFf 237 (508)
.....++++|...-.-- .+.+...+|++|++++..+ |+. +.+++||.+
T Consensus 80 ~~~~v~l~PG~~~~~H~-H~~eE~~~VLeGel~l~ld~ge~-~~L~~GDsi 128 (172)
T 3es1_A 80 VIRVVDMLPGKESPMHR-TNSIDYGIVLEGEIELELDDGAK-RTVRQGGII 128 (172)
T ss_dssp EEEEEEECTTCBCCCBC-CSEEEEEEEEESCEEEECGGGCE-EEECTTCEE
T ss_pred EEEEEEECCCCCCCCee-cCceEEEEEEeCEEEEEECCCeE-EEECCCCEE
Confidence 45567899997543333 3345688999999999998 554 578999998
No 81
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=64.07 E-value=15 Score=33.09 Aligned_cols=51 Identities=8% Similarity=0.020 Sum_probs=36.2
Q ss_pred cEEEEecCCCeEEe--ecccccCeEEEEEeceEEEEeCCE---EEeecCCCCeecc
Q psy709 189 IKTQTLQPGEAYAV--QNITRTDRLALLLTGKAYVAQDKQ---YLHPIATGEFLDS 239 (508)
Q Consensus 189 a~vr~lkKGe~la~--EGktp~d~L~lLLSGrVrVs~dg~---~Lh~I~PGqFfGE 239 (508)
....++++|..... .-..+.+.+.+|++|++++..++. ..+.++|||.+-=
T Consensus 119 ~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~~~~l~~GD~~~~ 174 (198)
T 2bnm_A 119 PLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFV 174 (198)
T ss_dssp EEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEE
T ss_pred EEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcccEEECCCCEEEe
Confidence 34557888876542 121344789999999999999882 3457999998753
No 82
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=63.88 E-value=17 Score=34.67 Aligned_cols=73 Identities=12% Similarity=0.317 Sum_probs=50.1
Q ss_pred ccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEE
Q psy709 188 VIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYW 267 (508)
Q Consensus 188 ~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w 267 (508)
...+.++++|..+-..-....++..+|++|++.+..+|+.. .+++||++-=.+... ....-.-.++||++..
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~~~~-~l~~GD~~~~~~~~p-------H~~~n~g~~~~~yl~~ 237 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEENYY-PVTAGDIIWMGAHCP-------QWYGALGRNWSKYLLY 237 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETTEEE-EEETTCEEEECTTCC-------EEEEEESSSCEEEEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEECCEEE-EcCCCCEEEECCCCC-------EEEEcCCCCCEEEEEE
Confidence 46678899998877532134578999999999999988765 799998874222221 1222334667888876
Q ss_pred e
Q psy709 268 Q 268 (508)
Q Consensus 268 ~ 268 (508)
.
T Consensus 238 k 238 (246)
T 1sfn_A 238 K 238 (246)
T ss_dssp E
T ss_pred E
Confidence 4
No 83
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=63.71 E-value=25 Score=29.85 Aligned_cols=47 Identities=17% Similarity=0.336 Sum_probs=35.7
Q ss_pred EEEEecCCCeEEeecccc-cCeEEEEEeceEEEEeCCEEEeecCCCCeec
Q psy709 190 KTQTLQPGEAYAVQNITR-TDRLALLLTGKAYVAQDKQYLHPIATGEFLD 238 (508)
Q Consensus 190 ~vr~lkKGe~la~EGktp-~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfG 238 (508)
...++++|..+-.-- .+ .+.+.+|++|++++..+|+.. .+.|||.+-
T Consensus 60 ~~~~~~pg~~~~~H~-H~~~~E~~~Vl~G~~~~~i~~~~~-~l~~Gd~i~ 107 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHK-HEGEFEIYYILLGEGVFHDNGKDV-PIKAGDVCF 107 (133)
T ss_dssp EEEEECTTCEEEEEE-CCSEEEEEEEEESEEEEEETTEEE-EEETTEEEE
T ss_pred EEEEECCCCccCceE-CCCccEEEEEEeCEEEEEECCEEE-EeCCCcEEE
Confidence 456789998765433 23 368999999999999998754 689998764
No 84
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=62.98 E-value=16 Score=31.94 Aligned_cols=51 Identities=12% Similarity=0.324 Sum_probs=38.0
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeeccc
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSP 240 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~ 240 (508)
....++++|...-..- -+...+.++++|++++..+++..+.+.|||.+--+
T Consensus 50 ~~~~~~~pg~~~~~H~-H~~~E~~~Vl~G~~~~~~~~~~~~~l~~Gd~i~ip 100 (147)
T 2f4p_A 50 VYDVVFEPGARTHWHS-HPGGQILIVTRGKGFYQERGKPARILKKGDVVEIP 100 (147)
T ss_dssp EEEEEECTTCEECSEE-CTTCEEEEEEEEEEEEEETTSCCEEEETTCEEEEC
T ss_pred EEEEEECCCCccCceE-CCCceEEEEEeCEEEEEECCEEEEEECCCCEEEEC
Confidence 4466788888764433 33478999999999999988764578999887543
No 85
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=61.68 E-value=19 Score=33.19 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=44.4
Q ss_pred EEEecC-CCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEe
Q psy709 191 TQTLQP-GEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQ 268 (508)
Q Consensus 191 vr~lkK-Ge~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~ 268 (508)
..++++ |..--.+-....+.+++|++|+++|+.+|+.. .+.+|+.+-=|+ ...+...-...++||++...
T Consensus 92 ~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl~g~~~-~L~~Gds~~iP~-------g~~H~~~N~~d~~Arll~Vq 162 (166)
T 2vpv_A 92 ILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTVCKNKF-LSVKGSTFQIPA-------FNEYAIANRGNDEAKMFFVQ 162 (166)
T ss_dssp EEEECSSGGGCEEEECCSEEEEEEEEESEEEEEETTEEE-EEETTCEEEECT-------TCEEEEEECSSSCEEEEEEE
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEEeEEEEEECCEEE-EEcCCCEEEECC-------CCCEEEEECCCCCEEEEEEE
Confidence 567888 64333322123578999999999999998654 799998764222 22233333345667777653
No 86
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=61.55 E-value=21 Score=33.92 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=45.2
Q ss_pred EEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEe
Q psy709 190 KTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQ 268 (508)
Q Consensus 190 ~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~ 268 (508)
...++++|...... . .+++.+|++|++++..+|+. +.+++||.+-=+.= ..-.+ ...++++++.+.
T Consensus 53 ~~~~l~Pg~~~~~~--~-~ee~~~Vl~G~~~~~~~~~~-~~l~~Gd~~~~p~~-----~~H~~----~n~~~~~~l~v~ 118 (246)
T 1sfn_A 53 FTAEMPAGAQATES--V-YQRFAFVLSGEVDVAVGGET-RTLREYDYVYLPAG-----EKHML----TAKTDARVSVFE 118 (246)
T ss_dssp EEEEECTTCEEECC--S-SEEEEEEEEEEEEEECSSCE-EEECTTEEEEECTT-----CCCEE----EEEEEEEEEEEE
T ss_pred EEEEECCCCcCCCC--c-eeEEEEEEECEEEEEECCEE-EEECCCCEEEECCC-----CCEEE----EeCCCEEEEEEE
Confidence 45678898765543 2 68899999999999999876 57999987752221 11222 222788887765
No 87
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=61.53 E-value=26 Score=36.19 Aligned_cols=77 Identities=14% Similarity=0.237 Sum_probs=59.6
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEe
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQ 268 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~ 268 (508)
+....+.+|+.--..- .....++.|++|+-.+..+|+.+ ...+||.|-=|+|.. .+..+.++|.++.++
T Consensus 281 ~~~~~L~pG~~t~~hR-ht~s~Vy~V~eG~G~~~I~~~~~-~w~~gD~fvvP~w~~---------h~~~n~~~a~Lf~~~ 349 (368)
T 3nw4_A 281 CEFHRLRAGTETATRN-EVGSTVFQVFEGAGAVVMNGETT-KLEKGDMFVVPSWVP---------WSLQAETQFDLFRFS 349 (368)
T ss_dssp EEEEEECTTCBCCCEE-ESSCEEEEEEESCEEEEETTEEE-EECTTCEEEECTTCC---------EEEEESSSEEEEEEE
T ss_pred hheEEECCCCccCCee-ccccEEEEEEeCcEEEEECCEEE-EecCCCEEEECCCCc---------EEEEeCCCEEEEEEe
Confidence 4456677777665544 33579999999999999999876 589999998787765 236677999999999
Q ss_pred hHHHHHHH
Q psy709 269 RSTLEYLF 276 (508)
Q Consensus 269 Re~L~~Ll 276 (508)
-.-+.+-+
T Consensus 350 D~Pl~~~L 357 (368)
T 3nw4_A 350 DAPIMEAL 357 (368)
T ss_dssp SHHHHHHT
T ss_pred CHHHHHHh
Confidence 88877544
No 88
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=60.60 E-value=41 Score=27.71 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=36.1
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeec
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLD 238 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfG 238 (508)
....++++|...-..- .....+.++++|++++..+|+.. .+.|||.+-
T Consensus 36 ~~~~~~~pg~~~~~H~-H~~~Ei~~v~~G~~~~~i~~~~~-~l~~Gd~~~ 83 (128)
T 4i4a_A 36 GAWCIVRPETKSFRHS-HNEYELFIVIQGNAIIRINDEDF-PVTKGDLII 83 (128)
T ss_dssp EEEEEECTTEECCCBC-CSSEEEEEEEESEEEEEETTEEE-EEETTCEEE
T ss_pred EEEEEECCCCccCCEe-cCCeEEEEEEeCEEEEEECCEEE-EECCCcEEE
Confidence 4567788887544333 23578999999999999998764 688998765
No 89
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=59.84 E-value=9.2 Score=30.98 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=36.4
Q ss_pred CeEEEEEeceEEEEeCC-EEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEehHHH
Q psy709 209 DRLALLLTGKAYVAQDK-QYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQRSTL 272 (508)
Q Consensus 209 d~L~lLLSGrVrVs~dg-~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~Re~L 272 (508)
+.+.++++|++++..+| +. +.+.|||.+-=|.= .... ..+.++++++.++.+..
