RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7090
(253 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 2e-05
Identities = 32/210 (15%), Positives = 64/210 (30%), Gaps = 31/210 (14%)
Query: 49 PKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK--EDIKTLNYQYYLPIFFD 106
PK + + D+ M + S S ++ K E++ +NY++ +
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 107 GLRETEYPYKFFASKGIHDLLENGKDKIVP---VLPHLILPIKNALSTRNPE--VI---- 157
R+ + + + D L N L ++ AL P V+
Sbjct: 101 EQRQPSMMTRMYIEQ--RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 158 ------CETLKVLQHLVTSSSM--------VGEALVPYYKQILPHL-NMYKDLNKNTGDA 202
L V M + P + +L L + ++ N
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP--ETVLEMLQKLLYQIDPNWTSR 216
Query: 203 IDYSQMKRENIGDLVQETLQILERHGGEDA 232
D+S + I + E ++L+ E+
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 3e-05
Identities = 39/212 (18%), Positives = 68/212 (32%), Gaps = 55/212 (25%)
Query: 87 SWKEDIKTLNYQYYLPIFFDGLRETE-YPYKFFASKGIHDLLENGK-------------- 131
SW E + +FF G+R E YP + D LEN +
Sbjct: 288 SW-ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
Query: 132 ---DKIV-------PVLPHLILPIKNALSTRNPEVIC---ETLKVLQ-HL--VTSSSMVG 175
V P + + + N +N V+ ++L L L + S +
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVN--GAKN-LVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 176 EALVPY-------YKQILP-----HLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQI 223
++ +P+ + LP H L D I+ + + N+ + +QI
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFH----SHLLVPASDLIN-KDLVKNNV-SFNAKDIQI 457
Query: 224 --LERHGGEDACIYIKYMIPTYESCILRYTVN 253
+ G D + + CI+R V
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Score = 42.0 bits (98), Expect = 1e-04
Identities = 47/323 (14%), Positives = 92/323 (28%), Gaps = 109/323 (33%)
Query: 7 ARLI--VCHRARDLQYGRRPSLPGPVVPAFS---LQT---HQ-KNTITGAPPKCVPKDKT 57
+ + V + G+ + + F L+ H + + K K
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK- 120
Query: 58 YDYTSMFRTYY----------------------SRGDFPIAMEFKSVGNKISWKEDIKTL 95
+ + Y G+ + F GN + E+++ L
Sbjct: 121 ----ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 96 NYQYYLPI---FFDG--------LRETEYPYKFFASKG--IHDLLENGKDKIVPVLPHLI 142
YQ Y + +R T K F ++G I + LEN + P +L+
Sbjct: 177 -YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF-TQGLNILEWLENPSNT--PDKDYLL 232
Query: 143 -----LPIKNALSTRNPEVICETLKV----LQHLVTSSSMVGEALVP------------Y 181
P+ + + V + L L+ + ++ + LV +
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 182 YK-----------------QILPHLN----MYKD-LNKNTGDAIDYSQM------KRENI 213
+ + P+ + + +D L N G S M +E +
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP---SPMLSISNLTQEQV 349
Query: 214 GDLVQETLQILERHGGEDACIYI 236
D V +T H + I
Sbjct: 350 QDYVNKT----NSHLPAGKQVEI 368
Score = 33.5 bits (76), Expect = 0.082
Identities = 47/299 (15%), Positives = 84/299 (28%), Gaps = 137/299 (45%)
Query: 15 ARDL----------QYGRRPSLPGPVVPAFSLQTHQKNTITGAPPKCVPKDKTY------ 58
A+D+ YG FS+ N P + T
Sbjct: 1642 AQDVWNRADNHFKDTYG------------FSILDIVINN---------PVNLTIHFGGEK 1680
Query: 59 ------DYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETE 112
+Y++M G FK + + + +Y + L T+
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEI--------NEHSTSYTFRSEK--GLLSATQ 1730
Query: 113 Y--PYKFFASKGI-HDLLENGKDKIVPVLP----H-------L-----ILPIKNALST-- 151
+ P K DL G ++P H L ++ I++ +
Sbjct: 1731 FTQPALTLMEKAAFEDLKSKG---LIPADATFAGHSLGEYAALASLADVMSIESLVEVVF 1787
Query: 152 -R-----------------------NPEVICETL--KVLQHLVTS-SSMVGEALVPYYKQ 184
R NP + + + LQ++V G + +
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV-----E 1842
