BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7091
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CP8|A Chain A, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|B Chain B, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|C Chain C, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|D Chain D, Crystal Structure Of Gida From Chlorobium Tepidum
Length = 641
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 90 KISWKEDIKTLNYQYYLPIFFDGL--RETEYPYKFFASKGIHDLL 132
KI KE I Q Y+ + D L +ET+ PY+ F S H L+
Sbjct: 410 KILGKELIVLGRDQAYIGVLIDDLITKETKEPYRMFTSSAEHRLI 454
>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3
Length = 497
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 20/124 (16%)
Query: 80 IAMEFKSVGNKIS----WKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENG 135
IA+ F + + S W+ I+TL +Y P++F+ E E Y +++ IHD+
Sbjct: 154 IALAFHLLCERASPNSFWQPYIQTLPSEYDTPLYFE---EDEVRY-LQSTQAIHDVFSQY 209
Query: 136 KD---------KIVPVLPHL-ILPIKNALSTRNPEVICETLKVLQHLV--TSSSMVGEAL 183
K+ K++ PH LP+K++ + + ++ Q+ + S V AL
Sbjct: 210 KNTARQYAYFYKVIQTHPHANKLPLKDSFTYEDYRWAVSSVXTRQNQIPTEDGSRVTLAL 269
Query: 184 VPYY 187
+P +
Sbjct: 270 IPLW 273
>pdb|2DQW|A Chain A, Crystal Structure Of Dihydropteroate Synthase (Folp) From
Thermus Thermophilus Hb8
pdb|2DQW|B Chain B, Crystal Structure Of Dihydropteroate Synthase (Folp) From
Thermus Thermophilus Hb8
pdb|2DZA|A Chain A, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 4-Aminobenzoate
pdb|2DZA|B Chain B, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 4-Aminobenzoate
pdb|2DZB|A Chain A, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 6hmppp
pdb|2DZB|B Chain B, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 6hmppp
Length = 294
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 132 LENGKDKIVPVLPHLI-LPIKNALSTRNPEVICETLKVLQHLV 173
+E K +++PVL ++ L + ++ TR PEV E LK+ HL+
Sbjct: 85 VEEEKRRLLPVLEAVLSLGVPVSVDTRKPEVAEEALKLGAHLL 127
>pdb|4A8E|A Chain A, The Structure Of A Dimeric Xer Recombinase From Archaea
Length = 292
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 134 NGKDKIVPVLPHLILPIKNALSTRNPE 160
GKD++VP+ L+ IK L +RN +
Sbjct: 161 GGKDRVVPISESLLSEIKRYLESRNDD 187
>pdb|4GY2|A Chain A, Crystal Structure Of Apo-ia-actin Complex
pdb|4H03|A Chain A, Crystal Structure Of Nad+-ia-actin Complex
pdb|4H0T|A Chain A, Crystal Structure Of Ia-adpr-actin Complex
Length = 418
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 58 PKDKTYDYTSMFRTYYSRG--DFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRE 115
P++K Y R S+ D PI + + K ++ ++I+T N F+ L+E
Sbjct: 73 PREKEY---KNLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISLEKFNELKE 129
Query: 116 TEYPYKFFASKGIHD--LLE--NGKDKIVPVLPHLILP 149
T K F G D L E NG +K P+L HL LP
Sbjct: 130 T-IQDKLFKQDGFKDVSLYEPGNGDEKPTPLLIHLKLP 166
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 116 TEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 154
T YP+ FF +G ++LL+N K++ + + I KN +
Sbjct: 138 TTYPHSFFEEQGFYNLLDN-KEQAISAIKDGIAIGKNVI 175
>pdb|4H0X|A Chain A, Crystal Structure Of Nad+-ia(e380a)-actin Complex
Length = 418
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 58 PKDKTYDYTSMFRTYYSRG--DFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRE 115
P++K Y R S+ D PI + + K ++ ++I+T N F+ L+E
Sbjct: 73 PREKEY---KNLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISLEKFNELKE 129
Query: 116 TEYPYKFFASKGIHDLL----ENGKDKIVPVLPHLILP 149
T K F G D+ NG +K P+L HL LP
