RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7090
(253 letters)
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 861
Score = 47.9 bits (112), Expect = 5e-07
Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 7/127 (5%)
Query: 102 PIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRN--PEVICE 159
P L + + P A I D+ + ++ ++ + +S N E+
Sbjct: 642 PYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPA 701
Query: 160 TLKVLQHLVTSSSMVGEALVPYYKQILPHL--NMYKDLNKNTGDAIDYSQMKRENIGDLV 217
L V + ++ +G +PY I+ T +A+DY E + D
Sbjct: 702 VLSVFGDIASN---IGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY 758
Query: 218 QETLQIL 224
+ L
Sbjct: 759 VGIVAGL 765
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 46.3 bits (108), Expect = 2e-06
Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 3/98 (3%)
Query: 92 IKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALST 151
+ ++ + LP L + + + + I P+L + I L
Sbjct: 955 LTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLED 1014
Query: 152 RNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHL 189
+ V L + + +LPHL
Sbjct: 1015 PDLNVRRVALVTFNSAAHN---KPSLIRDLLDTVLPHL 1049
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 36.6 bits (83), Expect = 0.003
Identities = 20/169 (11%), Positives = 50/169 (29%), Gaps = 10/169 (5%)
Query: 42 NTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYL 101
K + + + + +A++ S + + + L
Sbjct: 608 QRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNIL 667
Query: 102 PIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETL 161
+ + +++ + + + DL + + P + + + L+ V
Sbjct: 668 TLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNAT 727
Query: 162 KVLQHLVTSSSMVGEALVPYYKQILPHL-------NMYKDLNKNTGDAI 203
+ + +G + PY +L L N K L +NT I
Sbjct: 728 WAIGEISIQ---MGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITI 773
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 36.3 bits (82), Expect = 0.004
Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 8/128 (6%)
Query: 102 PIFFDGLRETEYPYKFFASKG-IHDLLENGKDKIVPVLPHLILPIKNALSTRN--PEVIC 158
P GL+ A+ G + DL + I+P ++ + L N V
Sbjct: 652 PFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKP 711
Query: 159 ETLKVLQHLVTSSSMVGEALVPYYKQILPHLN--MYKDLNKNTGDAIDYSQMKRENIGDL 216
+ L V + + +G Y + +L L ++K+ D +DY RE+ +
Sbjct: 712 QILSVFGDIALA---IGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEA 768
Query: 217 VQETLQIL 224
+Q L
Sbjct: 769 YTGIVQGL 776
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 959
Score = 33.7 bits (76), Expect = 0.023
Identities = 21/167 (12%), Positives = 51/167 (30%), Gaps = 24/167 (14%)
Query: 96 NYQYYLPIFFDGLRETEYPYKFFASKGIHDLLEN-----------GKDKIVPVLPHLILP 144
+PI L+ EY +A+ I +L K+ I L+
Sbjct: 493 QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKN 552
Query: 145 IKNALSTRNPEV--ICETLKVLQHLVTSSSMVGEALVPYYKQILPHL-NMYKDLNKNTGD 201
+ + + E +++ + +++ P + Q+L + + KN +
Sbjct: 553 LIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSN 612
Query: 202 AIDYSQMKRENIGDLVQETLQILERHGGEDACI-YIKYMIPTYESCI 247
E++ + + + M+PT+ +
Sbjct: 613 PRFTHY---------TFESIGAILNYTQRQNLPLLVDSMMPTFLTVF 650
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 29.4 bits (65), Expect = 0.49
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 145 IKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMY 192
NP + ++ + + + E L ++ L + Y
Sbjct: 88 FVKDCEDPNPLIRALAVRTMGCIRVDK--ITEYLCEPLRKCLKDEDPY 133
>d1m0wa1 c.30.1.4 (A:216-323) Eukaryotic glutathione synthetase,
substrate-binding domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 108
Score = 24.7 bits (54), Expect = 5.8
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 16 RDLQYGRRPSLPGPVVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSM-FRTYYSRGDFP 74
+ L+ V + K I K +D + + +RT Y+ D+
Sbjct: 20 KVLELNLLEKFGTKSVRLTFDDVNDKLFIDDKTGKLFIRDTEQEIAVVYYRTGYTTTDYT 79
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 24.9 bits (53), Expect = 8.7
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 181 YYKQILPHLNMYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHG 228
Y + P +++Y+++ K ID S+ ++ ++ E +QI ++ G
Sbjct: 153 YLQSTKPIIDLYEEMGKVK--KIDASK----SVDEVFDEVVQIFDKEG 194
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.422
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 981,039
Number of extensions: 46220
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 11
Length of query: 253
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,268,006
Effective search space: 215561020
Effective search space used: 215561020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.4 bits)