Query psy7090
Match_columns 253
No_of_seqs 122 out of 136
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 17:56:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 96.8 0.0029 9.8E-08 52.9 7.2 113 99-228 15-129 (242)
2 2qk1_A Protein STU2; STU2P, XM 96.8 0.0047 1.6E-07 53.4 8.6 120 100-233 105-227 (249)
3 2qk2_A LP04448P; mini spindles 96.1 0.026 8.8E-07 47.0 9.0 114 100-233 99-212 (242)
4 2bpt_A Importin beta-1 subunit 95.0 0.05 1.7E-06 52.0 7.4 123 100-229 640-766 (861)
5 1qgr_A Protein (importin beta 94.4 0.092 3.1E-06 50.2 7.7 124 100-234 409-545 (876)
6 4fdd_A Transportin-1; heat rep 94.4 0.038 1.3E-06 54.1 5.2 132 99-245 629-761 (852)
7 2qk1_A Protein STU2; STU2P, XM 94.0 0.17 5.8E-06 43.6 7.9 108 103-228 20-135 (249)
8 2bpt_A Importin beta-1 subunit 93.6 0.11 3.6E-06 49.7 6.3 121 96-231 590-716 (861)
9 1qgr_A Protein (importin beta 93.1 0.06 2E-06 51.5 3.7 88 100-190 650-740 (876)
10 1u6g_C TIP120 protein, CAND1; 93.0 0.095 3.3E-06 53.4 5.4 91 97-190 211-302 (1230)
11 1u6g_C TIP120 protein, CAND1; 93.0 0.28 9.4E-06 50.1 8.7 121 99-231 475-603 (1230)
12 4fdd_A Transportin-1; heat rep 92.9 0.032 1.1E-06 54.6 1.7 91 97-190 440-532 (852)
13 1ibr_B P95, importin beta-1 su 91.6 0.16 5.5E-06 44.4 4.3 88 99-189 366-456 (462)
14 2x19_B Importin-13; nuclear tr 87.7 0.81 2.8E-05 45.1 6.3 89 98-190 528-618 (963)
15 1ibr_B P95, importin beta-1 su 82.9 11 0.00036 32.8 10.5 126 100-231 218-362 (462)
16 1wa5_C Importin alpha RE-expor 80.4 3.6 0.00012 41.2 7.4 123 97-231 494-633 (960)
17 2x1g_F Cadmus; transport prote 80.2 1.2 4.2E-05 44.1 4.0 87 99-190 546-634 (971)
18 1b3u_A Protein (protein phosph 80.1 1.5 5E-05 39.7 4.1 48 138-190 517-564 (588)
19 4ffb_C Protein STU2; tubulin f 78.5 9.4 0.00032 32.3 8.5 85 100-189 103-188 (278)
20 1b3u_A Protein (protein phosph 73.8 3.7 0.00013 37.0 4.9 115 99-233 441-555 (588)
21 2of3_A ZYG-9; multifunctional 71.1 12 0.00042 33.3 7.6 111 99-236 132-246 (266)
22 1wa5_C Importin alpha RE-expor 67.8 4.7 0.00016 40.4 4.6 92 96-190 541-647 (960)
23 3m1i_C Exportin-1; heat repeat 67.7 4 0.00014 41.4 4.1 90 100-190 541-638 (1049)
24 1wa5_B Importin alpha subunit; 66.4 13 0.00044 34.0 6.9 87 99-185 383-477 (530)
25 2of3_A ZYG-9; multifunctional 62.7 9.9 0.00034 33.9 5.2 70 149-231 96-166 (266)
26 3ltj_A Alpharep-4; protein eng 58.7 61 0.0021 25.1 8.8 25 216-240 154-178 (201)
27 4ffb_C Protein STU2; tubulin f 54.8 29 0.001 29.2 6.7 76 94-171 6-86 (278)
28 1vdy_A Hypothetical protein (R 50.5 34 0.0012 27.9 6.1 81 141-226 50-130 (140)
29 2vgl_B AP-2 complex subunit be 48.5 35 0.0012 32.3 6.7 70 100-172 122-192 (591)
30 3gs3_A Symplekin, LD45768P; he 47.7 11 0.00038 33.3 3.0 64 100-163 50-113 (257)
31 3ltm_A Alpha-REP4; protein eng 45.3 1.1E+02 0.0036 23.9 9.5 29 139-167 80-108 (211)
32 2jdq_A Importin alpha-1 subuni 44.3 17 0.00058 31.6 3.6 73 99-171 64-138 (450)
33 2iw3_A Elongation factor 3A; a 43.5 22 0.00075 37.3 4.8 126 100-248 96-223 (986)
34 2jdq_A Importin alpha-1 subuni 41.2 54 0.0019 28.3 6.3 71 100-170 150-222 (450)
35 4b8j_A Importin subunit alpha- 37.9 31 0.0011 31.2 4.4 73 99-171 371-445 (528)
36 4hat_C Exportin-1; heat repeat 36.8 11 0.00037 39.2 1.2 130 98-228 584-739 (1023)
37 1wa5_B Importin alpha subunit; 36.3 64 0.0022 29.3 6.3 72 100-171 216-288 (530)
38 1w63_A Adapter-related protein 36.1 18 0.0006 34.7 2.6 89 99-187 179-281 (618)
39 1eyh_A Epsin; superhelix of he 35.5 1E+02 0.0035 24.9 6.7 81 138-225 39-121 (144)
40 2vgl_A Adaptor protein complex 34.7 46 0.0016 32.1 5.3 71 100-172 147-219 (621)
41 3ibv_A Exportin-T; karyopherin 33.9 57 0.0019 33.6 6.0 91 98-188 534-647 (980)
42 2x19_B Importin-13; nuclear tr 33.9 34 0.0012 33.6 4.2 65 124-188 798-868 (963)
43 3ltj_A Alpharep-4; protein eng 31.9 1.7E+02 0.0059 22.4 9.1 58 100-167 15-72 (201)
44 3ul1_B Importin subunit alpha- 31.8 34 0.0012 31.6 3.6 77 100-176 359-437 (510)
45 1xgw_A Epsin 4; ENTH, enthopro 31.7 1.1E+02 0.0038 25.7 6.6 78 138-225 68-151 (176)
46 4db8_A Armadillo-repeat protei 31.5 38 0.0013 27.1 3.5 76 95-170 8-84 (252)
47 4db8_A Armadillo-repeat protei 30.5 39 0.0013 27.0 3.4 72 100-171 139-211 (252)
48 4b8j_A Importin subunit alpha- 30.2 66 0.0022 29.1 5.2 71 100-170 203-274 (528)
49 3tpo_A Importin subunit alpha- 30.2 33 0.0011 31.7 3.3 77 100-176 378-456 (529)
50 4hat_C Exportin-1; heat repeat 28.7 28 0.00094 36.2 2.7 92 98-190 539-638 (1023)
51 4db6_A Armadillo repeat protei 28.7 36 0.0012 26.4 2.8 69 100-168 139-208 (210)
52 3ldz_A STAM-1, signal transduc 27.9 60 0.0021 25.7 4.1 32 140-171 42-73 (140)
53 3ltm_A Alpha-REP4; protein eng 27.2 2.2E+02 0.0074 22.0 10.4 60 98-167 18-77 (211)
54 4db6_A Armadillo repeat protei 26.7 46 0.0016 25.8 3.1 72 100-171 97-169 (210)
55 1inz_A EPS15-interacting porte 26.6 1.5E+02 0.0052 24.1 6.3 80 139-225 58-139 (148)
56 2vgl_B AP-2 complex subunit be 26.0 67 0.0023 30.3 4.6 35 137-171 118-152 (591)
57 2vgl_A Adaptor protein complex 25.1 19 0.00065 34.8 0.7 98 90-187 178-289 (621)
58 3onk_A Epsin-3, ENT3; helix, p 25.1 1.6E+02 0.0053 24.1 6.2 80 139-225 46-128 (150)
59 1xqr_A HSPBP1 protein; armadil 24.9 96 0.0033 27.2 5.2 118 100-231 168-289 (296)
60 3o2t_A Symplekin; heat repeat, 24.9 47 0.0016 31.2 3.3 64 100-163 60-123 (386)
61 3zyq_A Hepatocyte growth facto 24.8 68 0.0023 27.4 4.1 47 121-171 30-76 (226)
62 1x5b_A Signal transducing adap 24.3 74 0.0025 26.0 4.1 31 141-171 53-83 (163)
63 1mhq_A ADP-ribosylation factor 23.8 78 0.0027 25.4 4.1 31 141-171 39-69 (148)
64 4hxt_A De novo protein OR329; 22.6 66 0.0022 25.2 3.3 70 101-170 4-74 (252)
65 3g2s_A C-terminal fragment of 22.4 86 0.0029 25.4 4.1 31 141-171 49-79 (149)
66 2cr7_A Paired amphipathic heli 20.9 45 0.0015 24.5 1.9 46 180-241 29-74 (80)
67 1w63_A Adapter-related protein 20.8 63 0.0021 30.9 3.3 32 138-169 140-171 (618)
68 1juq_A ADP-ribosylation factor 20.1 1E+02 0.0034 25.4 4.1 45 122-171 36-81 (171)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.80 E-value=0.0029 Score=52.87 Aligned_cols=113 Identities=16% Similarity=0.214 Sum_probs=84.9
Q ss_pred cchhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhc-CCCHHHHHHHHHHHHHHHhcCCccccc
Q psy7090 99 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALS-TRNPEVICETLKVLQHLVTSSSMVGEA 177 (253)
Q Consensus 99 ~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~-trd~~V~~~~L~~Lq~Lv~~~~~VG~A 177 (253)
.+.|-|++++..++--+|.-|...+..+++..+.-.-.-+.+++..|+..|. ..|..|...++++|..|+. ..|+.
T Consensus 15 ~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~---~l~~~ 91 (242)
T 2qk2_A 15 KMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAK---GLAKR 91 (242)
T ss_dssp GSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH---HHGGG
T ss_pred cCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH---HHhhh
Confidence 3556799999988888999999999999987443233556788999999995 8999999999999999974 56889
Q ss_pred chhHHHhhchhhh-hhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhC
Q psy7090 178 LVPYYKQILPHLN-MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHG 228 (253)
Q Consensus 178 LvPyyRqlLP~ln-lfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~G 228 (253)
+-||..+++|.+- .++++ +..+++-..++|..+-...