Sbjct: 130 T-IQDKLFKQDGFKDVSLYEPGNGDEKPTPLLIHLKLP 166
>pdb|4H0Y|A Chain A, Crystal Structure Of Nad+-ia(e380s)-actin Complex
Length = 418
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 58 PKDKTYDYTSMFRTYYSRG--DFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRE 115
P++K Y R S+ D PI + + K ++ ++I+T N F+ L+E
Sbjct: 73 PREKEY---KNLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISLEKFNELKE 129
Query: 116 TEYPYKFFASKGIHDLL----ENGKDKIVPVLPHLILP 149
T K F G D+ NG +K P+L HL LP
Sbjct: 130 T-IQDKLFKQDGFKDVSLYEPGNGDEKPTPLLIHLKLP 166
>pdb|4H0V|A Chain A, Crystal Structure Of Nad+-ia(e378s)-actin Complex
Length = 418
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 58 PKDKTYDYTSMFRTYYSRG--DFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRE 115
P++K Y R S+ D PI + + K ++ ++I+T N F+ L+E
Sbjct: 73 PREKEY---KNLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISLEKFNELKE 129
Query: 116 TEYPYKFFASKGIHDLL----ENGKDKIVPVLPHLILP 149
T K F G D+ NG +K P+L HL LP
Sbjct: 130 T-IQDKLFKQDGFKDVSLYEPGNGDEKPTPLLIHLKLP 166
>pdb|1GIQ|A Chain A, Crystal Structure Of The Enzymatic Componet Of Iota-Toxin
From Clostridium Perfringens With Nadh
pdb|1GIQ|B Chain B, Crystal Structure Of The Enzymatic Componet Of Iota-Toxin
From Clostridium Perfringens With Nadh
pdb|1GIR|A Chain A, Crystal Structure Of The Enzymatic Componet Of Iota-Toxin
From Clostridium Perfringens With Nadph
pdb|3BUZ|A Chain A, Crystal Structure Of Ia-Btad-Actin Complex
Length = 413
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 58 PKDKTYDYTSMFRTYYSRG--DFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRE 115
P++K Y R S+ D PI + + K ++ ++I+T N F+ L+E
Sbjct: 68 PREKEY---KNLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISLEKFNELKE 124
Query: 116 TEYPYKFFASKGIHD--LLE--NGKDKIVPVLPHLILP 149
T K F G D L E NG +K P+L HL LP
Sbjct: 125 T-IQDKLFKQDGFKDVSLYEPGNGDEKPTPLLIHLKLP 161
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1NLY|A Chain A, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLY|B Chain B, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLZ|A Chain A, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|B Chain B, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|C Chain C, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|D Chain D, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|E Chain E, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|F Chain F, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1OPX|A Chain A, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
pdb|1OPX|B Chain B, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
Length = 330
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 116 TEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 154
T YP+ FF +G ++LL+N K++ + + I KN +
Sbjct: 138 TTYPHSFFEEQGFYNLLDN-KEQAISAIKDGIAIGKNVI 175
>pdb|1H76|A Chain A, The Crystal Structure Of Diferric Porcine Serum
Transferrin
Length = 696
Score = 27.3 bits (59), Expect = 5.6, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 60 DKTYDYTSMFRTYYSRGDFP-----IAMEFKSVGNKISWKEDIKTLNYQ 103
++ Y YT FR +GD + + NK W +D+K ++++
Sbjct: 521 ERYYGYTGAFRCLVEKGDVAFVKDQVVQQNTDGKNKDDWAKDLKQMDFE 569
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,592,524
Number of Sequences: 62578
Number of extensions: 275017
Number of successful extensions: 509
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 22
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)