RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy709
         (508 letters)



>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's
           yeast (Saccharomyces cerevisiae), cytosolic form [TaxId:
           4932]}
          Length = 412

 Score = 29.6 bits (65), Expect = 0.93
 Identities = 16/172 (9%), Positives = 42/172 (24%), Gaps = 2/172 (1%)

Query: 218 KAYVAQDKQYLHPIATGEFLDSPEFESRANSENKFKVSIIAHTTCRIMYWQRSTLEYLFV 277
                 D  Y          D+          +      +  +  +        +    +
Sbjct: 209 NHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHL 268

Query: 278 KETYLANVMTVLVAKDITTKLYAMNN--KVGRRTGLISSEIMTEKGSHLDIRLPCVTSAI 335
             T  A   T+  A          +           I ++++             VT + 
Sbjct: 269 ALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSS 328

Query: 336 KSKERRTSMLKAVKKNIAMEKVINSSPESGLFGWCHNWKEFQHWLFNTAHLF 387
           +  + R ++   + K        +   + G+F +     +    L  T  ++
Sbjct: 329 RITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVY 380


>d1g40a3 g.18.1.1 (A:127-184) Complement control protein {Vaccinia
          virus [TaxId: 10245]}
          Length = 58

 Score = 24.9 bits (54), Expect = 4.8
 Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 4/26 (15%)

Query: 76 CMHTFLIVG----KCQAGTWPGALSC 97
          C   + ++G     C  G W    +C
Sbjct: 31 CNSGYSLIGNSGVLCSGGEWSDPPTC 56



 Score = 24.9 bits (54), Expect = 4.8
 Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 4/26 (15%)

Query: 403 CMHTFLIVG----KCQAGTWPGALSC 424
           C   + ++G     C  G W    +C
Sbjct: 31  CNSGYSLIGNSGVLCSGGEWSDPPTC 56


>d1hcca_ g.18.1.1 (A:) Factor H, 15th and 16th modules {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 59

 Score = 24.9 bits (54), Expect = 5.2
 Identities = 9/26 (34%), Positives = 9/26 (34%), Gaps = 4/26 (15%)

Query: 76 CMHTFLIVG----KCQAGTWPGALSC 97
          C   F I G    KC    W    SC
Sbjct: 33 CFEGFGIDGPAIAKCLGEKWSHPPSC 58



 Score = 24.9 bits (54), Expect = 5.2
 Identities = 9/26 (34%), Positives = 9/26 (34%), Gaps = 4/26 (15%)

Query: 403 CMHTFLIVG----KCQAGTWPGALSC 424
           C   F I G    KC    W    SC
Sbjct: 33  CFEGFGIDGPAIAKCLGEKWSHPPSC 58


>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria
           monocytogenes [TaxId: 1639]}
          Length = 328

 Score = 26.5 bits (57), Expect = 9.4
 Identities = 4/77 (5%), Positives = 11/77 (14%), Gaps = 2/77 (2%)

Query: 7   YDVPIYFIFRHSFWKALFIFGPIFIPFSSFEGLFGWCHNWKEFQHWLFNTAHLFFFISYA 66
               ++     +            +P   +             +        LF      
Sbjct: 172 KMTLLHQDGLANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMR 231

Query: 67  L--PTNRYGLICMHTFL 81
              P      +      
Sbjct: 232 YTKPGGYLFFLVPDAMF 248


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.140    0.465 

Gapped
Lambda     K      H
   0.267   0.0433    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,040,287
Number of extensions: 99038
Number of successful extensions: 320
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 20
Length of query: 508
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 419
Effective length of database: 1,185,626
Effective search space: 496777294
Effective search space used: 496777294
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.7 bits)