T Consensus 92 ~~~~~~~ilp~ll~~l~d~--------------~~~vr~~a~~aL~~~~~~~ 129 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEK--------------KPNVVTALREAIDAIYAST 129 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCC--------------CHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHcCC--------------CHHHHHHHHHHHHHHHHcC
Confidence 9999999999854 22322 2345555556555554443
No 2
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.0047 Score=53.42 Aligned_cols=120 Identities=13% Similarity=0.159 Sum_probs=92.5
Q ss_pred chhhhhccccccccchHhHHHhhHHHHHHcCCCccccc--cccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccc
Q psy7090 100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPV--LPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEA 177 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPv--lPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~A 177 (253)
+||..+|-+.|.+..-+--|...+..+.+.-.. +.+. ++.++..|-.+|+++++.+-..+|..|..++..+...-..
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~ 183 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYST 183 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchh
Confidence 578888888888765555555555556665433 4444 8899999999999999999999999999998776544467
Q ss_pred chhHH-HhhchhhhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChhHH
Q psy7090 178 LVPYY-KQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDAC 233 (253)
Q Consensus 178 LvPyy-RqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~dA~ 233 (253)
+.+|+ .+|+|.+.-+-+ | ....+++.-.++|..+-+.-|++.+
T Consensus 184 l~~~l~~~iip~l~~~l~------D-------~~~~VR~aA~~~l~~i~~~vG~~~~ 227 (249)
T 2qk1_A 184 LQRYLKDEVVPIVIQIVN------D-------TQPAIRTIGFESFAILIKIFGMNTF 227 (249)
T ss_dssp HHHHHTTTHHHHHHHHHT------C-------SSHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred HHHHHHHHHHHHHHHHhc------C-------CCHHHHHHHHHHHHHHHHHhCHHHH
Confidence 99999 999999774332 1 2467899999999999999998754
No 3
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.13 E-value=0.026 Score=47.00 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=87.4
Q ss_pred chhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccccch
Q psy7090 100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALV 179 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~ALv 179 (253)
++|.+++.+.+++..-+--|...+..+.+..+ +.+++..|..+|.++|+.|-..++..|..++.... -.....
T Consensus 99 ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~-~~~~~~ 171 (242)
T 2qk2_A 99 CVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQ-PTALNK 171 (242)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC-GGGCCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC-CCCccH
Confidence 67888888888887777777888888776432 46788889999999999999999999988764431 012457
Q ss_pred hHHHhhchhhhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChhHH
Q psy7090 180 PYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDAC 233 (253)
Q Consensus 180 PyyRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~dA~ 233 (253)
+|+.+++|.+--.-+ | ....+++...++|..|-+.=|++.+
T Consensus 172 ~~l~~l~p~l~~~l~------D-------~~~~VR~~A~~~l~~l~~~vg~~~~ 212 (242)
T 2qk2_A 172 KLLKLLTTSLVKTLN------E-------PDPTVRDSSAEALGTLIKLMGDKAV 212 (242)
T ss_dssp HHHHHHHHHHHHHHT------S-------SCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHhc------C-------CChHHHHHHHHHHHHHHHHcCHHHH
Confidence 899999998664331 1 2467889999999999999898764
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=94.99 E-value=0.05 Score=51.98 Aligned_cols=123 Identities=16% Similarity=0.273 Sum_probs=85.0
Q ss_pred chhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCC--HHHHHHHHHHHHHHHhcCCccccc
Q psy7090 100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRN--PEVICETLKVLQHLVTSSSMVGEA 177 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd--~~V~~~~L~~Lq~Lv~~~~~VG~A 177 (253)
++|.++++|...+..-+.-|...+.++.+..++.+.|.++.++..+-..|.+.+ +++-..++.+|..++.. .|+.
T Consensus 640 i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~---~~~~ 716 (861)
T 2bpt_A 640 FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN---IGAD 716 (861)
T ss_dssp HHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH---HGGG
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH---hhhh
Confidence 455666777544455566677777888888788999999999999999998865 88999999999888654 5899
Q ss_pred chhHHHhhchhhhhhhcccCCCCc--ccccchhcccchhHHHHHHHHHHHHhCC
Q psy7090 178 LVPYYKQILPHLNMYKDLNKNTGD--AIDYSQMKRENIGDLVQETLQILERHGG 229 (253)
Q Consensus 178 LvPyyRqlLP~lnlfk~~n~n~gD--~idy~q~~~~~lgdlI~eTL~~LE~~GG 229 (253)
+.||+-+++|.+--..+.....+| ..||. .+++.-+.+++..+-+..|
T Consensus 717 ~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~----~~vr~~~l~~~~~i~~~l~ 766 (861)
T 2bpt_A 717 FIPYLNDIMALCVAAQNTKPENGTLEALDYQ----IKVLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp GHHHHHHHHHHHHHHHTCCCSSSSHHHHHHH----HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCChHHHHHH----HHHHHHHHHHHHHHHHHHc
Confidence 999999999986543322111111 11221 2345555566665555444
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=94.40 E-value=0.092 Score=50.24 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=84.6
Q ss_pred chhhhhccccccccchHhHHHhhHHHHHHcCCCc--cccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCC-----
Q psy7090 100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDK--IVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSS----- 172 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~K--ilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~----- 172 (253)
.+|.++.+|.+.....+.-|-..+..+.+..+.. .-|.+++++..|-.+|+. ++.|-..++.+|..++....
T Consensus 409 ~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~ 487 (876)
T 1qgr_A 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADV 487 (876)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhcccc
Confidence 5777888887655555666777777777654433 347888999999999987 48888888999988876532
Q ss_pred ------cccccchhHHHhhchhhhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChhHHH
Q psy7090 173 ------MVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACI 234 (253)
Q Consensus 173 ------~VG~ALvPyyRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~dA~i 234 (253)
..++.+.||+.+++|.|--..+... . ...+++..+.|+|..+-+..|.+...
T Consensus 488 ~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~--~--------~~~~~r~~~~~~l~~l~~~~~~~~~~ 545 (876)
T 1qgr_A 488 ADDQEEPATYCLSSSFELIVQKLLETTDRPD--G--------HQNNLRSSAYESLMEIVKNSAKDCYP 545 (876)
T ss_dssp TTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS--S--------CSTTHHHHHHHHHHHHHHTCCSTTHH
T ss_pred ccccccccchhhhHhHHHHHHHHHHHHhCcC--c--------chhhHHHHHHHHHHHHHHHCchhhHH
Confidence 2346799999999998754332210 0 12355566677777777777665443
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=94.39 E-value=0.038 Score=54.07 Aligned_cols=132 Identities=11% Similarity=0.153 Sum_probs=91.1
Q ss_pred cchhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccccc
Q psy7090 99 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEAL 178 (253)
Q Consensus 99 ~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~AL 178 (253)
.+++++++.+......-+--|..-+.++....++.+.|.++++++.+-++|+..++++-..+..++-.++. .+|+.+
T Consensus 629 ~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~---~~~~~~ 705 (852)
T 4fdd_A 629 NILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISI---QMGIEM 705 (852)
T ss_dssp CHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHH---HHGGGG
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHH---HhhHhH
Confidence 56777777775544334445555566666677889999999999999999999999999989888888864 458899
Q ss_pred hhHHHhhchhhh-hhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChhHHHHhhhcCCcccc
Q psy7090 179 VPYYKQILPHLN-MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYES 245 (253)
Q Consensus 179 vPyyRqlLP~ln-lfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~dA~inIKymIPTYeS 245 (253)
-||+.++++.|- ++++.+ -.+++.|-.-.|+..|-+.++...-..+-..+|++..
T Consensus 706 ~p~~~~il~~L~~~l~~~~------------~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~ 761 (852)
T 4fdd_A 706 QPYIPMVLHQLVEIINRPN------------TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCT 761 (852)
T ss_dssp GGGTHHHHHHHHHHHTCSS------------CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCC------------CCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHH
Confidence 999999999854 332211 1245666677777777777443222234444444443
No 7
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=94.02 E-value=0.17 Score=43.58 Aligned_cols=108 Identities=10% Similarity=0.172 Sum_probs=73.5
Q ss_pred hhhccccccccchHhHHHhhHHH-HHHcCCCcccc---ccccchHHHHHhh-cCCCHHHHHHHHHHHHHHHhcCCccc-c
Q psy7090 103 IFFDGLRETEYPYKFFASKGIHD-LLENGKDKIVP---VLPHLILPIKNAL-STRNPEVICETLKVLQHLVTSSSMVG-E 176 (253)
Q Consensus 103 iFfdGLrEt~~PY~FlA~~G~~d-LL~~~~~KilP---vlPqLI~PiK~AL-~trd~~V~~~~L~~Lq~Lv~~~~~VG-~ 176 (253)
-|.+.+..++=--|-=|.+.+.. +++ +..++.+ =...++.-|+..| +-.|..|...++++|.+|+ ...+ +
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~-~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la---~~l~~~ 95 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLS-QTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELIC---DKLKTP 95 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGG-GCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH---HHHCTT
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHh-cCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH---Hhcccc
Confidence 46666655444444334444444 443 2345553 2358899999999 7889999999999999996 5567 8
Q ss_pred cch-hHHHhhchh-hhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhC
Q psy7090 177 ALV-PYYKQILPH-LNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHG 228 (253)
Q Consensus 177 ALv-PyyRqlLP~-lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~G 228 (253)
..- ||...+||. +..++++ ..++.+-+.++|..+-.+-
T Consensus 96 ~f~~~y~~~llp~ll~~l~dk--------------k~~V~~aa~~al~~i~~~~ 135 (249)
T 2qk1_A 96 GFSKDYVSLVFTPLLDRTKEK--------------KPSVIEAIRKALLTICKYY 135 (249)
T ss_dssp TSCHHHHHHHHHHHHHGGGCC--------------CHHHHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHHcCC--------------CHHHHHHHHHHHHHHHHHc
Confidence 898 999999987 4455543 3456677777777666655
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=93.56 E-value=0.11 Score=49.69 Aligned_cols=121 Identities=13% Similarity=0.102 Sum_probs=80.1
Q ss_pred CCCcchhhhhcc----cccccc-chHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q psy7090 96 NYQYYLPIFFDG----LRETEY-PYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS 170 (253)
Q Consensus 96 Dy~~yLPiFfdG----LrEt~~-PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~ 170 (253)
++.+|++.+++. +..... ..+--+...+.-+....++.+.|.+|+++..|...|++.++++-..++.++..++.
