BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7090
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DAK2|PACRG_MOUSE Parkin coregulated gene protein homolog OS=Mus musculus GN=Pacrg
PE=1 SV=1
Length = 241
Score = 286 bits (731), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 132/219 (60%), Positives = 170/219 (77%)
Query: 30 VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 89
V F+++ KN++ PP + + FR Y RGDFPIA+E S GNKI+WK
Sbjct: 22 VSEGFTVKAMMKNSVVRGPPVAGAFKERPAKPTTFRKCYERGDFPIALEHDSKGNKIAWK 81
Query: 90 EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 149
+I+ L+Y +YLP+FFDGL E +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNAL
Sbjct: 82 VEIEKLDYHHYLPLFFDGLSEMTFPYEFFARRGIHDMLEHGGNKILPVIPQLIIPIKNAL 141
Query: 150 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMK 209
+ RN ++IC TLKVLQHLV SS MVGEAL+PYY+QILP LN++K++N N+GD IDYSQ K
Sbjct: 142 NLRNRQIICVTLKVLQHLVVSSEMVGEALLPYYRQILPILNIFKNMNVNSGDGIDYSQQK 201
Query: 210 RENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 248
RENIGDL+QETL+ ER+GGEDA I IKYM+PTYESC+L
Sbjct: 202 RENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCLL 240
>sp|Q96M98|PACRG_HUMAN Parkin coregulated gene protein OS=Homo sapiens GN=PACRG PE=1 SV=2
Length = 296
Score = 265 bits (678), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 131/258 (50%), Positives = 171/258 (66%), Gaps = 39/258 (15%)
Query: 30 VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 89
V F+++ KN++ PP + + FR +Y RGDFPIA+E S GNKI+WK
Sbjct: 38 VSEGFTVKAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWK 97
Query: 90 EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 149
+I+ L+Y +YLP+FFDGL E +PY+FFA +GIHD+LE+G +KI+PVLP LI+PIKNAL
Sbjct: 98 VEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNAL 157
Query: 150 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNK------------ 197
+ RN +VIC TLKVLQHLV S+ MVG+ALVPYY+QILP LN++K++N
Sbjct: 158 NLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNGSYSLPRLECSGA 217
Query: 198 ---------------------------NTGDAIDYSQMKRENIGDLVQETLQILERHGGE 230
N+GD IDYSQ KRENIGDL+QETL+ ER+GGE
Sbjct: 218 IMARCNLDHLGSSDPPTSASQVAEIIVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGE 277
Query: 231 DACIYIKYMIPTYESCIL 248
+A I IKY++PTYESC+L
Sbjct: 278 NAFINIKYVVPTYESCLL 295
>sp|Q8N7B6|PACRL_HUMAN PACRG-like protein OS=Homo sapiens GN=PACRGL PE=1 SV=2
Length = 248
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 20/186 (10%)
Query: 62 SMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASK 121
S F YS+G P + SV +++ W+ ++L++ L +GLRET++PY F + +
Sbjct: 78 SAFAAIYSKGGIPCRLVHGSVKHRLQWECPPESLSFDPLLITLAEGLRETKHPYTFVSKE 137
Query: 122 GIHDLL--ENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALV 179
G +LL + +K +P+LP LI +K AL + EV L L L S +VG +L
Sbjct: 138 GFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLNALVQL---SVVVGPSLN 194
Query: 180 PYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYM 239
+ K +L L+ ++ + + + LQ LE+HGG + IK
Sbjct: 195 DHLKHLLTSLS---------------KRLMDKKFKEPITSALQKLEQHGGSGSLSIIKSK 239
Query: 240 IPTYES 245
IPTY S
Sbjct: 240 IPTYCS 245
>sp|Q9D3X5|PACRL_MOUSE PACRG-like protein OS=Mus musculus GN=Pacrgl PE=1 SV=1
Length = 248
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 62 SMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASK 121
+ F YS+G P + SV +++ W+ + L + L +GLRET++PY F + +
Sbjct: 78 TAFAAIYSQGGIPCRLVHGSVKHRLQWECPPEILPFDPLLITLAEGLRETKHPYTFVSKE 137
Query: 122 GIHDLL--ENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALV 179