T Consensus 49 ~E~~~Vl~G~~~~~~~~~~~-~~l~~Gd~~~ip~~-------~~H~--~~~~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 49 DKVLFAVEGDMAVDFADGGS-MTIREGEMAVVPKS-------VSHR--PRSENGCSLVLIELSDP 103 (107)
T ss_dssp CEEEEESSSCEEEEETTSCE-EEECTTEEEEECTT-------CCEE--EEEEEEEEEEEEECC--
T ss_pred CEEEEEEeCEEEEEECCCcE-EEECCCCEEEECCC-------CcEe--eEeCCCeEEEEEECCCc
Confidence 79999999999999988 54 57999987742211 1111 23346788888876543
No 90
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=59.59 E-value=22 Score=32.15 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=37.0
Q ss_pred cCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEeh
Q psy709 208 TDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQR 269 (508)
Q Consensus 208 ~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~R 269 (508)
.+...+|++|++++..+|+.. .++|||.+-=|. . .+.+..+.++|+++.+..
T Consensus 84 ~eE~~yVLeG~~~l~i~g~~~-~l~~GD~i~iP~------G---~~h~~~n~~~a~~l~V~~ 135 (151)
T 4axo_A 84 YDEIDYVIDGTLDIIIDGRKV-SASSGELIFIPK------G---SKIQFSVPDYARFIYVTY 135 (151)
T ss_dssp SEEEEEEEEEEEEEEETTEEE-EEETTCEEEECT------T---CEEEEEEEEEEEEEEEEE
T ss_pred CcEEEEEEEeEEEEEECCEEE-EEcCCCEEEECC------C---CEEEEEeCCCEEEEEEEC
Confidence 478999999999999988764 699998774221 1 123344457888887654
No 91
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=59.12 E-value=25 Score=34.24 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=39.8
Q ss_pred ccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecc
Q psy709 188 VIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDS 239 (508)
Q Consensus 188 ~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE 239 (508)
...+.++++|..+-..-....++..+|++|+..+.-+|+. +.++|||++-=
T Consensus 192 ~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~~~~~-~~v~~GD~~~~ 242 (278)
T 1sq4_A 192 HVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRLNQDW-VEVEAGDFMWL 242 (278)
T ss_dssp EEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEETTEE-EEEETTCEEEE
T ss_pred EEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEECCEE-EEeCCCCEEEE
Confidence 4667889999999863313346889999999999988766 57999998743
No 92
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=57.75 E-value=40 Score=33.37 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=40.5
Q ss_pred cEEEEecCCCeEEeecccc-cCeEEEEEeceEEEEe---CCE-EEeecCCCCeeccccc
Q psy709 189 IKTQTLQPGEAYAVQNITR-TDRLALLLTGKAYVAQ---DKQ-YLHPIATGEFLDSPEF 242 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp-~d~L~lLLSGrVrVs~---dg~-~Lh~I~PGqFfGE~e~ 242 (508)
....++++|......- .+ .+++.+|++|++++.. +|+ ..+.+++||.+-=+..
T Consensus 236 ~~~~~l~pg~~~~~H~-H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~~ 293 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHW-HPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGYVPKG 293 (361)
T ss_dssp EEEEEECTTCEEEEEE-CSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEEECTT
T ss_pred EEEEEECCCccccccc-CCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEEECCC
Confidence 5567899998876654 33 3899999999999987 665 4678999998864443
No 93
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=57.09 E-value=14 Score=33.54 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=38.7
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeC---CEEEeecCCCCeecc
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQD---KQYLHPIATGEFLDS 239 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~d---g~~Lh~I~PGqFfGE 239 (508)
....++++|...... ....+++.+|++|++++... +...+.+++||.+-=
T Consensus 43 ~~~~~l~pg~~~~pH-h~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~~ 95 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKI 95 (178)
T ss_dssp EEEEEECTTEEEEEE-EESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred EEEEEecCCcEecCc-CCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEEEE
Confidence 567789999887655 23458999999999999773 455678999988763
No 94
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=56.16 E-value=30 Score=28.64 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=38.9
Q ss_pred CHHHHHHHhcccccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeC-CEEEeecCCCCeec
Q psy709 176 SRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQD-KQYLHPIATGEFLD 238 (508)
Q Consensus 176 S~eqf~~Ll~c~~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~d-g~~Lh~I~PGqFfG 238 (508)
.++++..--.. .....+.++|+.-.. - +.+.+.+|++|++++..+ |+. ..++|||.+-
T Consensus 21 ~~~~l~~~g~~-~~~~~~~~pg~~~~h-H--~~~E~~~Vl~G~~~~~i~~g~~-~~l~~GD~i~ 79 (101)
T 1o5u_A 21 TPEKLKELSVE-KWPIWEKEVSEFDWY-Y--DTNETCYILEGKVEVTTEDGKK-YVIEKGDLVT 79 (101)
T ss_dssp CHHHHHHHTGG-GSCEEEECSEEEEEE-C--SSCEEEEEEEEEEEEEETTCCE-EEEETTCEEE
T ss_pred CccEEeeCCce-EEEEEEeCCCccccc-C--CceEEEEEEeCEEEEEECCCCE-EEECCCCEEE
Confidence 34444444332 233556778875443 2 358999999999999998 654 4689998875
No 95
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=55.04 E-value=27 Score=33.91 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=38.9
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeeccc
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSP 240 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~ 240 (508)
....++++|+..-..-.+..+.+.+|++|++++..+|+. +.+++||++-=+
T Consensus 48 ~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~-~~l~~Gd~~~~p 98 (337)
T 1y3t_A 48 IVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTLDGER-YLLISGDYANIP 98 (337)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEETTEE-EEECTTCEEEEC
T ss_pred EEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEECCEE-EEECCCCEEEEC
Confidence 445678999876554422268999999999999998876 579999988643
No 96
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=54.91 E-value=42 Score=33.97 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=52.1
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEE-EeCCEEEeecCCCCeeccccccc-ccccCCceeEEEEEeccEEEEE
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYV-AQDKQYLHPIATGEFLDSPEFES-RANSENKFKVSIIAHTTCRIMY 266 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrV-s~dg~~Lh~I~PGqFfGE~e~~s-~pss~~~fqVTI~A~EdcrVL~ 266 (508)
.....+++|+..-..- .+.+.+++|++|+.++ ..+|+. ..+++||++--|.... .-... ..++++++.
T Consensus 102 ~~~~~l~PG~~~~~H~-H~~~e~~yVl~G~g~~t~v~g~~-~~l~~GD~~~iP~g~~H~~~n~--------~~~~~~~l~ 171 (354)
T 2d40_A 102 AGLQLIMPGEVAPSHR-HNQSALRFIVEGKGAFTAVDGER-TPMNEGDFILTPQWRWHDHGNP--------GDEPVIWLD 171 (354)
T ss_dssp EEEEEECTTCEEEEEE-ESSCEEEEEEECSSCEEEETTEE-EECCTTCEEEECTTSCEEEECC--------SSSCEEEEE
T ss_pred EEEEEECCCCCcCCee-cCcceEEEEEEEEEEEEEECCEE-EEEcCCCEEEECCCCcEEeEeC--------CCCCEEEEE
Confidence 5678899998875554 3457999999999988 667765 5799999997665544 11111 145788887
Q ss_pred EehHHHH
Q psy709 267 WQRSTLE 273 (508)
Q Consensus 267 w~Re~L~ 273 (508)
+....+.