T Consensus 590 ~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~- 668 (861)
T 2bpt_A 590 SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISN- 668 (861)
T ss_dssp GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-
Confidence 445555554443 433322 23333444555566666778899999999999999999999999999999988875
Q ss_pred CCcccccchhHHHhhchhhh-hhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChh
Q psy7090 171 SSMVGEALVPYYKQILPHLN-MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGED 231 (253)
Q Consensus 171 ~~~VG~ALvPyyRqlLP~ln-lfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~d 231 (253)
.+|+.+.||..+++|.+- .+.+.+ . +..++..+..+|..+-++.|++
T Consensus 669 --~~~~~~~~~~~~l~~~l~~~l~~~~------~------~~~vr~~~~~~l~~l~~~~~~~ 716 (861)
T 2bpt_A 669 --SLEEDFRRYSDAMMNVLAQMISNPN------A------RRELKPAVLSVFGDIASNIGAD 716 (861)
T ss_dssp --HTGGGGHHHHHHHHHHHHHHHHCTT------C------CTTHHHHHHHHHHHHHHHHGGG
T ss_pred --HhchhccchHHHHHHHHHHHhCCcc------c------cHhhhHHHHHHHHHHHHHhhhh
Confidence 458899999999999853 222110 1 1234555555565555555554
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=93.06 E-value=0.06 Score=51.53 Aligned_cols=88 Identities=20% Similarity=0.309 Sum_probs=69.2
Q ss_pred chhhhhcccccc-ccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcC--CCHHHHHHHHHHHHHHHhcCCcccc
Q psy7090 100 YLPIFFDGLRET-EYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALST--RNPEVICETLKVLQHLVTSSSMVGE 176 (253)
Q Consensus 100 yLPiFfdGLrEt-~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~t--rd~~V~~~~L~~Lq~Lv~~~~~VG~ 176 (253)
++|.+..+|... ...-+.-|...+.++....++.+.|.+++++..|-..|++ .+.++...++.++..++. ..|+
T Consensus 650 ~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~---~~g~ 726 (876)
T 1qgr_A 650 FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL---AIGG 726 (876)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH---HHGG
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH---Hhch
Confidence 456666777765 3344566777778888777788999999999999999987 467888888888888754 4588
Q ss_pred cchhHHHhhchhhh
Q psy7090 177 ALVPYYKQILPHLN 190 (253)
Q Consensus 177 ALvPyyRqlLP~ln 190 (253)
.+.||+.+++|.+.
T Consensus 727 ~~~~~l~~~~~~l~ 740 (876)
T 1qgr_A 727 EFKKYLEVVLNTLQ 740 (876)
T ss_dssp GGGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 89999999999865
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=93.04 E-value=0.095 Score=53.43 Aligned_cols=91 Identities=10% Similarity=0.093 Sum_probs=78.0
Q ss_pred CCcchhhhhcccccccc-chHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccc
Q psy7090 97 YQYYLPIFFDGLRETEY-PYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVG 175 (253)
Q Consensus 97 y~~yLPiFfdGLrEt~~-PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG 175 (253)
|++++|.+.++|..... ..+--|.+++-.+....+.++.|.+++++..+..+++..+++|=..+++.+..++. ..|
T Consensus 211 ~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~---~~~ 287 (1230)
T 1u6g_C 211 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR---RCP 287 (1230)
T ss_dssp CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH---CTT
T ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH---HCh
Confidence 77889999999977643 45566788888888887889999999999999999999999998899999988875 468
Q ss_pred ccchhHHHhhchhhh
Q psy7090 176 EALVPYYKQILPHLN 190 (253)
Q Consensus 176 ~ALvPyyRqlLP~ln 190 (253)
+.+.||..+++|.+-
T Consensus 288 ~~~~~~l~~li~~ll 302 (1230)
T 1u6g_C 288 KEVYPHVSTIINICL 302 (1230)
T ss_dssp CCCHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHH
Confidence 899999999999864
No 11
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=92.99 E-value=0.28 Score=50.07 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=81.7
Q ss_pred cchhhhhcccccccc--chHhHHHhhHHHHHHc-CCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc-CC--
Q psy7090 99 YYLPIFFDGLRETEY--PYKFFASKGIHDLLEN-GKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS-SS-- 172 (253)
Q Consensus 99 ~yLPiFfdGLrEt~~--PY~FlA~~G~~dLL~~-~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~-~~-- 172 (253)
.++|.+.+.|.+... --+.=|-..+..+++. +++.+.|.+++++..|-.+++.+++.|-..++.++..++.. ++
T Consensus 475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~ 554 (1230)
T 1u6g_C 475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLD 554 (1230)
T ss_dssp HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcc
Confidence 456666777765543 1222233344445553 55668899999999999999999999988888888888743 22
Q ss_pred -cccccchhHHHhhchhhh-hhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChh
Q psy7090 173 -MVGEALVPYYKQILPHLN-MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGED 231 (253)
Q Consensus 173 -~VG~ALvPyyRqlLP~ln-lfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~d 231 (253)
..+..+.||+.+|+|.+- .+.+. | ....+++...++|..|-.++|++
T Consensus 555 ~~~~~~~~~~~~~ll~~ll~~l~~~-----d-------~~~~vr~~a~~~lg~L~~~~g~~ 603 (1230)
T 1u6g_C 555 QPSSFDATPYIKDLFTCTIKRLKAA-----D-------IDQEVKERAISCMGQIICNLGDN 603 (1230)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHSCS-----S-------SCHHHHHHHHHHHHHHHHHTGGG
T ss_pred cccccchHHHHHHHHHHHHHHHhcc-----C-------CCHHHHHHHHHHHHHHHHHhCch
Confidence 234589999999999853 33211 1 12356666778888888888865
No 12
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=92.92 E-value=0.032 Score=54.63 Aligned_cols=91 Identities=16% Similarity=0.219 Sum_probs=75.3
Q ss_pred CCcchhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccc
Q psy7090 97 YQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGE 176 (253)
Q Consensus 97 y~~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~ 176 (253)
++..+|.++++|.+....-+--|-..+..+.+..+..+.|.+|+++..|..+|+..+.+....+++++..++ +.+|+
T Consensus 440 ~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~---~~~~~ 516 (852)
T 4fdd_A 440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLA---DSVGH 516 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---HHHGG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH---HHhhh
Confidence 345778888888887777777788888888888778899999999999999999998888888888888886 44677
Q ss_pred cch--hHHHhhchhhh
Q psy7090 177 ALV--PYYKQILPHLN 190 (253)
Q Consensus 177 ALv--PyyRqlLP~ln 190 (253)
.+. +||.+++|.+.
T Consensus 517 ~~~~~~~~~~l~p~l~ 532 (852)
T 4fdd_A 517 HLNKPEYIQMLMPPLI 532 (852)
T ss_dssp GGCCHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHH
Confidence 774 59999999864
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=91.57 E-value=0.16 Score=44.45 Aligned_cols=88 Identities=15% Similarity=0.232 Sum_probs=63.8
Q ss_pred cchhhhhccccccccchHhHHHhhHHHHHHcCC-CccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccc
Q psy7090 99 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGK-DKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEA 177 (253)
Q Consensus 99 ~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~-~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~A 177 (253)
..+|.+.+.|.+.+--.+.-|...+-.+.+... +.+-+.+++++..|-.+|+..++.|-.++..+|..++ +..|+.
T Consensus 366 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~---~~~~~~ 442 (462)
T 1ibr_B 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC---ELLPEA 442 (462)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH---HHGGGG
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH---Hhcccc
Confidence 355666667766554455555555555555333 4567889999999999999999999999999999886 445666
Q ss_pred c--hhHHHhhchhh
Q psy7090 178 L--VPYYKQILPHL 189 (253)
Q Consensus 178 L--vPyyRqlLP~l 189 (253)
+ -+|+.+++|.|
T Consensus 443 ~~~~~~l~~ll~~L 456 (462)
T 1ibr_B 443 AINDVYLAPLLQCL 456 (462)
T ss_dssp CCSTTTHHHHHHHH
T ss_pred cccHHHHHHHHHHH
Confidence 5 37888888864
No 14
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=87.66 E-value=0.81 Score=45.12 Aligned_cols=89 Identities=10% Similarity=0.173 Sum_probs=70.4
Q ss_pred CcchhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCC--CHHHHHHHHHHHHHHHhcCCccc
Q psy7090 98 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTR--NPEVICETLKVLQHLVTSSSMVG 175 (253)
Q Consensus 98 ~~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~tr--d~~V~~~~L~~Lq~Lv~~~~~VG 175 (253)
...|+.+++||.+ ..-+--|-..+..+.+..++.+.|.+++++.-+..+++.. +.+.....++++..++...+ .
T Consensus 528 ~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~--~ 603 (963)
T 2x19_B 528 NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ--V 603 (963)
T ss_dssp TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC--H
T ss_pred HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC--H
Confidence 4577888888866 4555666677788888888889999999999999999863 56788888888888875433 4
Q ss_pred ccchhHHHhhchhhh
Q psy7090 176 EALVPYYKQILPHLN 190 (253)
Q Consensus 176 ~ALvPyyRqlLP~ln 190 (253)
+...||+.++++++.
T Consensus 604 ~~~~~~~~~l~~~l~ 618 (963)
T 2x19_B 604 EEILKNLHSLISPYI 618 (963)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 788999999998865
No 15
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=82.87 E-value=11 Score=32.79 Aligned_cols=126 Identities=10% Similarity=0.073 Sum_probs=77.4
Q ss_pred chhhhhccccccccchHhHHHhhHHHHHHcCCCccccccc-cchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC-------
Q psy7090 100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLP-HLILPIKNALSTRNPEVICETLKVLQHLVTSS------- 171 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlP-qLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~------- 171 (253)
.++.+.+.+...+...+--|.+.+.++.+..++.+-|.++ .++..+-..+...+++|...+++.+..++...