G +LL + +K +P+LP LI +K AL + EV L L L S +VG
Sbjct: 138 GFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLSALVQL---SVVVG---- 190
Query: 180 PYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYM 239
P LN + L + ++ + + + LQ LE+HGG + I IK
Sbjct: 191 -------PSLNGHLKLLLTS----LSKRLMDKKFKEPITSALQKLEQHGGNASLIIIKSK 239
Query: 240 IPTYES 245
IPTY S
Sbjct: 240 IPTYCS 245
>sp|P57059|SIK1_HUMAN Serine/threonine-protein kinase SIK1 OS=Homo sapiens GN=SIK1 PE=1
SV=2
Length = 783
Score = 34.3 bits (77), Expect = 0.85, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 1 MVVIHRARLIVCHRARDLQYGR-RPSLPGPVVPAFSLQTHQKN 42
M+V+ AR I + R ++ R P LPGP PAFS ++ N
Sbjct: 258 MLVVDPARRITIAQIRQHRWMRAEPCLPGPACPAFSAHSYTSN 300
>sp|P27425|TRFE_HORSE Serotransferrin OS=Equus caballus GN=TF PE=2 SV=1
Length = 706
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 42 NTITGAPPKCVPK--DKTYDYTSMFRTYYSRGDFPI----AMEFKSVG-NKISWKEDIKT 94
+ +G +C P ++ Y YT FR +GD +E + G N W +D+K+
Sbjct: 524 GSASGPGRECEPNNHERYYGYTGAFRCLVEKGDVAFVKHQTVEQNTDGRNPDDWAKDLKS 583
Query: 95 LNYQYYLPIFFDGLRE--TEYPYKFFASKGIHDLLENGKDKIVPVLPHL 141
N++ P DG R+ TE+ + A H ++ K+K V L
Sbjct: 584 ENFKLLCP---DGTRKSVTEFKSCYLARAPNHAVVSR-KEKAACVCQEL 628
>sp|P42235|KDGD_BACSU Probable 5-dehydro-4-deoxyglucarate dehydratase OS=Bacillus
subtilis (strain 168) GN=ycbC PE=3 SV=2
Length = 308
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 81 SVGNKISWKEDI--KTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVL 138
++G+++ W + + YLPI F Y S+ +D L+NG D++V L
Sbjct: 178 TIGDRLGWLNGMPMAEVTMPAYLPIGFHSYSSAISNYIPHISRMFYDALKNGNDELVKEL 237
Query: 139 -PHLILPIKNALSTR 152
H+ILPI + R
Sbjct: 238 YRHVILPINDIRKQR 252
>sp|Q5R4B4|HDHD2_PONAB Haloacid dehalogenase-like hydrolase domain-containing protein 2
OS=Pongo abelii GN=HDHD2 PE=2 SV=1
Length = 259
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 2 VVIHRARLIVCHRARDLQYGRRPSL---PGPVVPAFSLQTHQKNTITGAPPK 50
+++ A LI H+AR Y R+ L PGP V A T K T+ G P K
Sbjct: 133 LLLDGAPLIAIHKAR--YYKRKDGLALGPGPFVTALEYATDTKATVVGKPEK 182
>sp|Q3ZCH9|HDHD2_BOVIN Haloacid dehalogenase-like hydrolase domain-containing protein 2
OS=Bos taurus GN=HDHD2 PE=2 SV=1
Length = 259
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 2 VVIHRARLIVCHRARDLQYGRRPSL---PGPVVPAFSLQTHQKNTITGAPPK 50
+++ A LI H+AR Y R+ L PGP V A T K T+ G P K
Sbjct: 133 LLLDGAPLIAIHKAR--YYKRKDGLALGPGPFVTALEYATDTKATVVGKPEK 182
>sp|Q9H0R4|HDHD2_HUMAN Haloacid dehalogenase-like hydrolase domain-containing protein 2
OS=Homo sapiens GN=HDHD2 PE=1 SV=1
Length = 259
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 2 VVIHRARLIVCHRARDLQYGRRPSL---PGPVVPAFSLQTHQKNTITGAPPK 50
+++ A LI H+AR Y R+ L PGP V A T K T+ G P K
Sbjct: 133 LLLDGAPLIAIHKAR--YYKRKDGLALGPGPFVTALEYATDTKATVVGKPEK 182
>sp|Q9NGP5|ABCG2_DICDI ABC transporter G family member 2 OS=Dictyostelium discoideum
GN=abcG2 PE=1 SV=2
Length = 1328
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 171 SSMVGEALVPYYKQILPHLNMYKDLNKNTG---DAIDYSQMKRENIGDLVQETLQIL--- 224
S M E + + + I+ LN+ K NK G + + SQ KR NIG + Q+L
Sbjct: 825 SDMPNEEKIKFVENIIETLNLLKIQNKQIGHGEEGLSLSQRKRVNIGVELASDPQLLFLD 884
Query: 225 ERHGGEDACIYIKYM 239
E G D+ +K M
Sbjct: 885 EPTSGLDSSAALKVM 899
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,422,553
Number of Sequences: 539616
Number of extensions: 4367386
Number of successful extensions: 10090
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 10079
Number of HSP's gapped (non-prelim): 18
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)