T Consensus 172 v~d~p~~ 178 (354)
T 2d40_A 172 GLDLPLV 178 (354)
T ss_dssp EECHHHH
T ss_pred EECchhH
Confidence 7754433
No 97
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=53.58 E-value=29 Score=28.76 Aligned_cols=50 Identities=18% Similarity=0.448 Sum_probs=34.2
Q ss_pred cEEEEecCCCeEE-eecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecc
Q psy709 189 IKTQTLQPGEAYA-VQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDS 239 (508)
Q Consensus 189 a~vr~lkKGe~la-~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE 239 (508)
....++++|...- .--.+..+.++++++|++++..+++.. .+.|||++--
T Consensus 28 ~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~~~~~-~l~~Gd~i~i 78 (125)
T 3cew_A 28 VSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGEKI-ELQAGDWLRI 78 (125)
T ss_dssp EEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEETTEEE-EEETTEEEEE
T ss_pred EEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEECCEEE-EeCCCCEEEE
Confidence 4556788887653 122112245666999999999998764 6899987753
No 98
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=53.48 E-value=16 Score=36.16 Aligned_cols=71 Identities=7% Similarity=0.132 Sum_probs=47.1
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeC-CEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEE
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQD-KQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYW 267 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~d-g~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w 267 (508)
....++++|..- .......+++.+|++|++++..+ |+. +.+++||.+=-++=.. -. +...+++|++.+
T Consensus 72 ~~lv~l~PGg~s-~~~~h~~EEfiyVleG~l~l~l~~g~~-~~L~~Gds~y~p~~~~-----H~----~~N~~~Ar~l~V 140 (266)
T 4e2q_A 72 MYLAKMKEMSSS-GLPPQDIERLIFVVEGAVTLTNTSSSS-KKLTVDSYAYLPPNFH-----HS----LDCVESATLVVF 140 (266)
T ss_dssp EEEEEECSSEEC-CCCCTTEEEEEEEEEECEEEEC--CCC-EEECTTEEEEECTTCC-----CE----EEESSCEEEEEE
T ss_pred EEEEEECcCCcC-CCCCCCCeEEEEEEEEEEEEEECCCcE-EEEcCCCEEEECCCCC-----EE----EEeCCCEEEEEE
Confidence 446788998763 22223368999999999999998 664 5799998775432221 21 223578998877
Q ss_pred ehH
Q psy709 268 QRS 270 (508)
Q Consensus 268 ~Re 270 (508)
.+.
T Consensus 141 ~k~ 143 (266)
T 4e2q_A 141 ERR 143 (266)
T ss_dssp EEE
T ss_pred EeE
Confidence 654
No 99
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=53.48 E-value=29 Score=31.11 Aligned_cols=48 Identities=19% Similarity=0.102 Sum_probs=35.9
Q ss_pred EEEEecCCCeEEeecc-cccCeEEEEEeceEEEEeCCEEEeecCCCCeec
Q psy709 190 KTQTLQPGEAYAVQNI-TRTDRLALLLTGKAYVAQDKQYLHPIATGEFLD 238 (508)
Q Consensus 190 ~vr~lkKGe~la~EGk-tp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfG 238 (508)
...++++|......-. .+.+.+.+|++|++++..+|+.. .++|||.+-
T Consensus 107 ~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~~~~-~l~~GD~i~ 155 (192)
T 1y9q_A 107 FEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQWH-ELQQGEHIR 155 (192)
T ss_dssp EEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETTEEE-EECTTCEEE
T ss_pred EEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECCEEE-EeCCCCEEE
Confidence 3457888887653221 23479999999999999988765 699999774
No 100
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=53.32 E-value=30 Score=32.96 Aligned_cols=50 Identities=16% Similarity=0.412 Sum_probs=38.4
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecc
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDS 239 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE 239 (508)
....++++|+.+-..-....+++.+|++|++++..+|+.. .+++||.+-=
T Consensus 181 ~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~~-~l~~GD~i~~ 230 (261)
T 1rc6_A 181 MHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWI-PVKKGDYIFM 230 (261)
T ss_dssp EEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESSSCEE-EEETTCEEEE
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEEeEEEEEECCEEE-EeCCCCEEEE
Confidence 4577899998776544222478999999999999988664 6999988753
No 101
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=52.71 E-value=18 Score=35.25 Aligned_cols=72 Identities=14% Similarity=0.203 Sum_probs=45.5
Q ss_pred cEEEEecCCCeEEee-cccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEE
Q psy709 189 IKTQTLQPGEAYAVQ-NITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYW 267 (508)
Q Consensus 189 a~vr~lkKGe~la~E-Gktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w 267 (508)
....++++|...... -..+.+.+.+|++|++++..+|+. +.+++||.+--+.=.. ....-...++++++.+
T Consensus 70 ~~~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~g~~-~~L~~GD~i~ip~~~~-------H~~~N~g~~~~~~l~v 141 (278)
T 1sq4_A 70 QYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQV-HAMQPGGYAFIPPGAD-------YKVRNTTGQHTRFHWI 141 (278)
T ss_dssp EEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEESSCE-EEECTTEEEEECTTCC-------EEEECCSSSCEEEEEE
T ss_pred EEEEEECCCCccCCCCcCCCceEEEEEEeCEEEEEECCEE-EEECCCCEEEECCCCc-------EEEEECCCCCEEEEEE
Confidence 345667777765221 212357899999999999999876 4799998875332221 1111122467887777
Q ss_pred e
Q psy709 268 Q 268 (508)
Q Consensus 268 ~ 268 (508)
.
T Consensus 142 ~ 142 (278)
T 1sq4_A 142 R 142 (278)
T ss_dssp E
T ss_pred E
Confidence 5
No 102
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=51.91 E-value=28 Score=30.11 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=35.8
Q ss_pred EEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEE-----EeecCCCCeeccc
Q psy709 190 KTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQY-----LHPIATGEFLDSP 240 (508)
Q Consensus 190 ~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~-----Lh~I~PGqFfGE~ 240 (508)
...++++|..+-..-....+.+.+|++|++++..+++. -+.+.|||.+-=|
T Consensus 46 ~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip 101 (148)
T 2oa2_A 46 TLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIP 101 (148)
T ss_dssp EEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEEC
T ss_pred EEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEEC
Confidence 34577888765433312246899999999999987765 2678999876533
No 103
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=51.44 E-value=27 Score=29.29 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=31.8
Q ss_pred EEEecCCCeEEeecccccCeEEEEEeceEEEE--eCCEEEeecCCCCeeccc
Q psy709 191 TQTLQPGEAYAVQNITRTDRLALLLTGKAYVA--QDKQYLHPIATGEFLDSP 240 (508)
Q Consensus 191 vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs--~dg~~Lh~I~PGqFfGE~ 240 (508)
..++++|...-..- .+...+.++++|++++. .+|+. +.+.|||.+--+
T Consensus 43 ~~~~~pg~~~~~H~-H~~~e~~~vl~G~~~~~~~~~~~~-~~l~~Gd~~~ip 92 (145)
T 3ht1_A 43 EFEVSPNGSTPPHF-HEWEHEIYVLEGSMGLVLPDQGRT-EEVGPGEAIFIP 92 (145)
T ss_dssp EEEEEEEEECCCEE-CSSCEEEEEEEECEEEEEGGGTEE-EEECTTCEEEEC
T ss_pred EEEECCCCcCCCcc-CCCceEEEEEEeEEEEEEeECCEE-EEECCCCEEEEC
Confidence 34555665433222 23356678999999999 88865 468999977543
No 104
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=50.35 E-value=48 Score=34.21 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=58.1
Q ss_pred ccEEEEecCCCeEEeecccccCeEEEEEeceEE-EEeCCEEEeecCCCCeeccccccc-ccccCCceeEEEEEeccEEEE
Q psy709 188 VIKTQTLQPGEAYAVQNITRTDRLALLLTGKAY-VAQDKQYLHPIATGEFLDSPEFES-RANSENKFKVSIIAHTTCRIM 265 (508)
Q Consensus 188 ~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVr-Vs~dg~~Lh~I~PGqFfGE~e~~s-~pss~~~fqVTI~A~EdcrVL 265 (508)
.+....+++|+..-..-. ..+.+++|++|+-. +..||+.. .+++||++--|.+.. .-. -+-.++++.+
T Consensus 104 ~a~~~~l~PG~~~~~HrH-~~~ev~~VleG~G~~~~vdG~~~-~~~~GD~v~iP~g~~H~~~--------N~gde~l~~l 173 (368)
T 3nw4_A 104 WAAIQYLGPRETAPEHRH-SQNAFRFVVEGEGVWTVVNGDPV-RMSRGDLLLTPGWCFHGHM--------NDTDQPMAWI 173 (368)
T ss_dssp EEEEEEECTTCEEEEEEE-SSCEEEECSSCEEEEEEETTEEE-EEETTCEEEECTTCCEEEE--------ECSSSCEEEE
T ss_pred EEEEEEECCCCccCceec-ccceEEEEEecceEEEEECCEEE-EEeCCCEEEECCCCcEEeE--------eCCCCCeEEE
Confidence 467889999998877773 45899999999985 77788766 689999998777766 211 1225678888
Q ss_pred EEehHHHHHHH
Q psy709 266 YWQRSTLEYLF 276 (508)
Q Consensus 266 ~w~Re~L~~Ll 276 (508)
.....-|.+.+
T Consensus 174 ~v~D~Pl~~~l 184 (368)
T 3nw4_A 174 DGLDIPFSQQM 184 (368)
T ss_dssp EEECHHHHHHH
T ss_pred EecchHHHhhc
Confidence 77766665443
No 105
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=49.82 E-value=20 Score=34.28 Aligned_cols=71 Identities=10% Similarity=0.134 Sum_probs=44.9
Q ss_pred EEEEecCCCeEEeeccc-ccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEe
Q psy709 190 KTQTLQPGEAYAVQNIT-RTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQ 268 (508)
Q Consensus 190 ~vr~lkKGe~la~EGkt-p~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~ 268 (508)
...++++|......-.. ..+.+.+|++|++++..+|+. +.++|||.+-=++=. .....-...++++++.+.