T Consensus 218 l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~ 297 (462)
T 1ibr_B 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA 297 (462)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3666666554444444455666777777777788889999 89888888999999999999999888886542
Q ss_pred -----------CcccccchhHHHhhchhhhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChh
Q psy7090 172 -----------SMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGED 231 (253)
Q Consensus 172 -----------~~VG~ALvPyyRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~d 231 (253)
.....-.-+|..+++|.+- +..... .+.. .. ...+++....++|..|-..-|++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~--~~l~~~-d~d~-~~--~~~~~r~~a~~~L~~l~~~~~~~ 362 (462)
T 1ibr_B 298 SEAAEQGRPPEHTSKFYAKGALQYLVPILT--QTLTKQ-DEND-DD--DDWNPCKAAGVCLMLLATCCEDD 362 (462)
T ss_dssp CCTTCSSSCSSCCCCCHHHHHHHHHHHHHH--HHTTCC-CSSC-CT--TCCSHHHHHHHHHHHHHHHTTTT
T ss_pred ccccccCCCccchhHHHHHHHhhhccHHHH--HHHHhc-cccc-cc--ccchHHHHHHHHHHHHHHhccHH
Confidence 1112223357788888752 211110 0000 00 12245555666666666555543
No 16
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=80.36 E-value=3.6 Score=41.17 Aligned_cols=123 Identities=14% Similarity=0.175 Sum_probs=79.1
Q ss_pred CCcchhhhhccccccccchHhHHHhhHHHHHHc-----------CCCccccccccchHHHHHhhcCCC---HH--HHHHH
Q psy7090 97 YQYYLPIFFDGLRETEYPYKFFASKGIHDLLEN-----------GKDKIVPVLPHLILPIKNALSTRN---PE--VICET 160 (253)
Q Consensus 97 y~~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~-----------~~~KilPvlPqLI~PiK~AL~trd---~~--V~~~~ 160 (253)
+...|+.++.+|.....+-+.-|-..+..+++. ..+-+.|.+++|+.-|-.+|+... +. ....+
T Consensus 494 l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l 573 (960)
T 1wa5_C 494 LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFL 573 (960)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHH
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHH
Confidence 455788888999876666667777778877763 235688999999999999998751 11 22345
Q ss_pred HHHHHHHHhcCCcccccchhHHHhhchhhhhhhccc-CCCCcccccchhcccchhHHHHHHHHHHHHhCChh
Q psy7090 161 LKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN-KNTGDAIDYSQMKRENIGDLVQETLQILERHGGED 231 (253)
Q Consensus 161 L~~Lq~Lv~~~~~VG~ALvPyyRqlLP~lnlfk~~n-~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~d 231 (253)
+++|..++.. .++++.||+-.+++.|--.-+.- .|-. +..+...+-|+|..+-+..|++
T Consensus 574 ~~al~~vv~~---~~~~~~p~~~~l~~~L~~~l~~~~~~~~---------~~~~~~~~~e~l~~l~~~~~~~ 633 (960)
T 1wa5_C 574 MRSIFRVLQT---SEDSIQPLFPQLLAQFIEIVTIMAKNPS---------NPRFTHYTFESIGAILNYTQRQ 633 (960)
T ss_dssp HHHHHHHHHH---HTTTTGGGHHHHHHHHHHHHHHHTTSCC---------CHHHHHHHHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHhCCC---------CcHHHHHHHHHHHHHHhcCCcc
Confidence 6666666543 37899999999998765322221 1111 1223334566666666665654
No 17
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=80.19 E-value=1.2 Score=44.14 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=69.8
Q ss_pred cchhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcC--CCHHHHHHHHHHHHHHHhcCCcccc
Q psy7090 99 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALST--RNPEVICETLKVLQHLVTSSSMVGE 176 (253)
Q Consensus 99 ~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~t--rd~~V~~~~L~~Lq~Lv~~~~~VG~ 176 (253)
..||.++.|| . .+..--|-..+.++.+..++.+.|.+++|+.-+-.+++. -+.+.....++++-.++...+ ++
T Consensus 546 ~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~--~~ 620 (971)
T 2x1g_F 546 PAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR--PE 620 (971)
T ss_dssp HHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC--TT
T ss_pred HHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC--HH
Confidence 3667777888 2 556777778888898888889999999999999999998 357888888888888876543 58
Q ss_pred cchhHHHhhchhhh
Q psy7090 177 ALVPYYKQILPHLN 190 (253)
Q Consensus 177 ALvPyyRqlLP~ln 190 (253)
...||+.++++++.
T Consensus 621 ~~~~~~~~ll~~l~ 634 (971)
T 2x1g_F 621 EIPKYLDIIVSPCF 634 (971)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88999999877754
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=80.11 E-value=1.5 Score=39.66 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=27.0
Q ss_pred cccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccccchhHHHhhchhhh
Q psy7090 138 LPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLN 190 (253)
Q Consensus 138 lPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~ALvPyyRqlLP~ln 190 (253)
+++++..|.+.|+..+++|-..++++|..++ ..+|+...+ .+++|.+.
T Consensus 517 ~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~---~~~~~~~~~--~~~~p~l~ 564 (588)
T 1b3u_A 517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIG---PILDNSTLQ--SEVKPILE 564 (588)
T ss_dssp HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHG---GGSCHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHHHH---HHhchhhhH--HHHHHHHH
Confidence 3556666666677666777666666666664 233443322 34555544
No 19
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=78.55 E-value=9.4 Score=32.32 Aligned_cols=85 Identities=13% Similarity=0.258 Sum_probs=48.1
Q ss_pred chhhhhc-cccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccccc
Q psy7090 100 YLPIFFD-GLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEAL 178 (253)
Q Consensus 100 yLPiFfd-GLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~AL 178 (253)
++|.++| +|-+++..-+--|.+.+.++.+... ....++.-|-.+|+++||.+...++..|..++..-..-.-..
T Consensus 103 ~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~ 177 (278)
T 4ffb_C 103 WTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNV 177 (278)
T ss_dssp HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCH
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCc
Confidence 3444444 2444444444444555555554322 123345566789999999999999999999886532211122
Q ss_pred hhHHHhhchhh
Q psy7090 179 VPYYKQILPHL 189 (253)
Q Consensus 179 vPyyRqlLP~l 189 (253)
-+....+++.+
T Consensus 178 k~~l~~i~~~l 188 (278)
T 4ffb_C 178 QTFLPELLKHV 188 (278)
T ss_dssp HHHHHHHGGGH
T ss_pred hhHHHHHHHHH
Confidence 33455555543
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=73.78 E-value=3.7 Score=37.02 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=77.0
Q ss_pred cchhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccccc
Q psy7090 99 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEAL 178 (253)
Q Consensus 99 ~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~AL 178 (253)
.++|.++..|.+....-+--|.+.+..++..-+... .++.++..|...++..+..+-..++.++..|+. .+|+.
T Consensus 441 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~---~~~~~- 514 (588)
T 1b3u_A 441 KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE---VCGQD- 514 (588)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH---HHHHH-
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH---hcCHH-
Confidence 578888888887776677778888888876533321 246666677777888888888888888887753 34543
Q ss_pred hhHHHhhchhhhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChhHH
Q psy7090 179 VPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDAC 233 (253)
Q Consensus 179 vPyyRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~dA~ 233 (253)
.|..+++|.+--.- .| ...+++.-+..+|..+-.+-|++.+
T Consensus 515 -~~~~~~~~~l~~~l------~d-------~~~~Vr~~a~~~l~~l~~~~~~~~~ 555 (588)
T 1b3u_A 515 -ITTKHMLPTVLRMA------GD-------PVANVRFNVAKSLQKIGPILDNSTL 555 (588)
T ss_dssp -HHHHHTHHHHHHGG------GC-------SCHHHHHHHHHHHHHHGGGSCHHHH
T ss_pred -HHHHHHHHHHHhhC------CC-------CCchHHHHHHHHHHHHHHHhchhhh
Confidence 37778888754221 12 1245666677777777766676543
No 21
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=71.12 E-value=12 Score=33.34 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=76.9
Q ss_pred cchhhhhccccccccchHhHHHhhHHHHHHc-CCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccc
Q psy7090 99 YYLPIFFDGLRETEYPYKFFASKGIHDLLEN-GKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEA 177 (253)
Q Consensus 99 ~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~-~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~A 177 (253)
.+||.++|=+-+.++++|=-+++-++.|.+- +..++. .-+..++.++|..+-..+|..|-.|+....+-.
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~-------~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~-- 202 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMT-------PMLLDALKSKNARQRSECLLVIEYYITNAGISP-- 202 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHH-------HHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHH-------HHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--
Confidence 4789999999999999977777766666542 333444 446779999999999999999999987764431
Q ss_pred chhHHHhhc---hhhhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChhHHHHh
Q psy7090 178 LVPYYKQIL---PHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYI 236 (253)
Q Consensus 178 LvPyyRqlL---P~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~dA~inI 236 (253)
.+.| |.+-- .++| ++.++++.--.|+..+=++.|+.-+.-+
T Consensus 203 -----~~~l~~~~~ia~------ll~D-------~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 203 -----LKSLSVEKTVAP------FVGD-------KDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp -----GGGGCHHHHHGG------GGGC-------SSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred -----cccccchHHHHH------HHcC-------CCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2333 33221 1222 3467788777787777788898866554
No 22
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=67.76 E-value=4.7 Score=40.36 Aligned_cols=92 Identities=16% Similarity=0.290 Sum_probs=64.6
Q ss_pred CCCcchhhhhccccccccc---------hHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcC-----CCHHHHHHHH
Q psy7090 96 NYQYYLPIFFDGLRETEYP---------YKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALST-----RNPEVICETL 161 (253)
Q Consensus 96 Dy~~yLPiFfdGLrEt~~P---------Y~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~t-----rd~~V~~~~L 161 (253)
++.+|++..++.|...-+- -.-.+..++..+++..++.+.|.++.|+..|...|+. .|+.....++
T Consensus 541 ~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~ 620 (960)
T 1wa5_C 541 DISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTF 620 (960)
T ss_dssp GTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 4568888776655422110 1234677778888888899999999999888877754 4667777789
Q ss_pred HHHHHHHhcCCccc-ccchhHHHhhchhhh
Q psy7090 162 KVLQHLVTSSSMVG-EALVPYYKQILPHLN 190 (253)
Q Consensus 162 ~~Lq~Lv~~~~~VG-~ALvPyyRqlLP~ln 190 (253)
+.|..+++. +| +...++..+++|++.