Query: 185 ILPHLNMYKDLNKNT--------GD--AIDY-----SQMKRENIGDLV--QETLQILER 226
I +N N GD A+D + +K + I D++ Q++L LE
Sbjct: 1843 I---------VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI-DIIELQKSLS-LEE 1890
Score = 30.0 bits (67), Expect = 0.88
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 14/69 (20%)
Query: 190 NMYKDLNKNTG------DAIDYSQMKRENIG----DLVQETLQILERH-GGEDAC-IYIK 237
M DL K + + D ++ G D+V L H GGE I
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRAD--NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 238 YMIPTYESC 246
Y +E+
Sbjct: 1688 YSAMIFETI 1696
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 37.8 bits (86), Expect = 0.003
Identities = 12/146 (8%), Positives = 44/146 (30%), Gaps = 20/146 (13%)
Query: 97 YQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVP-VLPHLILPIKNALSTRNPE 155
+ L L + + L+ + + + ++ HL+ + S
Sbjct: 173 HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTR 232
Query: 156 VICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGD 215
+ + + G + Y ++I+P + + + + + + +
Sbjct: 233 TYIQCIAAISR------QAGHRIGEYLEKIIPLV-------------VKFCNVDDDELRE 273
Query: 216 LVQETLQILERHGGEDACIYIKYMIP 241
+ + R ++ ++ +I
Sbjct: 274 YCIQAFESFVRRCPKEVYPHVSTIIN 299
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 35.2 bits (80), Expect = 0.017
Identities = 21/158 (13%), Positives = 46/158 (29%), Gaps = 15/158 (9%)
Query: 90 EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 149
+ + + ++ + A L E ++VP L +++ + A
Sbjct: 433 SQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF 492
Query: 150 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMK 209
S + + + L S Y + ++P L N + D +
Sbjct: 493 SKYQHKNLLILYDAIGTLADSVGHHLNK-PEYIQMLMPPLIQK--WNMLKDEDKDLFPL- 548
Query: 210 RENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCI 247
E L + ++ Y P Y+ C+
Sbjct: 549 --------LECLSSVATALQSG---FLPYCEPVYQRCV 575
Score = 29.8 bits (66), Expect = 0.89
Identities = 14/94 (14%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 96 NYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPE 155
+ ++ F + E + + + LLE D+++P + +++ + ++
Sbjct: 212 HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDEN 271
Query: 156 VICETLKVLQHLVTSSSMVGEALVPYYKQILPHL 189
V E + L + + LV + +++P L
Sbjct: 272 VALEACEFWLTLA-EQPICKDVLVRHLPKLIPVL 304
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 31.5 bits (71), Expect = 0.23
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 10/149 (6%)
Query: 42 NTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYL 101
P+ D + ++ + + + + K +S + + + L
Sbjct: 268 ELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS-ADCRENVIMSQIL 326
Query: 102 PIFFDGLRETEYPYKFFASKGIHDLLEN-GKDKIVPVLPHLILPIKNALSTRNPEVICET 160
P + + + K + I L GKD + HL+ L PEV
Sbjct: 327 PCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNI 383
Query: 161 LKVLQHLVTSSSMVGEALVPYYKQILPHL 189
+ L + + + +LP +
Sbjct: 384 ISNLDCVNEVIGI-----RQLSQSLLPAI 407
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 30.4 bits (68), Expect = 0.41
Identities = 14/134 (10%), Positives = 37/134 (27%), Gaps = 15/134 (11%)
Query: 101 LPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILP-IKNALSTRNPEVICE 159
D +E + K + + + +L I + + P++ E
Sbjct: 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRME 165
Query: 160 TLKVLQH-LVTSSSMVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQ 218
++ + +++P + + D + I +
Sbjct: 166 CTQLFNASMKEEKDGYSTLQRYLKDEVVPI------VIQIVNDT-------QPAIRTIGF 212
Query: 219 ETLQILERHGGEDA 232
E+ IL + G +
Sbjct: 213 ESFAILIKIFGMNT 226
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase; methionine, synthase,
methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis
thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A
1u22_A*
Length = 765
Score = 29.4 bits (66), Expect = 1.2
Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 96 NYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPE 155
NY Y +P E + + + K +++ E K V +P L+ P+ L ++ +
Sbjct: 116 NYHYIVPEL-----GPEVNFSYASHKAVNEYKE-AKALGVDTVPVLVGPVSYLLLSKAAK 169
Query: 156 VICETLKVLQHLVTSSSMVGEALVPYYKQILPHLN 190
+ ++ ++L L ++P YK+++ L
Sbjct: 170 GVDKSFELLSLL--------PKILPIYKEVITELK 196
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 29.0 bits (64), Expect = 1.7
Identities = 13/136 (9%), Positives = 34/136 (25%), Gaps = 12/136 (8%)
Query: 119 ASKGIHDLLEN-GKDKIVPVLPHLILPIKNALSTRN-----PEVICETLKVLQHLVTSSS 172
S I +L+E + P+ + + N L +V +
Sbjct: 473 CSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA- 531
Query: 173 MVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMK-RENIGDLVQETLQILERHGGED 231
+ + I + L + + ++ +++ +L L +L +
Sbjct: 532 --TDTVAETSASISTFV--MDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKS 587
Query: 232 ACIYIKYMIPTYESCI 247
Sbjct: 588 PSSVEPVADMLMGLFF 603
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 27.4 bits (61), Expect = 5.2
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 145 IKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMY 192
NP + ++ + + + E L ++ L + Y
Sbjct: 91 FVKDCEDPNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCLKDEDPY 136
>1vpb_A Putative modulator of DNA gyrase; structural genomics, joint for
structural genomics, JCSG, protein structure initiative
hydrolase; 1.75A {Bacteroides thetaiotaomicron} SCOP:
d.283.1.1
Length = 451
Score = 27.2 bits (61), Expect = 5.4
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 204 DYSQMKRENIGDLVQETLQILERHGGEDACIYI 236
+ M + L Q + ++G + A + +
Sbjct: 9 HHHHMITDENKKLAQWAMDYALKNGCQAAKVLL 41
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo
sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Length = 61
Score = 25.1 bits (55), Expect = 5.6
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 173 MVGEALVPYYKQILPHLNMYKDLNKNTGDAIDYSQMK-------RENIGDLVQETLQILE 225
+GE L P + + P +K TG ++ S + +++ V E ++++
Sbjct: 4 ALGERLYPRVQAMQPAF-----ASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELII 58
Query: 226 RHG 228
HG
Sbjct: 59 AHG 61
>2d48_A Interleukin-4; four helix bundle, cytokine; 1.65A {Homo sapiens}
PDB: 1itl_A 1itm_A 2b90_A 1cyl_A 1hik_A 1iar_A 1rcb_A
2b8u_A 2cyk_A 2int_A 3bpl_A* 3bpn_A* 2b8y_A 1hij_A
1hzi_A 2b8z_A 1bbn_A 1bcn_A 1iti_A 2b8x_A ...
Length = 129
Score = 26.1 bits (56), Expect = 6.8
Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 4/107 (3%)
Query: 121 KGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVP 180
K ++ L E + + KN T E C VL+ + L
Sbjct: 12 KDLNSLTEQKTLCTELTVTDIFAASKN---TTEKETFCRAATVLRQFYSHHEKDTRCLGA 68
Query: 181 YYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQ-ILER 226
+Q H + + L + + + + + + Q TL+ LER
Sbjct: 69 TAQQFHRHKQLIRFLKRLDRNLWGLAGLNSCPVKEANQSTLENFLER 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.422
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,951,608
Number of extensions: 228226
Number of successful extensions: 451
Number of sequences better than 10.0: 1
Number of HSP's gapped: 447
Number of HSP's successfully gapped: 21
Length of query: 253
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 162
Effective length of database: 4,160,982
Effective search space: 674079084
Effective search space used: 674079084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)