T Consensus 62 ~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~~-~~L~~Gd~~~~~~~~-------~H~~~N~~~~~~~~l~v~ 133 (261)
T 1rc6_A 62 YLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKT-FALSEGGYLYCPPGS-------LMTFVNAQAEDSQIFLYK 133 (261)
T ss_dssp EEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEETTEE-EEEETTEEEEECTTC-------CCEEEECSSSCEEEEEEE
T ss_pred EEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEECCEE-EEECCCCEEEECCCC-------CEEEEeCCCCCEEEEEEE
Confidence 45677888655432211 246899999999999999875 579999877522211 112122224678887775
No 106
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}
Probab=49.52 E-value=81 Score=30.72 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=44.5
Q ss_pred EEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEeh
Q psy709 192 QTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQR 269 (508)
Q Consensus 192 r~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~R 269 (508)
.++++|+.+...- .+....-++++|.++|.-++..-..+.+||.+. ++ .++ .++++|.++++++.++-
T Consensus 187 ~~L~~g~~~~~~~-~~~~~~l~v~~G~v~v~g~~~~~~~l~~gd~~~----l~---~~~--~l~l~a~~~a~~LL~dl 254 (256)
T 2vec_A 187 IVLDKGESANFQL-HGPRAYLQSIHGKFHALTHHEEKAALTCGDGAF----IR---DEA--NITLVADSPLRALLIDL 254 (256)
T ss_dssp EEECTTCEEEEEC-SSSEEEEEEEESCEEEEETTEEEEEECTTCEEE----EE---SCS--EEEEEESSSEEEEEEEE
T ss_pred EEECCCCEEEEec-CCCeEEEEEEECEEEECCccccceEECCCCEEE----EC---CCC--eEEEEeCCCCEEEEEEe
Confidence 4688999887775 232355667899999964322222467776553 22 122 47789999999999863
No 107
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=49.29 E-value=26 Score=31.61 Aligned_cols=72 Identities=7% Similarity=-0.003 Sum_probs=48.5
Q ss_pred ccEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEE----eccEE
Q psy709 188 VIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIA----HTTCR 263 (508)
Q Consensus 188 ~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A----~Edcr 263 (508)
.....++++|..+-.-. -+.....+|++|+.+...++ ....+|+++-+|.=.. .+ ..+ .|+|.
T Consensus 43 ~v~lvr~~pG~~~p~H~-H~g~ee~~VL~G~~~~~e~~---~~~~~Gd~~~~P~g~~-------H~--~~~~~~~~e~~~ 109 (159)
T 3ebr_A 43 TITLLKAPAGMEMPRHH-HTGTVIVYTVQGSWRYKEHD---WVAHAGSVVYETASTR-------HT--PQSAYAEGPDII 109 (159)
T ss_dssp EEEEEEECSSCBCCCEE-ESSCEEEEEEESCEEETTSS---CCBCTTCEEEECSSEE-------EC--EEESSSSSSCEE
T ss_pred EEEEEEECCCCCccccc-CCCCEEEEEEEeEEEEeCCC---eEECCCeEEEECCCCc-------ce--eEeCCCCCCCEE
Confidence 34567899999887766 44577889999999864333 3678999887765433 11 233 37888
Q ss_pred EEEEehHHH
Q psy709 264 IMYWQRSTL 272 (508)
Q Consensus 264 VL~w~Re~L 272 (508)
++..-...+
T Consensus 110 ~~~~~~G~l 118 (159)
T 3ebr_A 110 TFNIVAGEL 118 (159)
T ss_dssp EEEEEESCE
T ss_pred EEEEecCcc
Confidence 887554444
No 108
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=48.45 E-value=27 Score=30.60 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=36.8
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCE--------EEeecCCCCeeccc
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQ--------YLHPIATGEFLDSP 240 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~--------~Lh~I~PGqFfGE~ 240 (508)
....++++|...-..- .+.+.+.+|++|++++..++. ..+.+.+||.+--+
T Consensus 43 ~~~~~~~pg~~~~~H~-H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ip 101 (163)
T 1lr5_A 43 VWLQTISPGQRTPIHR-HSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIP 101 (163)
T ss_dssp EEEEEECTTCBCCEEE-ESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEEC
T ss_pred EEEEEECCCCcCCCeE-CCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEEEC
Confidence 4456788887654333 235689999999999999771 45579999887543
No 109
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=46.83 E-value=56 Score=32.28 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=38.5
Q ss_pred cEEEEecCCCeEEeecccc-cCeEEEEEeceEEEEe---CC-EEEeecCCCCeeccc
Q psy709 189 IKTQTLQPGEAYAVQNITR-TDRLALLLTGKAYVAQ---DK-QYLHPIATGEFLDSP 240 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp-~d~L~lLLSGrVrVs~---dg-~~Lh~I~PGqFfGE~ 240 (508)
....++++|...-..- .+ .+.+.+|++|++++.. +| +..+.+++||.+-=|
T Consensus 54 ~~~~~l~pg~~~~~H~-H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip 109 (361)
T 2vqa_A 54 GVYMSLEPGAIRELHW-HANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFP 109 (361)
T ss_dssp EEEEEECTTCEEEEEE-CTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEEEC
T ss_pred eEEEEEcCCCCCCcee-CCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEEEC
Confidence 4567788998765443 33 6899999999999998 55 355789999987533
No 110
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=45.89 E-value=29 Score=33.47 Aligned_cols=70 Identities=14% Similarity=0.337 Sum_probs=47.4
Q ss_pred cEEEEecCCCeEEe-ecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEe-ccEEEEE
Q psy709 189 IKTQTLQPGEAYAV-QNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAH-TTCRIMY 266 (508)
Q Consensus 189 a~vr~lkKGe~la~-EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~-EdcrVL~ 266 (508)
....++++|..+-. .- -+.+++.+|++|++++..+|+. +.+++||++-=+.-. .......-. +++++++
T Consensus 184 ~~~~~l~pg~~~~~~H~-H~~~E~~yVl~G~~~~~i~~~~-~~l~~GD~i~i~~~~-------~H~~~n~~~~~~~~~l~ 254 (274)
T 1sef_A 184 MHILSFEPGASHAYIET-HVQEHGAYLISGQGMYNLDNEW-YPVEKGDYIFMSAYV-------PQAAYAVGREEPLMYVY 254 (274)
T ss_dssp EEEEEECTTCBCSSCBC-CSCCEEEEEEECEEEEEETTEE-EEEETTCEEEECTTC-------CEEEEEECSSSCEEEEE
T ss_pred EEEEEECCCCccCccee-ccCeEEEEEEeCEEEEEECCEE-EEECCCCEEEECCCC-------CEEEEeCCCCCCEEEEE
Confidence 45668999987754 33 3457899999999999999876 478999887432221 111222223 6688887
Q ss_pred E
Q psy709 267 W 267 (508)
Q Consensus 267 w 267 (508)
+
T Consensus 255 ~ 255 (274)
T 1sef_A 255 S 255 (274)
T ss_dssp E
T ss_pred E
Confidence 7
No 111
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=43.63 E-value=25 Score=33.96 Aligned_cols=71 Identities=10% Similarity=0.149 Sum_probs=44.4
Q ss_pred EEEEecCCCeEEeeccc-ccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEe
Q psy709 190 KTQTLQPGEAYAVQNIT-RTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQ 268 (508)
Q Consensus 190 ~vr~lkKGe~la~EGkt-p~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~ 268 (508)
...++++|......-.. ..+++.+|++|++++..+|+. +.++|||.+-=++=. .....-...++++++.+.