T Consensus 621 e~l~~l~~~---~~~~~~~~~~~~~~p~~~ 647 (960)
T 1wa5_C 621 ESIGAILNY---TQRQNLPLLVDSMMPTFL 647 (960)
T ss_dssp HHHHHHHHT---SCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCcchHHHHHHHHHHHHH
Confidence 999888876 45 355667777888765
No 23
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=67.69 E-value=4 Score=41.38 Aligned_cols=90 Identities=13% Similarity=0.178 Sum_probs=68.4
Q ss_pred chhhhhccccccccchHhHHHhhHHHHHHcCCCccc--------cccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7090 100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIV--------PVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSS 171 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~Kil--------PvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~ 171 (253)
.|+.+++||.+...+-+--|-..+.-+.+..+..++ |.+++++.-+-.+++.-+.+-....++++..++...
T Consensus 541 vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 541 VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 556677788877667777777777777776665555 999999999999998877777778888888887554
Q ss_pred CcccccchhHHHhhchhhh
Q psy7090 172 SMVGEALVPYYKQILPHLN 190 (253)
Q Consensus 172 ~~VG~ALvPyyRqlLP~ln 190 (253)
+ --+...+|+.+|++.++
T Consensus 621 ~-~~~~~~~~~~~l~~~~~ 638 (1049)
T 3m1i_C 621 R-SVAERNRLLSDLMQLPN 638 (1049)
T ss_dssp C-SHHHHHHHHHHHTHHHH
T ss_pred C-CHHHHHHHHHHHHHHHH
Confidence 3 11568899999998864
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=66.44 E-value=13 Score=33.97 Aligned_cols=87 Identities=22% Similarity=0.235 Sum_probs=60.9
Q ss_pred cchhhhhccccccccchHhHHHhhHHHHHHcCCC--cccccc--ccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcc
Q psy7090 99 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKD--KIVPVL--PHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMV 174 (253)
Q Consensus 99 ~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~--KilPvl--PqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~V 174 (253)
..+|.+++-|...+...+.-|...+..|...+.. .....+ ..+|.+|-..|...|++|...++.+|..|+..++.-
T Consensus 383 ~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~ 462 (530)
T 1wa5_B 383 NLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEAD 462 (530)
T ss_dssp TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 4678888888776666677777788888776543 222222 247888889999999999999999999998765432
Q ss_pred ----cccchhHHHhh
Q psy7090 175 ----GEALVPYYKQI 185 (253)
Q Consensus 175 ----G~ALvPyyRql 185 (253)
|..+.+|...|
T Consensus 463 ~~~~~~~~~~~~~~l 477 (530)
T 1wa5_B 463 KEARGLNINENADFI 477 (530)
T ss_dssp HHHHTCSSCHHHHHH
T ss_pred hhcccccccHHHHHH
Confidence 22445655443
No 25
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=62.73 E-value=9.9 Score=33.94 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=49.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcCCcccccchhH-HHhhchhhhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHh
Q psy7090 149 LSTRNPEVICETLKVLQHLVTSSSMVGEALVPY-YKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERH 227 (253)
Q Consensus 149 L~trd~~V~~~~L~~Lq~Lv~~~~~VG~ALvPy-yRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~ 227 (253)
+...|..|...+|++|++|+..-.-.|..+.+| --.+||.|-. | +||.. +++++.+.+.|..++.-
T Consensus 96 ~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~Lve-K-----lGd~k-------~~vR~~~r~il~~l~~v 162 (266)
T 2of3_A 96 FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLL-K-----TGEAK-------DNMRTSVRDIVNVLSDV 162 (266)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-G-----GGCSS-------HHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH-H-----hCCCh-------HHHHHHHHHHHHHHHHH
Confidence 346799999999999999976544456677777 3677777642 2 46633 46777788888777776
Q ss_pred CChh
Q psy7090 228 GGED 231 (253)
Q Consensus 228 GG~d 231 (253)
..+.
T Consensus 163 ~~~~ 166 (266)
T 2of3_A 163 VGPL 166 (266)
T ss_dssp HCHH
T ss_pred CCHH
Confidence 5554
No 26
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=58.72 E-value=61 Score=25.09 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhCChhHHHHhhhcC
Q psy7090 216 LVQETLQILERHGGEDACIYIKYMI 240 (253)
Q Consensus 216 lI~eTL~~LE~~GG~dA~inIKymI 240 (253)
+-..+++.|.+.|++++...+..++
T Consensus 154 vr~~A~~aL~~~~~~~~~~~L~~~l 178 (201)
T 3ltj_A 154 VRQSAADALGEIGGERVRAAMEKLA 178 (201)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3455666666777777766665543
No 27
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=54.82 E-value=29 Score=29.21 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=48.6
Q ss_pred CCCCCcchhhhhccccccccchHhHHHhhHHHHHHcCC-----CccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy7090 94 TLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGK-----DKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLV 168 (253)
Q Consensus 94 ~LDy~~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~-----~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv 168 (253)
+-||.- || |-|.|..+.==.|-=|.+-+..+++... +-.++.+-.++.-+|.++.-.|..|...+|++|+.++
T Consensus 6 ~~d~sk-lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~ 83 (278)
T 4ffb_C 6 EVDYTT-LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLI 83 (278)
T ss_dssp -----C-CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred hhhhhc-CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 344442 55 4566666655555555555555565432 3455567788889999999999999999999999998
Q ss_pred hcC
Q psy7090 169 TSS 171 (253)
Q Consensus 169 ~~~ 171 (253)
...
T Consensus 84 ~~~ 86 (278)
T 4ffb_C 84 DAF 86 (278)
T ss_dssp TTC
T ss_pred HHh
Confidence 643
No 28
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=50.50 E-value=34 Score=27.89 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=51.3
Q ss_pred chHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccccchhHHHhhchhhhhhhcccCCCCcccccchhcccchhHHHHHH
Q psy7090 141 LILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQET 220 (253)
Q Consensus 141 LI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~ALvPyyRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eT 220 (253)
+.-=|=+-|+.+++.++..+|++|..|+.-+ .+..+-..|+=...+...++-.. -|.=.+|.....++++--+|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~G---s~~f~~~~r~~~~~Ik~l~~F~g--~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKS---GSEFRREMQRNSVAVRNLFHYKG--HPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTS---CHHHHHHHHHTTHHHHTTTTCCC--CCCTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhC---CHHHHHHHHHhHHHHHHHHhcCC--CCCcccccchhHHHHHHHHHH
Confidence 3444557788899999999999999998654 56666666655544333222110 011113444557888888888
Q ss_pred HHHHHH
Q psy7090 221 LQILER 226 (253)
Q Consensus 221 L~~LE~ 226 (253)
+++|-.
T Consensus 125 ~~ll~d 130 (140)
T 1vdy_A 125 ISAIFS 130 (140)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 888743
No 29
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=48.49 E-value=35 Score=32.26 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=48.9
Q ss_pred chhhhhccccccccch-HhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCC
Q psy7090 100 YLPIFFDGLRETEYPY-KFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSS 172 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY-~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~ 172 (253)
.+|.+...|. ..+|| |.-|..++..+....++-+-. +.++..|+.+|+..|+.|...++.+|..+...++
T Consensus 122 l~~~l~~~L~-d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 122 LCEPLRKCLK-DEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHSS-CSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHcC-CCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 3455666665 44666 455666666666655552211 3588899999999999999999999999876543
No 30
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=47.73 E-value=11 Score=33.34 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=47.4
Q ss_pred chhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHH
Q psy7090 100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKV 163 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~ 163 (253)
+||-|++|+-+..+.=..-.++=+-++++.+..+=.-++++++..|..-|+..|+.|+..+..+
T Consensus 50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~ 113 (257)
T 3gs3_A 50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQA 113 (257)
T ss_dssp GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8999999999976553333344455555543333356899999999999999999999888764
No 31
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=45.32 E-value=1.1e+02 Score=23.88 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=18.3
Q ss_pred ccchHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy7090 139 PHLILPIKNALSTRNPEVICETLKVLQHL 167 (253)
Q Consensus 139 PqLI~PiK~AL~trd~~V~~~~L~~Lq~L 167 (253)
+..+..|..+|+..|++|-..++.+|..+
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQSAAVALGQI 108 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34556666677777777766666665554
No 32
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=44.25 E-value=17 Score=31.55 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=50.8
Q ss_pred cchhhhhcccccc-ccchHhHHHhhHHHHHHcCCCcccc-ccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7090 99 YYLPIFFDGLRET-EYPYKFFASKGIHDLLENGKDKIVP-VLPHLILPIKNALSTRNPEVICETLKVLQHLVTSS 171 (253)
Q Consensus 99 ~yLPiFfdGLrEt-~~PY~FlA~~G~~dLL~~~~~KilP-vlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~ 171 (253)
..+|.+++.|... ....+.-|-..+..+.....+..-. +-..+|.+|-..|.+.|+++-..++.+|..|...+
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~ 138 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS 138 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC
Confidence 5889999999877 4445666666666655432221111 12557888888999999999999999999987544
No 33
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=43.46 E-value=22 Score=37.35 Aligned_cols=126 Identities=13% Similarity=0.216 Sum_probs=86.2
Q ss_pred chhhhhccccccccchHhHHHhhHHHHHHcCC-CccccccccchHHHHHhhcCC-CHHHHHHHHHHHHHHHhcCCccccc
Q psy7090 100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGK-DKIVPVLPHLILPIKNALSTR-NPEVICETLKVLQHLVTSSSMVGEA 177 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~-~KilPvlPqLI~PiK~AL~tr-d~~V~~~~L~~Lq~Lv~~~~~VG~A 177 (253)
+||..+|.+-++..+-+--|..+...+...-. +-+- .++++|-.+|.+. .+..-..+|++|..|+..+ -++
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~---~~~ 168 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA---KDQ 168 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS---HHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHh---HHH
Confidence 45999999999999999999999999987533 3443 3444455555544 5899999999999999765 466
Q ss_pred chhHHHhhchhhhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChhHHHHhhhcCCcccceee
Q psy7090 178 LVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 248 (253)
Q Consensus 178 LvPyyRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~dA~inIKymIPTYeSc~~ 248 (253)
+--++-.|.|++.- .+ .| .+..+++.-.+||+.+...=|-+ -|--+||.--+|+-
T Consensus 169 ~~~~~~~~~p~~~~--~~----~d-------~k~~v~~~~~~~~~~~~~~~~n~---d~~~~~~~~~~~~~ 223 (986)
T 2iw3_A 169 VALRMPELIPVLSE--TM----WD-------TKKEVKAAATAAMTKATETVDNK---DIERFIPSLIQCIA 223 (986)
T ss_dssp HHHHHHHHHHHHHH--HT----TC-------SSHHHHHHHHHHHHHHGGGCCCT---TTGGGHHHHHHHHH
T ss_pred HHHhccchhcchHh--hc----cc-------CcHHHHHHHHHHHHHHHhcCCCc---chhhhHHHHHHHhc
Confidence 67788899999773 11 11 23456666666666665533222 25566676666664
No 34
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=41.16 E-value=54 Score=28.31 Aligned_cols=71 Identities=11% Similarity=0.087 Sum_probs=52.1
Q ss_pred chhhhhccccc-cccchHhHHHhhHHHHHHcC-CCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q psy7090 100 YLPIFFDGLRE-TEYPYKFFASKGIHDLLENG-KDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS 170 (253)
Q Consensus 100 yLPiFfdGLrE-t~~PY~FlA~~G~~dLL~~~-~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~ 170 (253)
.+|.+.+-|.. .....+-.|...+..|.... ...-...+..++.+|-..|.+.|+++...++.+|..|...
