RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy709
         (508 letters)



>gnl|CDD|203101 pfam04831, Popeye, Popeye protein conserved region.  The function
           of Popeye proteins is not well understood. They are
           predominantly expressed in cardiac and skeletal muscle.
           This family represents a conserved region which includes
           three potential transmembrane domains.
          Length = 154

 Score =  144 bits (365), Expect = 4e-41
 Identities = 63/146 (43%), Positives = 92/146 (63%), Gaps = 1/146 (0%)

Query: 161 DFEEVYTNLFEPFKVSRLQFKKLVNDQVIKTQTLQPGEAYAVQNITRTDRLALLLTGKAY 220
           + E +Y  LF P  V    FK++      +  TL+ G+ YAV+  T  DRL+LLL+G+  
Sbjct: 1   ELEALYKALFLPLHVPLEVFKEITGCFECEVHTLKKGQTYAVEGKTPIDRLSLLLSGRIR 60

Query: 221 VAQDKQYLHPIATGEFLDSPEFES-RANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKE 279
           V+QD Q+LH I   +FLDSPE+ES R + E KF+V++ A T CR + W+R  L  L  KE
Sbjct: 61  VSQDGQFLHYIFPHQFLDSPEWESLRPSEEGKFQVTLTADTDCRYLSWRRKRLYLLLAKE 120

Query: 280 TYLANVMTVLVAKDITTKLYAMNNKV 305
            Y+A + +VL+  DI  KLY++N+K+
Sbjct: 121 RYIARLFSVLLGYDIAEKLYSLNDKL 146


>gnl|CDD|215515 PLN02956, PLN02956, PSII-Q subunit.
          Length = 185

 Score = 31.7 bits (72), Expect = 0.56
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 140 SINLFQLIYVLYQSRPVKFDPDFEEVYTNLFEPFKVSRLQFKKLVNDQV 188
           + NL Q +Y + Q++P K  P    +Y++LF    V++L +     D+ 
Sbjct: 119 ASNLKQDLYAIIQAKPGKDRPQLRRLYSDLFN--SVTKLDYAARDKDET 165



 Score = 31.0 bits (70), Expect = 0.88
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 467 SINLFQLIYVLYQSRPVKFDPDFEEVYTNLF 497
           + NL Q +Y + Q++P K  P    +Y++LF
Sbjct: 119 ASNLKQDLYAIIQAKPGKDRPQLRRLYSDLF 149


>gnl|CDD|185339 PRK15442, PRK15442, beta-lactamase TEM; Provisional.
          Length = 284

 Score = 32.1 bits (73), Expect = 0.56
 Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 25/162 (15%)

Query: 231 IATGEFLDSPEFESRANSENKFKV----SIIAHTTC-------RIMYWQRSTLEYLFVKE 279
           + +G+ L+S   E R    + FKV    ++++           RI Y Q   +EY  V E
Sbjct: 47  LNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTE 106

Query: 280 TYLANVMTV--LVAKDITTKLYAMNN----KVGRRTGLISSEIMTEKGSH---LDIRLPC 330
            +L + MTV  L +  IT       N     +G    L +   +   G H   LD   P 
Sbjct: 107 KHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTA--FLHNMGDHVTRLDRWEPE 164

Query: 331 VTSAIKSKERRTSMLKAVK---KNIAMEKVINSSPESGLFGW 369
           +  AI + ER T+M  A+    + +   +++  +    L  W
Sbjct: 165 LNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDW 206


>gnl|CDD|234384 TIGR03896, cyc_nuc_ocin, bacteriocin-type transport-associated
           protein.  Members of this protein family are
           uncharacterized and contain two copies of the cyclic
           nucleotide-binding domain pfam00027. Members are
           restricted to select cyanobacteria but are found
           regularly in association with a transport operon that,
           in turn, is associated with the production of putative
           bacteriocins. The models describing the transport operon
           are TIGR03794, TIGR03796, and TIGR03797.
          Length = 317

 Score = 31.8 bits (72), Expect = 0.86
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 23/130 (17%)

Query: 191 TQTLQPGEAYAVQNITRTDRLALLLTGKAYV---------AQDKQYLHPIATGEFL-DSP 240
           T  ++ G+A         D L +LL G   V               L  ++ GE + +  
Sbjct: 17  TTLIEEGKA--------ADFLFILLDGTFTVTTPQPEDNPLTRAFELARLSRGEIVGEMS 68

Query: 241 EFESRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFVKETYLANVMTVLVAKDITTKLYA 300
             E+R         +I A    R+M      L      +   A      +A  +  ++  
Sbjct: 69  LLETRPPV-----ATIKAVPKSRVMSIPVGELAAKLQSDVGFAAHFYRAIAIKLALQIQN 123