T Consensus 65 ~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~~~~~-~~L~~GD~~~~~~~~-------~H~~~N~~~~~~~~l~v~ 136 (274)
T 1sef_A 65 YIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQET-HELEAGGYAYFTPEM-------KMYLANAQEADTEVFLYK 136 (274)
T ss_dssp EEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEECSSCE-EEEETTEEEEECTTS-------CCEEEESSSSCEEEEEEE
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEECCEE-EEECCCCEEEECCCC-------CEEEEeCCCCCEEEEEEE
Confidence 45677888655433211 247899999999999998875 479999877522211 111112224678887765
No 112
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=42.32 E-value=16 Score=31.56 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=30.7
Q ss_pred EEecCCCeEEeecccccCeEEEEEeceEEEEe-CCEEEeecCCCCeec
Q psy709 192 QTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ-DKQYLHPIATGEFLD 238 (508)
Q Consensus 192 r~lkKGe~la~EGktp~d~L~lLLSGrVrVs~-dg~~Lh~I~PGqFfG 238 (508)
-+.++|+.-.... ..+.+.+|++|++++.. +|+. ..++|||.+-
T Consensus 54 w~~~pG~~~~~~~--~~~E~~~Vl~G~~~l~~~~g~~-~~l~~GD~~~ 98 (123)
T 3bcw_A 54 WESTSGSFQSNTT--GYIEYCHIIEGEARLVDPDGTV-HAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEEECCCT--TEEEEEEEEEEEEEEECTTCCE-EEEETTCEEE
T ss_pred EEECCCceeeEcC--CCcEEEEEEEEEEEEEECCCeE-EEECCCCEEE
Confidence 3455665443322 22799999999999998 5554 4689998875
No 113
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=41.81 E-value=34 Score=33.00 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=38.9
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccc
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPE 241 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e 241 (508)
.-+..+.+|..|=.-- .+.+++++|+||.+++..+|..-..++|||.+--++
T Consensus 134 lG~v~l~PG~~yP~Hs-Hp~EEiy~VLsG~~e~~v~~g~~~~l~pGd~v~ips 185 (217)
T 4b29_A 134 VTVGYWGPGLDYGWHE-HLPEELYSVVSGRALFHLRNAPDLMLEPGQTRFHPA 185 (217)
T ss_dssp EEEEEECSSCEEEEEE-CSSEEEEEEEEECEEEEETTSCCEEECTTCEEEECT
T ss_pred EEEEEECCCCcCCCCC-CCCceEEEEEeCCEEEEECCCCEEecCCCCEEEcCC
Confidence 3456688887766555 567999999999999999854445688998876443
No 114
>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12
Probab=41.49 E-value=51 Score=31.83 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=44.7
Q ss_pred EEecCCCeEEeecccccC-eEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEehH
Q psy709 192 QTLQPGEAYAVQNITRTD-RLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQRS 270 (508)
Q Consensus 192 r~lkKGe~la~EGktp~d-~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~Re 270 (508)
.++++|+.+...- .+.. ..-++++|.++| +|+. +.+||.+. ++ .++ .++++|.++++++.++-.
T Consensus 165 ~~l~~g~~~~~~~-~~~~~~~~~v~~G~v~v--~g~~---l~~gd~~~----~~---~~~--~l~l~a~~~a~~Ll~~~~ 229 (242)
T 1tq5_A 165 WALLKDEQSVHQI-AAERRVWIQVVKGNVTI--NGVK---ASTSDGLA----IW---DEQ--AISIHADSDSEVLLFDLP 229 (242)
T ss_dssp EEECTTCEEEECC-CTTCEEEEEEEESEEEE--TTEE---EETTCEEE----EE---SCS--CEEEEESSSEEEEEEEEC
T ss_pred EEECCCCEEEeec-CCCcEEEEEEccCcEEE--CCEE---eCCCCEEE----EC---CCC--eEEEEeCCCCEEEEEECC
Confidence 5688999887765 2323 446678999988 4543 55665443 22 122 367889999999999876
Q ss_pred HHHHHHhc
Q psy709 271 TLEYLFVK 278 (508)
Q Consensus 271 ~L~~Ll~k 278 (508)
.+....++
T Consensus 230 ~~~~~~~~ 237 (242)
T 1tq5_A 230 PVSGRVEH 237 (242)
T ss_dssp CC-----C
T ss_pred ccCChhhc
Confidence 65544433
No 115
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=40.89 E-value=17 Score=31.67 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=31.8
Q ss_pred EecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeec
Q psy709 193 TLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLD 238 (508)
Q Consensus 193 ~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfG 238 (508)
+..+|..=.... ..++...|++|+++++.++-.-..+++||.+-
T Consensus 48 e~tPG~~~~~~~--~~~E~~~iLeG~~~lt~ddG~~~~l~aGD~~~ 91 (116)
T 3es4_A 48 MAEPGIYNYAGR--DLEETFVVVEGEALYSQADADPVKIGPGSIVS 91 (116)
T ss_dssp EECSEEEEECCC--SEEEEEEEEECCEEEEETTCCCEEECTTEEEE
T ss_pred ecCCceeECeeC--CCcEEEEEEEeEEEEEeCCCeEEEECCCCEEE
Confidence 566665443333 33689999999999998654456789998775
No 116
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=40.85 E-value=16 Score=30.37 Aligned_cols=63 Identities=17% Similarity=0.323 Sum_probs=38.3
Q ss_pred HHHHHHhcccccEEEE-ecCCCeEEee--cccccCeEEEEEeceEEEEeCCEEE-eecCCCCeeccc
Q psy709 178 LQFKKLVNDQVIKTQT-LQPGEAYAVQ--NITRTDRLALLLTGKAYVAQDKQYL-HPIATGEFLDSP 240 (508)
Q Consensus 178 eqf~~Ll~c~~a~vr~-lkKGe~la~E--Gktp~d~L~lLLSGrVrVs~dg~~L-h~I~PGqFfGE~ 240 (508)
+.++.+.++...++.. ..+|+..... -..+.+.+.+|++|++++..+|+.- ..++|||.+-=|
T Consensus 20 ~~~~~l~~~~~~~i~~i~~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~~~~~~~~~l~~Gd~i~ip 86 (112)
T 2opk_A 20 EIFQPLLERKGLKIERIISNGQASPPGFWYDSPQDEWVMVVSGSAGIECEGDTAPRVMRPGDWLHVP 86 (112)
T ss_dssp CEEEEEEEETTEEEEEEEESSCCCCTTCCBCCSSEEEEEEEESCEEEEETTCSSCEEECTTEEEEEC
T ss_pred ceEEEeecCCCEEEEEEEeCCccCCCCccccCCccEEEEEEeCeEEEEECCEEEEEEECCCCEEEEC
Confidence 3344455444444433 3345443221 1123478999999999999988752 468999887643
No 117
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=40.83 E-value=73 Score=31.85 Aligned_cols=74 Identities=14% Similarity=0.079 Sum_probs=48.8
Q ss_pred ccEEEEecCCCeEEeeccccc-CeEEEEEeceEEEEeC---C-EEEeecCCCCeecccccccccccCCceeEEEEEeccE
Q psy709 188 VIKTQTLQPGEAYAVQNITRT-DRLALLLTGKAYVAQD---K-QYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTC 262 (508)
Q Consensus 188 ~a~vr~lkKGe~la~EGktp~-d~L~lLLSGrVrVs~d---g-~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~Edc 262 (508)
.....++++|......- .+. +++.+|++|++++..+ | ...+.+++||.+-=+.... ........+++
T Consensus 258 ~~~~~~l~pG~~~~~h~-H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~ip~~~~-------H~~~n~~~~~~ 329 (385)
T 1j58_A 258 ASALVTVEPGAMRELHW-HPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMG-------HYVENIGDEPL 329 (385)
T ss_dssp EEEEEEECTTCEEEEEE-CSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEECTTCB-------EEEEECSSSCE
T ss_pred EEEEEEECCCcccCcee-CCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEEECCCCe-------EEEEECCCCCE
Confidence 35667899998876654 344 8999999999999864 3 2556789999886444333 11111224577
Q ss_pred EEEEEeh
Q psy709 263 RIMYWQR 269 (508)
Q Consensus 263 rVL~w~R 269 (508)
+++.+-.