T Consensus 150 ~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 150 ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp CHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 56777777764 44556666666777776544 3333455688999999999999999999999999888653
No 35
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=37.94 E-value=31 Score=31.23 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=53.4
Q ss_pred cchhhhhccccccccchHhHHHhhHHHHHHcCCCcccccc--ccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7090 99 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVL--PHLILPIKNALSTRNPEVICETLKVLQHLVTSS 171 (253)
Q Consensus 99 ~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvl--PqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~ 171 (253)
..+|.+++-|...+...+--|...+..|...+.......+ -..|.+|-..|.+.|+++...++.+|..|+..+
T Consensus 371 ~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 371 GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4577777777665555566666667777666544333333 467889999999999999999999999998654
No 36
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=36.77 E-value=11 Score=39.25 Aligned_cols=130 Identities=14% Similarity=0.191 Sum_probs=79.6
Q ss_pred Ccchhhhhccccccccch----HhHHHhhHHHHHHcCCC--ccccccccchHHHHHhhcC------------CCHHHHHH
Q psy7090 98 QYYLPIFFDGLRETEYPY----KFFASKGIHDLLENGKD--KIVPVLPHLILPIKNALST------------RNPEVICE 159 (253)
Q Consensus 98 ~~yLPiFfdGLrEt~~PY----~FlA~~G~~dLL~~~~~--KilPvlPqLI~PiK~AL~t------------rd~~V~~~ 159 (253)
.+|++-+++.+.++.+-+ ...+.+|+--+++..+. ..-..+.+|..|+-.+++. .|++.+..
T Consensus 584 ~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~ 663 (1023)
T 4hat_C 584 EPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKI 663 (1023)
T ss_dssp SCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHH
T ss_pred chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHH
Confidence 467777777666644333 34556677777776553 3555777777777766644 34555666
Q ss_pred HHHHHHHHHhcCCcccccchhHHHhhchh-hhhhhcccCCC-------CcccccchhcccchhHHHHHHHHHHHHhC
Q psy7090 160 TLKVLQHLVTSSSMVGEALVPYYKQILPH-LNMYKDLNKNT-------GDAIDYSQMKRENIGDLVQETLQILERHG 228 (253)
Q Consensus 160 ~L~~Lq~Lv~~~~~VG~ALvPyyRqlLP~-lnlfk~~n~n~-------gD~idy~q~~~~~lgdlI~eTL~~LE~~G 228 (253)
...+|+.++.....+|++..||...+.|. +|+|+.-..++ |..+. .+...+.++-+=.|+|+++|++=
T Consensus 664 l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~-~~~~~r~~r~ik~~il~l~~~~i 739 (1023)
T 4hat_C 664 IANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIAT-KTPKVRGLRTIKKEILKLVETYI 739 (1023)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG-GSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhh-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 66677766666677899999999888776 45666554333 21111 11122345555577888888753
No 37
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=36.34 E-value=64 Score=29.31 Aligned_cols=72 Identities=7% Similarity=0.052 Sum_probs=50.5
Q ss_pred chhhhhccccccccchHhHHHhhHHHHHHcC-CCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7090 100 YLPIFFDGLRETEYPYKFFASKGIHDLLENG-KDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSS 171 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~-~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~ 171 (253)
.+|.+++=|.......+--|...+..|.... ...-......++.+|-..|.+.|+++...++.+|..|+..+
T Consensus 216 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 216 AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp CHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 5666666666544344445555555555543 44445566788889999999999999999999999997543
No 38
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=36.12 E-value=18 Score=34.70 Aligned_cols=89 Identities=19% Similarity=0.245 Sum_probs=62.8
Q ss_pred cchhhhhccccccccchHhHHHhhHHHHHHcCCC---ccccccccchHHHHHhhc-----------CCCHHHHHHHHHHH
Q psy7090 99 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKD---KIVPVLPHLILPIKNALS-----------TRNPEVICETLKVL 164 (253)
Q Consensus 99 ~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~---KilPvlPqLI~PiK~AL~-----------trd~~V~~~~L~~L 164 (253)
.|++.+-+-|.+.++-...-|...+.++.+..++ ...+++|+|+.-|+..++ ..||-.-+..|++|
T Consensus 179 ~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L 258 (618)
T 1w63_A 179 MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLL 258 (618)
T ss_dssp GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHH
Confidence 6788888888776665666666777776654332 456788899988888765 35888888899999
Q ss_pred HHHHhcCCcccccchhHHHhhch
Q psy7090 165 QHLVTSSSMVGEALVPYYKQILP 187 (253)
Q Consensus 165 q~Lv~~~~~VG~ALvPyyRqlLP 187 (253)
+.+....+-..+.+.+++.+++.
T Consensus 259 ~~l~~~~~~~~~~~~~~L~~l~~ 281 (618)
T 1w63_A 259 RILGRNDDDSSEAMNDILAQVAT 281 (618)
T ss_dssp HHHTTTCHHHHHTTHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHh
Confidence 99876554445566666666653
No 39
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=35.46 E-value=1e+02 Score=24.95 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=47.1
Q ss_pred cccchHHHHHhhcCC--CHHHHHHHHHHHHHHHhcCCcccccchhHHHhhchhhhhhhcccCCCCcccccchhcccchhH
Q psy7090 138 LPHLILPIKNALSTR--NPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGD 215 (253)
Q Consensus 138 lPqLI~PiK~AL~tr--d~~V~~~~L~~Lq~Lv~~~~~VG~ALvPyyRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgd 215 (253)
.+.++.-|...|+.. +..++-.+|.+|..|+.-| -|..|..+|.=+..+...++-.---.++.|. +.++++
T Consensus 39 ~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nG---se~vv~~~~~~~~~i~~L~~F~y~d~~g~D~----G~~VR~ 111 (144)
T 1eyh_A 39 FSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTG---SERVSQQCKENMYAVQTLKDFQYVDRDGKDQ----GVNVRE 111 (144)
T ss_dssp HHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHS---CHHHHHHHHHTHHHHHGGGGCCCBCTTSCBC----HHHHHH
T ss_pred HHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhC---CHHHHHHHHHhhHHHhhhccceeeCCCccch----HHHHHH
Confidence 344555666777764 7889999999999999875 3445666665544332212110000124443 355666
Q ss_pred HHHHHHHHHH
Q psy7090 216 LVQETLQILE 225 (253)
Q Consensus 216 lI~eTL~~LE 225 (253)
...+.+++|+
T Consensus 112 kak~l~~Ll~ 121 (144)
T 1eyh_A 112 KAKQLVALLR 121 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHC
Confidence 6666666654
No 40
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=34.69 E-value=46 Score=32.08 Aligned_cols=71 Identities=11% Similarity=0.053 Sum_probs=51.0
Q ss_pred chhhhhcccc-ccccch-HhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCC
Q psy7090 100 YLPIFFDGLR-ETEYPY-KFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSS 172 (253)
Q Consensus 100 yLPiFfdGLr-Et~~PY-~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~ 172 (253)
++|-...+|. ...+|| |--|.-++.-+.+..++-+-+ +.++.-|+..|+.+|+.|...++.+|..++..++
T Consensus 147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 4555555653 566777 344555666666656554432 5899999999999999999999999999987653
No 41
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=33.93 E-value=57 Score=33.57 Aligned_cols=91 Identities=12% Similarity=0.128 Sum_probs=65.1
Q ss_pred Ccchhhhhc--cccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCC-----CH--------H-------
Q psy7090 98 QYYLPIFFD--GLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTR-----NP--------E------- 155 (253)
Q Consensus 98 ~~yLPiFfd--GLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~tr-----d~--------~------- 155 (253)
.+.|+.|++ |+......-+-=|-..+..+.+..+..+.|.++.++.-+...|..+ +. +
T Consensus 534 ~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (980)
T 3ibv_A 534 PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDF 613 (980)
T ss_dssp HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTH
T ss_pred HHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCc
Confidence 457889999 9998777788778888999999888899999999999999988842 21 1
Q ss_pred -HHHHHHHHHHHHHhcCCcccccchhHHHhhchh
Q psy7090 156 -VICETLKVLQHLVTSSSMVGEALVPYYKQILPH 188 (253)
Q Consensus 156 -V~~~~L~~Lq~Lv~~~~~VG~ALvPyyRqlLP~ 188 (253)
--....+++..|+.+...-.+.-.-|.++|+++
T Consensus 614 ~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~p 647 (980)
T 3ibv_A 614 NSQLYLFETVGVLISSGNLTPEEQALYCDSLINA 647 (980)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 122234555556544433334556677877766
No 42
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=33.87 E-value=34 Score=33.62 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=46.4
Q ss_pred HHHHHcCCCccc--cc-cccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC---CcccccchhHHHhhchh
Q psy7090 124 HDLLENGKDKIV--PV-LPHLILPIKNALSTRNPEVICETLKVLQHLVTSS---SMVGEALVPYYKQILPH 188 (253)
Q Consensus 124 ~dLL~~~~~Kil--Pv-lPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~---~~VG~ALvPyyRqlLP~ 188 (253)
.++++.....++ |. +..++.-+-.+|...|+++...+++.|..|+... +.+.+.+.+|+.+|+..
