BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7091
(205 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96M98|PACRG_HUMAN Parkin coregulated gene protein OS=Homo sapiens GN=PACRG PE=1 SV=2
Length = 296
Score = 206 bits (524), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 127/170 (74%)
Query: 35 VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 94
V F+++ KN++ PP + + FR +Y RGDFPIA+E S GNKI+WK
Sbjct: 38 VSEGFTVKAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWK 97
Query: 95 EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 154
+I+ L+Y +YLP+FFDGL E +PY+FFA +GIHD+LE+G +KI+PVLP LI+PIKNAL
Sbjct: 98 VEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNAL 157
Query: 155 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNNRY 204
+ RN +VIC TLKVLQHLV S+ MVG+ALVPYY+QILP LN++K++N Y
Sbjct: 158 NLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNGSY 207
>sp|Q9DAK2|PACRG_MOUSE Parkin coregulated gene protein homolog OS=Mus musculus GN=Pacrg
PE=1 SV=1
Length = 241
Score = 202 bits (514), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 125/167 (74%)
Query: 35 VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 94
V F+++ KN++ PP + + FR Y RGDFPIA+E S GNKI+WK
Sbjct: 22 VSEGFTVKAMMKNSVVRGPPVAGAFKERPAKPTTFRKCYERGDFPIALEHDSKGNKIAWK 81
Query: 95 EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 154
+I+ L+Y +YLP+FFDGL E +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNAL
Sbjct: 82 VEIEKLDYHHYLPLFFDGLSEMTFPYEFFARRGIHDMLEHGGNKILPVIPQLIIPIKNAL 141
Query: 155 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN 201
+ RN ++IC TLKVLQHLV SS MVGEAL+PYY+QILP LN++K++N
Sbjct: 142 NLRNRQIICVTLKVLQHLVVSSEMVGEALLPYYRQILPILNIFKNMN 188
>sp|Q8N7B6|PACRL_HUMAN PACRG-like protein OS=Homo sapiens GN=PACRGL PE=1 SV=2
Length = 248
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 67 SMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASK 126
S F YS+G P + SV +++ W+ ++L++ L +GLRET++PY F + +
Sbjct: 78 SAFAAIYSKGGIPCRLVHGSVKHRLQWECPPESLSFDPLLITLAEGLRETKHPYTFVSKE 137
Query: 127 GIHDLL--ENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALV 184
G +LL + +K +P+LP LI +K AL + EV L L L S +VG +L
Sbjct: 138 GFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLNALVQL---SVVVGPSLN 194
Query: 185 PYYKQILPHLN 195
+ K +L L+
Sbjct: 195 DHLKHLLTSLS 205
>sp|Q9D3X5|PACRL_MOUSE PACRG-like protein OS=Mus musculus GN=Pacrgl PE=1 SV=1
Length = 248
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 67 SMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASK 126
+ F YS+G P + SV +++ W+ + L + L +GLRET++PY F + +
Sbjct: 78 TAFAAIYSQGGIPCRLVHGSVKHRLQWECPPEILPFDPLLITLAEGLRETKHPYTFVSKE 137
Query: 127 GIHDLL--ENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEAL 183
G +LL + +K +P+LP LI +K AL + EV L L L S +VG +L
Sbjct: 138 GFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLSALVQL---SVVVGPSL 193
>sp|P42235|KDGD_BACSU Probable 5-dehydro-4-deoxyglucarate dehydratase OS=Bacillus
subtilis (strain 168) GN=ycbC PE=3 SV=2
Length = 308
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 86 SVGNKISWKEDI--KTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVL 143
++G+++ W + + YLPI F Y S+ +D L+NG D++V L
Sbjct: 178 TIGDRLGWLNGMPMAEVTMPAYLPIGFHSYSSAISNYIPHISRMFYDALKNGNDELVKEL 237
Query: 144 -PHLILPIKNALSTR 157
H+ILPI + R
Sbjct: 238 YRHVILPINDIRKQR 252
>sp|P27425|TRFE_HORSE Serotransferrin OS=Equus caballus GN=TF PE=2 SV=1
Length = 706
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 48 TITGAPPKCVPK--DKTYDYTSMFRTYYSRGDFPI----AMEFKSVG-NKISWKEDIKTL 100
+ +G +C P ++ Y YT FR +GD +E + G N W +D+K+
Sbjct: 525 SASGPGRECEPNNHERYYGYTGAFRCLVEKGDVAFVKHQTVEQNTDGRNPDDWAKDLKSE 584
Query: 101 NYQYYLPIFFDGLRETEYPYK 121
N++ P DG R++ +K
Sbjct: 585 NFKLLCP---DGTRKSVTEFK 602
>sp|Q86C65|TOR_DICDI Target of rapamycin OS=Dictyostelium discoideum GN=tor PE=1 SV=1
Length = 2380
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 115 ETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVT 174
+ E P F A + ++ I P L +++ IK L T+ + E L + L
Sbjct: 324 QNERPTAFIA---LGEIAMAVGGSIKPYLDSIVVMIKQGLMTKGKQFCPEVLTCISML-- 378
Query: 175 SSSMVGEALVPYYKQILPHL 194
+S VG+++ P+ + ILP +
Sbjct: 379 -ASAVGQSMYPHMQVILPQM 397
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,632,033
Number of Sequences: 539616
Number of extensions: 3399060
Number of successful extensions: 7420
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7412
Number of HSP's gapped (non-prelim): 10
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)