T Consensus 330 ~~l~v~~ 336 (385)
T 1j58_A 330 VFLEIFK 336 (385)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 7777644
No 118
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=40.48 E-value=30 Score=30.38 Aligned_cols=54 Identities=11% Similarity=0.015 Sum_probs=38.6
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEE--eecCCCCeeccccccc
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYL--HPIATGEFLDSPEFES 244 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~L--h~I~PGqFfGE~e~~s 244 (508)
....++++|..+-.-. -+.+...+|++|+.+.. +|... +.+++|+++-.|.=..
T Consensus 46 ~~~~~~~pG~~~p~H~-H~~~ee~~VL~G~~~~~-~g~~~~~~~~~~Gd~~~~p~g~~ 101 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHV-HVGPGEYFLTKGKMDVR-GGKAAGGDTAIAPGYGYESANAR 101 (145)
T ss_dssp EEEEEECTTEEECCEE-ESSCEEEEEEEEEEEET-TCGGGTSEEEESSEEEEECTTCE
T ss_pred EEEEEECCCCCCCccC-CCCCEEEEEEEeEEEEc-CCCEecceEeCCCEEEEECcCCc
Confidence 4567799999887766 44577799999999964 33333 4678888887765444
No 119
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=40.05 E-value=44 Score=33.49 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=39.3
Q ss_pred ccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CCEE-EeecCCCCeeccc
Q psy709 188 VIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DKQY-LHPIATGEFLDSP 240 (508)
Q Consensus 188 ~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg~~-Lh~I~PGqFfGE~ 240 (508)
.....++++|...-..- .+.+++.+|++|++++.. +|+. .+.+++||++-=|
T Consensus 80 ~~~~~~l~pg~~~~~H~-H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~ip 135 (385)
T 1j58_A 80 ASVNMRLKPGAIRELHW-HKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFP 135 (385)
T ss_dssp EEEEEEECTTCEEEEEE-ESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEEC
T ss_pred EEEEEEECCCCCCCCcc-CChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEEEC
Confidence 35678899999665544 346899999999999988 5653 4689999887533
No 120
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=39.22 E-value=22 Score=35.88 Aligned_cols=70 Identities=6% Similarity=0.040 Sum_probs=48.3
Q ss_pred CCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEecc-EEEEEEeh--HHHH
Q psy709 197 GEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTT-CRIMYWQR--STLE 273 (508)
Q Consensus 197 Ge~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~Ed-crVL~w~R--e~L~ 273 (508)
|+.+-.-- .+.|.+.+|++|+++|..+|+.-+.+++||.+== |+. . +-++.|.++ .+++++.+ +.+.
T Consensus 262 g~~~~~h~-~~~~~~~~vleG~~~i~i~g~~~~~l~~Gd~~~i------Pag-~--~h~~~~~~~~~~~l~~~~g~~g~~ 331 (350)
T 1juh_A 262 TVTVPTWS-FPGACAFQVQEGRVVVQIGDYAATELGSGDVAFI------PGG-V--EFKYYSEAYFSKVLFVSSGSDGLD 331 (350)
T ss_dssp TSCCCCBC-CSSCEEEEEEESCEEEEETTSCCEEECTTCEEEE------CTT-C--CEEEEESSSSEEEEEEEESSSSHH
T ss_pred CCCCCccc-CCCcEEEEEEeeEEEEEECCeEEEEeCCCCEEEE------CCC-C--CEEEEecCCeEEEEEEecCccchh
Confidence 44554444 5678999999999999999954678999987742 221 2 234555544 88888887 6676
Q ss_pred HHH
Q psy709 274 YLF 276 (508)
Q Consensus 274 ~Ll 276 (508)
..+
T Consensus 332 ~~~ 334 (350)
T 1juh_A 332 QNL 334 (350)
T ss_dssp HHH
T ss_pred hee
Confidence 553
No 121
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=39.08 E-value=53 Score=30.34 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=42.9
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeeccccccc-ccccCCceeEEEEEeccEEEEEE
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFES-RANSENKFKVSIIAHTTCRIMYW 267 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s-~pss~~~fqVTI~A~EdcrVL~w 267 (508)
.....+++|..+-... -+...+.+|++|..+ ++. ....+|+++=.|.=.. .|..+ ..++|.++..
T Consensus 127 v~l~~~~pG~~~p~H~-H~g~E~~~VL~G~f~---de~--~~~~~Gd~~~~p~g~~H~p~a~--------~~~gc~~l~~ 192 (195)
T 2q1z_B 127 ARLLWIPGGQAVPDHG-HRGLELTLVLQGAFR---DET--DRFGAGDIEIADQELEHTPVAE--------RGLDCICLAA 192 (195)
T ss_dssp EEEEEECTTCBCCCCC-CSSCEEEEEEESEEE---CSS--SEEETTCEEEECSSCCCCCEEC--------SSSCEEEEEE
T ss_pred EEEEEECCCCCCCCcC-CCCeEEEEEEEEEEE---CCc--EEECCCeEEEeCcCCccCCEeC--------CCCCEEEEEE
Confidence 4566788888888777 467899999999866 332 2467888876654444 22221 1667877654
No 122
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=38.11 E-value=29 Score=29.04 Aligned_cols=30 Identities=13% Similarity=-0.001 Sum_probs=25.5
Q ss_pred CeEEEEEeceEEEEeCC-EEEeecCCCCeecc
Q psy709 209 DRLALLLTGKAYVAQDK-QYLHPIATGEFLDS 239 (508)
Q Consensus 209 d~L~lLLSGrVrVs~dg-~~Lh~I~PGqFfGE 239 (508)
+.+.++++|++++..+| +. +.+.|||.+--
T Consensus 65 ~E~~~vl~G~~~~~~~~~~~-~~l~~Gd~~~i 95 (134)
T 2o8q_A 65 FQLFYVLRGWVEFEYEDIGA-VMLEAGGSAFQ 95 (134)
T ss_dssp CEEEEEEESEEEEEETTTEE-EEEETTCEEEC
T ss_pred cEEEEEEeCEEEEEECCcEE-EEecCCCEEEE
Confidence 78999999999999988 54 57999988754
No 123
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=37.15 E-value=1.6e+02 Score=26.84 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=37.4
Q ss_pred cEEEEecCCCeEEeecccc-cCeEEEEEeceEEEEeC------CE-EEeecCCCCeecccc
Q psy709 189 IKTQTLQPGEAYAVQNITR-TDRLALLLTGKAYVAQD------KQ-YLHPIATGEFLDSPE 241 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp-~d~L~lLLSGrVrVs~d------g~-~Lh~I~PGqFfGE~e 241 (508)
....++++|...-.-- .+ .+++.+|++|++++... ++ ..+.+++||.+--|.
T Consensus 74 ~~~~~l~pg~~~~~H~-H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP~ 133 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHI-HPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPR 133 (201)
T ss_dssp EEEEEECTTCEEEEEE-CTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEECT
T ss_pred EEEEEECCCCCCCCeE-CCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEECC
Confidence 4566889998665443 33 47999999999999763 33 267899999886443
No 124
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=35.72 E-value=75 Score=31.22 Aligned_cols=73 Identities=23% Similarity=0.319 Sum_probs=50.0
Q ss_pred cccccEEEEecCCCeEEe-ecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEE
Q psy709 185 NDQVIKTQTLQPGEAYAV-QNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCR 263 (508)
Q Consensus 185 ~c~~a~vr~lkKGe~la~-EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~Edcr 263 (508)
.+-...+.++++|..+-. |- ...++-.+|++|+.++.-+|.. +.+++||++==++... -....+-.|+++
T Consensus 184 ~d~~~~~~t~~PG~~~p~~e~-H~~eh~~~vL~G~g~y~l~~~~-~~V~~GD~i~~~~~~~-------h~~~n~G~e~~~ 254 (266)
T 4e2q_A 184 YDFNIHTMDFQPGEFLNVKEV-HYNQHGLLLLEGQGIYRLGDNW-YPVQAGDVIWMAPFVP-------QWYAALGKTRSR 254 (266)
T ss_dssp CSEEEEEEEECTTCBCSSCCC-CSCCEEEEEEECEEEEEETTEE-EEEETTCEEEECTTCC-------EEEEEESSSCEE
T ss_pred cceEEEEEEECCCcCcCCceE-cccceEEEEEeceEEEEECCEE-EEecCCCEEEECCCCc-------EEEEeCCCCCEE
Confidence 333466788999999863 55 3457899999999999987764 4789999885433332 112223357788
Q ss_pred EEE
Q psy709 264 IMY 266 (508)
Q Consensus 264 VL~ 266 (508)
++.