T Consensus 798 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 868 (963)
T 2x19_B 798 AQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIA 868 (963)
T ss_dssp HHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHH
T ss_pred HHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 344445555555 55 6777777888999999999999999999998653 33444456777777654
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=31.93 E-value=1.7e+02 Score=22.42 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=29.5
Q ss_pred chhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy7090 100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHL 167 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~L 167 (253)
-.+.+++.|...+.--+.-|... |-..+. +..+.+|..+|+..|+.|-..++.+|..+
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~---L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYA---LGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQI 72 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHH---HHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHH---HHhcCC-------hhHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 34556666655443333333332 222222 24455666666666777666666655444
No 44
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=31.77 E-value=34 Score=31.62 Aligned_cols=77 Identities=19% Similarity=0.341 Sum_probs=50.7
Q ss_pred chhhhhccccccccchHhHHHhhHHHHHHcCCCcccccc--ccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccc
Q psy7090 100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVL--PHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGE 176 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvl--PqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~ 176 (253)
.+|.+++-|+..+.--+--|-..+..|...+....+-.| ...|.||-.-|.+.|++++..+|.+|..+.+.++-.|+
T Consensus 359 ~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~ 437 (510)
T 3ul1_B 359 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 437 (510)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccc
Confidence 567777777665554444444455555444332111111 24577888889999999999999999999887766654
No 45
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=31.72 E-value=1.1e+02 Score=25.71 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=50.0
Q ss_pred cccchHHHHHh-hc--CCCHHHHHHHHHHHHHHHhcCCcccccchhHHHhhchh---hhhhhcccCCCCcccccchhccc
Q psy7090 138 LPHLILPIKNA-LS--TRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPH---LNMYKDLNKNTGDAIDYSQMKRE 211 (253)
Q Consensus 138 lPqLI~PiK~A-L~--trd~~V~~~~L~~Lq~Lv~~~~~VG~ALvPyyRqlLP~---lnlfk~~n~n~gD~idy~q~~~~ 211 (253)
.+.++.-|... |+ -++...+-.+|.+|..|+.-+. |..|...|.-+.. |.-|.-.. .++.|.| .
T Consensus 68 ~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGs---e~vv~~~r~~i~~I~~L~~F~y~D---~~G~D~G----~ 137 (176)
T 1xgw_A 68 FPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGS---ERVVTSAREHIYDLRSLENYHFVD---EHGKDQG----I 137 (176)
T ss_dssp HHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHTHHHHHGGGGCCCBC---TTSCBCH----H
T ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCC---HHHHHHHHHhHHHHHhhccCeeEC---CCCCChH----H
Confidence 35556666555 34 3789999999999999998874 6777777776665 33343211 1234433 5
Q ss_pred chhHHHHHHHHHHH
Q psy7090 212 NIGDLVQETLQILE 225 (253)
Q Consensus 212 ~lgdlI~eTL~~LE 225 (253)
++++...+.+++|+
T Consensus 138 ~VR~kAk~i~~LL~ 151 (176)
T 1xgw_A 138 NIRQKVKELVEFAQ 151 (176)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
Confidence 56666666666653
No 46
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=31.48 E-value=38 Score=27.06 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=53.1
Q ss_pred CCCCcchhhhhccccccccchHhHHHhhHHHHHHcCCCcc-ccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q psy7090 95 LNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKI-VPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS 170 (253)
Q Consensus 95 LDy~~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~Ki-lPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~ 170 (253)
=|+....+.|++.|.-.+.--+.-|-+.+..++....+.+ .=+=...|.+|-..|.+.++++...++.+|..|+..
T Consensus 8 ~~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 84 (252)
T 4db8_A 8 HHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84 (252)
T ss_dssp CCTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred ccccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 3455567888888887777777777777766665321111 111124677788889999999999999999999753
No 47
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=30.49 E-value=39 Score=26.97 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=46.7
Q ss_pred chhhhhccccccccchHhHHHhhHHHHHHcCCCcccc-ccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7090 100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVP-VLPHLILPIKNALSTRNPEVICETLKVLQHLVTSS 171 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilP-vlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~ 171 (253)
.+|.+++-|...+...+.-|-..+..|.....+..-. +-...|.+|-..|.+.|+++...++.+|..|+..+
T Consensus 139 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 211 (252)
T 4db8_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 211 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC
Confidence 4677777776654444444555555554332221111 12567888889999999999999999999997443
No 48
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=30.24 E-value=66 Score=29.09 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=46.4
Q ss_pred chhhhhccccccccc-hHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q psy7090 100 YLPIFFDGLRETEYP-YKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS 170 (253)
Q Consensus 100 yLPiFfdGLrEt~~P-Y~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~ 170 (253)
.+|.+++-|.+..++ .+--|...+..|..........+...++.+|-..|.+.|+++...++.+|..|+..
T Consensus 203 ~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 274 (528)
T 4b8j_A 203 ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG 274 (528)
T ss_dssp CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 455566666443333 23333334444444334455556688889999999999999999999999888643
No 49
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=30.19 E-value=33 Score=31.70 Aligned_cols=77 Identities=18% Similarity=0.351 Sum_probs=50.1
Q ss_pred chhhhhccccccccchHhHHHhhHHHHHHcCCCcccc-cc-ccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccc
Q psy7090 100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVP-VL-PHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGE 176 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilP-vl-PqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG~ 176 (253)
.+|.+++-|...+..-+--|-..+..|...+...-+- ++ --.|.||-.-|.+.|++++..+|.+|..+.+.++..|+
T Consensus 378 ~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~ 456 (529)
T 3tpo_A 378 LVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 456 (529)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccC
Confidence 5666666666655555544555555554443321111 11 12577888889999999999999999999887766654
No 50
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=28.73 E-value=28 Score=36.21 Aligned_cols=92 Identities=12% Similarity=0.154 Sum_probs=61.5
Q ss_pred CcchhhhhccccccccchHhHHHhhHHHHHHcCCCcc--------ccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q psy7090 98 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKI--------VPVLPHLILPIKNALSTRNPEVICETLKVLQHLVT 169 (253)
Q Consensus 98 ~~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~Ki--------lPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~ 169 (253)
.+.|..+|+||.|...--.-.|-..+..+-+..+... -|.+++++.-+-.++..-+++-.....+++..+++
T Consensus 539 ~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 539 RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4455567777766533244444444444444433333 57899999999999988889999999999999986
Q ss_pred cCCcccccchhHHHhhchhhh
Q psy7090 170 SSSMVGEALVPYYKQILPHLN 190 (253)
Q Consensus 170 ~~~~VG~ALvPyyRqlLP~ln 190 (253)
..+ -.++...|..+|++.++
T Consensus 619 ~~~-~~~~~~~~l~~L~~~~~ 638 (1023)
T 4hat_C 619 EER-SVAERNRLLSDLMQLPN 638 (1023)
T ss_dssp TCC-SHHHHHHHHHHHTHHHH
T ss_pred hCC-CHhhHHHHHHHHHHhHH
Confidence 643 12234558888887766
No 51
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=28.67 E-value=36 Score=26.44 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=47.3
Q ss_pred chhhhhccccccccchHhHHHhhHHHHHHcCC-CccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy7090 100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGK-DKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLV 168 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~-~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv 168 (253)
.+|.+++-|...+.-.+--|-..+..|..... .+..-+-...|.+|...|.+.|+++-..++.+|..|+
T Consensus 139 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 57777777776554455555556666665432 2222233457788889999999999999999998884
No 52
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=27.94 E-value=60 Score=25.74 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=27.7
Q ss_pred cchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7090 140 HLILPIKNALSTRNPEVICETLKVLQHLVTSS 171 (253)
Q Consensus 140 qLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~ 171 (253)
..+..||+-|+++|+.+.-.||.+|..+|.-.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNc 73 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNC 73 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhc
Confidence 34678999999999999999999999998754
No 53
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.23 E-value=2.2e+02 Score=22.04 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=41.1
Q ss_pred CcchhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy7090 98 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHL 167 (253)
Q Consensus 98 ~~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~L 167 (253)
..-++.+++.|.+.+ ..+-.+.+..|-+.+. +..+..|..+|...|+.|-..++.+|..+
T Consensus 18 ~~~~~~L~~~L~~~~---~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~ 77 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS---YYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQI 77 (211)
T ss_dssp GGGHHHHHHHTTCSS---HHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHcCCC---HHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 346777888876443 3344444444444443 56777888999999999998888887666
No 54
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=26.74 E-value=46 Score=25.78 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=46.7
Q ss_pred chhhhhccccccccchHhHHHhhHHHHHHcCCCcccc-ccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7090 100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVP-VLPHLILPIKNALSTRNPEVICETLKVLQHLVTSS 171 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilP-vlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~ 171 (253)
.+|.+++-|...+..-+.-|-..+..|.....+..-. +-...|.+|-..|.+.|+++...++.+|..|+..+
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 5677777776665444444444555554332222111 12457788888899999999999999999998653
No 55
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=26.62 E-value=1.5e+02 Score=24.05 Aligned_cols=80 Identities=15% Similarity=0.257 Sum_probs=47.6
Q ss_pred ccchHHHHHhhcC--CCHHHHHHHHHHHHHHHhcCCcccccchhHHHhhchhhhhhhcccCCCCcccccchhcccchhHH
Q psy7090 139 PHLILPIKNALST--RNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDL 216 (253)
Q Consensus 139 PqLI~PiK~AL~t--rd~~V~~~~L~~Lq~Lv~~~~~VG~ALvPyyRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdl 216 (253)
+.++.-|...|+. ++..++-.+|.+|..|+.-| -|..|..+|.=+..+...++-.---.++.| .+.|+++.
T Consensus 58 ~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nG---se~vv~~~r~~~~~I~~L~~F~y~d~~g~D----~G~nVR~k 130 (148)
T 1inz_A 58 SEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTG---SERVSQQCKENMYAVQTLKDFQYVDRDGKD----QGVNVREK 130 (148)
T ss_dssp HHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTT---CHHHHHHHHHTHHHHHHHHHCCCCCSSCCC----CCHHHHHH
T ss_pred HHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhC---CHHHHHHHHHhHHHHHhhcceeeeCCCCcC----chHHHHHH
Confidence 3344455666666 48899999999999999875 345566666554433221211000012334 34677777
Q ss_pred HHHHHHHHH
Q psy7090 217 VQETLQILE 225 (253)
Q Consensus 217 I~eTL~~LE 225 (253)
..+.+++|+
T Consensus 131 Ak~l~~LL~ 139 (148)
T 1inz_A 131 AKQLVALLR 139 (148)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 777777764
No 56
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=25.97 E-value=67 Score=30.30 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=28.7
Q ss_pred ccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7090 137 VLPHLILPIKNALSTRNPEVICETLKVLQHLVTSS 171 (253)
Q Consensus 137 vlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~ 171 (253)
+++.++.+++++|.++|+.|=..|..+|-++...+
T Consensus 118 ~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~ 152 (591)
T 2vgl_B 118 ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN 152 (591)
T ss_dssp GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC
Confidence 45667778999999999999988888888887644
No 57
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=25.13 E-value=19 Score=34.83 Aligned_cols=98 Identities=12% Similarity=0.116 Sum_probs=65.3
Q ss_pred ecCCCCCCCcchhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCC-------------CHHH
Q psy7090 90 EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTR-------------NPEV 156 (253)
Q Consensus 90 v~~e~LDy~~yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~tr-------------d~~V 156 (253)
.+++.++++.|++.+.+=|.|.++--..-|..-+.|+..+.++...+++|+++.-|++-+... ||=.