Query: 301 MNNKVGRRTG 310
            N+++ RR G
Sbjct: 124 QNHQLHRRNG 133


>gnl|CDD|234307 TIGR03676, aRF1/eRF1, peptide chain release factor 1, archaeal and
           eukaryotic forms.  Directs the termination of nascent
           peptide synthesis (translation) in response to the
           termination codons UAA, UAG and UGA. This model
           identifies both archaeal (aRF1) and eukaryotic (eRF1) of
           the protein. Also known as translation termination
           factor 1 [Protein synthesis, Translation factors].
          Length = 357

 Score = 30.7 bits (70), Expect = 1.8
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 16/74 (21%)

Query: 303 NKVGRRTGLISSEIMTEKGSHLDIRLPCVT----------SAIKSKERRTSMLKAVKKNI 352
            K GR T LIS  I  +K      ++  V           + IKSK+ R ++  A++  +
Sbjct: 14  KKKGRGTELISLYIPPDK------QISDVVKQLRDEYSQAANIKSKQTRKNVQSAIESIM 67

Query: 353 AMEKVINSSPESGL 366
              K+    PE+GL
Sbjct: 68  QRLKLYKKPPENGL 81


>gnl|CDD|224207 COG1288, COG1288, Predicted membrane protein [Function unknown].
          Length = 481

 Score = 30.7 bits (70), Expect = 2.0
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 113 SGFSFLSSWAWRVACAPDIFIWNLFFISINLFQLIYVLYQSRPVKFDPDFEEVYTNLFE 171
           +G  FLS    R+          + ++   L  +IYV + +  VK DP    VY +  E
Sbjct: 208 AGIPFLSGMGLRI----------VVWVVFTLISIIYVYWYASKVKKDPTLSLVYEDDEE 256



 Score = 30.7 bits (70), Expect = 2.0
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 440 SGFSFLSSWAWRVACAPDIFIWNLFFISINLFQLIYVLYQSRPVKFDPDFEEVYTNLFE 498
           +G  FLS    R+          + ++   L  +IYV + +  VK DP    VY +  E
Sbjct: 208 AGIPFLSGMGLRI----------VVWVVFTLISIIYVYWYASKVKKDPTLSLVYEDDEE 256


>gnl|CDD|224272 COG1353, COG1353, Predicted CRISPR-associated polymerase [Defense
           mechanisms].
          Length = 799

 Score = 30.1 bits (68), Expect = 2.9
 Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 2/67 (2%)

Query: 276 FVKETYLANVMTVLVA--KDITTKLYAMNNKVGRRTGLISSEIMTEKGSHLDIRLPCVTS 333
           F+ E         L      I      + N++     L  + I+ E G H  + LP    
Sbjct: 255 FIYEVSSKGASKALRGRSFYIELLTEDIVNRIISELNLTRANILFEGGGHFYLLLPNTEE 314

Query: 334 AIKSKER 340
             K  E 
Sbjct: 315 VRKILEE 321


>gnl|CDD|224420 COG1503, eRF1, Peptide chain release factor 1 (eRF1) [Translation,
           ribosomal structure and biogenesis].
          Length = 411

 Score = 29.6 bits (67), Expect = 4.1
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 306 GRRTGLISSEIMTEKG----SHLDIRLPCVTSAIKSKERRTSMLKAVKKNIAMEKVINSS 361
           GR T LIS  I  ++      +         S IKSK  R ++L A++  +   K    +
Sbjct: 24  GRGTELISLYIPPDRQISDVVNRLRDEYSTASNIKSKVTRKNVLSAIESAMQRLKDYCKT 83

Query: 362 PESGL 366
           PE+GL
Sbjct: 84  PENGL 88


>gnl|CDD|226832 COG4397, COG4397, Mu-like prophage major head subunit gpT [General
           function prediction only].
          Length = 308

 Score = 28.4 bits (63), Expect = 8.2
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 343 SMLKAVKKNIAMEKVINSSPESGLFGWCHNWKEFQHWL 380
           SM  +  K IA   V+ S+  S  +GW   + +F+ W+
Sbjct: 25  SMAPSQYKEIAT--VVPSTTASNTYGWLGQFPQFREWI 60


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.329    0.140    0.465 

Gapped
Lambda     K      H
   0.267   0.0766    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,262,884
Number of extensions: 2577273
Number of successful extensions: 2987
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2983
Number of HSP's successfully gapped: 49
Length of query: 508
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 407
Effective length of database: 6,457,848
Effective search space: 2628344136
Effective search space used: 2628344136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (27.2 bits)