T Consensus 255 yl~ 257 (266)
T 4e2q_A 255 YLL 257 (266)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 125
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=35.42 E-value=58 Score=29.35 Aligned_cols=55 Identities=24% Similarity=0.277 Sum_probs=37.2
Q ss_pred ccCeEEEEEeceEEEEeCCE-------EEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEehH
Q psy709 207 RTDRLALLLTGKAYVAQDKQ-------YLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQRS 270 (508)
Q Consensus 207 p~d~L~lLLSGrVrVs~dg~-------~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~Re 270 (508)
..|.+++|++|++++..++. ..-.++||+++-= |..-.- +-.|.++|+++.+..+
T Consensus 49 ~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvV------PkGveH---~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 49 STDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNV------PAECWF---YSITQKDTKMMYVQDS 110 (140)
T ss_dssp SCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEE------CTTCEE---EEEECTTCEEEEEEES
T ss_pred CCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEe------CCCccC---cccCCCceEEEEEEeC
Confidence 45999999999999977532 2345799988752 222111 2445778888888765
No 126
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=33.42 E-value=66 Score=31.19 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=47.1
Q ss_pred EEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEehH
Q psy709 191 TQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQRS 270 (508)
Q Consensus 191 vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~Re 270 (508)
..++ +|+....+= +.|+..+|++|+++|+.+|+.++ ++|||.+- +- . + -..+.++.++.|.++-...
T Consensus 51 ~~~~-~g~~~v~~~--p~dE~~~VleG~~~lt~~g~~~~-~~~Gd~~~----ip--~--G-~~~~w~~~~~~~~~y~~~~ 117 (238)
T 3myx_A 51 IVEF-GTALSVEAY--PYTEMLVMHRGSVTLTSGTDSVT-LSTGESAV----IG--R--G-TQVRIDAQPESLWAFCAST 117 (238)
T ss_dssp EEEE-CSEEEESSC--SSEEEEEEEESEEEEEETTEEEE-EETTCEEE----EC--T--T-CCEEEEECTTEEEEEEEEC
T ss_pred EEEe-ccccccccC--CCcEEEEEEEeEEEEECCCeEEE-EcCCCEEE----EC--C--C-CEEEEEecCCeEEEEEecc
Confidence 4455 777666544 56899999999999988888875 89997664 22 1 1 2456777788877665443
No 127
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=33.34 E-value=87 Score=32.50 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=55.0
Q ss_pred ccEEEEecCCCeEEeecccccCeEEEEEeceEEE-EeCCEEEeecCCCCeeccccccc-cccc-CCceeEEEEEeccEEE
Q psy709 188 VIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYV-AQDKQYLHPIATGEFLDSPEFES-RANS-ENKFKVSIIAHTTCRI 264 (508)
Q Consensus 188 ~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrV-s~dg~~Lh~I~PGqFfGE~e~~s-~pss-~~~fqVTI~A~EdcrV 264 (508)
.+....+++|+.+-..- -..+.+++|++|+-.. ..+|+.. .+++||++=-|.+.. .-.. .+ .++.++
T Consensus 124 ~a~~~~l~PG~~~~~Hr-H~~~ev~~IleG~G~~t~v~G~~~-~~~~GD~i~~P~g~~H~~~N~~g--------de~l~~ 193 (394)
T 3bu7_A 124 FSGIQTMKAGERAGAHR-HAASALRFIMEGSGAYTIVDGHKV-ELGANDFVLTPNGTWHEHGILES--------GTECIW 193 (394)
T ss_dssp EEEEEEECTTCBCCCEE-ESSCEEEEEEECSCEEEEETTEEE-EECTTCEEEECTTCCEEEEECTT--------CCCEEE
T ss_pred EEEEEEECCCCCcCCcc-CCcceEEEEEEeeEEEEEECCEEE-EEcCCCEEEECcCCCEEEEcCCC--------CCCEEE
Confidence 46789999999997776 3457899999999866 5577654 699999998766665 1111 22 567788
Q ss_pred EEEehHHHHHH
Q psy709 265 MYWQRSTLEYL 275 (508)
Q Consensus 265 L~w~Re~L~~L 275 (508)
++....-|.+.
T Consensus 194 l~v~d~Pl~~~ 204 (394)
T 3bu7_A 194 QDGLDIPLTNC 204 (394)
T ss_dssp EEEECHHHHHH
T ss_pred EEcccchhhhh
Confidence 87555555433
No 128
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=32.48 E-value=50 Score=26.92 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=35.5
Q ss_pred EEEEecCCCeEEeecccccC-eEEEEEeceEEEEeCC--EEEeecCCCCeecccc
Q psy709 190 KTQTLQPGEAYAVQNITRTD-RLALLLTGKAYVAQDK--QYLHPIATGEFLDSPE 241 (508)
Q Consensus 190 ~vr~lkKGe~la~EGktp~d-~L~lLLSGrVrVs~dg--~~Lh~I~PGqFfGE~e 241 (508)
+..+++||+-+-..- -+.+ ..+++++|+++|..++ .....+.+||.+--|.
T Consensus 20 ~r~~i~PG~~~~~H~-H~~~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~~ip~ 73 (98)
T 3lag_A 20 TEWRLPPGSATGHHT-HGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSYARKA 73 (98)
T ss_dssp EEEEECTTEECCSEE-CCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCEEECT
T ss_pred EEEEECCCCccCcEE-CCCcEEEEEEeccEEEEEeCCCceEEEEecCCcEEEEcC
Confidence 345689999888776 3434 5777889999998855 2444678888776543
No 129
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=31.53 E-value=66 Score=33.40 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=40.2
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CCEEEeecCCCCeeccc
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DKQYLHPIATGEFLDSP 240 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg~~Lh~I~PGqFfGE~ 240 (508)
....++++|...-.- ....+++++|++|++++.. ++...+.+++||.+--|
T Consensus 51 ~~~~~l~PGg~~~pH-h~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP 104 (416)
T 1uij_A 51 IVQFQSKPNTILLPH-HADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIP 104 (416)
T ss_dssp EEEEEECTTEEEEEE-EESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEEC
T ss_pred EEEEEeccCcCcccc-cCCCceEEEEEeeEEEEEEEECCCCeEEEecCCCEEEEC
Confidence 667889999877666 3556899999999999976 34556789999988653
No 130
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=28.79 E-value=2.1e+02 Score=28.63 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=53.4
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEe
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQ 268 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~ 268 (508)
.++.-+-+|+....+. +. |.+...++|...|+.+|++. .+.+||.+-= |+ .. ..+.++.++|+.+.+.
T Consensus 209 teV~l~G~Ges~~~~~-~~-d~wiWqLEGss~Vt~~~q~~-~L~~~DsLLI------pa-~~--~y~~~r~~gsv~L~I~ 276 (286)
T 2qnk_A 209 TQVIAYGQGSSEGLRQ-NV-DVWLWQLEGSSVVTMGGRRL-SLAPDDSLLV------LA-GT--SYAWERTQGSVALSVT 276 (286)
T ss_dssp EEEEEECSEEEEECCC-SS-CEEEEEEESCEEEEETTEEE-EECTTEEEEE------CT-TC--CEEEEECTTCEEEEEE
T ss_pred eEEEEEcCCccccccC-cC-cEEEEEEcCceEEEECCeEE-eccCCCEEEe------cC-CC--eEEEEecCCeEEEEEE
Confidence 5666688999888887 44 99999999999999999887 4777765542 22 22 2458899999999886
Q ss_pred hH
Q psy709 269 RS 270 (508)
Q Consensus 269 Re 270 (508)
-+
T Consensus 277 ~~ 278 (286)
T 2qnk_A 277 QD 278 (286)
T ss_dssp EC
T ss_pred EC
Confidence 44
No 131
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=28.40 E-value=58 Score=29.72 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=44.1
Q ss_pred cEEEEecCCCeEE----eecc-cc---cCeEEEEEeceEEEEeCCEE----EeecCCCCeecccccccccccCCceeEEE
Q psy709 189 IKTQTLQPGEAYA----VQNI-TR---TDRLALLLTGKAYVAQDKQY----LHPIATGEFLDSPEFESRANSENKFKVSI 256 (508)
Q Consensus 189 a~vr~lkKGe~la----~EGk-tp---~d~L~lLLSGrVrVs~dg~~----Lh~I~PGqFfGE~e~~s~pss~~~fqVTI 256 (508)
....++++|...- .... .+ .+.+++|++|++.+..+++. .+.++|||.+-=+.-.. ....-
T Consensus 69 ~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip~g~~-------H~~~N 141 (190)
T 1x82_A 69 FATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWA-------HRTVN 141 (190)
T ss_dssp EEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCE-------EEEEE
T ss_pred EEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEECCCCe-------EEEEE
Confidence 4456888887621 1110 11 26999999999999886543 56799999875443332 11111
Q ss_pred EEeccEEEEEEeh
Q psy709 257 IAHTTCRIMYWQR 269 (508)
Q Consensus 257 ~A~EdcrVL~w~R 269 (508)
.-.++++++.+-.