T Consensus 178 ~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~ 257 (621)
T 2vgl_A 178 TSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 257 (621)
T ss_dssp HCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHH
T ss_pred hChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchH
Confidence 467777777899999998877655444555555667766666667789999998888776543 6777
Q ss_pred HHHHHHHHHHHHhcC-CcccccchhHHHhhch
Q psy7090 157 ICETLKVLQHLVTSS-SMVGEALVPYYKQILP 187 (253)
Q Consensus 157 ~~~~L~~Lq~Lv~~~-~~VG~ALvPyyRqlLP 187 (253)
-+..|+.|+.+.... +-..+.+...+.+++.
T Consensus 258 qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~ 289 (621)
T 2vgl_A 258 SVKLLRLLQCYPPPEDPAVRGRLTECLETILN 289 (621)
T ss_dssp HHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 777788777765432 1233344445555553
No 58
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=25.11 E-value=1.6e+02 Score=24.12 Aligned_cols=80 Identities=13% Similarity=0.213 Sum_probs=47.5
Q ss_pred ccchHHHHHhhcC---CCHHHHHHHHHHHHHHHhcCCcccccchhHHHhhchhhhhhhcccCCCCcccccchhcccchhH
Q psy7090 139 PHLILPIKNALST---RNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGD 215 (253)
Q Consensus 139 PqLI~PiK~AL~t---rd~~V~~~~L~~Lq~Lv~~~~~VG~ALvPyyRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgd 215 (253)
+.++.-|.+.|+. ++...+-.+|.+|..|+.-+ -+..+...|.-+..+...++-.--=.++-|.| .++++
T Consensus 46 ~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nG---se~vv~~~r~~~~~i~~L~~F~~~d~~G~D~G----~~VR~ 118 (150)
T 3onk_A 46 EEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHG---SERFIDDTRNSINLIRILETFHYIDSQGRDQG----INVRT 118 (150)
T ss_dssp HHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHS---CHHHHHHHHTTHHHHHGGGGCCCBCTTSCBCH----HHHHH
T ss_pred HHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhhhcccccCCCCCchH----HHHHH
Confidence 3445556666654 47999999999999999876 35566666665555543332111001244433 45666
Q ss_pred HHHHHHHHHH
Q psy7090 216 LVQETLQILE 225 (253)
Q Consensus 216 lI~eTL~~LE 225 (253)
...+.+++|+
T Consensus 119 kak~l~~LL~ 128 (150)
T 3onk_A 119 RVKALIELLS 128 (150)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 6666666553
No 59
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=24.88 E-value=96 Score=27.20 Aligned_cols=118 Identities=12% Similarity=0.055 Sum_probs=59.5
Q ss_pred chhhhhccccccccchHhHHHhhHHHHHHcCCCcccccc-ccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccc---
Q psy7090 100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVL-PHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVG--- 175 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvl-PqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~~~VG--- 175 (253)
-+|.+.+-|+..+.-.+--|-..+..|.....+.+--++ --.|.+|=.-|.+.|++|...++.+|..|+..++..-
T Consensus 168 gi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~ 247 (296)
T 1xqr_A 168 GFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 247 (296)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHH
Confidence 455555555544333333333344444433222111111 1345566677889999999999999999986632110
Q ss_pred ccchhHHHhhchhhhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChh
Q psy7090 176 EALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGED 231 (253)
Q Consensus 176 ~ALvPyyRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~d 231 (253)
.+..+.|.++|-- ...++ |. .+...|.++-..+++|++=+++
T Consensus 248 ~~~~~~l~~lL~~------~~~~l-------q~-~e~~~e~~~~~~~il~~~f~~~ 289 (296)
T 1xqr_A 248 REPELGLEELLRH------RCQLL-------QQ-HEEYQEELEFCEKLLQTCFSSP 289 (296)
T ss_dssp HCGGGCHHHHHHH------HHHHH-------TT-CGGGHHHHHHHHHHHHHHCC--
T ss_pred hccHHHHHHHHHH------HHHHc-------cc-hHHHHHHHHHHHHHHHHHcCCC
Confidence 0111223333311 10011 22 2334777788888888876543
No 60
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=24.88 E-value=47 Score=31.21 Aligned_cols=64 Identities=17% Similarity=0.194 Sum_probs=46.9
Q ss_pred chhhhhccccccccchHhHHHhhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHH
Q psy7090 100 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKV 163 (253)
Q Consensus 100 yLPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~ 163 (253)
+|+-|++-+.|..+.=..-.++=+-++|+.+..+=.-.+++++..|..-|+..|+.|+..+..+
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~ 123 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILT 123 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8899999888876653333455555566554444555679999999999999999999887654
No 61
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.76 E-value=68 Score=27.38 Aligned_cols=47 Identities=26% Similarity=0.410 Sum_probs=34.1
Q ss_pred hhHHHHHHcCCCccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7090 121 KGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSS 171 (253)
Q Consensus 121 ~G~~dLL~~~~~KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~ 171 (253)
..+-|++....+ -| -..+..||+-|+++|+.+.-.||.+|..+|+-.
T Consensus 30 leicD~I~~~~~--~~--k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNc 76 (226)
T 3zyq_A 30 LQICDLIRQGDT--QA--KYAVNSIKKKVNDKNPHVALYALEVMESVVKNC 76 (226)
T ss_dssp HHHHHHHHTTSS--CH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCc--cH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 345566654221 11 234668999999999999999999999998754
No 62
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=24.32 E-value=74 Score=25.95 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=27.3
Q ss_pred chHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7090 141 LILPIKNALSTRNPEVICETLKVLQHLVTSS 171 (253)
Q Consensus 141 LI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~ 171 (253)
.+..||+=|+++|+.|.-.||.+|..+|+-.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNc 83 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANC 83 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999764
No 63
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=23.80 E-value=78 Score=25.44 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=27.5
Q ss_pred chHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7090 141 LILPIKNALSTRNPEVICETLKVLQHLVTSS 171 (253)
Q Consensus 141 LI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~ 171 (253)
.+..||+=|+++|+.+.-.||.+|..+|.-.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNC 69 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHC 69 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc
Confidence 3577899999999999999999999999764
No 64
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=22.65 E-value=66 Score=25.18 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=45.1
Q ss_pred hhhhhccccccccchHhHHHhhHHHHHHcCCC-ccccccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q psy7090 101 LPIFFDGLRETEYPYKFFASKGIHDLLENGKD-KIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS 170 (253)
Q Consensus 101 LPiFfdGLrEt~~PY~FlA~~G~~dLL~~~~~-KilPvlPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~ 170 (253)
+|.+++-|...+.--+.-|-..+..+.....+ +-.=+-...|.+|-..|.+.|+++...++.+|..|...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 74 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 74 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 45566666655544455555566666544331 11111124677788889999999999999999999654
No 65
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=22.39 E-value=86 Score=25.36 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=27.5
Q ss_pred chHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7090 141 LILPIKNALSTRNPEVICETLKVLQHLVTSS 171 (253)
Q Consensus 141 LI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~ 171 (253)
.+..||+-|+++|+.+.-.||.+|..+|+-.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNC 79 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSC 79 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999998754
No 66
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=20.86 E-value=45 Score=24.47 Aligned_cols=46 Identities=13% Similarity=0.288 Sum_probs=30.2
Q ss_pred hHHHhhchhhhhhhcccCCCCcccccchhcccchhHHHHHHHHHHHHhCChhHHHHhhhcCC
Q psy7090 180 PYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIP 241 (253)
Q Consensus 180 PyyRqlLP~lnlfk~~n~n~gD~idy~q~~~~~lgdlI~eTL~~LE~~GG~dA~inIKymIP 241 (253)
.-|+++|-+|+.|++.+ .+..++|+++-++|.- =+|-..-.....|
T Consensus 29 ~~Y~~FL~im~~fk~~~--------------~~~~~v~~rV~~Lf~~--hpdLi~gFn~FLP 74 (80)
T 2cr7_A 29 ATYNGFLEIMKEFKSQS--------------IDTPGVIRRVSQLFHE--HPDLIVGFNAFLP 74 (80)
T ss_dssp HHHHHHHHHHHHHHTTS--------------SCHHHHHHHHHHHGGG--CHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhcC--------------CCHHHHHHHHHHHHcC--CHHHHHHHHHHCc
Confidence 46888888999888642 4667888888888873 3554433333333
No 67
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=20.77 E-value=63 Score=30.86 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=18.9
Q ss_pred cccchHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q psy7090 138 LPHLILPIKNALSTRNPEVICETLKVLQHLVT 169 (253)
Q Consensus 138 lPqLI~PiK~AL~trd~~V~~~~L~~Lq~Lv~ 169 (253)
++.++.+|+++|.++|+.|=.+|..+|-++..
T Consensus 140 ~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~ 171 (618)
T 1w63_A 140 CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR 171 (618)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666555555544
No 68
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=20.07 E-value=1e+02 Score=25.38 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=33.9
Q ss_pred hHHHHHHcCCCcccccccc-chHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7090 122 GIHDLLENGKDKIVPVLPH-LILPIKNALSTRNPEVICETLKVLQHLVTSS 171 (253)
Q Consensus 122 G~~dLL~~~~~KilPvlPq-LI~PiK~AL~trd~~V~~~~L~~Lq~Lv~~~ 171 (253)
.+-|++....+ -|+ .+..||+=|+++|+.|.-.||.+|..+|+-.
T Consensus 36 eicD~I~~~~~-----~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNC 81 (171)
T 1juq_A 36 GFCDQINKELE-----GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNC 81 (171)
T ss_dssp HHHHHHHHSTT-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCc-----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc
Confidence 55566654322 233 4678999999999999999999999999764
Done!