T Consensus 142 ~g~~~~~~l~v~~ 154 (190)
T 1x82_A 142 IGDEPFIFLAIYP 154 (190)
T ss_dssp CSSSCEEEEEEEE
T ss_pred CCcccEEEEEEEC
Confidence 2245677766643
No 132
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=27.59 E-value=72 Score=33.51 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=38.7
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CCEEEeecCCCCeeccc
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DKQYLHPIATGEFLDSP 240 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg~~Lh~I~PGqFfGE~ 240 (508)
....++++|...-.. ....+++.+|++|++++.. ++...+.+++||.+--|
T Consensus 88 ~~~~~l~Pgg~~~pH-h~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~~P 141 (445)
T 2cav_A 88 VLEYCSKPNTLLLPH-HSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQ 141 (445)
T ss_dssp EEEEEECSSEEEEEE-EESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEEC
T ss_pred EEEEEECCCcCccCc-CCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCCEEEEC
Confidence 455678888776665 3456899999999999975 44577789999988654
No 133
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=24.16 E-value=87 Score=29.19 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=37.0
Q ss_pred ccCeEEEEEeceEEEEeC--C-EEEeecCCCCeecccccccccccCCceeEEEEEec-cEEEEEEehHHH
Q psy709 207 RTDRLALLLTGKAYVAQD--K-QYLHPIATGEFLDSPEFESRANSENKFKVSIIAHT-TCRIMYWQRSTL 272 (508)
Q Consensus 207 p~d~L~lLLSGrVrVs~d--g-~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~E-dcrVL~w~Re~L 272 (508)
+.|.++++++|.+.+..+ | ..--.+++||++-=|.=.. . +-+|.+ ++..+.+.|++.
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~lP~gvp--H-------~P~r~~~e~~~lviE~~r~ 114 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVR--H-------SPQRPEAGSACLVIERQRP 114 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCC--E-------EEEBCCTTCEEEEEEECCC
T ss_pred CCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEEeCCCCC--c-------CccccCCCCEEEEEEeCCC
Confidence 568999999999999773 3 2223589999987543332 0 122344 677777766554
No 134
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=24.04 E-value=69 Score=30.77 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=32.8
Q ss_pred EEecCCCeEEeecccccCeEEEEEeceEEEEe--------CCE-----------EEeecCCCCeeccc
Q psy709 192 QTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ--------DKQ-----------YLHPIATGEFLDSP 240 (508)
Q Consensus 192 r~lkKGe~la~EGktp~d~L~lLLSGrVrVs~--------dg~-----------~Lh~I~PGqFfGE~ 240 (508)
.++++|...-.--....+++++|++|++++.. +++ ..+.++|||.+-=|
T Consensus 48 ~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP 115 (239)
T 2xlg_A 48 AQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSP 115 (239)
T ss_dssp EEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEEC
T ss_pred EEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEEC
Confidence 35677764322111114689999999999988 666 16689999987543
No 135
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=23.93 E-value=99 Score=32.31 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=40.8
Q ss_pred ccEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CCEEEeecCCCCeeccc
Q psy709 188 VIKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DKQYLHPIATGEFLDSP 240 (508)
Q Consensus 188 ~a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg~~Lh~I~PGqFfGE~ 240 (508)
.....++++|...-.- -...+.+++|++|++++.. ++.....+++||.+-=|
T Consensus 62 s~~~~~l~PGg~~~pH-h~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP 116 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPH-HADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQKIP 116 (434)
T ss_dssp EEEEEEECTTEEEEEE-EESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEEC
T ss_pred EEEEEEecCCcCccCc-cCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEEEEC
Confidence 3567889999888777 3557899999999999876 23566789999988643
No 136
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=22.42 E-value=59 Score=29.65 Aligned_cols=49 Identities=12% Similarity=0.236 Sum_probs=34.4
Q ss_pred CeEEEEEe--ceEEEEeCCEEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEeh
Q psy709 209 DRLALLLT--GKAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQR 269 (508)
Q Consensus 209 d~L~lLLS--GrVrVs~dg~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~R 269 (508)
+.+++|++ |+.++..+|+. +.++|||.+-=|.= ....+ . .+++++++..
T Consensus 67 ~E~~yVLe~~G~g~v~idge~-~~l~~GD~v~IPpg-------~~H~i--~--g~l~~L~I~~ 117 (157)
T 4h7l_A 67 QEIYVVLDHAAHATIELNGQS-YPLTKLLAISIPPL-------VRHRI--V--GEATIINIVS 117 (157)
T ss_dssp EEEEEEEEECTTCEEEETTEE-EECCTTEEEEECTT-------CCEEE--E--SCEEEEEEEE
T ss_pred cEEEEEEecCcEEEEEECCEE-EEeCCCCEEEECCC-------CeEee--E--CCEEEEEEEC
Confidence 57999999 99999999986 47999987753211 12222 1 3788888753
No 137
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=21.62 E-value=1e+02 Score=28.76 Aligned_cols=57 Identities=11% Similarity=-0.024 Sum_probs=37.7
Q ss_pred ccCeEEEEEeceEEEEeC--C------EEEeecCCCCeecccccccccccCCceeEEEEEeccEEEEEEehHHHH
Q psy709 207 RTDRLALLLTGKAYVAQD--K------QYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQRSTLE 273 (508)
Q Consensus 207 p~d~L~lLLSGrVrVs~d--g------~~Lh~I~PGqFfGE~e~~s~pss~~~fqVTI~A~EdcrVL~w~Re~L~ 273 (508)
+.|.++++++|.+.+..+ | +.+ .+++||+|-=|.=.. . +-++.+++..+.+.|++..
T Consensus 53 ~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv-~i~eGdmfllP~gvp--H-------sP~r~~e~v~lviErkR~~ 117 (176)
T 1zvf_A 53 PTPEWFYQKKGSMLLKVVDETDAEPKFIDI-IINEGDSYLLPGNVP--H-------SPVRFADTVGIVVEQDRPG 117 (176)
T ss_dssp SSCEEEEEEESCEEEEEEECSSSSCEEEEE-EECTTEEEEECTTCC--E-------EEEECTTCEEEEEEECCCS
T ss_pred CCceEEEEEeCEEEEEEEcCCCcccceeeE-EECCCCEEEcCCCCC--c-------CCcccCCcEEEEEEecCCC
Confidence 457999999999999773 3 233 589998887443222 1 1233567777777776543
No 138
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=20.17 E-value=1.2e+02 Score=31.31 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=38.6
Q ss_pred cEEEEecCCCeEEeecccccCeEEEEEeceEEEEe---CCEEEeecCCCCe
Q psy709 189 IKTQTLQPGEAYAVQNITRTDRLALLLTGKAYVAQ---DKQYLHPIATGEF 236 (508)
Q Consensus 189 a~vr~lkKGe~la~EGktp~d~L~lLLSGrVrVs~---dg~~Lh~I~PGqF 236 (508)
....++++|......- ...+++.+|++|+.+|.. ++.....+++||.
T Consensus 54 ~~~~~l~pgg~~~ph~-~~a~ei~yVl~G~~~v~~v~~~~~~~~~l~~GDv 103 (397)
T 2phl_A 54 LVEFRSKPETLLLPQQ-ADAELLLVVRSGSAILVLVKPDDRREYFFLTSDN 103 (397)
T ss_dssp EEEEEECSSEEEEEEE-ESEEEEEEEEESEEEEEEEETTTEEEEEEEESSC
T ss_pred EEEEEECCCcCccCEe-cCCCeEEEEEeeeEEEEEEeCCCcEEEEECCCCc
Confidence 6678899998876665 456899999999999976 5566788999998
Done!